dbd 0.0.13 → 0.0.14
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/HISTORY.txt +6 -0
- data/README.md +33 -31
- data/docs/stories/014_escape_newlines_in_CSV.txt +10 -4
- data/docs/test.rb +28 -29
- data/lib/dbd/fact.rb +11 -11
- data/lib/dbd/version.rb +1 -1
- data/spec/lib/dbd/fact/methods_spec.rb +14 -10
- data/spec/lib/dbd/graph/to_csv_spec.rb +8 -8
- data/spec/test_factories/fact.rb +2 -10
- metadata +2 -2
checksums.yaml
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@@ -1,7 +1,7 @@
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---
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SHA1:
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metadata.gz:
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data.tar.gz:
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metadata.gz: a4df1f0e326b407d9c2f0391a7ae7b0980a2deae
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data.tar.gz: a9724f1c990e1fdeaa3c3159ae059b26de4ddc4c
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 391388832659492f0c00259140f97c1626820a0473373d5491ef9fb7e1fca6f1dd0badc3be4fca3bbbb2c567b52bdfa37bfef14bc1efe60f40beaa22813bc0ca
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data.tar.gz: ca0facecd89bca3dfffb24865b8cf14e4676582d8254fed22e26ca268738c61ffc35f4f3fc7b755c8b4e728779e14579a8ae99a91be6f17f306f3c10f2cf490e
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data/HISTORY.txt
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@@ -85,3 +85,9 @@
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* backslash => '\\\\' (double backslash)
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=> now 1 fact is 1 "line" in the CSV file
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(allowing file operations that are line oriented)
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0.0.14 (9 Aug 2013)
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======
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* in to_CSV the time_stamp now comes first (swapped with id)
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* this will allow file level 'sort' on the ISO dates
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data/README.md
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@@ -29,7 +29,7 @@ This is facts based data store, inspired by [RDF] concepts, but adding a log bas
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provenance is possible per fact (e.g. different properties about the same
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resource can come from different sources, different visibility etc.)
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* can keep the original_source reference, creator, date, …
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* can have a context that allows filtering data (e.g. private, professional, …)
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* can have a context that allows filtering data (e.g. public, private, professional, …)
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* separate encryption schemes per context are possible
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* Context is flexible, since built itself from Facts
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* Schemaless
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* the object of each Fact can be another Resource
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* aimed at exporting to a graph database (e.g. Neo4j) for analysis
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-
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## License
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Open Source [MIT]
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@@ -63,7 +62,7 @@ require 'dbd'
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context = Dbd::Context.new
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context << Dbd::ContextFact.new(predicate: "prov:
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context << Dbd::ContextFact.new(predicate: "prov:visibility", object: "public")
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context << Dbd::ContextFact.new(predicate: "prov:source", object: "http://github.com/petervandenabeele/dbd")
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context << Dbd::ContextFact.new(predicate: "dcterms:creator", object: "@peter_v")
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context << Dbd::ContextFact.new(predicate: "dcterms:created", object: Time.now.utc)
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@@ -84,15 +83,15 @@ puts "facts in short representation:"
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puts graph.map(&:short)
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# facts in short representation:
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# [ cont ] :
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#
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#
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#
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# [ cont ] : d5ad0ca1 : prov:visibility : public
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# [ cont ] : d5ad0ca1 : prov:source : http://github.com/petervandenabeele/dbd
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# [ cont ] : d5ad0ca1 : dcterms:creator : @peter_v
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# [ cont ] : d5ad0ca1 : dcterms:created : 2013-08-09 20:15:24 UTC
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# [ cont ] : d5ad0ca1 : prov:license : MIT
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# d5ad0ca1 : dede3cf8 : todo:nobelPeacePriceWinn : 2012
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# d5ad0ca1 : dede3cf8 : rdfs:label : EU
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# d5ad0ca1 : dede3cf8 : rdfs:comment : European Union
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# d5ad0ca1 : dede3cf8 : todo:story : A long period of peace,_ that is a "bliss".
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csv = graph.to_CSV
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@@ -100,30 +99,29 @@ puts "facts in full detail in CSV:"
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puts csv
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# facts in full detail in CSV:
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#
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# "
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# "
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# "
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# "
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# "
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# that is a ""bliss""."
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# "2013-08-09 20:15:24.022368550 UTC","9cc48236-cb12-40e8-8641-08407b9a03fb","","d5ad0ca1-645f-41a8-8384-7f411a1f94e2","prov:visibility","public"
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# "2013-08-09 20:15:24.022416066 UTC","86afeade-0802-4fe7-b0d7-9a09d5441dbf","","d5ad0ca1-645f-41a8-8384-7f411a1f94e2","prov:source","http://github.com/petervandenabeele/dbd"
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# "2013-08-09 20:15:24.022435168 UTC","97d7fd9f-77e1-45e9-bdaa-9a283345c8ec","","d5ad0ca1-645f-41a8-8384-7f411a1f94e2","dcterms:creator","@peter_v"
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# "2013-08-09 20:15:24.022449630 UTC","aa0897ce-d5ea-497a-8c4b-3a9339f6cc52","","d5ad0ca1-645f-41a8-8384-7f411a1f94e2","dcterms:created","2013-08-09 20:15:24 UTC"
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# "2013-08-09 20:15:24.022463761 UTC","154d2b46-99df-4eaf-8a75-9e3b7d5df2a7","","d5ad0ca1-645f-41a8-8384-7f411a1f94e2","prov:license","MIT"
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# "2013-08-09 20:15:24.022480963 UTC","0590f53a-346a-4ece-b510-fc1179e76e05","d5ad0ca1-645f-41a8-8384-7f411a1f94e2","dede3cf8-2d3f-4170-8ce5-3fe7c0db5529","todo:nobelPeacePriceWinner","2012"
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# "2013-08-09 20:15:24.022497483 UTC","b28dc6fb-1779-47d3-9109-882075b28d08","d5ad0ca1-645f-41a8-8384-7f411a1f94e2","dede3cf8-2d3f-4170-8ce5-3fe7c0db5529","rdfs:label","EU"
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# "2013-08-09 20:15:24.022512505 UTC","5474dbc0-ee47-4e7a-aa0a-cd60f8467d84","d5ad0ca1-645f-41a8-8384-7f411a1f94e2","dede3cf8-2d3f-4170-8ce5-3fe7c0db5529","rdfs:comment","European Union"
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# "2013-08-09 20:15:24.022526505 UTC","a8c0a137-8c45-49bf-9a87-5915a24725b9","d5ad0ca1-645f-41a8-8384-7f411a1f94e2","dede3cf8-2d3f-4170-8ce5-3fe7c0db5529","todo:story","A long period of peace,\n that is a ""bliss""."
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imported_graph = Dbd::Graph.new.from_CSV(csv)
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puts imported_graph.map(&:short)
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#
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#
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# [ cont ] : d5ad0ca1 : prov:visibility : public
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# [ cont ] : d5ad0ca1 : prov:source : http://github.com/petervandenabeele/dbd
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# [ cont ] : d5ad0ca1 : dcterms:creator : @peter_v
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# [ cont ] : d5ad0ca1 : dcterms:created : 2013-08-09 20:15:24 UTC
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# [ cont ] : d5ad0ca1 : prov:license : MIT
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# d5ad0ca1 : dede3cf8 : todo:nobelPeacePriceWinn : 2012
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# d5ad0ca1 : dede3cf8 : rdfs:label : EU
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# d5ad0ca1 : dede3cf8 : rdfs:comment : European Union
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# d5ad0ca1 : dede3cf8 : todo:story : A long period of peace,_ that is a "bliss".
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```
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## Performance tests on 10 M facts
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significantly caused by input validation (a test in JRuby without validation on
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reading 1M facts was only 6% faster with the input validation turned off).
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Version 0.0.13 introduced newline escaping for to_CSV and from_CSV and this
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has added a performance penalty of approx. 30% (all strings are sent through
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gsub with a regexp).
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[RDF]: http://www.w3.org/RDF/
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[Rationale]: http://github.com/petervandenabeele/dbd/blob/master/docs/rationale.md
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[MIT]: https://github.com/petervandenabeele/dbd/blob/master/LICENSE.txt
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* "\n" => "\\n" (a back slash and a letter n)
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"C:\nuby" => "C:\\nuby"
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* do we need to escape a "real" backslash ??
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=> yes, escape single backslash to double backslash
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* "\\n" (backslash n) => "\n" (a newline)
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* the magic upon unescaping is that a uneven amount of backslashes,
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followed by a 'n' can only be an escaped newline. A real
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"backslash n" will always trigger an even amount of backslashes
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in the escaped version.
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* validate that write + read performance is not degraded too much
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data/docs/test.rb
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puts graph.map(&:short)
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# [
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# [ cont ] : d5ad0ca1 : prov:source : http://github.com/petervandenabeele/dbd
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# [ cont ] : d5ad0ca1 : dcterms:creator : @peter_v
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# [ cont ] : d5ad0ca1 : dcterms:created : 2013-08-09 20:15:24 UTC
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# [ cont ] : d5ad0ca1 : prov:license : MIT
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# d5ad0ca1 : dede3cf8 : todo:nobelPeacePriceWinn : 2012
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# d5ad0ca1 : dede3cf8 : rdfs:label : EU
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# d5ad0ca1 : dede3cf8 : rdfs:comment : European Union
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# d5ad0ca1 : dede3cf8 : todo:story : A long period of peace,_ that is a "bliss".
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csv = graph.to_CSV
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puts csv
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# "2013-08-09 20:15:24.022368550 UTC","9cc48236-cb12-40e8-8641-08407b9a03fb","","d5ad0ca1-645f-41a8-8384-7f411a1f94e2","prov:visibility","public"
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# "2013-08-09 20:15:24.022416066 UTC","86afeade-0802-4fe7-b0d7-9a09d5441dbf","","d5ad0ca1-645f-41a8-8384-7f411a1f94e2","prov:source","http://github.com/petervandenabeele/dbd"
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# "2013-08-09 20:15:24.022435168 UTC","97d7fd9f-77e1-45e9-bdaa-9a283345c8ec","","d5ad0ca1-645f-41a8-8384-7f411a1f94e2","dcterms:creator","@peter_v"
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# "2013-08-09 20:15:24.022449630 UTC","aa0897ce-d5ea-497a-8c4b-3a9339f6cc52","","d5ad0ca1-645f-41a8-8384-7f411a1f94e2","dcterms:created","2013-08-09 20:15:24 UTC"
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# "2013-08-09 20:15:24.022463761 UTC","154d2b46-99df-4eaf-8a75-9e3b7d5df2a7","","d5ad0ca1-645f-41a8-8384-7f411a1f94e2","prov:license","MIT"
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# "2013-08-09 20:15:24.022480963 UTC","0590f53a-346a-4ece-b510-fc1179e76e05","d5ad0ca1-645f-41a8-8384-7f411a1f94e2","dede3cf8-2d3f-4170-8ce5-3fe7c0db5529","todo:nobelPeacePriceWinner","2012"
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# "2013-08-09 20:15:24.022497483 UTC","b28dc6fb-1779-47d3-9109-882075b28d08","d5ad0ca1-645f-41a8-8384-7f411a1f94e2","dede3cf8-2d3f-4170-8ce5-3fe7c0db5529","rdfs:label","EU"
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# "2013-08-09 20:15:24.022512505 UTC","5474dbc0-ee47-4e7a-aa0a-cd60f8467d84","d5ad0ca1-645f-41a8-8384-7f411a1f94e2","dede3cf8-2d3f-4170-8ce5-3fe7c0db5529","rdfs:comment","European Union"
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# "2013-08-09 20:15:24.022526505 UTC","a8c0a137-8c45-49bf-9a87-5915a24725b9","d5ad0ca1-645f-41a8-8384-7f411a1f94e2","dede3cf8-2d3f-4170-8ce5-3fe7c0db5529","todo:story","A long period of peace,\n that is a ""bliss""."
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imported_graph = Dbd::Graph.new.from_CSV(csv)
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puts imported_graph.map(&:short)
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# [ cont ] : d5ad0ca1 : prov:source : http://github.com/petervandenabeele/dbd
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# [ cont ] : d5ad0ca1 : dcterms:creator : @peter_v
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# [ cont ] : d5ad0ca1 : dcterms:created : 2013-08-09 20:15:24 UTC
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+
# [ cont ] : d5ad0ca1 : prov:license : MIT
|
|
61
|
+
# d5ad0ca1 : dede3cf8 : todo:nobelPeacePriceWinn : 2012
|
|
62
|
+
# d5ad0ca1 : dede3cf8 : rdfs:label : EU
|
|
63
|
+
# d5ad0ca1 : dede3cf8 : rdfs:comment : European Union
|
|
64
|
+
# d5ad0ca1 : dede3cf8 : todo:story : A long period of peace,_ that is a "bliss".
|
data/lib/dbd/fact.rb
CHANGED
|
@@ -14,10 +14,6 @@ module Dbd
|
|
|
14
14
|
# Framework) concept, but with different and extended functionality.
|
|
15
15
|
#
|
|
16
16
|
# Each basic fact has:
|
|
17
|
-
# * a unique and invariant *id* (a uuid)
|
|
18
|
-
#
|
|
19
|
-
# To allow referencing back to it (e.g. to invalidate it later in a fact stream).
|
|
20
|
-
#
|
|
21
17
|
# * a *time_stamp* (time with nanosecond granularity)
|
|
22
18
|
#
|
|
23
19
|
# To allow verifying that the order in a fact stream is correct.
|
|
@@ -26,6 +22,10 @@ module Dbd
|
|
|
26
22
|
# creation of the fact, but it has to increase in strictly monotic
|
|
27
23
|
# order in a fact stream.
|
|
28
24
|
#
|
|
25
|
+
# * a unique and invariant *id* (a uuid)
|
|
26
|
+
#
|
|
27
|
+
# To allow referencing back to it (e.g. to invalidate it later in a fact stream).
|
|
28
|
+
#
|
|
29
29
|
# * a *context_subject* (a uuid)
|
|
30
30
|
#
|
|
31
31
|
# The subject of the Context (a set of Contexts with
|
|
@@ -67,8 +67,8 @@ module Dbd
|
|
|
67
67
|
##
|
|
68
68
|
# @return [Array] The 6 attributes of a Fact.
|
|
69
69
|
def self.attributes
|
|
70
|
-
[:
|
|
71
|
-
:
|
|
70
|
+
[:time_stamp,
|
|
71
|
+
:id,
|
|
72
72
|
:context_subject,
|
|
73
73
|
:subject,
|
|
74
74
|
:predicate,
|
|
@@ -114,15 +114,15 @@ module Dbd
|
|
|
114
114
|
# Builds a new Fact.
|
|
115
115
|
#
|
|
116
116
|
# @param [Hash{Symbol => Object}] options
|
|
117
|
-
# @option options [#to_s] :predicate Required : the predicate for this Fact
|
|
118
117
|
# @option options [#to_s] :object Required : the object for this Fact (required)
|
|
119
|
-
# @option options [
|
|
120
|
-
# @option options [String (uuid)] :subject
|
|
121
|
-
# @option options [
|
|
118
|
+
# @option options [#to_s] :predicate Required : the predicate for this Fact
|
|
119
|
+
# @option options [String (uuid)] :subject Optional : the subject for this Fact
|
|
120
|
+
# @option options [String (uuid)] :context_subject Optional : the subject of the Context
|
|
122
121
|
# @option options [String (uuid)] :id Optional : set the id
|
|
122
|
+
# @option options [TimeStamp] :time_stamp Optional : the time_stamp for this Fact
|
|
123
123
|
def initialize(options)
|
|
124
|
-
@id = options[:id] || self.class.factory.new_id
|
|
125
124
|
@time_stamp = options[:time_stamp]
|
|
125
|
+
@id = options[:id] || self.class.factory.new_id
|
|
126
126
|
@context_subject = options[:context_subject]
|
|
127
127
|
@subject = options[:subject]
|
|
128
128
|
@predicate = options[:predicate]
|
data/lib/dbd/version.rb
CHANGED
|
@@ -8,7 +8,7 @@ module Dbd
|
|
|
8
8
|
let(:subject) { factory.new_subject }
|
|
9
9
|
let(:fact_1) { TestFactories::Fact.fact_1(context_subject) }
|
|
10
10
|
let(:fact_2_with_subject) { TestFactories::Fact.fact_2_with_subject(context_subject) }
|
|
11
|
-
let(:fact_with_newline) { TestFactories::Fact.
|
|
11
|
+
let(:fact_with_newline) { TestFactories::Fact.data_fact_EU(context_subject) }
|
|
12
12
|
let(:fact_with_special_chars) { TestFactories::Fact.fact_with_special_chars(context_subject) }
|
|
13
13
|
let(:full_fact) { TestFactories::Fact.full_fact }
|
|
14
14
|
|
|
@@ -77,7 +77,7 @@ module Dbd
|
|
|
77
77
|
|
|
78
78
|
it 'for a fact with a newline replaces it with a underscore' do
|
|
79
79
|
fact_with_newline.subject = subject
|
|
80
|
-
fact_with_newline.short.should match(/^[0-9a-f]{8} : [0-9a-f]{8} : http:\/\/example\.org\/test\/ :
|
|
80
|
+
fact_with_newline.short.should match(/^[0-9a-f]{8} : [0-9a-f]{8} : http:\/\/example\.org\/test\/ : \\n_\\n_\\_\\\\_\\\\\\_European_Union\\n$/)
|
|
81
81
|
end
|
|
82
82
|
end
|
|
83
83
|
|
|
@@ -114,8 +114,12 @@ module Dbd
|
|
|
114
114
|
described_class.attributes.size.should == 6
|
|
115
115
|
end
|
|
116
116
|
|
|
117
|
-
it 'first attribute is :
|
|
118
|
-
described_class.attributes.first.should == :
|
|
117
|
+
it 'first attribute is :time_stamp' do
|
|
118
|
+
described_class.attributes.first.should == :time_stamp
|
|
119
|
+
end
|
|
120
|
+
|
|
121
|
+
it 'second attribute is :id' do
|
|
122
|
+
described_class.attributes[1].should == :id
|
|
119
123
|
end
|
|
120
124
|
end
|
|
121
125
|
|
|
@@ -124,8 +128,8 @@ module Dbd
|
|
|
124
128
|
full_fact.values.size.should == 6
|
|
125
129
|
end
|
|
126
130
|
|
|
127
|
-
it 'the
|
|
128
|
-
full_fact.values
|
|
131
|
+
it 'the first element (time_stamp) is a TimeStamp' do
|
|
132
|
+
full_fact.values.first.should be_a(TimeStamp)
|
|
129
133
|
end
|
|
130
134
|
end
|
|
131
135
|
|
|
@@ -134,12 +138,12 @@ module Dbd
|
|
|
134
138
|
full_fact.string_values.size.should == 6
|
|
135
139
|
end
|
|
136
140
|
|
|
137
|
-
it 'the
|
|
138
|
-
full_fact.string_values
|
|
141
|
+
it 'the first element (time_stamp) is a String' do
|
|
142
|
+
full_fact.string_values.first.should be_a(String)
|
|
139
143
|
end
|
|
140
144
|
|
|
141
145
|
it 'escapes a newline into \n and \n into \\\\n (two backslashes and a n)' do
|
|
142
|
-
full_fact.string_values
|
|
146
|
+
full_fact.string_values.last.should == "Gandhi\\nKing\\\\n" # backslash newline
|
|
143
147
|
end
|
|
144
148
|
end
|
|
145
149
|
|
|
@@ -175,7 +179,7 @@ module Dbd
|
|
|
175
179
|
|
|
176
180
|
it 'is true when the time_stamp is 500 ns larger' do
|
|
177
181
|
string_values_time_modified = string_values.dup.tap { |_string_values|
|
|
178
|
-
_string_values[
|
|
182
|
+
_string_values[0] = '2013-06-17 21:55:09.967653513 UTC'
|
|
179
183
|
}
|
|
180
184
|
other = factory.from_string_values(string_values_time_modified)
|
|
181
185
|
other.should be_equivalent(ref)
|
|
@@ -52,12 +52,12 @@ module Dbd
|
|
|
52
52
|
subject.to_CSV.lines.to_a.first.chomp
|
|
53
53
|
end
|
|
54
54
|
|
|
55
|
-
it 'has
|
|
56
|
-
first_line.split(',')[0].
|
|
55
|
+
it 'has time_stamp as first value' do
|
|
56
|
+
first_line.split(',')[0][1..-2].should match(time_stamp_valid_regexp)
|
|
57
57
|
end
|
|
58
58
|
|
|
59
|
-
it 'has
|
|
60
|
-
first_line.split(',')[1]
|
|
59
|
+
it 'has id (a Fact::ID) as second value' do
|
|
60
|
+
first_line.split(',')[1].gsub(/"/, '').should match(id_valid_regexp)
|
|
61
61
|
end
|
|
62
62
|
|
|
63
63
|
it 'has an empty third value (signature of a context_fact)' do
|
|
@@ -119,12 +119,12 @@ module Dbd
|
|
|
119
119
|
subject.to_CSV.lines.to_a.first.chomp
|
|
120
120
|
end
|
|
121
121
|
|
|
122
|
-
it 'has
|
|
123
|
-
first_line.split(',')[0].
|
|
122
|
+
it 'has time_stamp as first value' do
|
|
123
|
+
first_line.split(',')[0][1..-2].should match(time_stamp_valid_regexp)
|
|
124
124
|
end
|
|
125
125
|
|
|
126
|
-
it 'has
|
|
127
|
-
first_line.split(',')[1]
|
|
126
|
+
it 'has id (a Fact::ID) as second value' do
|
|
127
|
+
first_line.split(',')[1].gsub(/"/, '').should match(id_valid_regexp)
|
|
128
128
|
end
|
|
129
129
|
|
|
130
130
|
it 'has context_fact_1.subject as third value' do
|
data/spec/test_factories/fact.rb
CHANGED
|
@@ -10,8 +10,8 @@ module TestFactories
|
|
|
10
10
|
end
|
|
11
11
|
|
|
12
12
|
def self.string_values
|
|
13
|
-
['
|
|
14
|
-
'
|
|
13
|
+
['2013-06-17 21:55:09.967653013 UTC',
|
|
14
|
+
'825e44d5-af33-4858-8047-549bd813daa8',
|
|
15
15
|
'40fab407-9b04-4a51-9a52-d978abfcbb1f',
|
|
16
16
|
'2e9fbc87-2e94-47e9-a8fd-121cc4bc3e8f',
|
|
17
17
|
'http://example.org/test/name',
|
|
@@ -79,14 +79,6 @@ module TestFactories
|
|
|
79
79
|
object: "\\n\n\\n\n\\\n\\\\\n\\\\\\\nEuropean\nUnion\\n")
|
|
80
80
|
end
|
|
81
81
|
|
|
82
|
-
def self.fact_with_newline(context_subject = nil, subject = nil)
|
|
83
|
-
factory_for.new(
|
|
84
|
-
context_subject: context_subject,
|
|
85
|
-
subject: subject,
|
|
86
|
-
predicate: 'http://example.org/test/comment',
|
|
87
|
-
object: "A long story\nreally.")
|
|
88
|
-
end
|
|
89
|
-
|
|
90
82
|
def self.full_fact
|
|
91
83
|
fixed_id = TestFactories::Fact::ID.fixed_id
|
|
92
84
|
fact_with_forced_id(fixed_id).tap do |fact|
|
metadata
CHANGED
|
@@ -1,14 +1,14 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: dbd
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 0.0.
|
|
4
|
+
version: 0.0.14
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- Peter Vandenabeele
|
|
8
8
|
autorequire:
|
|
9
9
|
bindir: bin
|
|
10
10
|
cert_chain: []
|
|
11
|
-
date: 2013-08-
|
|
11
|
+
date: 2013-08-09 00:00:00.000000000 Z
|
|
12
12
|
dependencies:
|
|
13
13
|
- !ruby/object:Gem::Dependency
|
|
14
14
|
name: bundler
|