dbd_onto 0.0.5 → 0.0.6

data/dbd_onto.gemspec

@@ -23,7 +23,10 @@ Gem::Specification.new do |spec|
   spec.add_development_dependency 'guard-rspec'
   spec.add_development_dependency 'terminal-notifier-guard'
   spec.add_development_dependency 'yard'
-  spec.add_runtime_dependency 'rdf'
+  spec.add_runtime_dependency 'rdf', '>= 1.0.9'
   spec.add_runtime_dependency 'ruby_peter_v', '>= 0.0.11'
   spec.add_runtime_dependency 'dbd', '>= 0.0.19'
+  # only needed for DbdOnto::Schema.generate
+  spec.add_runtime_dependency 'rdf-rdfa', '>= 1.0.2'
+  spec.add_runtime_dependency 'equivalent-xml'
 end

data/lib/dbd_onto/meta_context.rb

@@ -2,13 +2,17 @@ module DbdOnto
   module MetaContext
 
     def meta_context
-      fixed_meta_context
+      fixed_context(fixed_meta_context_csv)
+    end
+
+    def schema_context
+      fixed_context(fixed_schema_context_csv)
     end
 
   private
 
-    def fixed_meta_context
-      graph = Dbd::Graph.new.from_CSV(fixed_meta_context_csv)
+    def fixed_context(csv_string)
+      graph = Dbd::Graph.new.from_CSV(csv_string)
       subject = graph.subjects.single
       Dbd::Context.new(subject: subject) << graph
     end
@@ -21,6 +25,17 @@ module DbdOnto
 "2013-09-03 20:54:42.473812175 UTC","c73715de-4cb3-4022-93c6-fb9ec95851be","","36c0b50f-834e-45f5-a911-e3f2b47fe4b9","dc:source","https://github.com/petervandenabeele/dbd/blob/d37360070e7f8e61a19c2bca210c881a151ded75/docs/rationale.md"
 "2013-09-03 20:54:42.473828787 UTC","3aaa9125-6278-4a70-9a40-7f2baf32ad99","","36c0b50f-834e-45f5-a911-e3f2b47fe4b9","dc:creator","Peter Vandenabeele (@peter_v)"
 "2013-09-03 20:54:42.473845509 UTC","9324e4bc-5922-463b-8fc6-521ca5585c22","","36c0b50f-834e-45f5-a911-e3f2b47fe4b9","dcterms:created","2013-08-09 21:45:00 UTC"
+EOS
+    end
+
+    def fixed_schema_context_csv
+<<EOS
+"2013-10-14 21:43:42.473735776 UTC","d780b54c-5aad-44a7-9e9e-c8d7a7084276","","37c0b50f-834e-45f5-a911-e3f2b47fe4b9","context:visibility","public"
+"2013-10-14 21:43:42.473775562 UTC","bf5b97ec-d026-4a73-b8fb-a13995966ec1","","37c0b50f-834e-45f5-a911-e3f2b47fe4b9","context:encryption","clear"
+"2013-10-14 21:43:42.473796239 UTC","1351e568-f7e6-44bf-b5b0-54c15cefe5e0","","37c0b50f-834e-45f5-a911-e3f2b47fe4b9","context:license","Copyright the sponsors of Schema.org: Google, Inc., Yahoo, Inc., and Microsoft Corporation. Licensed under Creative Commons Attribution-ShareAlike License (version 3.0) (see http://schema.org/docs/terms.html)"
+"2013-10-14 21:43:42.473812175 UTC","c83715de-4cb3-4022-93c6-fb9ec95851bf","","37c0b50f-834e-45f5-a911-e3f2b47fe4b9","dc:source","http://schema.org"
+"2013-10-14 21:43:42.473828787 UTC","3baa9125-6278-4a70-9a40-7f2baf32ae00","","37c0b50f-834e-45f5-a911-e3f2b47fe4b9","dc:creator","Peter Vandenabeele (@peter_v)"
+"2013-10-14 21:43:42.473845509 UTC","9424e4bc-5922-463b-8fc6-521ca5585c23","","37c0b50f-834e-45f5-a911-e3f2b47fe4b9","dcterms:created","2013-10-15 21:56:00 UTC"
 EOS
     end
   end

data/lib/dbd_onto/schema.rb

@@ -0,0 +1,78 @@
+module DbdOnto
+  class Schema < Base
+
+    def initialize
+      super
+      self << schema_context
+      self << self.class.schema_resource
+    end
+
+  private
+
+    def self.filename
+      File.expand_path('../../../data/schema_data.csv', __FILE__)
+    end
+
+    # performance optimization (a bit ugly, but it works ...)
+    # use a class instance variable to cache the schema_resource
+    # at _load_ time! Also tried "memoization" increases reported
+    # RSpec test time from 0.20 to 0.67 seconds (which could be
+    # relevant, since we really want to minimize the _run-time_
+    # cost after loading the Ruby/Rails app (e.g. in Passenger))
+
+    @schema_resource = Dbd::Graph.new.from_CSV(File.open(filename))
+
+    def self.schema_resource
+      @schema_resource
+    end
+
+    # This code is reused on 2013-10-15 with permission from the ruby-rdf/rdf project
+    # from the file https://github.com/ruby-rdf/rdf/blob/master/lib/rdf/vocab/schema.rb
+    # It was licensed as "public domain" (https://github.com/ruby-rdf/rdf/blob/master/UNLICENSE)
+    def self.generate
+      require 'addressable/uri'
+      require 'rdf/rdfa'
+      v = RDF::Graph.load("http://schema.org/docs/schema_org_rdfa.html", format: :rdfa)
+
+      schema_hash = {}
+
+      # build the list of schema:predicates
+      v.query(property: RDF.type, object: RDF.Property) do |c|
+        uri = c.subject.to_s
+        schema_predicate = "schema:#{uri.split('/').last}"
+        schema_hash[schema_predicate] = {
+            'meta:defines_predicate' => schema_predicate,
+            'rdf:uri' => uri}
+      end
+
+      # fill the required properties from the RDF::Graph
+      schema_hash.each do |schema_predicate, properties_hash|
+        v.query(subject: RDF::URI(properties_hash['rdf:uri'])) do |c|
+          case c.predicate
+            when RDF::RDFS.label
+              properties_hash['rdfs:label'] = c.object.to_s
+            when RDF::RDFS.comment
+              properties_hash['rdfs:comment'] = c.object.to_s
+          end
+        end
+      end
+
+      # create a graoh with 1 resource per schema:<predicate>
+      # we now save the schema:<predicate>, rdf:uri, rdfs:label and rdfs:comment
+      schema_resource = Base.new
+      schema_context = schema_resource.schema_context
+
+      schema_hash.each do |schema_predicate, properties_hash|
+        resource = Dbd::Resource.new(context_subject: schema_context.subject)
+        properties_hash.each do |predicate, object|
+          resource << Dbd::Fact.new(
+            predicate: predicate,
+            object: object)
+        end
+        schema_resource << resource
+      end
+
+      schema_resource.to_CSV
+    end
+  end
+end

data/lib/dbd_onto/version.rb

@@ -1,3 +1,3 @@
 module DbdOnto
-  VERSION = "0.0.5"
+  VERSION = "0.0.6"
 end

data/lib/dbd_onto.rb

@@ -4,3 +4,4 @@ require 'dbd_onto/meta_context'
 require 'dbd_onto/base'
 require 'dbd_onto/context'
 require 'dbd_onto/meta'
+require 'dbd_onto/schema'

data/spec/lib/dbd_onto/schema_spec.rb

@@ -0,0 +1,56 @@
+require 'spec_helper'
+
+describe DbdOnto::Schema do
+
+  include Spec::Context
+
+  it 'is a Dbd::Graph' do
+    subject.should be_a(Dbd::Graph)
+  end
+
+  context 'performance optimalisation: loads from file only once per class load' do
+    it "when calling new twice it does not receive the file load at all" do
+      described_class.should_not_receive(:filename)
+      described_class.new
+      described_class.new
+    end
+  end
+
+  it 'all facts in the Schema ontology have the schema_context as context' do
+    subject.all? do |fact|
+      fact.is_a?(Dbd::ContextFact) ||
+        check_schema_context?(subject.by_subject(fact.context_subject))
+    end.should be_true
+  end
+
+  describe 'properties include' do
+
+    it 'defines predicate schema:about' do
+      subject.detect do |fact|
+        fact.predicate == 'meta:defines_predicate' &&
+          fact.object == 'schema:about'
+      end.should_not be_nil
+    end
+
+    it 'defines predicate rdf:uri' do
+      subject.detect do |fact|
+        fact.predicate == 'rdf:uri' &&
+          fact.object == 'http://schema.org/unitCode'
+      end.should_not be_nil
+    end
+
+    it 'defines predicate rdfs:label' do
+      subject.detect do |fact|
+        fact.predicate == 'rdfs:label' &&
+          fact.object == 'tickerSymbol'
+      end.should_not be_nil
+    end
+
+    it 'defines predicate rdfs:comment' do
+      subject.detect do |fact|
+        fact.predicate == 'rdfs:comment' &&
+          fact.object == 'The type of tissue sample required for the test.'
+      end.should_not be_nil
+    end
+  end
+end

data/spec/spec_helper.rb

@@ -2,8 +2,12 @@ require 'dbd_onto'
 
 # load all support files
 root = File.expand_path('../', __FILE__)
-Dir[root + '/support/**/*.rb'].each {|f| require f}
+Dir[root + '/support/**/*.rb'].each { |f| require f }
 
 RSpec.configure do |config|
   config.order = 'random'
+
+  config.treat_symbols_as_metadata_keys_with_true_values = true
+  config.filter_run focus: true
+  config.run_all_when_everything_filtered = true
 end

data/spec/support/meta_context.rb

@@ -0,0 +1,23 @@
+module Spec
+  module Context
+
+    def check_context?(meta_context)
+      meta_context.detect {|p| p.predicate == 'context:visibility' && p.object == 'public'} &&
+      meta_context.detect {|p| p.predicate == 'context:encryption' && p.object == 'clear'} &&
+      meta_context.detect {|p| p.predicate == 'context:license'} &&
+      meta_context.detect {|p| p.predicate == 'dc:source'} &&
+      meta_context.detect {|p| p.predicate == 'dc:creator' && p.object == 'Peter Vandenabeele (@peter_v)'} &&
+      meta_context.detect {|p| p.predicate == 'dcterms:created'}
+    end
+
+    def check_schema_context?(meta_context)
+      meta_context.detect {|p| p.predicate == 'context:visibility' && p.object == 'public'} &&
+      meta_context.detect {|p| p.predicate == 'context:encryption' && p.object == 'clear'} &&
+      meta_context.detect {|p| p.predicate == 'context:license'} &&
+      meta_context.detect {|p| p.predicate == 'dc:source' && p.object == 'http://schema.org'} &&
+      meta_context.detect {|p| p.predicate == 'dc:creator' && p.object == 'Peter Vandenabeele (@peter_v)'} &&
+      meta_context.detect {|p| p.predicate == 'dcterms:created'}
+    end
+
+  end
+end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: dbd_onto
 version: !ruby/object:Gem::Version
-  version: 0.0.5
+  version: 0.0.6
 platform: ruby
 authors:
 - Peter Vandenabeele
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2013-10-14 00:00:00.000000000 Z
+date: 2013-10-20 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: bundler
@@ -86,14 +86,14 @@ dependencies:
     requirements:
     - - '>='
       - !ruby/object:Gem::Version
-        version: '0'
+        version: 1.0.9
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - '>='
       - !ruby/object:Gem::Version
-        version: '0'
+        version: 1.0.9
 - !ruby/object:Gem::Dependency
   name: ruby_peter_v
   requirement: !ruby/object:Gem::Requirement
@@ -122,6 +122,34 @@ dependencies:
     - - '>='
       - !ruby/object:Gem::Version
         version: 0.0.19
+- !ruby/object:Gem::Dependency
+  name: rdf-rdfa
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - '>='
+      - !ruby/object:Gem::Version
+        version: 1.0.2
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - '>='
+      - !ruby/object:Gem::Version
+        version: 1.0.2
+- !ruby/object:Gem::Dependency
+  name: equivalent-xml
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - '>='
+      - !ruby/object:Gem::Version
+        version: '0'
 description: Ontologies for Dbd
 email:
 - peter@vandenabeele.com
@@ -139,19 +167,22 @@ files:
 - LICENSE.txt
 - README.md
 - Rakefile
+- data/schema_data.csv
 - dbd_onto.gemspec
 - lib/dbd_onto.rb
 - lib/dbd_onto/base.rb
 - lib/dbd_onto/context.rb
 - lib/dbd_onto/meta.rb
 - lib/dbd_onto/meta_context.rb
+- lib/dbd_onto/schema.rb
 - lib/dbd_onto/version.rb
 - spec/lib/dbd_onto/base_spec.rb
 - spec/lib/dbd_onto/context_spec.rb
 - spec/lib/dbd_onto/meta_context_spec.rb
 - spec/lib/dbd_onto/meta_spec.rb
+- spec/lib/dbd_onto/schema_spec.rb
 - spec/spec_helper.rb
-- spec/support/meta_provenance.rb
+- spec/support/meta_context.rb
 homepage: ''
 licenses:
 - MIT
@@ -181,6 +212,7 @@ test_files:
 - spec/lib/dbd_onto/context_spec.rb
 - spec/lib/dbd_onto/meta_context_spec.rb
 - spec/lib/dbd_onto/meta_spec.rb
+- spec/lib/dbd_onto/schema_spec.rb
 - spec/spec_helper.rb
-- spec/support/meta_provenance.rb
+- spec/support/meta_context.rb
 has_rdoc: 

data/spec/support/meta_provenance.rb

@@ -1,14 +0,0 @@
-module Spec
-  module Context
-
-    def check_context?(meta_context)
-      meta_context.detect {|p| p.predicate == 'context:visibility' && p.object == 'public'} &&
-      meta_context.detect {|p| p.predicate == 'context:encryption' && p.object == 'clear'} &&
-      meta_context.detect {|p| p.predicate == 'context:license'} &&
-      meta_context.detect {|p| p.predicate == 'dc:source'} &&
-      meta_context.detect {|p| p.predicate == 'dc:creator'} &&
-      meta_context.detect {|p| p.predicate == 'dcterms:created'}
-    end
-
-  end
-end