datasketches 0.4.3 → 0.4.4
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- checksums.yaml +4 -4
- data/CHANGELOG.md +4 -0
- data/ext/datasketches/vo_wrapper.cpp +1 -1
- data/lib/datasketches/version.rb +1 -1
- data/vendor/datasketches-cpp/CMakeLists.txt +1 -0
- data/vendor/datasketches-cpp/LICENSE +35 -7
- data/vendor/datasketches-cpp/NOTICE +2 -2
- data/vendor/datasketches-cpp/common/CMakeLists.txt +2 -1
- data/vendor/datasketches-cpp/common/include/common_defs.hpp +1 -0
- data/vendor/datasketches-cpp/common/include/quantiles_sorted_view_impl.hpp +5 -7
- data/vendor/datasketches-cpp/common/include/xxhash64.h +202 -0
- data/vendor/datasketches-cpp/filters/CMakeLists.txt +43 -0
- data/vendor/datasketches-cpp/filters/include/bit_array_ops.hpp +180 -0
- data/vendor/datasketches-cpp/filters/include/bloom_filter.hpp +753 -0
- data/vendor/datasketches-cpp/filters/include/bloom_filter_builder_impl.hpp +132 -0
- data/vendor/datasketches-cpp/filters/include/bloom_filter_impl.hpp +908 -0
- data/vendor/datasketches-cpp/filters/test/CMakeLists.txt +60 -0
- data/vendor/datasketches-cpp/filters/test/bit_array_ops_test.cpp +107 -0
- data/vendor/datasketches-cpp/filters/test/bloom_filter_allocation_test.cpp +75 -0
- data/vendor/datasketches-cpp/filters/test/bloom_filter_deserialize_from_java_test.cpp +51 -0
- data/vendor/datasketches-cpp/filters/test/bloom_filter_serialize_for_java.cpp +45 -0
- data/vendor/datasketches-cpp/filters/test/bloom_filter_test.cpp +406 -0
- data/vendor/datasketches-cpp/tdigest/include/tdigest.hpp +51 -1
- data/vendor/datasketches-cpp/tdigest/include/tdigest_impl.hpp +38 -1
- data/vendor/datasketches-cpp/tdigest/test/tdigest_test.cpp +12 -3
- data/vendor/datasketches-cpp/theta/include/bit_packing.hpp +5 -5
- data/vendor/datasketches-cpp/theta/test/bit_packing_test.cpp +41 -39
- data/vendor/datasketches-cpp/version.cfg.in +1 -1
- metadata +17 -9
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/*
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* Licensed to the Apache Software Foundation (ASF) under one
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* or more contributor license agreements. See the NOTICE file
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* distributed with this work for additional information
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* regarding copyright ownership. The ASF licenses this file
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* to you under the Apache License, Version 2.0 (the
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* "License"); you may not use this file except in compliance
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* with the License. You may obtain a copy of the License at
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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* Unless required by applicable law or agreed to in writing,
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* software distributed under the License is distributed on an
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* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
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* KIND, either express or implied. See the License for the
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* specific language governing permissions and limitations
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* under the License.
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*/
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#ifndef _BLOOM_FILTER_IMPL_HPP_
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#define _BLOOM_FILTER_IMPL_HPP_
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#include <algorithm>
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#include <memory>
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#include <sstream>
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#include <vector>
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#include "common_defs.hpp"
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#include "bit_array_ops.hpp"
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#include "memory_operations.hpp"
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#include "xxhash64.h"
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// memory scenarios:
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// * on-heap: owned, bit_array_ set, memory_ null
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// * direct: not owned, bit_array_ set, memory_ set
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// * read-only an option for direct
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namespace datasketches {
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template<typename A>
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bloom_filter_alloc<A>::bloom_filter_alloc(uint64_t num_bits, uint16_t num_hashes, uint64_t seed, const A& allocator) :
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allocator_(allocator),
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seed_(seed),
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num_hashes_(num_hashes),
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is_dirty_(false),
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is_owned_(true),
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is_read_only_(false),
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capacity_bits_((num_bits + 63) & ~0x3F), // can round to nearest multiple of 64 prior to bounds checks
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num_bits_set_(0)
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{
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if (num_hashes == 0) {
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throw std::invalid_argument("Must have at least 1 hash function");
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}
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if (num_bits == 0) {
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throw std::invalid_argument("Number of bits must be greater than zero");
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} else if (num_bits > MAX_FILTER_SIZE_BITS) {
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throw std::invalid_argument("Filter may not exceed " + std::to_string(MAX_FILTER_SIZE_BITS) + " bits");
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}
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const uint64_t num_bytes = capacity_bits_ >> 3;
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bit_array_ = AllocUint8(allocator_).allocate(num_bytes);
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std::fill_n(bit_array_, num_bytes, 0);
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if (bit_array_ == nullptr) {
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throw std::bad_alloc();
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}
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memory_ = nullptr;
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}
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template<typename A>
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bloom_filter_alloc<A>::bloom_filter_alloc(uint8_t* memory,
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size_t length_bytes,
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uint64_t num_bits,
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uint16_t num_hashes,
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uint64_t seed,
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const A& allocator) :
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allocator_(allocator),
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seed_(seed),
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num_hashes_(num_hashes),
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is_dirty_(false),
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is_owned_(false),
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is_read_only_(false),
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capacity_bits_((num_bits + 63) & ~0x3F), // can round to nearest multiple of 64 prior to bounds checks
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num_bits_set_(0)
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{
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if (num_hashes == 0) {
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throw std::invalid_argument("Must have at least 1 hash function");
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}
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if (num_bits == 0) {
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throw std::invalid_argument("Number of bits must be greater than zero");
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} else if (num_bits > MAX_FILTER_SIZE_BITS) {
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throw std::invalid_argument("Filter may not exceed " + std::to_string(MAX_FILTER_SIZE_BITS) + " bits");
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}
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const size_t num_bytes = get_serialized_size_bytes(capacity_bits_);
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if (length_bytes < num_bytes) {
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throw std::invalid_argument("Input memory block is too small");
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}
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// fill in header info
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uint8_t* ptr = memory;
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const uint8_t preamble_longs = PREAMBLE_LONGS_STANDARD; // no resizing so assume non-empty
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ptr += copy_to_mem(preamble_longs, ptr);
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const uint8_t serial_version = SER_VER;
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ptr += copy_to_mem(serial_version, ptr);
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const uint8_t family = FAMILY_ID;
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ptr += copy_to_mem(family, ptr);
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const uint8_t flags_byte = 0; // again, assuming non-empty
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ptr += copy_to_mem(flags_byte, ptr);
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ptr += copy_to_mem(num_hashes_, ptr);
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ptr += copy_to_mem(static_cast<uint16_t>(0), ptr); // 2 bytes unused
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ptr += copy_to_mem(seed_, ptr);
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ptr += copy_to_mem(static_cast<int32_t>(capacity_bits_ >> 6), ptr); // sized in java longs
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ptr += copy_to_mem(static_cast<uint32_t>(0), ptr); // 4 bytes unused
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// rest of memory is num bits and bit array, so start with zeroes
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std::fill_n(ptr, sizeof(uint64_t) * ((capacity_bits_ >> 6) + 1), 0);
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bit_array_ = memory + BIT_ARRAY_OFFSET_BYTES;
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memory_ = memory;
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}
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template<typename A>
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bloom_filter_alloc<A>::bloom_filter_alloc(uint64_t seed,
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uint16_t num_hashes,
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bool is_dirty,
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bool is_owned,
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bool is_read_only,
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uint64_t capacity_bits,
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uint64_t num_bits_set,
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uint8_t* bit_array,
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uint8_t* memory,
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const A& allocator) :
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allocator_(allocator),
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seed_(seed),
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num_hashes_(num_hashes),
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is_dirty_(is_dirty),
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is_owned_(is_owned),
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is_read_only_(is_read_only),
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capacity_bits_((capacity_bits + 63) & ~0x3F),
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num_bits_set_(num_bits_set),
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bit_array_(bit_array),
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memory_(memory)
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{
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// private constructor
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// no consistency checks since we should have done those prior to calling this
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if (is_read_only_ && memory_ != nullptr && num_bits_set == DIRTY_BITS_VALUE) {
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num_bits_set_ = bit_array_ops::count_num_bits_set(bit_array_, capacity_bits_ >> 3);
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}
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}
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template<typename A>
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bloom_filter_alloc<A>::bloom_filter_alloc(const bloom_filter_alloc& other) :
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allocator_(other.allocator_),
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seed_(other.seed_),
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num_hashes_(other.num_hashes_),
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is_dirty_(other.is_dirty_),
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is_owned_(other.is_owned_),
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is_read_only_(other.is_read_only_),
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capacity_bits_(other.capacity_bits_),
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num_bits_set_(other.num_bits_set_)
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{
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if (is_owned_) {
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const size_t num_bytes = capacity_bits_ >> 3;
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bit_array_ = AllocUint8(allocator_).allocate(num_bytes);
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if (bit_array_ == nullptr) {
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throw std::bad_alloc();
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}
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std::copy_n(other.bit_array_, num_bytes, bit_array_);
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memory_ = nullptr;
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} else {
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bit_array_ = other.bit_array_;
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memory_ = other.memory_;
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}
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}
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template<typename A>
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bloom_filter_alloc<A>::bloom_filter_alloc(bloom_filter_alloc&& other) noexcept :
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allocator_(std::move(other.allocator_)),
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seed_(other.seed_),
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num_hashes_(other.num_hashes_),
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is_dirty_(other.is_dirty_),
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is_owned_(other.is_owned_),
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is_read_only_(other.is_read_only_),
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capacity_bits_(other.capacity_bits_),
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num_bits_set_(other.num_bits_set_),
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bit_array_(std::move(other.bit_array_)),
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memory_(std::move(other.memory_))
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{
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// ensure destructor on other will behave nicely
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other.is_owned_ = false;
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other.bit_array_ = nullptr;
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other.memory_ = nullptr;
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}
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template<typename A>
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bloom_filter_alloc<A>& bloom_filter_alloc<A>::operator=(const bloom_filter_alloc& other) {
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bloom_filter_alloc<A> copy(other);
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std::swap(allocator_, copy.allocator_);
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std::swap(seed_, copy.seed_);
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std::swap(num_hashes_, copy.num_hashes_);
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std::swap(is_dirty_, copy.is_dirty_);
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std::swap(is_owned_, copy.is_owned_);
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std::swap(is_read_only_, copy.is_read_only_);
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std::swap(capacity_bits_, copy.capacity_bits_);
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std::swap(num_bits_set_, copy.num_bits_set_);
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std::swap(bit_array_, copy.bit_array_);
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std::swap(memory_, copy.memory_);
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return *this;
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}
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template<typename A>
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bloom_filter_alloc<A>& bloom_filter_alloc<A>::operator=(bloom_filter_alloc&& other) {
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if (this == &other) { return *this; }
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std::swap(allocator_, other.allocator_);
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std::swap(seed_, other.seed_);
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std::swap(num_hashes_, other.num_hashes_);
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std::swap(is_dirty_, other.is_dirty_);
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std::swap(is_owned_, other.is_owned_);
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std::swap(is_read_only_, other.is_read_only_);
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std::swap(capacity_bits_, other.capacity_bits_);
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std::swap(num_bits_set_, other.num_bits_set_);
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std::swap(bit_array_, other.bit_array_);
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std::swap(memory_, other.memory_);
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return *this;
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}
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template<typename A>
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bloom_filter_alloc<A>::~bloom_filter_alloc() {
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if (is_owned_) {
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if (memory_ != nullptr) {
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// deallocate total memory_ block, including preamble
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AllocUint8(allocator_).deallocate(memory_, (capacity_bits_ >> 3) + BIT_ARRAY_OFFSET_BYTES);
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} else if (bit_array_ != nullptr) {
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// only need to deallocate bit_array_
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AllocUint8(allocator_).deallocate(bit_array_, capacity_bits_ >> 3);
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}
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memory_ = nullptr;
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bit_array_ = nullptr;
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}
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}
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template<typename A>
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bloom_filter_alloc<A> bloom_filter_alloc<A>::deserialize(const void* bytes, size_t length_bytes, const A& allocator) {
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// not wrapping so we can cast away const as we're not modifying the memory
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return internal_deserialize_or_wrap(const_cast<void*>(bytes), length_bytes, false, false, allocator);
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}
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/*
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* A Bloom Filter's serialized image always uses 3 longs of preamble when empty,
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* otherwise 4 longs:
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*
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* <pre>
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* Long || Start Byte Adr:
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* Adr:
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* || 0 | 1 | 2 | 3 | 4 | 5 | 6 | 7 |
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* 0 || Preamble_Longs | SerVer | FamID | Flags |----Num Hashes---|-----Unused------|
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*
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* || 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 |
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* 1 ||---------------------------------Hash Seed-------------------------------------|
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*
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* || 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 |
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* 2 ||-------BitArray Length (in longs)----------|-----------Unused------------------|
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*
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* || 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 |
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* 3 ||---------------------------------NumBitsSet------------------------------------|
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* </pre>
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*
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* The raw BitArray bits, if non-empty start at byte 32.
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*/
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template<typename A>
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bloom_filter_alloc<A> bloom_filter_alloc<A>::deserialize(std::istream& is, const A& allocator) {
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const uint8_t prelongs = read<uint8_t>(is);
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const uint8_t ser_ver = read<uint8_t>(is);
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const uint8_t family = read<uint8_t>(is);
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const uint8_t flags = read<uint8_t>(is);
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if (prelongs < 1 || prelongs > 4) {
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throw std::invalid_argument("Possible corruption: Incorrect number of preamble bytes specified in header");
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}
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if (ser_ver != SER_VER) {
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throw std::invalid_argument("Possible corruption: Unrecognized serialization version: " + std::to_string(ser_ver));
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}
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if (family != FAMILY_ID) {
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throw std::invalid_argument("Possible corruption: Incorrect Family ID for bloom filter. Found: " + std::to_string(family));
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}
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const bool is_empty = (flags & EMPTY_FLAG_MASK) != 0;
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const uint16_t num_hashes = read<uint16_t>(is);
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read<uint16_t>(is); // unused
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const uint64_t seed = read<uint64_t>(is);
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const uint32_t num_longs = read<uint32_t>(is); // sized in java longs
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read<uint32_t>(is); // unused
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// if empty, stop reading
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if (is_empty) {
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return bloom_filter_alloc<A>(num_longs << 6, num_hashes, seed, allocator);
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}
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const uint64_t num_bits_set = read<uint64_t>(is);
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const bool is_dirty = (num_bits_set == DIRTY_BITS_VALUE);
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// allocate memory
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const uint64_t num_bytes = num_longs << 3;
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AllocUint8 alloc(allocator);
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+
uint8_t* bit_array = alloc.allocate(num_bytes);
|
308
|
+
if (bit_array == nullptr) {
|
309
|
+
throw std::bad_alloc();
|
310
|
+
}
|
311
|
+
read(is, bit_array, num_bytes);
|
312
|
+
|
313
|
+
// pass to constructor
|
314
|
+
return bloom_filter_alloc<A>(seed, num_hashes, is_dirty, true, false, num_longs << 6, num_bits_set, bit_array, nullptr, allocator);
|
315
|
+
}
|
316
|
+
|
317
|
+
template<typename A>
|
318
|
+
const bloom_filter_alloc<A> bloom_filter_alloc<A>::wrap(const void* bytes, size_t length_bytes, const A& allocator) {
|
319
|
+
// read-only flag means we won't modify the memory, but cast away the const
|
320
|
+
return internal_deserialize_or_wrap(const_cast<void*>(bytes), length_bytes, true, true, allocator);
|
321
|
+
}
|
322
|
+
|
323
|
+
template<typename A>
|
324
|
+
bloom_filter_alloc<A> bloom_filter_alloc<A>::writable_wrap(void* bytes, size_t length_bytes, const A& allocator) {
|
325
|
+
return internal_deserialize_or_wrap(bytes, length_bytes, false, true, allocator);
|
326
|
+
}
|
327
|
+
|
328
|
+
template<typename A>
|
329
|
+
bloom_filter_alloc<A> bloom_filter_alloc<A>::internal_deserialize_or_wrap(void* bytes,
|
330
|
+
size_t length_bytes,
|
331
|
+
bool read_only,
|
332
|
+
bool wrap,
|
333
|
+
const A& allocator)
|
334
|
+
{
|
335
|
+
ensure_minimum_memory(length_bytes, 8);
|
336
|
+
if (bytes == nullptr) {
|
337
|
+
throw std::invalid_argument("Input data is null or empty");
|
338
|
+
}
|
339
|
+
const uint8_t* ptr = static_cast<const uint8_t*>(bytes);
|
340
|
+
const uint8_t* end_ptr = ptr + length_bytes;
|
341
|
+
const uint8_t prelongs = *ptr++;
|
342
|
+
const uint8_t ser_ver = *ptr++;
|
343
|
+
const uint8_t family = *ptr++;
|
344
|
+
const uint8_t flags = *ptr++;
|
345
|
+
|
346
|
+
if (prelongs < PREAMBLE_LONGS_EMPTY || prelongs > PREAMBLE_LONGS_STANDARD) {
|
347
|
+
throw std::invalid_argument("Possible corruption: Incorrect number of preamble bytes specified in header");
|
348
|
+
}
|
349
|
+
if (ser_ver != SER_VER) {
|
350
|
+
throw std::invalid_argument("Possible corruption: Unrecognized serialization version: " + std::to_string(ser_ver));
|
351
|
+
}
|
352
|
+
if (family != FAMILY_ID) {
|
353
|
+
throw std::invalid_argument("Possible corruption: Incorrect Family ID for bloom filter. Found: " + std::to_string(family));
|
354
|
+
}
|
355
|
+
|
356
|
+
const bool is_empty = (flags & EMPTY_FLAG_MASK) != 0;
|
357
|
+
|
358
|
+
ensure_minimum_memory(length_bytes, prelongs * sizeof(uint64_t));
|
359
|
+
|
360
|
+
uint16_t num_hashes;
|
361
|
+
ptr += copy_from_mem(ptr, num_hashes);
|
362
|
+
ptr += sizeof(uint16_t); // 16 bits unused after num_hashes
|
363
|
+
uint64_t seed;
|
364
|
+
ptr += copy_from_mem(ptr, seed);
|
365
|
+
|
366
|
+
uint32_t num_longs;
|
367
|
+
ptr += copy_from_mem(ptr, num_longs); // sized in java longs
|
368
|
+
ptr += sizeof(uint32_t); // unused 32 bits follow
|
369
|
+
|
370
|
+
// if empty, stop reading
|
371
|
+
if (wrap && is_empty && !read_only) {
|
372
|
+
throw std::invalid_argument("Cannot wrap an empty filter for writing");
|
373
|
+
} else if (is_empty) {
|
374
|
+
return bloom_filter_alloc<A>(num_longs << 6, num_hashes, seed, allocator);
|
375
|
+
}
|
376
|
+
|
377
|
+
uint64_t num_bits_set;
|
378
|
+
ptr += copy_from_mem(ptr, num_bits_set);
|
379
|
+
const bool is_dirty = (num_bits_set == DIRTY_BITS_VALUE);
|
380
|
+
|
381
|
+
uint8_t* bit_array;
|
382
|
+
uint8_t* memory;
|
383
|
+
if (wrap) {
|
384
|
+
memory = static_cast<uint8_t*>(bytes);
|
385
|
+
bit_array = memory + BIT_ARRAY_OFFSET_BYTES;
|
386
|
+
} else {
|
387
|
+
// allocate memory
|
388
|
+
memory = nullptr;
|
389
|
+
const uint64_t num_bytes = num_longs << 3;
|
390
|
+
ensure_minimum_memory(end_ptr - ptr, num_bytes);
|
391
|
+
AllocUint8 alloc(allocator);
|
392
|
+
bit_array = alloc.allocate(num_bytes);
|
393
|
+
if (bit_array == nullptr) {
|
394
|
+
throw std::bad_alloc();
|
395
|
+
}
|
396
|
+
copy_from_mem(ptr, bit_array, num_bytes);
|
397
|
+
}
|
398
|
+
|
399
|
+
// pass to constructor -- !wrap == is_owned_
|
400
|
+
return bloom_filter_alloc<A>(seed, num_hashes, is_dirty, !wrap, read_only, num_longs << 6, num_bits_set, bit_array, memory, allocator);
|
401
|
+
}
|
402
|
+
|
403
|
+
template<typename A>
|
404
|
+
void bloom_filter_alloc<A>::serialize(std::ostream& os) const {
|
405
|
+
// Should we serialize memory_ directly if it exists?
|
406
|
+
const uint8_t preamble_longs = is_empty() ? PREAMBLE_LONGS_EMPTY : PREAMBLE_LONGS_STANDARD;
|
407
|
+
write(os, preamble_longs);
|
408
|
+
const uint8_t serial_version = SER_VER;
|
409
|
+
write(os, serial_version);
|
410
|
+
const uint8_t family = FAMILY_ID;
|
411
|
+
write(os, family);
|
412
|
+
const uint8_t flags_byte = is_empty() ? EMPTY_FLAG_MASK : 0;
|
413
|
+
write(os, flags_byte);
|
414
|
+
|
415
|
+
write(os, num_hashes_);
|
416
|
+
write(os, static_cast<uint16_t>(0)); // 2 bytes unused
|
417
|
+
write(os, seed_);
|
418
|
+
write(os, static_cast<int32_t>(capacity_bits_ >> 6)); // sized in java longs
|
419
|
+
write(os, static_cast<uint32_t>(0)); // 4 bytes unused
|
420
|
+
|
421
|
+
if (!is_empty()) {
|
422
|
+
write(os, is_dirty_ ? DIRTY_BITS_VALUE : num_bits_set_);
|
423
|
+
write(os, bit_array_, capacity_bits_ >> 3);
|
424
|
+
}
|
425
|
+
|
426
|
+
os.flush();
|
427
|
+
}
|
428
|
+
|
429
|
+
template<typename A>
|
430
|
+
auto bloom_filter_alloc<A>::serialize(unsigned header_size_bytes) const -> vector_bytes {
|
431
|
+
// Should we serialize memory_ directly if it exists?
|
432
|
+
const size_t size = header_size_bytes + get_serialized_size_bytes();
|
433
|
+
vector_bytes bytes(size, 0, allocator_);
|
434
|
+
uint8_t* ptr = bytes.data() + header_size_bytes;
|
435
|
+
|
436
|
+
const uint8_t preamble_longs = is_empty() ? PREAMBLE_LONGS_EMPTY : PREAMBLE_LONGS_STANDARD;
|
437
|
+
ptr += copy_to_mem(preamble_longs, ptr);
|
438
|
+
const uint8_t serial_version = SER_VER;
|
439
|
+
ptr += copy_to_mem(serial_version, ptr);
|
440
|
+
const uint8_t family = FAMILY_ID;
|
441
|
+
ptr += copy_to_mem(family, ptr);
|
442
|
+
const uint8_t flags_byte = is_empty() ? EMPTY_FLAG_MASK : 0;
|
443
|
+
ptr += copy_to_mem(flags_byte, ptr);
|
444
|
+
|
445
|
+
ptr += copy_to_mem(num_hashes_, ptr);
|
446
|
+
ptr += copy_to_mem(static_cast<uint16_t>(0), ptr); // 2 bytes unused
|
447
|
+
ptr += copy_to_mem(seed_, ptr);
|
448
|
+
ptr += copy_to_mem(static_cast<int32_t>(capacity_bits_ >> 6), ptr); // sized in java longs
|
449
|
+
ptr += copy_to_mem(static_cast<uint32_t>(0), ptr); // 4 bytes unused
|
450
|
+
|
451
|
+
if (!is_empty()) {
|
452
|
+
ptr += copy_to_mem(is_dirty_ ? DIRTY_BITS_VALUE : num_bits_set_, ptr);
|
453
|
+
ptr += copy_to_mem(bit_array_, ptr, capacity_bits_ >> 3);
|
454
|
+
}
|
455
|
+
|
456
|
+
return bytes;
|
457
|
+
}
|
458
|
+
|
459
|
+
template<typename A>
|
460
|
+
size_t bloom_filter_alloc<A>::get_serialized_size_bytes() const {
|
461
|
+
return sizeof(uint64_t) * (is_empty() ? PREAMBLE_LONGS_EMPTY : PREAMBLE_LONGS_STANDARD + (capacity_bits_ >> 6));
|
462
|
+
}
|
463
|
+
|
464
|
+
template<typename A>
|
465
|
+
size_t bloom_filter_alloc<A>::get_serialized_size_bytes(uint64_t num_bits) {
|
466
|
+
if (num_bits == 0)
|
467
|
+
throw std::invalid_argument("Number of bits must be greater than zero");
|
468
|
+
|
469
|
+
size_t num_bytes = (num_bits + 63) >> 6;
|
470
|
+
return sizeof(uint64_t) * (PREAMBLE_LONGS_STANDARD + num_bytes);
|
471
|
+
}
|
472
|
+
|
473
|
+
template<typename A>
|
474
|
+
bool bloom_filter_alloc<A>::is_empty() const {
|
475
|
+
return !is_dirty_ && num_bits_set_ == 0;
|
476
|
+
}
|
477
|
+
|
478
|
+
template<typename A>
|
479
|
+
uint64_t bloom_filter_alloc<A>::get_bits_used() {
|
480
|
+
if (is_dirty_) {
|
481
|
+
num_bits_set_ = bit_array_ops::count_num_bits_set(bit_array_, capacity_bits_ >> 3);
|
482
|
+
is_dirty_ = false;
|
483
|
+
}
|
484
|
+
return num_bits_set_;
|
485
|
+
}
|
486
|
+
|
487
|
+
template<typename A>
|
488
|
+
uint64_t bloom_filter_alloc<A>::get_capacity() const {
|
489
|
+
return capacity_bits_;
|
490
|
+
}
|
491
|
+
|
492
|
+
template<typename A>
|
493
|
+
uint16_t bloom_filter_alloc<A>::get_num_hashes() const {
|
494
|
+
return num_hashes_;
|
495
|
+
}
|
496
|
+
|
497
|
+
template<typename A>
|
498
|
+
uint64_t bloom_filter_alloc<A>::get_seed() const {
|
499
|
+
return seed_;
|
500
|
+
}
|
501
|
+
|
502
|
+
template<typename A>
|
503
|
+
bool bloom_filter_alloc<A>::is_read_only() const {
|
504
|
+
return is_read_only_;
|
505
|
+
}
|
506
|
+
|
507
|
+
template<typename A>
|
508
|
+
bool bloom_filter_alloc<A>::is_wrapped() const {
|
509
|
+
return memory_ != nullptr;
|
510
|
+
}
|
511
|
+
|
512
|
+
template<typename A>
|
513
|
+
bool bloom_filter_alloc<A>::is_memory_owned() const {
|
514
|
+
return is_owned_;
|
515
|
+
}
|
516
|
+
|
517
|
+
template<typename A>
|
518
|
+
const uint8_t* bloom_filter_alloc<A>::get_wrapped_memory() const {
|
519
|
+
return memory_;
|
520
|
+
}
|
521
|
+
|
522
|
+
template<typename A>
|
523
|
+
void bloom_filter_alloc<A>::reset() {
|
524
|
+
if (is_read_only_) {
|
525
|
+
throw std::logic_error("Cannot reset a read-only filter");
|
526
|
+
}
|
527
|
+
update_num_bits_set(0);
|
528
|
+
std::fill_n(bit_array_, capacity_bits_ >> 3, 0);
|
529
|
+
}
|
530
|
+
|
531
|
+
template<typename A>
|
532
|
+
void bloom_filter_alloc<A>::update_num_bits_set(uint64_t num_bits_set) {
|
533
|
+
num_bits_set_ = num_bits_set;
|
534
|
+
is_dirty_ = false;
|
535
|
+
if (memory_ != nullptr && !is_read_only_) {
|
536
|
+
copy_to_mem(num_bits_set_, memory_ + NUM_BITS_SET_OFFSET_BYTES);
|
537
|
+
}
|
538
|
+
}
|
539
|
+
|
540
|
+
// UPDATE METHODS
|
541
|
+
|
542
|
+
template<typename A>
|
543
|
+
void bloom_filter_alloc<A>::update(const std::string& item) {
|
544
|
+
if (item.empty()) return;
|
545
|
+
const uint64_t h0 = XXHash64::hash(item.data(), item.size(), seed_);
|
546
|
+
const uint64_t h1 = XXHash64::hash(item.data(), item.size(), h0);
|
547
|
+
internal_update(h0, h1);
|
548
|
+
}
|
549
|
+
|
550
|
+
template<typename A>
|
551
|
+
void bloom_filter_alloc<A>::update(uint64_t item) {
|
552
|
+
const uint64_t h0 = XXHash64::hash(&item, sizeof(item), seed_);
|
553
|
+
const uint64_t h1 = XXHash64::hash(&item, sizeof(item), h0);
|
554
|
+
internal_update(h0, h1);
|
555
|
+
}
|
556
|
+
|
557
|
+
template<typename A>
|
558
|
+
void bloom_filter_alloc<A>::update(uint32_t item) {
|
559
|
+
update(static_cast<uint64_t>(item));
|
560
|
+
}
|
561
|
+
|
562
|
+
template<typename A>
|
563
|
+
void bloom_filter_alloc<A>::update(uint16_t item) {
|
564
|
+
update(static_cast<uint64_t>(item));
|
565
|
+
}
|
566
|
+
|
567
|
+
template<typename A>
|
568
|
+
void bloom_filter_alloc<A>::update(uint8_t item) {
|
569
|
+
update(static_cast<uint64_t>(item));
|
570
|
+
}
|
571
|
+
|
572
|
+
template<typename A>
|
573
|
+
void bloom_filter_alloc<A>::update(int64_t item) {
|
574
|
+
const uint64_t h0 = XXHash64::hash(&item, sizeof(item), seed_);
|
575
|
+
const uint64_t h1 = XXHash64::hash(&item, sizeof(item), h0);
|
576
|
+
internal_update(h0, h1);
|
577
|
+
}
|
578
|
+
|
579
|
+
template<typename A>
|
580
|
+
void bloom_filter_alloc<A>::update(int32_t item) {
|
581
|
+
update(static_cast<int64_t>(item));
|
582
|
+
}
|
583
|
+
|
584
|
+
template<typename A>
|
585
|
+
void bloom_filter_alloc<A>::update(int16_t item) {
|
586
|
+
update(static_cast<int64_t>(item));
|
587
|
+
}
|
588
|
+
|
589
|
+
template<typename A>
|
590
|
+
void bloom_filter_alloc<A>::update(int8_t item) {
|
591
|
+
update(static_cast<int64_t>(item));
|
592
|
+
}
|
593
|
+
|
594
|
+
template<typename A>
|
595
|
+
void bloom_filter_alloc<A>::update(double item) {
|
596
|
+
union {
|
597
|
+
int64_t long_value;
|
598
|
+
double double_value;
|
599
|
+
} ldu;
|
600
|
+
ldu.double_value = static_cast<double>(item);
|
601
|
+
if (item == 0.0) {
|
602
|
+
ldu.double_value = 0.0; // canonicalize -0.0 to 0.0
|
603
|
+
} else if (std::isnan(ldu.double_value)) {
|
604
|
+
ldu.long_value = 0x7ff8000000000000L; // canonicalize NaN using value from Java's Double.doubleToLongBits()
|
605
|
+
}
|
606
|
+
const uint64_t h0 = XXHash64::hash(&ldu, sizeof(ldu), seed_);
|
607
|
+
const uint64_t h1 = XXHash64::hash(&ldu, sizeof(ldu), h0);
|
608
|
+
internal_update(h0, h1);
|
609
|
+
}
|
610
|
+
|
611
|
+
template<typename A>
|
612
|
+
void bloom_filter_alloc<A>::update(float item) {
|
613
|
+
update(static_cast<double>(item));
|
614
|
+
}
|
615
|
+
|
616
|
+
template<typename A>
|
617
|
+
void bloom_filter_alloc<A>::update(const void* item, size_t size) {
|
618
|
+
if (item == nullptr || size == 0) return;
|
619
|
+
const uint64_t h0 = XXHash64::hash(item, size, seed_);
|
620
|
+
const uint64_t h1 = XXHash64::hash(item, size, h0);
|
621
|
+
internal_update(h0, h1);
|
622
|
+
}
|
623
|
+
|
624
|
+
template<typename A>
|
625
|
+
void bloom_filter_alloc<A>::internal_update(uint64_t h0, uint64_t h1) {
|
626
|
+
if (is_read_only_) {
|
627
|
+
throw std::logic_error("Cannot update a read-only filter");
|
628
|
+
}
|
629
|
+
const uint64_t num_bits = get_capacity();
|
630
|
+
for (uint16_t i = 1; i <= num_hashes_; i++) {
|
631
|
+
const uint64_t hash_index = ((h0 + i * h1) >> 1) % num_bits;
|
632
|
+
bit_array_ops::set_bit(bit_array_, hash_index);
|
633
|
+
}
|
634
|
+
is_dirty_ = true;
|
635
|
+
}
|
636
|
+
|
637
|
+
// QUERY-AND-UPDATE METHODS
|
638
|
+
|
639
|
+
template<typename A>
|
640
|
+
bool bloom_filter_alloc<A>::query_and_update(const std::string& item) {
|
641
|
+
if (item.empty()) return false;
|
642
|
+
const uint64_t h0 = XXHash64::hash(item.data(), item.size(), seed_);
|
643
|
+
const uint64_t h1 = XXHash64::hash(item.data(), item.size(), h0);
|
644
|
+
return internal_query_and_update(h0, h1);
|
645
|
+
}
|
646
|
+
|
647
|
+
template<typename A>
|
648
|
+
bool bloom_filter_alloc<A>::query_and_update(uint64_t item) {
|
649
|
+
const uint64_t h0 = XXHash64::hash(&item, sizeof(item), seed_);
|
650
|
+
const uint64_t h1 = XXHash64::hash(&item, sizeof(item), h0);
|
651
|
+
return internal_query_and_update(h0, h1);
|
652
|
+
}
|
653
|
+
|
654
|
+
template<typename A>
|
655
|
+
bool bloom_filter_alloc<A>::query_and_update(uint32_t item) {
|
656
|
+
return query_and_update(static_cast<uint64_t>(item));
|
657
|
+
}
|
658
|
+
|
659
|
+
template<typename A>
|
660
|
+
bool bloom_filter_alloc<A>::query_and_update(uint16_t item) {
|
661
|
+
return query_and_update(static_cast<uint64_t>(item));
|
662
|
+
}
|
663
|
+
|
664
|
+
template<typename A>
|
665
|
+
bool bloom_filter_alloc<A>::query_and_update(uint8_t item) {
|
666
|
+
return query_and_update(static_cast<uint64_t>(item));
|
667
|
+
}
|
668
|
+
|
669
|
+
template<typename A>
|
670
|
+
bool bloom_filter_alloc<A>::query_and_update(int64_t item) {
|
671
|
+
const uint64_t h0 = XXHash64::hash(&item, sizeof(item), seed_);
|
672
|
+
const uint64_t h1 = XXHash64::hash(&item, sizeof(item), h0);
|
673
|
+
return internal_query_and_update(h0, h1);
|
674
|
+
}
|
675
|
+
|
676
|
+
template<typename A>
|
677
|
+
bool bloom_filter_alloc<A>::query_and_update(int32_t item) {
|
678
|
+
return query_and_update(static_cast<int64_t>(item));
|
679
|
+
}
|
680
|
+
|
681
|
+
template<typename A>
|
682
|
+
bool bloom_filter_alloc<A>::query_and_update(int16_t item) {
|
683
|
+
return query_and_update(static_cast<int64_t>(item));
|
684
|
+
}
|
685
|
+
|
686
|
+
template<typename A>
|
687
|
+
bool bloom_filter_alloc<A>::query_and_update(int8_t item) {
|
688
|
+
return query_and_update(static_cast<int64_t>(item));
|
689
|
+
}
|
690
|
+
|
691
|
+
template<typename A>
|
692
|
+
bool bloom_filter_alloc<A>::query_and_update(double item) {
|
693
|
+
union {
|
694
|
+
int64_t long_value;
|
695
|
+
double double_value;
|
696
|
+
} ldu;
|
697
|
+
ldu.double_value = item;
|
698
|
+
if (item == 0.0) {
|
699
|
+
ldu.double_value = 0.0; // canonicalize -0.0 to 0.0
|
700
|
+
} else if (std::isnan(ldu.double_value)) {
|
701
|
+
ldu.long_value = 0x7ff8000000000000L; // canonicalize NaN using value from Java's Double.doubleToLongBits()
|
702
|
+
}
|
703
|
+
const uint64_t h0 = XXHash64::hash(&ldu, sizeof(ldu), seed_);
|
704
|
+
const uint64_t h1 = XXHash64::hash(&ldu, sizeof(ldu), h0);
|
705
|
+
return internal_query_and_update(h0, h1);
|
706
|
+
}
|
707
|
+
|
708
|
+
template<typename A>
|
709
|
+
bool bloom_filter_alloc<A>::query_and_update(float item) {
|
710
|
+
return query_and_update(static_cast<double>(item));
|
711
|
+
}
|
712
|
+
|
713
|
+
template<typename A>
|
714
|
+
bool bloom_filter_alloc<A>::query_and_update(const void* item, size_t size) {
|
715
|
+
if (item == nullptr || size == 0) return false;
|
716
|
+
const uint64_t h0 = XXHash64::hash(item, size, seed_);
|
717
|
+
const uint64_t h1 = XXHash64::hash(item, size, h0);
|
718
|
+
return internal_query_and_update(h0, h1);
|
719
|
+
}
|
720
|
+
|
721
|
+
template<typename A>
|
722
|
+
bool bloom_filter_alloc<A>::internal_query_and_update(uint64_t h0, uint64_t h1) {
|
723
|
+
if (is_read_only_) {
|
724
|
+
throw std::logic_error("Cannot update a read-only filter");
|
725
|
+
}
|
726
|
+
const uint64_t num_bits = get_capacity();
|
727
|
+
bool value_exists = true;
|
728
|
+
for (uint16_t i = 1; i <= num_hashes_; i++) {
|
729
|
+
const uint64_t hash_index = ((h0 + i * h1) >> 1) % num_bits;
|
730
|
+
bool value = bit_array_ops::get_and_set_bit(bit_array_, hash_index);
|
731
|
+
update_num_bits_set(num_bits_set_ + (value ? 0 : 1));
|
732
|
+
value_exists &= value;
|
733
|
+
}
|
734
|
+
return value_exists;
|
735
|
+
}
|
736
|
+
|
737
|
+
// QUERY METHODS
|
738
|
+
|
739
|
+
template<typename A>
|
740
|
+
bool bloom_filter_alloc<A>::query(const std::string& item) const {
|
741
|
+
if (item.empty()) return false;
|
742
|
+
const uint64_t h0 = XXHash64::hash(item.data(), item.size(), seed_);
|
743
|
+
const uint64_t h1 = XXHash64::hash(item.data(), item.size(), h0);
|
744
|
+
return internal_query(h0, h1);
|
745
|
+
}
|
746
|
+
|
747
|
+
template<typename A>
|
748
|
+
bool bloom_filter_alloc<A>::query(uint64_t item) const {
|
749
|
+
const uint64_t h0 = XXHash64::hash(&item, sizeof(item), seed_);
|
750
|
+
const uint64_t h1 = XXHash64::hash(&item, sizeof(item), h0);
|
751
|
+
return internal_query(h0, h1);
|
752
|
+
}
|
753
|
+
|
754
|
+
template<typename A>
|
755
|
+
bool bloom_filter_alloc<A>::query(uint32_t item) const {
|
756
|
+
return query(static_cast<uint64_t>(item));
|
757
|
+
}
|
758
|
+
|
759
|
+
template<typename A>
|
760
|
+
bool bloom_filter_alloc<A>::query(uint16_t item) const {
|
761
|
+
return query(static_cast<uint64_t>(item));
|
762
|
+
}
|
763
|
+
|
764
|
+
template<typename A>
|
765
|
+
bool bloom_filter_alloc<A>::query(uint8_t item) const {
|
766
|
+
return query(static_cast<uint64_t>(item));
|
767
|
+
}
|
768
|
+
|
769
|
+
template<typename A>
|
770
|
+
bool bloom_filter_alloc<A>::query(int64_t item) const {
|
771
|
+
const uint64_t h0 = XXHash64::hash(&item, sizeof(item), seed_);
|
772
|
+
const uint64_t h1 = XXHash64::hash(&item, sizeof(item), h0);
|
773
|
+
return internal_query(h0, h1);
|
774
|
+
}
|
775
|
+
|
776
|
+
template<typename A>
|
777
|
+
bool bloom_filter_alloc<A>::query(int32_t item) const {
|
778
|
+
return query(static_cast<int64_t>(item));
|
779
|
+
}
|
780
|
+
|
781
|
+
template<typename A>
|
782
|
+
bool bloom_filter_alloc<A>::query(int16_t item) const {
|
783
|
+
return query(static_cast<int64_t>(item));
|
784
|
+
}
|
785
|
+
|
786
|
+
template<typename A>
|
787
|
+
bool bloom_filter_alloc<A>::query(int8_t item) const {
|
788
|
+
return query(static_cast<int64_t>(item));
|
789
|
+
}
|
790
|
+
|
791
|
+
template<typename A>
|
792
|
+
bool bloom_filter_alloc<A>::query(double item) const {
|
793
|
+
union {
|
794
|
+
int64_t long_value;
|
795
|
+
double double_value;
|
796
|
+
} ldu;
|
797
|
+
ldu.double_value = static_cast<double>(item);
|
798
|
+
if (item == 0.0) {
|
799
|
+
ldu.double_value = 0.0; // canonicalize -0.0 to 0.0
|
800
|
+
} else if (std::isnan(ldu.double_value)) {
|
801
|
+
ldu.long_value = 0x7ff8000000000000L; // canonicalize NaN using value from Java's Double.doubleToLongBits()
|
802
|
+
}
|
803
|
+
const uint64_t h0 = XXHash64::hash(&ldu, sizeof(ldu), seed_);
|
804
|
+
const uint64_t h1 = XXHash64::hash(&ldu, sizeof(ldu), h0);
|
805
|
+
return internal_query(h0, h1);
|
806
|
+
}
|
807
|
+
|
808
|
+
template<typename A>
|
809
|
+
bool bloom_filter_alloc<A>::query(float item) const {
|
810
|
+
return query(static_cast<double>(item));
|
811
|
+
}
|
812
|
+
|
813
|
+
template<typename A>
|
814
|
+
bool bloom_filter_alloc<A>::query(const void* item, size_t size) const {
|
815
|
+
if (item == nullptr || size == 0) return false;
|
816
|
+
const uint64_t h0 = XXHash64::hash(item, size, seed_);
|
817
|
+
const uint64_t h1 = XXHash64::hash(item, size, h0);
|
818
|
+
return internal_query(h0, h1);
|
819
|
+
}
|
820
|
+
|
821
|
+
template<typename A>
|
822
|
+
bool bloom_filter_alloc<A>::internal_query(uint64_t h0, uint64_t h1) const {
|
823
|
+
if (is_empty()) return false;
|
824
|
+
const uint64_t num_bits = get_capacity();
|
825
|
+
for (uint16_t i = 1; i <= num_hashes_; i++) {
|
826
|
+
const uint64_t hash_index = ((h0 + i * h1) >> 1) % num_bits;
|
827
|
+
if (!bit_array_ops::get_bit(bit_array_, hash_index))
|
828
|
+
return false;
|
829
|
+
}
|
830
|
+
return true;
|
831
|
+
}
|
832
|
+
|
833
|
+
// OTHER METHODS
|
834
|
+
|
835
|
+
template<typename A>
|
836
|
+
bool bloom_filter_alloc<A>::is_compatible(const bloom_filter_alloc& other) const {
|
837
|
+
return seed_ == other.seed_
|
838
|
+
&& num_hashes_ == other.num_hashes_
|
839
|
+
&& get_capacity() == other.get_capacity()
|
840
|
+
;
|
841
|
+
}
|
842
|
+
|
843
|
+
template<typename A>
|
844
|
+
void bloom_filter_alloc<A>::union_with(const bloom_filter_alloc& other) {
|
845
|
+
if (!is_compatible(other)) {
|
846
|
+
throw std::invalid_argument("Incompatible bloom filters");
|
847
|
+
}
|
848
|
+
uint64_t bits_set = bit_array_ops::union_with(bit_array_, other.bit_array_, capacity_bits_ >> 3);
|
849
|
+
update_num_bits_set(bits_set);
|
850
|
+
}
|
851
|
+
|
852
|
+
template<typename A>
|
853
|
+
void bloom_filter_alloc<A>::intersect(const bloom_filter_alloc& other) {
|
854
|
+
if (!is_compatible(other)) {
|
855
|
+
throw std::invalid_argument("Incompatible bloom filters");
|
856
|
+
}
|
857
|
+
uint64_t bits_set = bit_array_ops::intersect(bit_array_, other.bit_array_, capacity_bits_ >> 3);
|
858
|
+
update_num_bits_set(bits_set);
|
859
|
+
}
|
860
|
+
|
861
|
+
template<typename A>
|
862
|
+
void bloom_filter_alloc<A>::invert() {
|
863
|
+
uint64_t bits_set = bit_array_ops::invert(bit_array_, capacity_bits_ >> 3);
|
864
|
+
update_num_bits_set(bits_set);
|
865
|
+
}
|
866
|
+
|
867
|
+
template<typename A>
|
868
|
+
string<A> bloom_filter_alloc<A>::to_string(bool print_filter) const {
|
869
|
+
// Using a temporary stream for implementation here does not comply with AllocatorAwareContainer requirements.
|
870
|
+
// The stream does not support passing an allocator instance, and alternatives are complicated.
|
871
|
+
std::ostringstream oss;
|
872
|
+
uint64_t num_bits_set = num_bits_set_;
|
873
|
+
if (is_dirty_) {
|
874
|
+
num_bits_set = bit_array_ops::count_num_bits_set(bit_array_, capacity_bits_ >> 3);
|
875
|
+
}
|
876
|
+
|
877
|
+
oss << "### Bloom Filter Summary:" << std::endl;
|
878
|
+
oss << " num_bits : " << get_capacity() << std::endl;
|
879
|
+
oss << " num_hashes : " << num_hashes_ << std::endl;
|
880
|
+
oss << " seed : " << seed_ << std::endl;
|
881
|
+
oss << " is_dirty : " << (is_dirty_ ? "true" : "false") << std::endl;
|
882
|
+
oss << " bits_used : " << num_bits_set << std::endl;
|
883
|
+
oss << " fill % : " << (num_bits_set * 100.0) / get_capacity() << std::endl;
|
884
|
+
oss << "### End filter summary" << std::endl;
|
885
|
+
|
886
|
+
if (print_filter) {
|
887
|
+
uint64_t num_blocks = capacity_bits_ >> 6; // groups of 64 bits
|
888
|
+
for (uint64_t i = 0; i < num_blocks; ++i) {
|
889
|
+
oss << i << ": ";
|
890
|
+
for (uint64_t j = 0; j < 8; ++j) { // bytes w/in a block
|
891
|
+
for (uint64_t b = 0; b < 8; ++b) { // bits w/in a byte
|
892
|
+
oss << ((bit_array_[i * 8 + j] & (1 << b)) ? "1" : "0");
|
893
|
+
}
|
894
|
+
oss << " ";
|
895
|
+
}
|
896
|
+
oss << std::endl;
|
897
|
+
}
|
898
|
+
oss << std::endl;
|
899
|
+
}
|
900
|
+
|
901
|
+
oss << std::endl;
|
902
|
+
return string<A>(oss.str(), allocator_);
|
903
|
+
}
|
904
|
+
|
905
|
+
|
906
|
+
} // namespace datasketches
|
907
|
+
|
908
|
+
#endif // _BLOOM_FILTER_IMPL_HPP_
|