datasketches 0.2.4 → 0.2.5
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- checksums.yaml +4 -4
- data/CHANGELOG.md +4 -0
- data/README.md +1 -1
- data/ext/datasketches/kll_wrapper.cpp +5 -1
- data/lib/datasketches/version.rb +1 -1
- data/vendor/datasketches-cpp/CMakeLists.txt +4 -3
- data/vendor/datasketches-cpp/common/CMakeLists.txt +4 -0
- data/vendor/datasketches-cpp/common/include/binomial_bounds.hpp +1 -0
- data/vendor/datasketches-cpp/common/include/common_defs.hpp +14 -0
- data/vendor/datasketches-cpp/{kll → common}/include/kolmogorov_smirnov.hpp +5 -3
- data/vendor/datasketches-cpp/{kll → common}/include/kolmogorov_smirnov_impl.hpp +13 -16
- data/vendor/datasketches-cpp/common/include/quantile_sketch_sorted_view.hpp +121 -0
- data/vendor/datasketches-cpp/common/include/quantile_sketch_sorted_view_impl.hpp +91 -0
- data/vendor/datasketches-cpp/common/test/test_type.hpp +2 -0
- data/vendor/datasketches-cpp/cpc/include/cpc_compressor_impl.hpp +1 -0
- data/vendor/datasketches-cpp/cpc/include/cpc_confidence.hpp +1 -0
- data/vendor/datasketches-cpp/cpc/include/cpc_union_impl.hpp +2 -0
- data/vendor/datasketches-cpp/cpc/test/cpc_sketch_test.cpp +1 -0
- data/vendor/datasketches-cpp/cpc/test/cpc_union_test.cpp +2 -0
- data/vendor/datasketches-cpp/fi/include/frequent_items_sketch.hpp +37 -5
- data/vendor/datasketches-cpp/fi/include/frequent_items_sketch_impl.hpp +25 -9
- data/vendor/datasketches-cpp/fi/test/frequent_items_sketch_custom_type_test.cpp +2 -1
- data/vendor/datasketches-cpp/fi/test/frequent_items_sketch_test.cpp +1 -0
- data/vendor/datasketches-cpp/hll/include/AuxHashMap-internal.hpp +2 -0
- data/vendor/datasketches-cpp/hll/include/CompositeInterpolationXTable-internal.hpp +1 -0
- data/vendor/datasketches-cpp/hll/include/CouponHashSet-internal.hpp +2 -2
- data/vendor/datasketches-cpp/hll/include/CouponList-internal.hpp +1 -0
- data/vendor/datasketches-cpp/hll/include/HllSketchImpl-internal.hpp +2 -0
- data/vendor/datasketches-cpp/hll/include/HllSketchImplFactory.hpp +2 -0
- data/vendor/datasketches-cpp/hll/test/AuxHashMapTest.cpp +1 -0
- data/vendor/datasketches-cpp/hll/test/CouponHashSetTest.cpp +1 -0
- data/vendor/datasketches-cpp/hll/test/CouponListTest.cpp +2 -0
- data/vendor/datasketches-cpp/hll/test/HllArrayTest.cpp +1 -0
- data/vendor/datasketches-cpp/hll/test/HllSketchTest.cpp +59 -0
- data/vendor/datasketches-cpp/hll/test/HllUnionTest.cpp +2 -0
- data/vendor/datasketches-cpp/hll/test/TablesTest.cpp +1 -0
- data/vendor/datasketches-cpp/kll/CMakeLists.txt +0 -4
- data/vendor/datasketches-cpp/kll/include/kll_helper.hpp +0 -4
- data/vendor/datasketches-cpp/kll/include/kll_helper_impl.hpp +3 -0
- data/vendor/datasketches-cpp/kll/include/kll_sketch.hpp +96 -42
- data/vendor/datasketches-cpp/kll/include/kll_sketch_impl.hpp +105 -127
- data/vendor/datasketches-cpp/kll/test/kll_sketch_test.cpp +94 -25
- data/vendor/datasketches-cpp/kll/test/kolmogorov_smirnov_test.cpp +1 -1
- data/vendor/datasketches-cpp/pyproject.toml +1 -1
- data/vendor/datasketches-cpp/python/CMakeLists.txt +8 -1
- data/vendor/datasketches-cpp/python/README.md +7 -0
- data/vendor/datasketches-cpp/python/src/datasketches.cpp +4 -0
- data/vendor/datasketches-cpp/python/src/fi_wrapper.cpp +6 -1
- data/vendor/datasketches-cpp/python/src/kll_wrapper.cpp +48 -13
- data/vendor/datasketches-cpp/python/src/ks_wrapper.cpp +68 -0
- data/vendor/datasketches-cpp/python/src/quantiles_wrapper.cpp +240 -0
- data/vendor/datasketches-cpp/python/src/req_wrapper.cpp +9 -2
- data/vendor/datasketches-cpp/python/src/vector_of_kll.cpp +1 -0
- data/vendor/datasketches-cpp/python/tests/kll_test.py +10 -4
- data/vendor/datasketches-cpp/python/tests/quantiles_test.py +126 -0
- data/vendor/datasketches-cpp/quantiles/CMakeLists.txt +42 -0
- data/vendor/datasketches-cpp/quantiles/include/quantiles_sketch.hpp +641 -0
- data/vendor/datasketches-cpp/quantiles/include/quantiles_sketch_impl.hpp +1309 -0
- data/vendor/datasketches-cpp/quantiles/test/CMakeLists.txt +44 -0
- data/vendor/datasketches-cpp/quantiles/test/Qk128_n1000_v0.3.0.sk +0 -0
- data/vendor/datasketches-cpp/quantiles/test/Qk128_n1000_v0.6.0.sk +0 -0
- data/vendor/datasketches-cpp/quantiles/test/Qk128_n1000_v0.8.0.sk +0 -0
- data/vendor/datasketches-cpp/quantiles/test/Qk128_n1000_v0.8.3.sk +0 -0
- data/vendor/datasketches-cpp/quantiles/test/Qk128_n50_v0.3.0.sk +0 -0
- data/vendor/datasketches-cpp/quantiles/test/Qk128_n50_v0.6.0.sk +0 -0
- data/vendor/datasketches-cpp/quantiles/test/Qk128_n50_v0.8.0.sk +0 -0
- data/vendor/datasketches-cpp/quantiles/test/Qk128_n50_v0.8.3.sk +0 -0
- data/vendor/datasketches-cpp/quantiles/test/kolmogorov_smirnov_test.cpp +110 -0
- data/vendor/datasketches-cpp/quantiles/test/quantiles_compatibility_test.cpp +129 -0
- data/vendor/datasketches-cpp/quantiles/test/quantiles_sketch_test.cpp +912 -0
- data/vendor/datasketches-cpp/req/CMakeLists.txt +0 -2
- data/vendor/datasketches-cpp/req/include/req_common.hpp +0 -5
- data/vendor/datasketches-cpp/req/include/req_compactor_impl.hpp +3 -2
- data/vendor/datasketches-cpp/req/include/req_sketch.hpp +62 -23
- data/vendor/datasketches-cpp/req/include/req_sketch_impl.hpp +62 -59
- data/vendor/datasketches-cpp/req/test/req_sketch_test.cpp +5 -0
- data/vendor/datasketches-cpp/sampling/include/var_opt_sketch.hpp +44 -7
- data/vendor/datasketches-cpp/sampling/include/var_opt_sketch_impl.hpp +31 -26
- data/vendor/datasketches-cpp/sampling/include/var_opt_union.hpp +41 -6
- data/vendor/datasketches-cpp/sampling/include/var_opt_union_impl.hpp +25 -9
- data/vendor/datasketches-cpp/sampling/test/var_opt_allocation_test.cpp +2 -2
- data/vendor/datasketches-cpp/sampling/test/var_opt_sketch_test.cpp +1 -0
- data/vendor/datasketches-cpp/sampling/test/var_opt_union_test.cpp +1 -0
- data/vendor/datasketches-cpp/setup.py +1 -1
- data/vendor/datasketches-cpp/theta/include/bounds_on_ratios_in_sampled_sets.hpp +1 -0
- data/vendor/datasketches-cpp/theta/include/compact_theta_sketch_parser_impl.hpp +8 -6
- data/vendor/datasketches-cpp/theta/include/theta_intersection_base_impl.hpp +1 -0
- data/vendor/datasketches-cpp/theta/include/theta_set_difference_base_impl.hpp +1 -0
- data/vendor/datasketches-cpp/theta/include/theta_sketch_impl.hpp +7 -45
- data/vendor/datasketches-cpp/theta/include/theta_union_base_impl.hpp +1 -0
- data/vendor/datasketches-cpp/theta/include/theta_update_sketch_base_impl.hpp +1 -0
- data/vendor/datasketches-cpp/theta/test/theta_a_not_b_test.cpp +2 -0
- data/vendor/datasketches-cpp/theta/test/theta_intersection_test.cpp +2 -0
- data/vendor/datasketches-cpp/theta/test/theta_setop_test.cpp +1 -0
- data/vendor/datasketches-cpp/theta/test/theta_sketch_test.cpp +29 -1
- data/vendor/datasketches-cpp/theta/test/theta_union_test.cpp +2 -0
- data/vendor/datasketches-cpp/tuple/include/tuple_sketch.hpp +16 -0
- data/vendor/datasketches-cpp/tuple/include/tuple_sketch_impl.hpp +1 -0
- data/vendor/datasketches-cpp/tuple/test/tuple_a_not_b_test.cpp +1 -0
- data/vendor/datasketches-cpp/tuple/test/tuple_intersection_test.cpp +1 -0
- data/vendor/datasketches-cpp/tuple/test/tuple_union_test.cpp +1 -0
- metadata +25 -9
- data/vendor/datasketches-cpp/kll/include/kll_quantile_calculator.hpp +0 -75
- data/vendor/datasketches-cpp/kll/include/kll_quantile_calculator_impl.hpp +0 -184
- data/vendor/datasketches-cpp/req/include/req_quantile_calculator.hpp +0 -69
- data/vendor/datasketches-cpp/req/include/req_quantile_calculator_impl.hpp +0 -60
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/*
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* Licensed to the Apache Software Foundation (ASF) under one
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* or more contributor license agreements. See the NOTICE file
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* distributed with this work for additional information
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* regarding copyright ownership. The ASF licenses this file
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* to you under the Apache License, Version 2.0 (the
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* "License"); you may not use this file except in compliance
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* with the License. You may obtain a copy of the License at
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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* Unless required by applicable law or agreed to in writing,
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* software distributed under the License is distributed on an
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* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
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* KIND, either express or implied. See the License for the
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* specific language governing permissions and limitations
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* under the License.
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*/
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#ifndef _QUANTILES_SKETCH_IMPL_HPP_
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#define _QUANTILES_SKETCH_IMPL_HPP_
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#include <cmath>
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#include <algorithm>
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#include <stdexcept>
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#include <iomanip>
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#include <sstream>
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#include "common_defs.hpp"
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#include "count_zeros.hpp"
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#include "conditional_forward.hpp"
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#include "quantiles_sketch.hpp"
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namespace datasketches {
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template<typename T, typename C, typename A>
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quantiles_sketch<T, C, A>::quantiles_sketch(uint16_t k, const A& allocator):
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allocator_(allocator),
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k_(k),
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n_(0),
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bit_pattern_(0),
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base_buffer_(allocator_),
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levels_(allocator_),
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min_value_(nullptr),
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max_value_(nullptr),
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is_sorted_(true)
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{
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check_k(k_);
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base_buffer_.reserve(2 * std::min(quantiles_constants::MIN_K, k));
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}
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template<typename T, typename C, typename A>
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quantiles_sketch<T, C, A>::quantiles_sketch(const quantiles_sketch& other):
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allocator_(other.allocator_),
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k_(other.k_),
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n_(other.n_),
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bit_pattern_(other.bit_pattern_),
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base_buffer_(other.base_buffer_),
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levels_(other.levels_),
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min_value_(nullptr),
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max_value_(nullptr),
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is_sorted_(other.is_sorted_)
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{
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if (other.min_value_ != nullptr) min_value_ = new (allocator_.allocate(1)) T(*other.min_value_);
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if (other.max_value_ != nullptr) max_value_ = new (allocator_.allocate(1)) T(*other.max_value_);
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for (size_t i = 0; i < levels_.size(); ++i) {
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if (levels_[i].capacity() != other.levels_[i].capacity()) {
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levels_[i].reserve(other.levels_[i].capacity());
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}
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}
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}
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template<typename T, typename C, typename A>
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quantiles_sketch<T, C, A>::quantiles_sketch(quantiles_sketch&& other) noexcept:
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allocator_(other.allocator_),
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k_(other.k_),
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n_(other.n_),
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bit_pattern_(other.bit_pattern_),
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base_buffer_(std::move(other.base_buffer_)),
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levels_(std::move(other.levels_)),
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min_value_(other.min_value_),
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max_value_(other.max_value_),
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is_sorted_(other.is_sorted_)
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{
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other.min_value_ = nullptr;
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other.max_value_ = nullptr;
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}
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template<typename T, typename C, typename A>
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quantiles_sketch<T, C, A>& quantiles_sketch<T, C, A>::operator=(const quantiles_sketch& other) {
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quantiles_sketch<T, C, A> copy(other);
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std::swap(allocator_, copy.allocator_);
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std::swap(k_, copy.k_);
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std::swap(n_, copy.n_);
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std::swap(bit_pattern_, copy.bit_pattern_);
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std::swap(base_buffer_, copy.base_buffer_);
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std::swap(levels_, copy.levels_);
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std::swap(min_value_, copy.min_value_);
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std::swap(max_value_, copy.max_value_);
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std::swap(is_sorted_, copy.is_sorted_);
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return *this;
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}
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template<typename T, typename C, typename A>
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quantiles_sketch<T, C, A>& quantiles_sketch<T, C, A>::operator=(quantiles_sketch&& other) noexcept {
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std::swap(allocator_, other.allocator_);
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std::swap(k_, other.k_);
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std::swap(n_, other.n_);
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std::swap(bit_pattern_, other.bit_pattern_);
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std::swap(base_buffer_, other.base_buffer_);
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std::swap(levels_, other.levels_);
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std::swap(min_value_, other.min_value_);
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std::swap(max_value_, other.max_value_);
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std::swap(is_sorted_, other.is_sorted_);
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return *this;
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}
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template<typename T, typename C, typename A>
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quantiles_sketch<T, C, A>::quantiles_sketch(uint16_t k, uint64_t n, uint64_t bit_pattern,
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Level&& base_buffer, VectorLevels&& levels,
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std::unique_ptr<T, item_deleter> min_value, std::unique_ptr<T, item_deleter> max_value,
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bool is_sorted, const A& allocator) :
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allocator_(allocator),
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k_(k),
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n_(n),
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bit_pattern_(bit_pattern),
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base_buffer_(std::move(base_buffer)),
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levels_(std::move(levels)),
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min_value_(min_value.release()),
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max_value_(max_value.release()),
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is_sorted_(is_sorted)
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{
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uint32_t item_count = base_buffer_.size();
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for (Level& lvl : levels_) {
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item_count += lvl.size();
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}
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if (item_count != compute_retained_items(k_, n_))
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throw std::logic_error("Item count does not match value computed from k, n");
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}
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template<typename T, typename C, typename A>
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quantiles_sketch<T, C, A>::~quantiles_sketch() {
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if (min_value_ != nullptr) {
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min_value_->~T();
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allocator_.deallocate(min_value_, 1);
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}
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if (max_value_ != nullptr) {
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max_value_->~T();
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allocator_.deallocate(max_value_, 1);
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}
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}
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template<typename T, typename C, typename A>
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template<typename FwdT>
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void quantiles_sketch<T, C, A>::update(FwdT&& item) {
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if (!check_update_value(item)) { return; }
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if (is_empty()) {
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min_value_ = new (allocator_.allocate(1)) T(item);
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max_value_ = new (allocator_.allocate(1)) T(item);
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} else {
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if (C()(item, *min_value_)) *min_value_ = item;
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if (C()(*max_value_, item)) *max_value_ = item;
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}
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// if exceed capacity, grow until size 2k -- assumes eager processing
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if (base_buffer_.size() + 1 > base_buffer_.capacity())
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grow_base_buffer();
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base_buffer_.push_back(std::forward<FwdT>(item));
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++n_;
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if (base_buffer_.size() > 1)
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is_sorted_ = false;
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if (base_buffer_.size() == 2 * k_)
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process_full_base_buffer();
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}
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template<typename T, typename C, typename A>
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template<typename FwdSk>
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void quantiles_sketch<T, C, A>::merge(FwdSk&& other) {
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if (other.is_empty()) {
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return; // nothing to do
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} else if (!other.is_estimation_mode()) {
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// other is exact, stream in regardless of k
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for (auto item : other.base_buffer_) {
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update(conditional_forward<FwdSk>(item));
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}
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return; // we're done
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}
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// we know other has data and is in estimation mode
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if (is_estimation_mode()) {
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if (k_ == other.get_k()) {
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standard_merge(*this, other);
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} else if (k_ > other.get_k()) {
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quantiles_sketch sk_copy(other);
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downsampling_merge(sk_copy, *this);
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*this = sk_copy;
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} else { // k_ < other.get_k()
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downsampling_merge(*this, other);
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}
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} else {
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// exact or empty
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quantiles_sketch sk_copy(other);
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if (k_ <= other.get_k()) {
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if (!is_empty()) {
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for (uint16_t i = 0; i < base_buffer_.size(); ++i) {
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sk_copy.update(std::move(base_buffer_[i]));
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}
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}
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} else { // k_ > other.get_k()
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downsampling_merge(sk_copy, *this);
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}
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*this = sk_copy;
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}
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}
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218
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+
|
219
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+
template<typename T, typename C, typename A>
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220
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+
template<typename SerDe>
|
221
|
+
void quantiles_sketch<T, C, A>::serialize(std::ostream& os, const SerDe& serde) const {
|
222
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+
const uint8_t preamble_longs = is_empty() ? PREAMBLE_LONGS_SHORT : PREAMBLE_LONGS_FULL;
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223
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+
write(os, preamble_longs);
|
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+
const uint8_t ser_ver = SERIAL_VERSION;
|
225
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+
write(os, ser_ver);
|
226
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+
const uint8_t family = FAMILY;
|
227
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+
write(os, family);
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228
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+
|
229
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+
// side-effect: sort base buffer since always compact
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230
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+
// can't set is_sorted_ since const method
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231
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+
std::sort(const_cast<Level&>(base_buffer_).begin(), const_cast<Level&>(base_buffer_).end(), C());
|
232
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+
|
233
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+
// empty, ordered, compact are valid flags
|
234
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+
const uint8_t flags_byte(
|
235
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+
(is_empty() ? 1 << flags::IS_EMPTY : 0)
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236
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+
| (1 << flags::IS_SORTED) // always sorted as side effect noted above
|
237
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+
| (1 << flags::IS_COMPACT) // always compact -- could be optional for numeric types?
|
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+
);
|
239
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+
write(os, flags_byte);
|
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+
write(os, k_);
|
241
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+
uint16_t unused = 0;
|
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+
write(os, unused);
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243
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+
|
244
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+
if (!is_empty()) {
|
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+
write(os, n_);
|
246
|
+
|
247
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+
// min and max
|
248
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+
serde.serialize(os, min_value_, 1);
|
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+
serde.serialize(os, max_value_, 1);
|
250
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+
|
251
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+
// base buffer items
|
252
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+
serde.serialize(os, base_buffer_.data(), static_cast<unsigned>(base_buffer_.size()));
|
253
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+
|
254
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+
// levels, only when data is present
|
255
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+
for (Level lvl : levels_) {
|
256
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+
if (lvl.size() > 0)
|
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+
serde.serialize(os, lvl.data(), static_cast<unsigned>(lvl.size()));
|
258
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+
}
|
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+
}
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+
}
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+
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262
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+
template<typename T, typename C, typename A>
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+
template<typename SerDe>
|
264
|
+
auto quantiles_sketch<T, C, A>::serialize(unsigned header_size_bytes, const SerDe& serde) const -> vector_bytes {
|
265
|
+
const size_t size = get_serialized_size_bytes(serde) + header_size_bytes;
|
266
|
+
vector_bytes bytes(size, 0, allocator_);
|
267
|
+
uint8_t* ptr = bytes.data() + header_size_bytes;
|
268
|
+
const uint8_t* end_ptr = ptr + size;
|
269
|
+
|
270
|
+
const uint8_t preamble_longs = is_empty() ? PREAMBLE_LONGS_SHORT : PREAMBLE_LONGS_FULL;
|
271
|
+
ptr += copy_to_mem(preamble_longs, ptr);
|
272
|
+
const uint8_t ser_ver = SERIAL_VERSION;
|
273
|
+
ptr += copy_to_mem(ser_ver, ptr);
|
274
|
+
const uint8_t family = FAMILY;
|
275
|
+
ptr += copy_to_mem(family, ptr);
|
276
|
+
|
277
|
+
// side-effect: sort base buffer since always compact
|
278
|
+
// can't set is_sorted_ since const method
|
279
|
+
std::sort(const_cast<Level&>(base_buffer_).begin(), const_cast<Level&>(base_buffer_).end(), C());
|
280
|
+
|
281
|
+
// empty, ordered, compact are valid flags
|
282
|
+
const uint8_t flags_byte(
|
283
|
+
(is_empty() ? 1 << flags::IS_EMPTY : 0)
|
284
|
+
| (1 << flags::IS_SORTED) // always sorted as side effect noted above
|
285
|
+
| (1 << flags::IS_COMPACT) // always compact
|
286
|
+
);
|
287
|
+
ptr += copy_to_mem(flags_byte, ptr);
|
288
|
+
ptr += copy_to_mem(k_, ptr);
|
289
|
+
ptr += sizeof(uint16_t); // 2 unused bytes
|
290
|
+
|
291
|
+
if (!is_empty()) {
|
292
|
+
|
293
|
+
ptr += copy_to_mem(n_, ptr);
|
294
|
+
|
295
|
+
// min and max
|
296
|
+
ptr += serde.serialize(ptr, end_ptr - ptr, min_value_, 1);
|
297
|
+
ptr += serde.serialize(ptr, end_ptr - ptr, max_value_, 1);
|
298
|
+
|
299
|
+
// base buffer items
|
300
|
+
if (base_buffer_.size() > 0)
|
301
|
+
ptr += serde.serialize(ptr, end_ptr - ptr, base_buffer_.data(), static_cast<unsigned>(base_buffer_.size()));
|
302
|
+
|
303
|
+
// levels, only when data is present
|
304
|
+
for (Level lvl : levels_) {
|
305
|
+
if (lvl.size() > 0)
|
306
|
+
ptr += serde.serialize(ptr, end_ptr - ptr, lvl.data(), static_cast<unsigned>(lvl.size()));
|
307
|
+
}
|
308
|
+
}
|
309
|
+
|
310
|
+
return bytes;
|
311
|
+
}
|
312
|
+
|
313
|
+
template<typename T, typename C, typename A>
|
314
|
+
template<typename SerDe>
|
315
|
+
auto quantiles_sketch<T, C, A>::deserialize(std::istream &is, const SerDe& serde, const A &allocator) -> quantiles_sketch {
|
316
|
+
const auto preamble_longs = read<uint8_t>(is);
|
317
|
+
const auto serial_version = read<uint8_t>(is);
|
318
|
+
const auto family_id = read<uint8_t>(is);
|
319
|
+
const auto flags_byte = read<uint8_t>(is);
|
320
|
+
const auto k = read<uint16_t>(is);
|
321
|
+
read<uint16_t>(is); // unused
|
322
|
+
|
323
|
+
check_k(k);
|
324
|
+
check_serial_version(serial_version); // a little redundant with the header check
|
325
|
+
check_family_id(family_id);
|
326
|
+
check_header_validity(preamble_longs, flags_byte, serial_version);
|
327
|
+
|
328
|
+
if (!is.good()) throw std::runtime_error("error reading from std::istream");
|
329
|
+
const bool is_empty = (flags_byte & (1 << flags::IS_EMPTY)) > 0;
|
330
|
+
if (is_empty) {
|
331
|
+
return quantiles_sketch(k, allocator);
|
332
|
+
}
|
333
|
+
|
334
|
+
const auto items_seen = read<uint64_t>(is);
|
335
|
+
|
336
|
+
const bool is_compact = (serial_version == 2) | ((flags_byte & (1 << flags::IS_COMPACT)) > 0);
|
337
|
+
const bool is_sorted = (flags_byte & (1 << flags::IS_SORTED)) > 0;
|
338
|
+
|
339
|
+
A alloc(allocator);
|
340
|
+
auto item_buffer_deleter = [&alloc](T* ptr) { alloc.deallocate(ptr, 1); };
|
341
|
+
std::unique_ptr<T, decltype(item_buffer_deleter)> min_value_buffer(alloc.allocate(1), item_buffer_deleter);
|
342
|
+
std::unique_ptr<T, decltype(item_buffer_deleter)> max_value_buffer(alloc.allocate(1), item_buffer_deleter);
|
343
|
+
std::unique_ptr<T, item_deleter> min_value(nullptr, item_deleter(allocator));
|
344
|
+
std::unique_ptr<T, item_deleter> max_value(nullptr, item_deleter(allocator));
|
345
|
+
|
346
|
+
serde.deserialize(is, min_value_buffer.get(), 1);
|
347
|
+
// serde call did not throw, repackage with destrtuctor
|
348
|
+
min_value = std::unique_ptr<T, item_deleter>(min_value_buffer.release(), item_deleter(allocator));
|
349
|
+
serde.deserialize(is, max_value_buffer.get(), 1);
|
350
|
+
// serde call did not throw, repackage with destrtuctor
|
351
|
+
max_value = std::unique_ptr<T, item_deleter>(max_value_buffer.release(), item_deleter(allocator));
|
352
|
+
|
353
|
+
if (serial_version == 1) {
|
354
|
+
read<uint64_t>(is); // no longer used
|
355
|
+
}
|
356
|
+
|
357
|
+
// allocate buffers as needed
|
358
|
+
const uint8_t levels_needed = compute_levels_needed(k, items_seen);
|
359
|
+
const uint64_t bit_pattern = compute_bit_pattern(k, items_seen);
|
360
|
+
|
361
|
+
// Java provides a compact storage layout for a sketch of primitive doubles. The C++ version
|
362
|
+
// does not currently operate sketches in compact mode, but will only serialize as compact
|
363
|
+
// to avoid complications around serialization of empty values for generic type T. We also need
|
364
|
+
// to be able to ingest either serialized format from Java.
|
365
|
+
|
366
|
+
// load base buffer
|
367
|
+
const uint32_t bb_items = compute_base_buffer_items(k, items_seen);
|
368
|
+
uint32_t items_to_read = (levels_needed == 0 || is_compact) ? bb_items : 2 * k;
|
369
|
+
Level base_buffer = deserialize_array(is, bb_items, 2 * k, serde, allocator);
|
370
|
+
if (items_to_read > bb_items) { // either equal or greater, never read fewer items
|
371
|
+
// read remaining items, but don't store them
|
372
|
+
deserialize_array(is, items_to_read - bb_items, items_to_read - bb_items, serde, allocator);
|
373
|
+
}
|
374
|
+
|
375
|
+
// populate vector of Levels directly
|
376
|
+
VectorLevels levels(allocator);
|
377
|
+
levels.reserve(levels_needed);
|
378
|
+
if (levels_needed > 0) {
|
379
|
+
uint64_t working_pattern = bit_pattern;
|
380
|
+
for (size_t i = 0; i < levels_needed; ++i, working_pattern >>= 1) {
|
381
|
+
if ((working_pattern & 0x01) == 1) {
|
382
|
+
Level level = deserialize_array(is, k, k, serde, allocator);
|
383
|
+
levels.push_back(std::move(level));
|
384
|
+
} else {
|
385
|
+
Level level(allocator);
|
386
|
+
level.reserve(k);
|
387
|
+
levels.push_back(std::move(level));
|
388
|
+
}
|
389
|
+
}
|
390
|
+
}
|
391
|
+
|
392
|
+
return quantiles_sketch(k, items_seen, bit_pattern,
|
393
|
+
std::move(base_buffer), std::move(levels), std::move(min_value), std::move(max_value), is_sorted, allocator);
|
394
|
+
}
|
395
|
+
|
396
|
+
template<typename T, typename C, typename A>
|
397
|
+
template<typename SerDe>
|
398
|
+
auto quantiles_sketch<T, C, A>::deserialize_array(std::istream& is, uint32_t num_items, uint32_t capacity, const SerDe& serde, const A& allocator) -> Level {
|
399
|
+
A alloc(allocator);
|
400
|
+
std::unique_ptr<T, items_deleter> items(alloc.allocate(num_items), items_deleter(allocator, false, num_items));
|
401
|
+
serde.deserialize(is, items.get(), num_items);
|
402
|
+
// serde did not throw, enable destructors
|
403
|
+
items.get_deleter().set_destroy(true);
|
404
|
+
if (!is.good()) throw std::runtime_error("error reading from std::istream");
|
405
|
+
|
406
|
+
// succesfully read, now put into a Level
|
407
|
+
Level level(allocator);
|
408
|
+
level.reserve(capacity);
|
409
|
+
level.insert(level.begin(),
|
410
|
+
std::make_move_iterator(items.get()),
|
411
|
+
std::make_move_iterator(items.get() + num_items));
|
412
|
+
return level;
|
413
|
+
}
|
414
|
+
|
415
|
+
template<typename T, typename C, typename A>
|
416
|
+
template<typename SerDe>
|
417
|
+
auto quantiles_sketch<T, C, A>::deserialize(const void* bytes, size_t size, const SerDe& serde, const A &allocator) -> quantiles_sketch {
|
418
|
+
ensure_minimum_memory(size, 8);
|
419
|
+
const char* ptr = static_cast<const char*>(bytes);
|
420
|
+
const char* end_ptr = static_cast<const char*>(bytes) + size;
|
421
|
+
|
422
|
+
uint8_t preamble_longs;
|
423
|
+
ptr += copy_from_mem(ptr, preamble_longs);
|
424
|
+
uint8_t serial_version;
|
425
|
+
ptr += copy_from_mem(ptr, serial_version);
|
426
|
+
uint8_t family_id;
|
427
|
+
ptr += copy_from_mem(ptr, family_id);
|
428
|
+
uint8_t flags_byte;
|
429
|
+
ptr += copy_from_mem(ptr, flags_byte);
|
430
|
+
uint16_t k;
|
431
|
+
ptr += copy_from_mem(ptr, k);
|
432
|
+
uint16_t unused;
|
433
|
+
ptr += copy_from_mem(ptr, unused);
|
434
|
+
|
435
|
+
check_k(k);
|
436
|
+
check_serial_version(serial_version); // a little redundant with the header check
|
437
|
+
check_family_id(family_id);
|
438
|
+
check_header_validity(preamble_longs, flags_byte, serial_version);
|
439
|
+
|
440
|
+
const bool is_empty = (flags_byte & (1 << flags::IS_EMPTY)) > 0;
|
441
|
+
if (is_empty) {
|
442
|
+
return quantiles_sketch(k, allocator);
|
443
|
+
}
|
444
|
+
|
445
|
+
ensure_minimum_memory(size, 16);
|
446
|
+
uint64_t items_seen;
|
447
|
+
ptr += copy_from_mem(ptr, items_seen);
|
448
|
+
|
449
|
+
const bool is_compact = (serial_version == 2) | ((flags_byte & (1 << flags::IS_COMPACT)) > 0);
|
450
|
+
const bool is_sorted = (flags_byte & (1 << flags::IS_SORTED)) > 0;
|
451
|
+
|
452
|
+
A alloc(allocator);
|
453
|
+
auto item_buffer_deleter = [&alloc](T* ptr) { alloc.deallocate(ptr, 1); };
|
454
|
+
std::unique_ptr<T, decltype(item_buffer_deleter)> min_value_buffer(alloc.allocate(1), item_buffer_deleter);
|
455
|
+
std::unique_ptr<T, decltype(item_buffer_deleter)> max_value_buffer(alloc.allocate(1), item_buffer_deleter);
|
456
|
+
std::unique_ptr<T, item_deleter> min_value(nullptr, item_deleter(allocator));
|
457
|
+
std::unique_ptr<T, item_deleter> max_value(nullptr, item_deleter(allocator));
|
458
|
+
|
459
|
+
ptr += serde.deserialize(ptr, end_ptr - ptr, min_value_buffer.get(), 1);
|
460
|
+
// serde call did not throw, repackage with destrtuctor
|
461
|
+
min_value = std::unique_ptr<T, item_deleter>(min_value_buffer.release(), item_deleter(allocator));
|
462
|
+
ptr += serde.deserialize(ptr, end_ptr - ptr, max_value_buffer.get(), 1);
|
463
|
+
// serde call did not throw, repackage with destrtuctor
|
464
|
+
max_value = std::unique_ptr<T, item_deleter>(max_value_buffer.release(), item_deleter(allocator));
|
465
|
+
|
466
|
+
if (serial_version == 1) {
|
467
|
+
uint64_t unused_long;
|
468
|
+
ptr += copy_from_mem(ptr, unused_long); // no longer used
|
469
|
+
}
|
470
|
+
|
471
|
+
// allocate buffers as needed
|
472
|
+
const uint8_t levels_needed = compute_levels_needed(k, items_seen);
|
473
|
+
const uint64_t bit_pattern = compute_bit_pattern(k, items_seen);
|
474
|
+
|
475
|
+
// Java provides a compact storage layout for a sketch of primitive doubles. The C++ version
|
476
|
+
// does not currently operate sketches in compact mode, but will only serialize as compact
|
477
|
+
// to avoid complications around serialization of empty values for generic type T. We also need
|
478
|
+
// to be able to ingest either serialized format from Java.
|
479
|
+
|
480
|
+
// load base buffer
|
481
|
+
const uint32_t bb_items = compute_base_buffer_items(k, items_seen);
|
482
|
+
uint32_t items_to_read = (levels_needed == 0 || is_compact) ? bb_items : 2 * k;
|
483
|
+
auto base_buffer_pair = deserialize_array(ptr, end_ptr - ptr, bb_items, 2 * k, serde, allocator);
|
484
|
+
ptr += base_buffer_pair.second;
|
485
|
+
if (items_to_read > bb_items) { // either equal or greater, never read fewer items
|
486
|
+
// read remaining items, only use to advance the pointer
|
487
|
+
auto extras = deserialize_array(ptr, end_ptr - ptr, items_to_read - bb_items, items_to_read - bb_items, serde, allocator);
|
488
|
+
ptr += extras.second;
|
489
|
+
}
|
490
|
+
|
491
|
+
// populate vector of Levels directly
|
492
|
+
VectorLevels levels(allocator);
|
493
|
+
levels.reserve(levels_needed);
|
494
|
+
if (levels_needed > 0) {
|
495
|
+
uint64_t working_pattern = bit_pattern;
|
496
|
+
for (size_t i = 0; i < levels_needed; ++i, working_pattern >>= 1) {
|
497
|
+
|
498
|
+
if ((working_pattern & 0x01) == 1) {
|
499
|
+
auto pair = deserialize_array(ptr, end_ptr - ptr, k, k, serde, allocator);
|
500
|
+
ptr += pair.second;
|
501
|
+
levels.push_back(std::move(pair.first));
|
502
|
+
} else {
|
503
|
+
Level level(allocator);
|
504
|
+
level.reserve(k);
|
505
|
+
levels.push_back(std::move(level));
|
506
|
+
}
|
507
|
+
}
|
508
|
+
}
|
509
|
+
|
510
|
+
return quantiles_sketch(k, items_seen, bit_pattern,
|
511
|
+
std::move(base_buffer_pair.first), std::move(levels), std::move(min_value), std::move(max_value), is_sorted, allocator);
|
512
|
+
}
|
513
|
+
|
514
|
+
template<typename T, typename C, typename A>
|
515
|
+
template<typename SerDe>
|
516
|
+
auto quantiles_sketch<T, C, A>::deserialize_array(const void* bytes, size_t size, uint32_t num_items, uint32_t capacity, const SerDe& serde, const A& allocator)
|
517
|
+
-> std::pair<Level, size_t> {
|
518
|
+
const char* ptr = static_cast<const char*>(bytes);
|
519
|
+
const char* end_ptr = static_cast<const char*>(bytes) + size;
|
520
|
+
A alloc(allocator);
|
521
|
+
std::unique_ptr<T, items_deleter> items(alloc.allocate(num_items), items_deleter(allocator, false, num_items));
|
522
|
+
ptr += serde.deserialize(ptr, end_ptr - ptr, items.get(), num_items);
|
523
|
+
// serde did not throw, enable destructors
|
524
|
+
items.get_deleter().set_destroy(true);
|
525
|
+
|
526
|
+
// succesfully read, now put into a Level
|
527
|
+
Level level(allocator);
|
528
|
+
level.reserve(capacity);
|
529
|
+
level.insert(level.begin(),
|
530
|
+
std::make_move_iterator(items.get()),
|
531
|
+
std::make_move_iterator(items.get() + num_items));
|
532
|
+
|
533
|
+
return std::pair<Level, size_t>(std::move(level), ptr - static_cast<const char*>(bytes));
|
534
|
+
}
|
535
|
+
|
536
|
+
template<typename T, typename C, typename A>
|
537
|
+
string<A> quantiles_sketch<T, C, A>::to_string(bool print_levels, bool print_items) const {
|
538
|
+
// Using a temporary stream for implementation here does not comply with AllocatorAwareContainer requirements.
|
539
|
+
// The stream does not support passing an allocator instance, and alternatives are complicated.
|
540
|
+
std::ostringstream os;
|
541
|
+
os << "### Quantiles Sketch summary:" << std::endl;
|
542
|
+
os << " K : " << k_ << std::endl;
|
543
|
+
os << " N : " << n_ << std::endl;
|
544
|
+
os << " Epsilon : " << std::setprecision(3) << get_normalized_rank_error(false) * 100 << "%" << std::endl;
|
545
|
+
os << " Epsilon PMF : " << get_normalized_rank_error(true) * 100 << "%" << std::endl;
|
546
|
+
os << " Empty : " << (is_empty() ? "true" : "false") << std::endl;
|
547
|
+
os << " Estimation mode: " << (is_estimation_mode() ? "true" : "false") << std::endl;
|
548
|
+
os << " Levels (w/o BB): " << levels_.size() << std::endl;
|
549
|
+
os << " Used Levels : " << compute_valid_levels(bit_pattern_) << std::endl;
|
550
|
+
os << " Retained items : " << get_num_retained() << std::endl;
|
551
|
+
if (!is_empty()) {
|
552
|
+
os << " Min value : " << *min_value_ << std::endl;
|
553
|
+
os << " Max value : " << *max_value_ << std::endl;
|
554
|
+
}
|
555
|
+
os << "### End sketch summary" << std::endl;
|
556
|
+
|
557
|
+
if (print_levels) {
|
558
|
+
os << "### Quantiles Sketch levels:" << std::endl;
|
559
|
+
os << " index: items in use" << std::endl;
|
560
|
+
os << " BB: " << base_buffer_.size() << std::endl;
|
561
|
+
for (uint8_t i = 0; i < levels_.size(); i++) {
|
562
|
+
os << " " << static_cast<unsigned int>(i) << ": " << levels_[i].size() << std::endl;
|
563
|
+
}
|
564
|
+
os << "### End sketch levels" << std::endl;
|
565
|
+
}
|
566
|
+
|
567
|
+
if (print_items) {
|
568
|
+
os << "### Quantiles Sketch data:" << std::endl;
|
569
|
+
uint8_t level = 0;
|
570
|
+
os << " BB:" << std::endl;
|
571
|
+
for (const T& item : base_buffer_) {
|
572
|
+
os << " " << std::to_string(item) << std::endl;
|
573
|
+
}
|
574
|
+
for (uint8_t i = 0; i < levels_.size(); ++i) {
|
575
|
+
os << " level " << static_cast<unsigned int>(level) << ":" << std::endl;
|
576
|
+
for (const T& item : levels_[i]) {
|
577
|
+
os << " " << std::to_string(item) << std::endl;
|
578
|
+
}
|
579
|
+
}
|
580
|
+
os << "### End sketch data" << std::endl;
|
581
|
+
}
|
582
|
+
return string<A>(os.str().c_str(), allocator_);
|
583
|
+
}
|
584
|
+
|
585
|
+
template<typename T, typename C, typename A>
|
586
|
+
uint16_t quantiles_sketch<T, C, A>::get_k() const {
|
587
|
+
return k_;
|
588
|
+
}
|
589
|
+
|
590
|
+
template<typename T, typename C, typename A>
|
591
|
+
uint64_t quantiles_sketch<T, C, A>::get_n() const {
|
592
|
+
return n_;
|
593
|
+
}
|
594
|
+
|
595
|
+
template<typename T, typename C, typename A>
|
596
|
+
bool quantiles_sketch<T, C, A>::is_empty() const {
|
597
|
+
return n_ == 0;
|
598
|
+
}
|
599
|
+
|
600
|
+
template<typename T, typename C, typename A>
|
601
|
+
bool quantiles_sketch<T, C, A>::is_estimation_mode() const {
|
602
|
+
return bit_pattern_ != 0;
|
603
|
+
}
|
604
|
+
|
605
|
+
template<typename T, typename C, typename A>
|
606
|
+
uint32_t quantiles_sketch<T, C, A>::get_num_retained() const {
|
607
|
+
return compute_retained_items(k_, n_);
|
608
|
+
}
|
609
|
+
|
610
|
+
template<typename T, typename C, typename A>
|
611
|
+
const T& quantiles_sketch<T, C, A>::get_min_value() const {
|
612
|
+
if (is_empty()) return get_invalid_value();
|
613
|
+
return *min_value_;
|
614
|
+
}
|
615
|
+
|
616
|
+
template<typename T, typename C, typename A>
|
617
|
+
const T& quantiles_sketch<T, C, A>::get_max_value() const {
|
618
|
+
if (is_empty()) return get_invalid_value();
|
619
|
+
return *max_value_;
|
620
|
+
}
|
621
|
+
|
622
|
+
template<typename T, typename C, typename A>
|
623
|
+
C quantiles_sketch<T, C, A>::get_comparator() const {
|
624
|
+
return C();
|
625
|
+
}
|
626
|
+
|
627
|
+
// implementation for fixed-size arithmetic types (integral and floating point)
|
628
|
+
template<typename T, typename C, typename A>
|
629
|
+
template<typename SerDe, typename TT, typename std::enable_if<std::is_arithmetic<TT>::value, int>::type>
|
630
|
+
size_t quantiles_sketch<T, C, A>::get_serialized_size_bytes(const SerDe&) const {
|
631
|
+
if (is_empty()) { return EMPTY_SIZE_BYTES; }
|
632
|
+
return DATA_START + ((get_num_retained() + 2) * sizeof(TT));
|
633
|
+
}
|
634
|
+
|
635
|
+
// implementation for all other types
|
636
|
+
template<typename T, typename C, typename A>
|
637
|
+
template<typename SerDe, typename TT, typename std::enable_if<!std::is_arithmetic<TT>::value, int>::type>
|
638
|
+
size_t quantiles_sketch<T, C, A>::get_serialized_size_bytes(const SerDe& serde) const {
|
639
|
+
if (is_empty()) { return EMPTY_SIZE_BYTES; }
|
640
|
+
size_t size = DATA_START;
|
641
|
+
size += serde.size_of_item(*min_value_);
|
642
|
+
size += serde.size_of_item(*max_value_);
|
643
|
+
for (auto it: *this) size += serde.size_of_item(it.first);
|
644
|
+
return size;
|
645
|
+
}
|
646
|
+
|
647
|
+
template<typename T, typename C, typename A>
|
648
|
+
double quantiles_sketch<T, C, A>::get_normalized_rank_error(bool is_pmf) const {
|
649
|
+
return get_normalized_rank_error(k_, is_pmf);
|
650
|
+
}
|
651
|
+
|
652
|
+
template<typename T, typename C, typename A>
|
653
|
+
double quantiles_sketch<T, C, A>::get_normalized_rank_error(uint16_t k, bool is_pmf) {
|
654
|
+
return is_pmf
|
655
|
+
? 1.854 / std::pow(k, 0.9657)
|
656
|
+
: 1.576 / std::pow(k, 0.9726);
|
657
|
+
}
|
658
|
+
|
659
|
+
template<typename T, typename C, typename A>
|
660
|
+
template<bool inclusive>
|
661
|
+
quantile_sketch_sorted_view<T, C, A> quantiles_sketch<T, C, A>::get_sorted_view(bool cumulative) const {
|
662
|
+
// allow side-effect of sorting the base buffer; can't set the flag since
|
663
|
+
// this is a const method
|
664
|
+
if (!is_sorted_) {
|
665
|
+
std::sort(const_cast<Level&>(base_buffer_).begin(), const_cast<Level&>(base_buffer_).end(), C());
|
666
|
+
}
|
667
|
+
quantile_sketch_sorted_view<T, C, A> view(get_num_retained(), allocator_);
|
668
|
+
|
669
|
+
uint64_t weight = 1;
|
670
|
+
view.add(base_buffer_.begin(), base_buffer_.end(), weight);
|
671
|
+
for (auto& level : levels_) {
|
672
|
+
weight <<= 1;
|
673
|
+
if (level.empty()) { continue; }
|
674
|
+
view.add(level.begin(), level.end(), weight);
|
675
|
+
}
|
676
|
+
|
677
|
+
if (cumulative) view.template convert_to_cummulative<inclusive>();
|
678
|
+
return view;
|
679
|
+
}
|
680
|
+
|
681
|
+
template<typename T, typename C, typename A>
|
682
|
+
template<bool inclusive>
|
683
|
+
auto quantiles_sketch<T, C, A>::get_quantile(double rank) const -> quantile_return_type {
|
684
|
+
if (is_empty()) return get_invalid_value();
|
685
|
+
if (rank == 0.0) return *min_value_;
|
686
|
+
if (rank == 1.0) return *max_value_;
|
687
|
+
if ((rank < 0.0) || (rank > 1.0)) {
|
688
|
+
throw std::invalid_argument("Rank cannot be less than zero or greater than 1.0");
|
689
|
+
}
|
690
|
+
// possible side-effect: sorting base buffer
|
691
|
+
return get_sorted_view<inclusive>(true).get_quantile(rank);
|
692
|
+
}
|
693
|
+
|
694
|
+
template<typename T, typename C, typename A>
|
695
|
+
template<bool inclusive>
|
696
|
+
std::vector<T, A> quantiles_sketch<T, C, A>::get_quantiles(const double* ranks, uint32_t size) const {
|
697
|
+
std::vector<T, A> quantiles(allocator_);
|
698
|
+
if (is_empty()) return quantiles;
|
699
|
+
quantiles.reserve(size);
|
700
|
+
|
701
|
+
// possible side-effect: sorting base buffer
|
702
|
+
auto view = get_sorted_view<inclusive>(true);
|
703
|
+
|
704
|
+
for (uint32_t i = 0; i < size; ++i) {
|
705
|
+
const double rank = ranks[i];
|
706
|
+
if ((rank < 0.0) || (rank > 1.0)) {
|
707
|
+
throw std::invalid_argument("rank cannot be less than zero or greater than 1.0");
|
708
|
+
}
|
709
|
+
if (rank == 0.0) quantiles.push_back(*min_value_);
|
710
|
+
else if (rank == 1.0) quantiles.push_back(*max_value_);
|
711
|
+
else {
|
712
|
+
quantiles.push_back(view.get_quantile(rank));
|
713
|
+
}
|
714
|
+
}
|
715
|
+
return quantiles;
|
716
|
+
}
|
717
|
+
|
718
|
+
template<typename T, typename C, typename A>
|
719
|
+
template<bool inclusive>
|
720
|
+
std::vector<T, A> quantiles_sketch<T, C, A>::get_quantiles(uint32_t num) const {
|
721
|
+
if (is_empty()) return std::vector<T, A>(allocator_);
|
722
|
+
if (num == 0) {
|
723
|
+
throw std::invalid_argument("num must be > 0");
|
724
|
+
}
|
725
|
+
vector_double fractions(num, 0, allocator_);
|
726
|
+
fractions[0] = 0.0;
|
727
|
+
for (size_t i = 1; i < num; i++) {
|
728
|
+
fractions[i] = static_cast<double>(i) / (num - 1);
|
729
|
+
}
|
730
|
+
if (num > 1) {
|
731
|
+
fractions[num - 1] = 1.0;
|
732
|
+
}
|
733
|
+
return get_quantiles<inclusive>(fractions.data(), num);
|
734
|
+
}
|
735
|
+
|
736
|
+
template<typename T, typename C, typename A>
|
737
|
+
template<bool inclusive>
|
738
|
+
double quantiles_sketch<T, C, A>::get_rank(const T& value) const {
|
739
|
+
if (is_empty()) return std::numeric_limits<double>::quiet_NaN();
|
740
|
+
uint64_t weight = 1;
|
741
|
+
uint64_t total = 0;
|
742
|
+
for (const T &item: base_buffer_) {
|
743
|
+
if (inclusive ? !C()(value, item) : C()(item, value))
|
744
|
+
total += weight;
|
745
|
+
}
|
746
|
+
|
747
|
+
weight *= 2;
|
748
|
+
for (uint8_t level = 0; level < levels_.size(); ++level, weight *= 2) {
|
749
|
+
if (levels_[level].empty()) { continue; }
|
750
|
+
const T* data = levels_[level].data();
|
751
|
+
for (uint16_t i = 0; i < k_; ++i) {
|
752
|
+
if (inclusive ? !C()(value, data[i]) : C()(data[i], value))
|
753
|
+
total += weight;
|
754
|
+
else
|
755
|
+
break; // levels are sorted, no point comparing further
|
756
|
+
}
|
757
|
+
}
|
758
|
+
return (double) total / n_;
|
759
|
+
}
|
760
|
+
|
761
|
+
template<typename T, typename C, typename A>
|
762
|
+
template<bool inclusive>
|
763
|
+
auto quantiles_sketch<T, C, A>::get_PMF(const T* split_points, uint32_t size) const -> vector_double {
|
764
|
+
auto buckets = get_CDF<inclusive>(split_points, size);
|
765
|
+
if (is_empty()) return buckets;
|
766
|
+
for (uint32_t i = size; i > 0; --i) {
|
767
|
+
buckets[i] -= buckets[i - 1];
|
768
|
+
}
|
769
|
+
return buckets;
|
770
|
+
}
|
771
|
+
|
772
|
+
template<typename T, typename C, typename A>
|
773
|
+
template<bool inclusive>
|
774
|
+
auto quantiles_sketch<T, C, A>::get_CDF(const T* split_points, uint32_t size) const -> vector_double {
|
775
|
+
vector_double buckets(allocator_);
|
776
|
+
if (is_empty()) return buckets;
|
777
|
+
check_split_points(split_points, size);
|
778
|
+
buckets.reserve(size + 1);
|
779
|
+
for (uint32_t i = 0; i < size; ++i) buckets.push_back(get_rank<inclusive>(split_points[i]));
|
780
|
+
buckets.push_back(1);
|
781
|
+
return buckets;
|
782
|
+
}
|
783
|
+
|
784
|
+
template<typename T, typename C, typename A>
|
785
|
+
uint32_t quantiles_sketch<T, C, A>::compute_retained_items(const uint16_t k, const uint64_t n) {
|
786
|
+
uint32_t bb_count = compute_base_buffer_items(k, n);
|
787
|
+
uint64_t bit_pattern = compute_bit_pattern(k, n);
|
788
|
+
uint32_t valid_levels = compute_valid_levels(bit_pattern);
|
789
|
+
return bb_count + (k * valid_levels);
|
790
|
+
}
|
791
|
+
|
792
|
+
template<typename T, typename C, typename A>
|
793
|
+
uint32_t quantiles_sketch<T, C, A>::compute_base_buffer_items(const uint16_t k, const uint64_t n) {
|
794
|
+
return n % (static_cast<uint64_t>(2) * k);
|
795
|
+
}
|
796
|
+
|
797
|
+
template<typename T, typename C, typename A>
|
798
|
+
uint64_t quantiles_sketch<T, C, A>::compute_bit_pattern(const uint16_t k, const uint64_t n) {
|
799
|
+
return n / (static_cast<uint64_t>(2) * k);
|
800
|
+
}
|
801
|
+
|
802
|
+
template<typename T, typename C, typename A>
|
803
|
+
uint32_t quantiles_sketch<T, C, A>::compute_valid_levels(const uint64_t bit_pattern) {
|
804
|
+
// TODO: Java's Long.bitCount() probably uses a better method
|
805
|
+
uint64_t bp = bit_pattern;
|
806
|
+
uint32_t count = 0;
|
807
|
+
while (bp > 0) {
|
808
|
+
if ((bp & 0x01) == 1) ++count;
|
809
|
+
bp >>= 1;
|
810
|
+
}
|
811
|
+
return count;
|
812
|
+
}
|
813
|
+
|
814
|
+
template<typename T, typename C, typename A>
|
815
|
+
uint8_t quantiles_sketch<T, C, A>::compute_levels_needed(const uint16_t k, const uint64_t n) {
|
816
|
+
return static_cast<uint8_t>(64U) - count_leading_zeros_in_u64(n / (2 * k));
|
817
|
+
}
|
818
|
+
|
819
|
+
template<typename T, typename C, typename A>
|
820
|
+
void quantiles_sketch<T, C, A>::check_k(uint16_t k) {
|
821
|
+
if (k < quantiles_constants::MIN_K || k > quantiles_constants::MAX_K || (k & (k - 1)) != 0) {
|
822
|
+
throw std::invalid_argument("k must be a power of 2 that is >= "
|
823
|
+
+ std::to_string(quantiles_constants::MIN_K) + " and <= "
|
824
|
+
+ std::to_string(quantiles_constants::MAX_K) + ". Found: " + std::to_string(k));
|
825
|
+
}
|
826
|
+
}
|
827
|
+
|
828
|
+
template<typename T, typename C, typename A>
|
829
|
+
void quantiles_sketch<T, C, A>::check_serial_version(uint8_t serial_version) {
|
830
|
+
if (serial_version == SERIAL_VERSION || serial_version == SERIAL_VERSION_1 || serial_version == SERIAL_VERSION_2)
|
831
|
+
return;
|
832
|
+
else
|
833
|
+
throw std::invalid_argument("Possible corruption. Unrecognized serialization version: " + std::to_string(serial_version));
|
834
|
+
}
|
835
|
+
|
836
|
+
template<typename T, typename C, typename A>
|
837
|
+
void quantiles_sketch<T, C, A>::check_family_id(uint8_t family_id) {
|
838
|
+
if (family_id == FAMILY)
|
839
|
+
return;
|
840
|
+
else
|
841
|
+
throw std::invalid_argument("Possible corruption. Family id does not indicate quantiles sketch: " + std::to_string(family_id));
|
842
|
+
}
|
843
|
+
|
844
|
+
template<typename T, typename C, typename A>
|
845
|
+
void quantiles_sketch<T, C, A>::check_header_validity(uint8_t preamble_longs, uint8_t flags_byte, uint8_t serial_version) {
|
846
|
+
bool empty = (flags_byte & (1 << flags::IS_EMPTY)) > 0;
|
847
|
+
bool compact = (flags_byte & (1 << flags::IS_COMPACT)) > 0;
|
848
|
+
|
849
|
+
uint8_t sw = (compact ? 1 : 0) + (2 * (empty ? 1 : 0))
|
850
|
+
+ (4 * (serial_version & 0xF)) + (32 * (preamble_longs & 0x3F));
|
851
|
+
bool valid = true;
|
852
|
+
|
853
|
+
switch (sw) { // exhaustive list and description of all valid cases
|
854
|
+
case 38 : break; //!compact, empty, serVer = 1, preLongs = 1; always stored as not compact
|
855
|
+
case 164 : break; //!compact, !empty, serVer = 1, preLongs = 5; always stored as not compact
|
856
|
+
case 42 : break; //!compact, empty, serVer = 2, preLongs = 1; always stored as compact
|
857
|
+
case 72 : break; //!compact, !empty, serVer = 2, preLongs = 2; always stored as compact
|
858
|
+
case 47 : break; // compact, empty, serVer = 3, preLongs = 1;
|
859
|
+
case 46 : break; //!compact, empty, serVer = 3, preLongs = 1;
|
860
|
+
case 79 : break; // compact, empty, serVer = 3, preLongs = 2;
|
861
|
+
case 78 : break; //!compact, empty, serVer = 3, preLongs = 2;
|
862
|
+
case 77 : break; // compact, !empty, serVer = 3, preLongs = 2;
|
863
|
+
case 76 : break; //!compact, !empty, serVer = 3, preLongs = 2;
|
864
|
+
default : //all other case values are invalid
|
865
|
+
valid = false;
|
866
|
+
}
|
867
|
+
|
868
|
+
if (!valid) {
|
869
|
+
std::ostringstream os;
|
870
|
+
os << "Possible sketch corruption. Inconsistent state: "
|
871
|
+
<< "preamble_longs = " << preamble_longs
|
872
|
+
<< ", empty = " << (empty ? "true" : "false")
|
873
|
+
<< ", serialization_version = " << serial_version
|
874
|
+
<< ", compact = " << (compact ? "true" : "false");
|
875
|
+
throw std::invalid_argument(os.str());
|
876
|
+
}
|
877
|
+
}
|
878
|
+
|
879
|
+
template <typename T, typename C, typename A>
|
880
|
+
typename quantiles_sketch<T, C, A>::const_iterator quantiles_sketch<T, C, A>::begin() const {
|
881
|
+
return quantiles_sketch<T, C, A>::const_iterator(base_buffer_, levels_, k_, n_, false);
|
882
|
+
}
|
883
|
+
|
884
|
+
template <typename T, typename C, typename A>
|
885
|
+
typename quantiles_sketch<T, C, A>::const_iterator quantiles_sketch<T, C, A>::end() const {
|
886
|
+
return quantiles_sketch<T, C, A>::const_iterator(base_buffer_, levels_, k_, n_, true);
|
887
|
+
}
|
888
|
+
|
889
|
+
template<typename T, typename C, typename A>
|
890
|
+
void quantiles_sketch<T, C, A>::grow_base_buffer() {
|
891
|
+
size_t new_size = std::max(std::min(static_cast<size_t>(2 * k_), 2 * base_buffer_.size()), static_cast<size_t>(1));
|
892
|
+
base_buffer_.reserve(new_size);
|
893
|
+
}
|
894
|
+
|
895
|
+
template<typename T, typename C, typename A>
|
896
|
+
void quantiles_sketch<T, C, A>::process_full_base_buffer() {
|
897
|
+
// make sure there will be enough levels for the propagation
|
898
|
+
grow_levels_if_needed(); // note: n_ was already incremented by update() before this
|
899
|
+
|
900
|
+
std::sort(base_buffer_.begin(), base_buffer_.end(), C());
|
901
|
+
in_place_propagate_carry(0,
|
902
|
+
levels_[0], // unused here, but 0 is guaranteed to exist
|
903
|
+
base_buffer_,
|
904
|
+
true, *this);
|
905
|
+
base_buffer_.clear();
|
906
|
+
is_sorted_ = true;
|
907
|
+
if (n_ / (2 * k_) != bit_pattern_) {
|
908
|
+
throw std::logic_error("Internal error: n / 2k (" + std::to_string(n_ / 2 * k_)
|
909
|
+
+ " != bit_pattern " + std::to_string(bit_pattern_));
|
910
|
+
}
|
911
|
+
}
|
912
|
+
|
913
|
+
template<typename T, typename C, typename A>
|
914
|
+
bool quantiles_sketch<T, C, A>::grow_levels_if_needed() {
|
915
|
+
uint8_t levels_needed = compute_levels_needed(k_, n_);
|
916
|
+
if (levels_needed == 0)
|
917
|
+
return false; // don't need levels and might have small base buffer. Possible during merges.
|
918
|
+
|
919
|
+
// from here on, assume full size base buffer (2k) and at least one additional level
|
920
|
+
if (levels_needed <= levels_.size())
|
921
|
+
return false;
|
922
|
+
|
923
|
+
Level empty_level(allocator_);
|
924
|
+
empty_level.reserve(k_);
|
925
|
+
levels_.push_back(std::move(empty_level));
|
926
|
+
return true;
|
927
|
+
}
|
928
|
+
|
929
|
+
template<typename T, typename C, typename A>
|
930
|
+
template<typename FwdV>
|
931
|
+
void quantiles_sketch<T, C, A>::in_place_propagate_carry(uint8_t starting_level,
|
932
|
+
FwdV&& buf_size_k, Level& buf_size_2k,
|
933
|
+
bool apply_as_update,
|
934
|
+
quantiles_sketch& sketch) {
|
935
|
+
const uint64_t bit_pattern = sketch.bit_pattern_;
|
936
|
+
const int k = sketch.k_;
|
937
|
+
|
938
|
+
uint8_t ending_level = lowest_zero_bit_starting_at(bit_pattern, starting_level);
|
939
|
+
|
940
|
+
if (apply_as_update) {
|
941
|
+
// update version of computation
|
942
|
+
// its is okay for buf_size_k to be null in this case
|
943
|
+
zip_buffer(buf_size_2k, sketch.levels_[ending_level]);
|
944
|
+
} else {
|
945
|
+
// merge_into version of computation
|
946
|
+
for (uint16_t i = 0; i < k; ++i) {
|
947
|
+
sketch.levels_[ending_level].push_back(conditional_forward<FwdV>(buf_size_k[i]));
|
948
|
+
}
|
949
|
+
}
|
950
|
+
|
951
|
+
for (uint64_t lvl = starting_level; lvl < ending_level; lvl++) {
|
952
|
+
if ((bit_pattern & (static_cast<uint64_t>(1) << lvl)) == 0) {
|
953
|
+
throw std::logic_error("unexpected empty level in bit_pattern");
|
954
|
+
}
|
955
|
+
merge_two_size_k_buffers(
|
956
|
+
sketch.levels_[lvl],
|
957
|
+
sketch.levels_[ending_level],
|
958
|
+
buf_size_2k);
|
959
|
+
sketch.levels_[lvl].clear();
|
960
|
+
sketch.levels_[ending_level].clear();
|
961
|
+
zip_buffer(buf_size_2k, sketch.levels_[ending_level]);
|
962
|
+
} // end of loop over lower levels
|
963
|
+
|
964
|
+
// update bit pattern with binary-arithmetic ripple carry
|
965
|
+
sketch.bit_pattern_ = bit_pattern + (static_cast<uint64_t>(1) << starting_level);
|
966
|
+
}
|
967
|
+
|
968
|
+
template<typename T, typename C, typename A>
|
969
|
+
void quantiles_sketch<T, C, A>::zip_buffer(Level& buf_in, Level& buf_out) {
|
970
|
+
#ifdef QUANTILES_VALIDATION
|
971
|
+
static uint32_t next_offset = 0;
|
972
|
+
uint32_t rand_offset = next_offset;
|
973
|
+
next_offset = 1 - next_offset;
|
974
|
+
#else
|
975
|
+
uint32_t rand_offset = random_bit();
|
976
|
+
#endif
|
977
|
+
if ((buf_in.size() != 2 * buf_out.capacity())
|
978
|
+
|| (buf_out.size() > 0)) {
|
979
|
+
throw std::logic_error("zip_buffer requires buf_in.size() == "
|
980
|
+
"2*buf_out.capacity() and empty buf_out");
|
981
|
+
}
|
982
|
+
|
983
|
+
size_t k = buf_out.capacity();
|
984
|
+
for (uint32_t i = rand_offset, o = 0; o < k; i += 2, ++o) {
|
985
|
+
buf_out.push_back(std::move(buf_in[i]));
|
986
|
+
}
|
987
|
+
buf_in.clear();
|
988
|
+
}
|
989
|
+
|
990
|
+
template<typename T, typename C, typename A>
|
991
|
+
template<typename FwdV>
|
992
|
+
void quantiles_sketch<T, C, A>::zip_buffer_with_stride(FwdV&& buf_in, Level& buf_out, uint16_t stride) {
|
993
|
+
// Random offset in range [0, stride)
|
994
|
+
std::uniform_int_distribution<uint16_t> dist(0, stride - 1);
|
995
|
+
uint16_t rand_offset = dist(random_utils::rand);
|
996
|
+
|
997
|
+
if ((buf_in.size() != stride * buf_out.capacity())
|
998
|
+
|| (buf_out.size() > 0)) {
|
999
|
+
throw std::logic_error("zip_buffer_with_stride requires buf_in.size() == "
|
1000
|
+
"stride*buf_out.capacity() and empty buf_out");
|
1001
|
+
}
|
1002
|
+
|
1003
|
+
size_t k = buf_out.capacity();
|
1004
|
+
for (uint16_t i = rand_offset, o = 0; o < k; i += stride, ++o) {
|
1005
|
+
buf_out.push_back(conditional_forward<FwdV>(buf_in[i]));
|
1006
|
+
}
|
1007
|
+
// do not clear input buffer
|
1008
|
+
}
|
1009
|
+
|
1010
|
+
|
1011
|
+
template<typename T, typename C, typename A>
|
1012
|
+
void quantiles_sketch<T, C, A>::merge_two_size_k_buffers(Level& src_1, Level& src_2, Level& dst) {
|
1013
|
+
if (src_1.size() != src_2.size()
|
1014
|
+
|| src_1.size() * 2 != dst.capacity()
|
1015
|
+
|| dst.size() != 0) {
|
1016
|
+
throw std::logic_error("Input invariants violated in merge_two_size_k_buffers()");
|
1017
|
+
}
|
1018
|
+
|
1019
|
+
auto end1 = src_1.end(), end2 = src_2.end();
|
1020
|
+
auto it1 = src_1.begin(), it2 = src_2.begin();
|
1021
|
+
|
1022
|
+
// TODO: probably actually doing copies given Level&?
|
1023
|
+
while (it1 != end1 && it2 != end2) {
|
1024
|
+
if (C()(*it1, *it2)) {
|
1025
|
+
dst.push_back(std::move(*it1++));
|
1026
|
+
} else {
|
1027
|
+
dst.push_back(std::move(*it2++));
|
1028
|
+
}
|
1029
|
+
}
|
1030
|
+
|
1031
|
+
if (it1 != end1) {
|
1032
|
+
dst.insert(dst.end(), it1, end1);
|
1033
|
+
} else {
|
1034
|
+
if (it2 == end2) { throw std::logic_error("it2 unexpectedly already at end of range"); }
|
1035
|
+
dst.insert(dst.end(), it2, end2);
|
1036
|
+
}
|
1037
|
+
}
|
1038
|
+
|
1039
|
+
|
1040
|
+
template<typename T, typename C, typename A>
|
1041
|
+
template<typename FwdSk>
|
1042
|
+
void quantiles_sketch<T, C, A>::standard_merge(quantiles_sketch& tgt, FwdSk&& src) {
|
1043
|
+
if (src.get_k() != tgt.get_k()) {
|
1044
|
+
throw std::invalid_argument("src.get_k() != tgt.get_k()");
|
1045
|
+
}
|
1046
|
+
if (src.is_empty()) {
|
1047
|
+
return;
|
1048
|
+
}
|
1049
|
+
|
1050
|
+
uint64_t new_n = src.get_n() + tgt.get_n();
|
1051
|
+
|
1052
|
+
// move items from src's base buffer
|
1053
|
+
for (uint16_t i = 0; i < src.base_buffer_.size(); ++i) {
|
1054
|
+
tgt.update(conditional_forward<FwdSk>(src.base_buffer_[i]));
|
1055
|
+
}
|
1056
|
+
|
1057
|
+
// check (after moving raw items) if we need to extend levels array
|
1058
|
+
uint8_t levels_needed = compute_levels_needed(tgt.get_k(), new_n);
|
1059
|
+
if (levels_needed > tgt.levels_.size()) {
|
1060
|
+
tgt.levels_.reserve(levels_needed);
|
1061
|
+
while (tgt.levels_.size() < levels_needed) {
|
1062
|
+
Level empty_level(tgt.allocator_);
|
1063
|
+
empty_level.reserve(tgt.get_k());
|
1064
|
+
tgt.levels_.push_back(std::move(empty_level));
|
1065
|
+
}
|
1066
|
+
}
|
1067
|
+
|
1068
|
+
Level scratch_buf(tgt.allocator_);
|
1069
|
+
scratch_buf.reserve(2 * tgt.get_k());
|
1070
|
+
|
1071
|
+
uint64_t src_pattern = src.bit_pattern_;
|
1072
|
+
for (uint8_t src_lvl = 0; src_pattern != 0; ++src_lvl, src_pattern >>= 1) {
|
1073
|
+
if ((src_pattern & 1) > 0) {
|
1074
|
+
scratch_buf.clear();
|
1075
|
+
|
1076
|
+
// propagate-carry
|
1077
|
+
in_place_propagate_carry(src_lvl,
|
1078
|
+
src.levels_[src_lvl], scratch_buf,
|
1079
|
+
false, tgt);
|
1080
|
+
// update n_ at the end
|
1081
|
+
}
|
1082
|
+
}
|
1083
|
+
tgt.n_ = new_n;
|
1084
|
+
if ((tgt.get_n() / (2 * tgt.get_k())) != tgt.bit_pattern_) {
|
1085
|
+
throw std::logic_error("Failed internal consistency check after standard_merge()");
|
1086
|
+
}
|
1087
|
+
|
1088
|
+
// update min and max values
|
1089
|
+
// can't just check is_empty() since min and max might not have been set if
|
1090
|
+
// there were no base buffer items added via update()
|
1091
|
+
if (tgt.min_value_ == nullptr) {
|
1092
|
+
tgt.min_value_ = new (tgt.allocator_.allocate(1)) T(*src.min_value_);
|
1093
|
+
} else {
|
1094
|
+
if (C()(*src.min_value_, *tgt.min_value_))
|
1095
|
+
*tgt.min_value_ = conditional_forward<FwdSk>(*src.min_value_);
|
1096
|
+
}
|
1097
|
+
|
1098
|
+
if (tgt.max_value_ == nullptr) {
|
1099
|
+
tgt.max_value_ = new (tgt.allocator_.allocate(1)) T(*src.max_value_);
|
1100
|
+
} else {
|
1101
|
+
if (C()(*tgt.max_value_, *src.max_value_))
|
1102
|
+
*tgt.max_value_ = conditional_forward<FwdSk>(*src.max_value_);
|
1103
|
+
}
|
1104
|
+
}
|
1105
|
+
|
1106
|
+
|
1107
|
+
template<typename T, typename C, typename A>
|
1108
|
+
template<typename FwdSk>
|
1109
|
+
void quantiles_sketch<T, C, A>::downsampling_merge(quantiles_sketch& tgt, FwdSk&& src) {
|
1110
|
+
if (src.get_k() % tgt.get_k() != 0) {
|
1111
|
+
throw std::invalid_argument("src.get_k() is not a multiple of tgt.get_k()");
|
1112
|
+
}
|
1113
|
+
if (src.is_empty()) {
|
1114
|
+
return;
|
1115
|
+
}
|
1116
|
+
|
1117
|
+
const uint16_t downsample_factor = src.get_k() / tgt.get_k();
|
1118
|
+
const uint8_t lg_sample_factor = count_trailing_zeros_in_u32(downsample_factor);
|
1119
|
+
|
1120
|
+
uint64_t new_n = src.get_n() + tgt.get_n();
|
1121
|
+
|
1122
|
+
// move items from src's base buffer
|
1123
|
+
for (uint16_t i = 0; i < src.base_buffer_.size(); ++i) {
|
1124
|
+
tgt.update(conditional_forward<FwdSk>(src.base_buffer_[i]));
|
1125
|
+
}
|
1126
|
+
|
1127
|
+
// check (after moving raw items) if we need to extend levels array
|
1128
|
+
uint8_t levels_needed = compute_levels_needed(tgt.get_k(), new_n);
|
1129
|
+
if (levels_needed > tgt.levels_.size()) {
|
1130
|
+
tgt.levels_.reserve(levels_needed);
|
1131
|
+
while (tgt.levels_.size() < levels_needed) {
|
1132
|
+
Level empty_level(tgt.allocator_);
|
1133
|
+
empty_level.reserve(tgt.get_k());
|
1134
|
+
tgt.levels_.push_back(std::move(empty_level));
|
1135
|
+
}
|
1136
|
+
}
|
1137
|
+
|
1138
|
+
Level down_buf(tgt.allocator_);
|
1139
|
+
down_buf.reserve(tgt.get_k());
|
1140
|
+
|
1141
|
+
Level scratch_buf(tgt.allocator_);
|
1142
|
+
scratch_buf.reserve(2 * tgt.get_k());
|
1143
|
+
|
1144
|
+
uint64_t src_pattern = src.bit_pattern_;
|
1145
|
+
for (uint8_t src_lvl = 0; src_pattern != 0; ++src_lvl, src_pattern >>= 1) {
|
1146
|
+
if ((src_pattern & 1) > 0) {
|
1147
|
+
down_buf.clear();
|
1148
|
+
scratch_buf.clear();
|
1149
|
+
|
1150
|
+
// zip with stride, leaving input buffer intact
|
1151
|
+
zip_buffer_with_stride(src.levels_[src_lvl], down_buf, downsample_factor);
|
1152
|
+
|
1153
|
+
// propagate-carry
|
1154
|
+
in_place_propagate_carry(src_lvl + lg_sample_factor,
|
1155
|
+
down_buf, scratch_buf,
|
1156
|
+
false, tgt);
|
1157
|
+
// update n_ at the end
|
1158
|
+
}
|
1159
|
+
}
|
1160
|
+
tgt.n_ = new_n;
|
1161
|
+
if ((tgt.get_n() / (2 * tgt.get_k())) != tgt.bit_pattern_) {
|
1162
|
+
throw std::logic_error("Failed internal consistency check after downsampling_merge()");
|
1163
|
+
}
|
1164
|
+
|
1165
|
+
// update min and max values
|
1166
|
+
// can't just check is_empty() since min and max might not have been set if
|
1167
|
+
// there were no base buffer items added via update()
|
1168
|
+
if (tgt.min_value_ == nullptr) {
|
1169
|
+
tgt.min_value_ = new (tgt.allocator_.allocate(1)) T(*src.min_value_);
|
1170
|
+
} else {
|
1171
|
+
if (C()(*src.min_value_, *tgt.min_value_))
|
1172
|
+
*tgt.min_value_ = conditional_forward<FwdSk>(*src.min_value_);
|
1173
|
+
}
|
1174
|
+
|
1175
|
+
if (tgt.max_value_ == nullptr) {
|
1176
|
+
tgt.max_value_ = new (tgt.allocator_.allocate(1)) T(*src.max_value_);
|
1177
|
+
} else {
|
1178
|
+
if (C()(*tgt.max_value_, *src.max_value_))
|
1179
|
+
*tgt.max_value_ = conditional_forward<FwdSk>(*src.max_value_);
|
1180
|
+
}
|
1181
|
+
}
|
1182
|
+
|
1183
|
+
|
1184
|
+
template<typename T, typename C, typename A>
|
1185
|
+
uint8_t quantiles_sketch<T, C, A>::lowest_zero_bit_starting_at(uint64_t bits, uint8_t starting_bit) {
|
1186
|
+
uint8_t pos = starting_bit & 0X3F;
|
1187
|
+
uint64_t my_bits = bits >> pos;
|
1188
|
+
|
1189
|
+
while ((my_bits & static_cast<uint64_t>(1)) != 0) {
|
1190
|
+
my_bits >>= 1;
|
1191
|
+
pos++;
|
1192
|
+
}
|
1193
|
+
return pos;
|
1194
|
+
}
|
1195
|
+
|
1196
|
+
template<typename T, typename C, typename A>
|
1197
|
+
class quantiles_sketch<T, C, A>::item_deleter {
|
1198
|
+
public:
|
1199
|
+
item_deleter(const A& allocator): allocator_(allocator) {}
|
1200
|
+
void operator() (T* ptr) {
|
1201
|
+
if (ptr != nullptr) {
|
1202
|
+
ptr->~T();
|
1203
|
+
allocator_.deallocate(ptr, 1);
|
1204
|
+
}
|
1205
|
+
}
|
1206
|
+
private:
|
1207
|
+
A allocator_;
|
1208
|
+
};
|
1209
|
+
|
1210
|
+
template<typename T, typename C, typename A>
|
1211
|
+
class quantiles_sketch<T, C, A>::items_deleter {
|
1212
|
+
public:
|
1213
|
+
items_deleter(const A& allocator, bool destroy, size_t num): allocator_(allocator), destroy_(destroy), num_(num) {}
|
1214
|
+
void operator() (T* ptr) {
|
1215
|
+
if (ptr != nullptr) {
|
1216
|
+
if (destroy_) {
|
1217
|
+
for (size_t i = 0; i < num_; ++i) {
|
1218
|
+
ptr[i].~T();
|
1219
|
+
}
|
1220
|
+
}
|
1221
|
+
allocator_.deallocate(ptr, num_);
|
1222
|
+
}
|
1223
|
+
}
|
1224
|
+
void set_destroy(bool destroy) { destroy_ = destroy; }
|
1225
|
+
private:
|
1226
|
+
A allocator_;
|
1227
|
+
bool destroy_;
|
1228
|
+
size_t num_;
|
1229
|
+
};
|
1230
|
+
|
1231
|
+
|
1232
|
+
// quantiles_sketch::const_iterator implementation
|
1233
|
+
|
1234
|
+
template<typename T, typename C, typename A>
|
1235
|
+
quantiles_sketch<T, C, A>::const_iterator::const_iterator(const Level& base_buffer,
|
1236
|
+
const std::vector<Level, AllocLevel>& levels,
|
1237
|
+
uint16_t k,
|
1238
|
+
uint64_t n,
|
1239
|
+
bool is_end):
|
1240
|
+
base_buffer_(base_buffer),
|
1241
|
+
levels_(levels),
|
1242
|
+
level_(-1),
|
1243
|
+
index_(0),
|
1244
|
+
bb_count_(compute_base_buffer_items(k, n)),
|
1245
|
+
bit_pattern_(compute_bit_pattern(k, n)),
|
1246
|
+
weight_(1),
|
1247
|
+
k_(k)
|
1248
|
+
{
|
1249
|
+
if (is_end) {
|
1250
|
+
// if exact mode: index_ = n is end
|
1251
|
+
// if sampling, level_ = max_level + 1 and index_ = 0 is end
|
1252
|
+
if (bit_pattern_ == 0) // only a valid check for exact mode in constructor
|
1253
|
+
index_ = static_cast<uint32_t>(n);
|
1254
|
+
else
|
1255
|
+
level_ = static_cast<int>(levels_.size());
|
1256
|
+
} else { // find first non-empty item
|
1257
|
+
if (bb_count_ == 0 && bit_pattern_ > 0) {
|
1258
|
+
level_ = 0;
|
1259
|
+
weight_ = 2;
|
1260
|
+
while ((bit_pattern_ & 0x01) == 0) {
|
1261
|
+
weight_ *= 2;
|
1262
|
+
++level_;
|
1263
|
+
bit_pattern_ >>= 1;
|
1264
|
+
}
|
1265
|
+
}
|
1266
|
+
}
|
1267
|
+
}
|
1268
|
+
|
1269
|
+
template<typename T, typename C, typename A>
|
1270
|
+
typename quantiles_sketch<T, C, A>::const_iterator& quantiles_sketch<T, C, A>::const_iterator::operator++() {
|
1271
|
+
++index_;
|
1272
|
+
|
1273
|
+
if ((level_ == -1 && index_ == base_buffer_.size() && levels_.size() > 0) || (level_ >= 0 && index_ == k_)) { // go to the next non-empty level
|
1274
|
+
index_ = 0;
|
1275
|
+
do {
|
1276
|
+
++level_;
|
1277
|
+
if (level_ > 0) bit_pattern_ = bit_pattern_ >> 1;
|
1278
|
+
if (bit_pattern_ == 0) return *this;
|
1279
|
+
weight_ *= 2;
|
1280
|
+
} while ((bit_pattern_ & static_cast<uint64_t>(1)) == 0);
|
1281
|
+
}
|
1282
|
+
return *this;
|
1283
|
+
}
|
1284
|
+
|
1285
|
+
template<typename T, typename C, typename A>
|
1286
|
+
typename quantiles_sketch<T, C, A>::const_iterator& quantiles_sketch<T, C, A>::const_iterator::operator++(int) {
|
1287
|
+
const_iterator tmp(*this);
|
1288
|
+
operator++();
|
1289
|
+
return tmp;
|
1290
|
+
}
|
1291
|
+
|
1292
|
+
template<typename T, typename C, typename A>
|
1293
|
+
bool quantiles_sketch<T, C, A>::const_iterator::operator==(const const_iterator& other) const {
|
1294
|
+
return level_ == other.level_ && index_ == other.index_;
|
1295
|
+
}
|
1296
|
+
|
1297
|
+
template<typename T, typename C, typename A>
|
1298
|
+
bool quantiles_sketch<T, C, A>::const_iterator::operator!=(const const_iterator& other) const {
|
1299
|
+
return !operator==(other);
|
1300
|
+
}
|
1301
|
+
|
1302
|
+
template<typename T, typename C, typename A>
|
1303
|
+
std::pair<const T&, const uint64_t> quantiles_sketch<T, C, A>::const_iterator::operator*() const {
|
1304
|
+
return std::pair<const T&, const uint64_t>(level_ == -1 ? base_buffer_[index_] : levels_[level_][index_], weight_);
|
1305
|
+
}
|
1306
|
+
|
1307
|
+
} /* namespace datasketches */
|
1308
|
+
|
1309
|
+
#endif // _QUANTILES_SKETCH_IMPL_HPP_
|