datasketches 0.1.2 → 0.2.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/CHANGELOG.md +5 -0
- data/ext/datasketches/cpc_wrapper.cpp +12 -13
- data/ext/datasketches/ext.cpp +1 -1
- data/ext/datasketches/ext.h +4 -0
- data/ext/datasketches/extconf.rb +1 -1
- data/ext/datasketches/fi_wrapper.cpp +6 -8
- data/ext/datasketches/hll_wrapper.cpp +13 -14
- data/ext/datasketches/kll_wrapper.cpp +28 -76
- data/ext/datasketches/theta_wrapper.cpp +27 -41
- data/ext/datasketches/vo_wrapper.cpp +4 -6
- data/lib/datasketches/version.rb +1 -1
- data/vendor/datasketches-cpp/CMakeLists.txt +1 -0
- data/vendor/datasketches-cpp/README.md +4 -4
- data/vendor/datasketches-cpp/common/include/MurmurHash3.h +7 -0
- data/vendor/datasketches-cpp/common/include/memory_operations.hpp +12 -0
- data/vendor/datasketches-cpp/common/test/CMakeLists.txt +24 -0
- data/vendor/datasketches-cpp/common/test/integration_test.cpp +77 -0
- data/vendor/datasketches-cpp/common/test/test_allocator.hpp +9 -1
- data/vendor/datasketches-cpp/cpc/include/cpc_common.hpp +3 -0
- data/vendor/datasketches-cpp/cpc/include/cpc_compressor.hpp +2 -2
- data/vendor/datasketches-cpp/cpc/include/cpc_compressor_impl.hpp +28 -19
- data/vendor/datasketches-cpp/cpc/include/cpc_sketch.hpp +8 -5
- data/vendor/datasketches-cpp/cpc/include/cpc_sketch_impl.hpp +19 -14
- data/vendor/datasketches-cpp/cpc/include/cpc_union.hpp +2 -2
- data/vendor/datasketches-cpp/cpc/include/cpc_union_impl.hpp +6 -6
- data/vendor/datasketches-cpp/cpc/include/cpc_util.hpp +0 -6
- data/vendor/datasketches-cpp/cpc/include/icon_estimator.hpp +3 -3
- data/vendor/datasketches-cpp/cpc/include/u32_table.hpp +3 -3
- data/vendor/datasketches-cpp/cpc/include/u32_table_impl.hpp +9 -9
- data/vendor/datasketches-cpp/cpc/test/CMakeLists.txt +1 -0
- data/vendor/datasketches-cpp/cpc/test/cpc_sketch_allocation_test.cpp +237 -0
- data/vendor/datasketches-cpp/fi/include/frequent_items_sketch.hpp +15 -10
- data/vendor/datasketches-cpp/fi/include/frequent_items_sketch_impl.hpp +40 -28
- data/vendor/datasketches-cpp/fi/include/reverse_purge_hash_map.hpp +19 -13
- data/vendor/datasketches-cpp/fi/include/reverse_purge_hash_map_impl.hpp +140 -124
- data/vendor/datasketches-cpp/fi/test/frequent_items_sketch_custom_type_test.cpp +15 -12
- data/vendor/datasketches-cpp/fi/test/reverse_purge_hash_map_test.cpp +3 -3
- data/vendor/datasketches-cpp/hll/CMakeLists.txt +3 -0
- data/vendor/datasketches-cpp/hll/include/AuxHashMap-internal.hpp +32 -57
- data/vendor/datasketches-cpp/hll/include/AuxHashMap.hpp +9 -8
- data/vendor/datasketches-cpp/hll/include/CompositeInterpolationXTable.hpp +2 -2
- data/vendor/datasketches-cpp/hll/include/CouponHashSet-internal.hpp +34 -48
- data/vendor/datasketches-cpp/hll/include/CouponHashSet.hpp +10 -10
- data/vendor/datasketches-cpp/hll/include/CouponList-internal.hpp +45 -77
- data/vendor/datasketches-cpp/hll/include/CouponList.hpp +11 -12
- data/vendor/datasketches-cpp/hll/include/CubicInterpolation.hpp +2 -2
- data/vendor/datasketches-cpp/hll/include/HarmonicNumbers.hpp +2 -2
- data/vendor/datasketches-cpp/hll/include/Hll4Array-internal.hpp +15 -14
- data/vendor/datasketches-cpp/hll/include/Hll4Array.hpp +1 -1
- data/vendor/datasketches-cpp/hll/include/Hll6Array-internal.hpp +10 -21
- data/vendor/datasketches-cpp/hll/include/Hll6Array.hpp +2 -3
- data/vendor/datasketches-cpp/hll/include/Hll8Array-internal.hpp +10 -21
- data/vendor/datasketches-cpp/hll/include/Hll8Array.hpp +2 -3
- data/vendor/datasketches-cpp/hll/include/HllArray-internal.hpp +28 -55
- data/vendor/datasketches-cpp/hll/include/HllArray.hpp +8 -8
- data/vendor/datasketches-cpp/hll/include/HllSketch-internal.hpp +9 -11
- data/vendor/datasketches-cpp/hll/include/HllSketchImpl.hpp +2 -1
- data/vendor/datasketches-cpp/hll/include/HllSketchImplFactory.hpp +34 -31
- data/vendor/datasketches-cpp/hll/include/HllUnion-internal.hpp +3 -28
- data/vendor/datasketches-cpp/hll/include/HllUtil.hpp +1 -1
- data/vendor/datasketches-cpp/hll/include/RelativeErrorTables.hpp +1 -1
- data/vendor/datasketches-cpp/hll/include/hll.hpp +6 -34
- data/vendor/datasketches-cpp/hll/test/AuxHashMapTest.cpp +7 -7
- data/vendor/datasketches-cpp/hll/test/CouponHashSetTest.cpp +2 -2
- data/vendor/datasketches-cpp/hll/test/CouponListTest.cpp +3 -3
- data/vendor/datasketches-cpp/hll/test/HllArrayTest.cpp +2 -2
- data/vendor/datasketches-cpp/hll/test/HllSketchTest.cpp +46 -50
- data/vendor/datasketches-cpp/kll/include/kll_quantile_calculator.hpp +1 -1
- data/vendor/datasketches-cpp/kll/include/kll_quantile_calculator_impl.hpp +3 -3
- data/vendor/datasketches-cpp/kll/include/kll_sketch.hpp +10 -3
- data/vendor/datasketches-cpp/kll/include/kll_sketch_impl.hpp +93 -75
- data/vendor/datasketches-cpp/kll/test/kll_sketch_custom_type_test.cpp +11 -10
- data/vendor/datasketches-cpp/kll/test/kll_sketch_test.cpp +45 -42
- data/vendor/datasketches-cpp/python/CMakeLists.txt +2 -0
- data/vendor/datasketches-cpp/python/README.md +6 -3
- data/vendor/datasketches-cpp/python/src/datasketches.cpp +2 -0
- data/vendor/datasketches-cpp/python/src/hll_wrapper.cpp +0 -2
- data/vendor/datasketches-cpp/python/src/kll_wrapper.cpp +3 -1
- data/vendor/datasketches-cpp/python/src/req_wrapper.cpp +246 -0
- data/vendor/datasketches-cpp/python/src/theta_wrapper.cpp +36 -26
- data/vendor/datasketches-cpp/python/tests/hll_test.py +0 -1
- data/vendor/datasketches-cpp/python/tests/kll_test.py +3 -3
- data/vendor/datasketches-cpp/python/tests/req_test.py +126 -0
- data/vendor/datasketches-cpp/python/tests/theta_test.py +28 -3
- data/vendor/datasketches-cpp/req/CMakeLists.txt +60 -0
- data/vendor/datasketches-cpp/{tuple/include/theta_a_not_b_experimental_impl.hpp → req/include/req_common.hpp} +17 -8
- data/vendor/datasketches-cpp/req/include/req_compactor.hpp +137 -0
- data/vendor/datasketches-cpp/req/include/req_compactor_impl.hpp +501 -0
- data/vendor/datasketches-cpp/req/include/req_quantile_calculator.hpp +69 -0
- data/vendor/datasketches-cpp/req/include/req_quantile_calculator_impl.hpp +60 -0
- data/vendor/datasketches-cpp/req/include/req_sketch.hpp +395 -0
- data/vendor/datasketches-cpp/req/include/req_sketch_impl.hpp +810 -0
- data/vendor/datasketches-cpp/req/test/CMakeLists.txt +43 -0
- data/vendor/datasketches-cpp/req/test/req_float_empty_from_java.sk +0 -0
- data/vendor/datasketches-cpp/req/test/req_float_estimation_from_java.sk +0 -0
- data/vendor/datasketches-cpp/req/test/req_float_exact_from_java.sk +0 -0
- data/vendor/datasketches-cpp/req/test/req_float_raw_items_from_java.sk +0 -0
- data/vendor/datasketches-cpp/req/test/req_float_single_item_from_java.sk +0 -0
- data/vendor/datasketches-cpp/req/test/req_sketch_custom_type_test.cpp +128 -0
- data/vendor/datasketches-cpp/req/test/req_sketch_test.cpp +494 -0
- data/vendor/datasketches-cpp/sampling/include/var_opt_sketch.hpp +10 -9
- data/vendor/datasketches-cpp/sampling/include/var_opt_sketch_impl.hpp +82 -70
- data/vendor/datasketches-cpp/sampling/include/var_opt_union.hpp +5 -5
- data/vendor/datasketches-cpp/sampling/include/var_opt_union_impl.hpp +7 -7
- data/vendor/datasketches-cpp/sampling/test/CMakeLists.txt +1 -0
- data/vendor/datasketches-cpp/sampling/test/var_opt_allocation_test.cpp +96 -0
- data/vendor/datasketches-cpp/sampling/test/var_opt_union_test.cpp +0 -31
- data/vendor/datasketches-cpp/setup.py +5 -3
- data/vendor/datasketches-cpp/theta/CMakeLists.txt +30 -3
- data/vendor/datasketches-cpp/{tuple → theta}/include/bounds_on_ratios_in_sampled_sets.hpp +2 -1
- data/vendor/datasketches-cpp/{tuple → theta}/include/bounds_on_ratios_in_theta_sketched_sets.hpp +1 -1
- data/vendor/datasketches-cpp/theta/include/theta_a_not_b.hpp +12 -29
- data/vendor/datasketches-cpp/theta/include/theta_a_not_b_impl.hpp +5 -46
- data/vendor/datasketches-cpp/{tuple → theta}/include/theta_comparators.hpp +0 -0
- data/vendor/datasketches-cpp/{tuple → theta}/include/theta_constants.hpp +2 -0
- data/vendor/datasketches-cpp/{tuple → theta}/include/theta_helpers.hpp +0 -0
- data/vendor/datasketches-cpp/theta/include/theta_intersection.hpp +22 -29
- data/vendor/datasketches-cpp/{tuple → theta}/include/theta_intersection_base.hpp +0 -0
- data/vendor/datasketches-cpp/{tuple → theta}/include/theta_intersection_base_impl.hpp +0 -0
- data/vendor/datasketches-cpp/theta/include/theta_intersection_impl.hpp +8 -90
- data/vendor/datasketches-cpp/{tuple/test/theta_union_experimental_test.cpp → theta/include/theta_jaccard_similarity.hpp} +11 -18
- data/vendor/datasketches-cpp/{tuple/include/jaccard_similarity.hpp → theta/include/theta_jaccard_similarity_base.hpp} +6 -22
- data/vendor/datasketches-cpp/{tuple → theta}/include/theta_set_difference_base.hpp +0 -0
- data/vendor/datasketches-cpp/{tuple → theta}/include/theta_set_difference_base_impl.hpp +5 -0
- data/vendor/datasketches-cpp/theta/include/theta_sketch.hpp +132 -266
- data/vendor/datasketches-cpp/theta/include/theta_sketch_impl.hpp +200 -650
- data/vendor/datasketches-cpp/theta/include/theta_union.hpp +27 -60
- data/vendor/datasketches-cpp/{tuple → theta}/include/theta_union_base.hpp +1 -1
- data/vendor/datasketches-cpp/{tuple → theta}/include/theta_union_base_impl.hpp +5 -0
- data/vendor/datasketches-cpp/theta/include/theta_union_impl.hpp +13 -69
- data/vendor/datasketches-cpp/{tuple → theta}/include/theta_update_sketch_base.hpp +3 -19
- data/vendor/datasketches-cpp/{tuple → theta}/include/theta_update_sketch_base_impl.hpp +6 -1
- data/vendor/datasketches-cpp/theta/test/CMakeLists.txt +1 -0
- data/vendor/datasketches-cpp/{tuple → theta}/test/theta_jaccard_similarity_test.cpp +2 -3
- data/vendor/datasketches-cpp/theta/test/theta_sketch_test.cpp +37 -234
- data/vendor/datasketches-cpp/tuple/CMakeLists.txt +3 -35
- data/vendor/datasketches-cpp/tuple/include/tuple_jaccard_similarity.hpp +38 -0
- data/vendor/datasketches-cpp/tuple/include/tuple_sketch.hpp +28 -13
- data/vendor/datasketches-cpp/tuple/include/tuple_sketch_impl.hpp +6 -6
- data/vendor/datasketches-cpp/tuple/test/CMakeLists.txt +1 -6
- data/vendor/datasketches-cpp/tuple/test/tuple_a_not_b_test.cpp +1 -4
- data/vendor/datasketches-cpp/tuple/test/tuple_intersection_test.cpp +1 -4
- data/vendor/datasketches-cpp/tuple/test/tuple_jaccard_similarity_test.cpp +2 -1
- data/vendor/datasketches-cpp/tuple/test/tuple_sketch_allocation_test.cpp +2 -2
- data/vendor/datasketches-cpp/tuple/test/tuple_union_test.cpp +1 -4
- metadata +43 -34
- data/vendor/datasketches-cpp/tuple/include/theta_a_not_b_experimental.hpp +0 -53
- data/vendor/datasketches-cpp/tuple/include/theta_intersection_experimental.hpp +0 -78
- data/vendor/datasketches-cpp/tuple/include/theta_intersection_experimental_impl.hpp +0 -43
- data/vendor/datasketches-cpp/tuple/include/theta_sketch_experimental.hpp +0 -393
- data/vendor/datasketches-cpp/tuple/include/theta_sketch_experimental_impl.hpp +0 -481
- data/vendor/datasketches-cpp/tuple/include/theta_union_experimental.hpp +0 -88
- data/vendor/datasketches-cpp/tuple/include/theta_union_experimental_impl.hpp +0 -47
- data/vendor/datasketches-cpp/tuple/test/theta_a_not_b_experimental_test.cpp +0 -250
- data/vendor/datasketches-cpp/tuple/test/theta_compact_empty_from_java.sk +0 -0
- data/vendor/datasketches-cpp/tuple/test/theta_compact_estimation_from_java.sk +0 -0
- data/vendor/datasketches-cpp/tuple/test/theta_compact_single_item_from_java.sk +0 -0
- data/vendor/datasketches-cpp/tuple/test/theta_intersection_experimental_test.cpp +0 -224
- data/vendor/datasketches-cpp/tuple/test/theta_sketch_experimental_test.cpp +0 -247
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* Licensed to the Apache Software Foundation (ASF) under one
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* or more contributor license agreements. See the NOTICE file
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* distributed with this work for additional information
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* regarding copyright ownership. The ASF licenses this file
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* to you under the Apache License, Version 2.0 (the
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* "License"); you may not use this file except in compliance
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* with the License. You may obtain a copy of the License at
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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* Unless required by applicable law or agreed to in writing,
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* software distributed under the License is distributed on an
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* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
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* KIND, either express or implied. See the License for the
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* specific language governing permissions and limitations
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* under the License.
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*/
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#include "req_sketch.hpp"
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#include <pybind11/pybind11.h>
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#include <pybind11/stl.h>
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#include <pybind11/numpy.h>
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#include <sstream>
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#include <vector>
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namespace py = pybind11;
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namespace datasketches {
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namespace python {
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template<typename T>
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req_sketch<T> req_sketch_deserialize(py::bytes sk_bytes) {
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std::string sk_str = sk_bytes; // implicit cast
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return req_sketch<T>::deserialize(sk_str.c_str(), sk_str.length());
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}
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template<typename T>
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py::object req_sketch_serialize(const req_sketch<T>& sk) {
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auto ser_result = sk.serialize();
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return py::bytes((char*)ser_result.data(), ser_result.size());
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}
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// maybe possible to disambiguate the static vs method rank error calls, but
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template<typename T>
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double req_sketch_generic_normalized_rank_error(uint16_t k, bool pmf) {
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return req_sketch<T>::get_normalized_rank_error(k, pmf);
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}
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template<typename T>
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double req_sketch_get_rank(const req_sketch<T>& sk,
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const T& item,
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bool inclusive) {
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if (inclusive)
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return sk.template get_rank<true>(item);
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}
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template<typename T>
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T req_sketch_get_quantile(const req_sketch<T>& sk,
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double rank,
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bool inclusive) {
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return T(sk.template get_quantile<true>(rank));
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}
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template<typename T>
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py::list req_sketch_get_quantiles(const req_sketch<T>& sk,
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std::vector<double>& fractions,
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bool inclusive) {
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list[i] = result[i];
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}
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return list;
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}
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? sk.template get_PMF<true>(&split_points[0], n_points)
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for (size_t i = 0; i <= n_points; ++i) {
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list[i] = result[i];
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return list;
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? sk.template get_CDF<true>(&split_points[0], n_points)
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list[i] = result[i];
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}
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return list;
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}
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void req_sketch_update(req_sketch<T>& sk, py::array_t<T, py::array::c_style | py::array::forcecast> items) {
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throw std::invalid_argument("input data must have only one dimension. Found: "
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+ std::to_string(items.ndim()));
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}
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auto data = items.template unchecked<1>();
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for (uint32_t i = 0; i < data.size(); ++i) {
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sk.update(data(i));
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}
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}
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}
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}
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namespace dspy = datasketches::python;
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template<typename T>
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void bind_req_sketch(py::module &m, const char* name) {
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using namespace datasketches;
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py::class_<req_sketch<T>>(m, name)
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.def(py::init<uint16_t, bool>(), py::arg("k")=12, py::arg("is_hra")=true)
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.def(py::init<const req_sketch<T>&>())
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.def("update", (void (req_sketch<T>::*)(const T&)) &req_sketch<T>::update, py::arg("item"),
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"Updates the sketch with the given value")
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.def("update", &dspy::req_sketch_update<T>, py::arg("array"),
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"Updates the sketch with the values in the given array")
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.def("merge", (void (req_sketch<T>::*)(const req_sketch<T>&)) &req_sketch<T>::merge, py::arg("sketch"),
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"Merges the provided sketch into the this one")
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.def("__str__", &req_sketch<T>::to_string, py::arg("print_levels")=false, py::arg("print_items")=false,
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"Produces a string summary of the sketch")
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.def("to_string", &req_sketch<T>::to_string, py::arg("print_levels")=false, py::arg("print_items")=false,
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"Produces a string summary of the sketch")
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.def("is_hra", &req_sketch<T>::is_HRA,
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"Returns True if the sketch is in High Rank Accuracy mode, otherwise False")
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.def("is_empty", &req_sketch<T>::is_empty,
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"Returns True if the sketch is empty, otherwise False")
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.def("get_k", &req_sketch<T>::get_k,
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"Returns the configured parameter k")
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.def("get_n", &req_sketch<T>::get_n,
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"Returns the length of the input stream")
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.def("get_num_retained", &req_sketch<T>::get_num_retained,
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"Returns the number of retained items (samples) in the sketch")
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.def("is_estimation_mode", &req_sketch<T>::is_estimation_mode,
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"Returns True if the sketch is in estimation mode, otherwise False")
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.def("get_min_value", &req_sketch<T>::get_min_value,
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"Returns the minimum value from the stream. If empty, req_floats_sketch returns nan; req_ints_sketch throws a RuntimeError")
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.def("get_max_value", &req_sketch<T>::get_max_value,
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"Returns the maximum value from the stream. If empty, req_floats_sketch returns nan; req_ints_sketch throws a RuntimeError")
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.def("get_quantile", &dspy::req_sketch_get_quantile<T>, py::arg("rank"), py::arg("inclusive")=false,
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"Returns an approximation to the value of the data item "
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"that would be preceded by the given fraction of a hypothetical sorted "
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"version of the input stream so far.\n"
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"Note that this method has a fairly large overhead (microseconds instead of nanoseconds) "
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"so it should not be called multiple times to get different quantiles from the same "
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"sketch. Instead use get_quantiles(), which pays the overhead only once.\n"
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"For req_floats_sketch: if the sketch is empty this returns nan. "
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"For req_ints_sketch: if the sketch is empty this throws a RuntimeError.")
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.def("get_quantiles", &dspy::req_sketch_get_quantiles<T>, py::arg("ranks"), py::arg("inclusive")=false,
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"This is a more efficient multiple-query version of get_quantile().\n"
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"This returns an array that could have been generated by using get_quantile() for each "
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"fractional rank separately, but would be very inefficient. "
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"This method incurs the internal set-up overhead once and obtains multiple quantile values in "
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"a single query. It is strongly recommend that this method be used instead of multiple calls "
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"to get_quantile().\n"
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"If the sketch is empty this returns an empty vector.")
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.def("get_rank", &dspy::req_sketch_get_rank<T>, py::arg("item"), py::arg("inclusive")=false,
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"Returns an approximation to the normalized (fractional) rank of the given value from 0 to 1, inclusive.\n"
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"The resulting approximation has a probabilistic guarantee that can be obtained from the "
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"get_normalized_rank_error(False) function.\n"
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"If the sketch is empty this returns nan.")
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.def("get_pmf", &dspy::req_sketch_get_pmf<T>, py::arg("split_points"), py::arg("inclusive")=false,
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"Returns an approximation to the Probability Mass Function (PMF) of the input stream "
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"given a set of split points (values).\n"
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"The resulting approximations have a probabilistic guarantee that can be obtained from the "
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"get_normalized_rank_error(True) function.\n"
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"If the sketch is empty this returns an empty vector.\n"
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"split_points is an array of m unique, monotonically increasing float values "
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"that divide the real number line into m+1 consecutive disjoint intervals.\n"
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"The definition of an 'interval' is inclusive of the left split point (or minimum value) and "
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"exclusive of the right split point, with the exception that the last interval will include "
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"the maximum value.\n"
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"It is not necessary to include either the min or max values in these split points.")
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.def("get_cdf", &dspy::req_sketch_get_cdf<T>, py::arg("split_points"), py::arg("inclusive")=false,
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"Returns an approximation to the Cumulative Distribution Function (CDF), which is the "
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"cumulative analog of the PMF, of the input stream given a set of split points (values).\n"
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"The resulting approximations have a probabilistic guarantee that can be obtained from the "
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"get_normalized_rank_error(True) function.\n"
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"If the sketch is empty this returns an empty vector.\n"
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"split_points is an array of m unique, monotonically increasing float values "
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"that divide the real number line into m+1 consecutive disjoint intervals.\n"
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"The definition of an 'interval' is inclusive of the left split point (or minimum value) and "
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"exclusive of the right split point, with the exception that the last interval will include "
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"the maximum value.\n"
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"It is not necessary to include either the min or max values in these split points.")
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.def("get_rank_lower_bound", &req_sketch<T>::get_rank_lower_bound, py::arg("rank"), py::arg("num_std_dev"),
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"Returns an approximate lower bound on the given normalized rank.\n"
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"Normalized rank must be a value between 0.0 and 1.0 (inclusive); "
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"the number of standard deviations must be 1, 2, or 3.")
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.def("get_rank_upper_bound", &req_sketch<T>::get_rank_upper_bound, py::arg("rank"), py::arg("num_std_dev"),
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"Returns an approximate upper bound on the given normalized rank.\n"
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"Normalized rank must be a value between 0.0 and 1.0 (inclusive); "
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"the number of standard deviations must be 1, 2, or 3.")
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.def_static("get_RSE", &req_sketch<T>::get_RSE,
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py::arg("k"), py::arg("rank"), py::arg("is_hra"), py::arg("n"),
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"Returns an a priori estimate of relative standard error (RSE, expressed as a number in [0,1]). "
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"Derived from Lemma 12 in http://arxiv.org/abs/2004.01668v2, but the constant factors have been "
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"modified based on empirical measurements, for a given value of parameter k.\n"
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"Normalized rank must be a value between 0.0 and 1.0 (inclusive). If is_hra is True, uses high "
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"rank accuracy mode, else low rank accuracy. N is an estimate of the total number of points "
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"provided to the sketch.")
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.def("serialize", &dspy::req_sketch_serialize<T>, "Serializes the sketch into a bytes object")
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.def_static("deserialize", &dspy::req_sketch_deserialize<T>, "Deserializes the sketch from a bytes object")
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;
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}
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void init_req(py::module &m) {
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bind_req_sketch<int>(m, "req_ints_sketch");
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bind_req_sketch<float>(m, "req_floats_sketch");
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}
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@@ -19,11 +19,13 @@
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#include <sstream>
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#include <pybind11/pybind11.h>
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#include <pybind11/stl.h>
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#include "theta_intersection.hpp"
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#include "theta_jaccard_similarity.hpp"
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#include "common_defs.hpp"
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@@ -48,23 +50,13 @@ theta_union theta_union_factory(uint8_t lg_k, double p, uint64_t seed) {
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theta_sketch* theta_sketch_deserialize(py::bytes skBytes, uint64_t seed) {
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std::string skStr = skBytes; // implicit cast
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return theta_sketch::deserialize(skStr.c_str(), skStr.length(), seed).release();
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}
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py::object theta_sketch_serialize(const theta_sketch& sk) {
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return py::bytes((char*)serResult.data(), serResult.size());
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}
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uint16_t theta_sketch_get_seed_hash(const theta_sketch& sk) {
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return sk.get_seed_hash();
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}
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return
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py::object compact_theta_sketch_serialize(const compact_theta_sketch& sk) {
|
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auto serResult = sk.serialize();
|
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return py::bytes((char*)serResult.data(), serResult.size());
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compact_theta_sketch compact_theta_sketch_deserialize(py::bytes skBytes, uint64_t seed) {
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@@ -72,6 +64,10 @@ compact_theta_sketch compact_theta_sketch_deserialize(py::bytes skBytes, uint64_
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return compact_theta_sketch::deserialize(skStr.c_str(), skStr.length(), seed);
|
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}
|
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py::list theta_jaccard_sim_computation(const theta_sketch& sketch_a, const theta_sketch& sketch_b) {
|
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return py::cast(theta_jaccard_similarity::jaccard(sketch_a, sketch_b));
|
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}
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}
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@@ -81,16 +77,12 @@ void init_theta(py::module &m) {
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using namespace datasketches;
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py::class_<theta_sketch>(m, "theta_sketch")
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.def("serialize", &dspy::theta_sketch_serialize,
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"Serializes the sketch into a bytes object")
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.def_static("deserialize", &dspy::theta_sketch_deserialize, py::arg("bytes"), py::arg("seed")=DEFAULT_SEED,
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"Reads a bytes object and returns the corresponding cpc_sketch")
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.def("__str__", &theta_sketch::to_string, py::arg("print_items")=false,
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81
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"Produces a string summary of the sketch")
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90
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.def("to_string", &theta_sketch::to_string, py::arg("print_items")=false,
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"Produces a string summary of the sketch")
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.def("is_empty", &theta_sketch::is_empty,
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"Returns True if the sketch is empty, otherwise
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+
"Returns True if the sketch is empty, otherwise False")
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.def("get_estimate", &theta_sketch::get_estimate,
|
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"Estimate of the distinct count of the input stream")
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.def("get_upper_bound", &theta_sketch::get_upper_bound, py::arg("num_std_devs"),
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@@ -121,23 +113,22 @@ void init_theta(py::module &m) {
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"Updates the sketch with the given string")
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.def("compact", &update_theta_sketch::compact, py::arg("ordered")=true,
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"Returns a compacted form of the sketch, optionally sorting it")
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.def_static("deserialize", &dspy::update_theta_sketch_deserialize,
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py::arg("bytes"), py::arg("seed")=DEFAULT_SEED,
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"Reads a bytes object and returns the corresponding update_theta_sketch")
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;
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py::class_<compact_theta_sketch, theta_sketch>(m, "compact_theta_sketch")
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.def(py::init<const compact_theta_sketch&>())
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.def(py::init<const theta_sketch&, bool>())
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.def("serialize", &dspy::compact_theta_sketch_serialize,
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"Serializes the sketch into a bytes object")
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.def_static("deserialize", &dspy::compact_theta_sketch_deserialize,
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py::arg("bytes"), py::arg("seed")=DEFAULT_SEED,
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"Reads a bytes object and returns the corresponding
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"Reads a bytes object and returns the corresponding compact_theta_sketch")
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;
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py::class_<theta_union>(m, "theta_union")
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.def(py::init(&dspy::theta_union_factory),
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py::arg("lg_k")=update_theta_sketch::builder::DEFAULT_LG_K, py::arg("p")=1.0, py::arg("seed")=DEFAULT_SEED)
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.def("update", &theta_union::update
|
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.def("update", &theta_union::update<const theta_sketch&>, py::arg("sketch"),
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"Updates the union with the given sketch")
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.def("get_result", &theta_union::get_result, py::arg("ordered")=true,
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"Returns the sketch corresponding to the union result")
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@@ -146,17 +137,36 @@ void init_theta(py::module &m) {
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py::class_<theta_intersection>(m, "theta_intersection")
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.def(py::init<uint64_t>(), py::arg("seed")=DEFAULT_SEED)
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.def(py::init<const theta_intersection&>())
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.def("update", &theta_intersection::update
|
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+
.def("update", &theta_intersection::update<const theta_sketch&>, py::arg("sketch"),
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"Intersections the provided sketch with the current intersection state")
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.def("get_result", &theta_intersection::get_result, py::arg("ordered")=true,
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"Returns the sketch corresponding to the intersection result")
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.def("has_result", &theta_intersection::has_result,
|
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-
"Returns True if the intersection has a valid result,
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+
"Returns True if the intersection has a valid result, otherwise False")
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;
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py::class_<theta_a_not_b>(m, "theta_a_not_b")
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.def(py::init<uint64_t>(), py::arg("seed")=DEFAULT_SEED)
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159
|
-
.def("compute", &theta_a_not_b::compute
|
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+
.def("compute", &theta_a_not_b::compute<const theta_sketch&, const theta_sketch&>, py::arg("a"), py::arg("b"), py::arg("ordered")=true,
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"Returns a sketch with the reuslt of appying the A-not-B operation on the given inputs")
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;
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+
|
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+
py::class_<theta_jaccard_similarity>(m, "theta_jaccard_similarity")
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+
.def_static("jaccard", &dspy::theta_jaccard_sim_computation,
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+
py::arg("sketch_a"), py::arg("sketch_b"),
|
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157
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+
"Returns a list with {lower_bound, estimate, upper_bound} of the Jaccard similarity between sketches")
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+
.def_static("exactly_equal", &theta_jaccard_similarity::exactly_equal<const theta_sketch&, const theta_sketch&>,
|
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+
py::arg("sketch_a"), py::arg("sketch_b"),
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+
"Returns True if sketch_a and sketch_b are equivalent, otherwise False")
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161
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+
.def_static("similarity_test", &theta_jaccard_similarity::similarity_test<const theta_sketch&, const theta_sketch&>,
|
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162
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+
py::arg("actual"), py::arg("expected"), py::arg("threshold"),
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163
|
+
"Tests similarity of an actual sketch against an expected sketch. Computers the lower bound of the Jaccard "
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164
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+
"index J_{LB} of the actual and expected sketches. If J_{LB} >= threshold, then the sketches are considered "
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165
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+
"to be similar sith a confidence of 97.7% and returns True, otherwise False.")
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166
|
+
.def_static("dissimilarity_test", &theta_jaccard_similarity::dissimilarity_test<const theta_sketch&, const theta_sketch&>,
|
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167
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+
py::arg("actual"), py::arg("expected"), py::arg("threshold"),
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168
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+
"Tests dissimilarity of an actual sketch against an expected sketch. Computers the lower bound of the Jaccard "
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169
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+
"index J_{UB} of the actual and expected sketches. If J_{UB} <= threshold, then the sketches are considered "
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+
"to be dissimilar sith a confidence of 97.7% and returns True, otherwise False.")
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+
;
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}
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@@ -113,7 +113,6 @@ class HllTest(unittest.TestCase):
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113
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self.assertGreaterEqual(union.get_upper_bound(1), union.get_estimate())
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self.assertEqual(union.lg_config_k, k)
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self.assertFalse(union.is_compact())
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self.assertFalse(union.is_empty())
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sk = union.get_result()
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@@ -16,9 +16,7 @@
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# under the License.
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import unittest
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-
from datasketches import
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vector_of_kll_ints_sketches,
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vector_of_kll_floats_sketches)
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from datasketches import kll_ints_sketch, kll_floats_sketch
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import numpy as np
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class KllTest(unittest.TestCase):
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@@ -59,6 +57,7 @@ class KllTest(unittest.TestCase):
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self.assertFalse(kll.is_empty())
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self.assertTrue(kll.is_estimation_mode())
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self.assertEqual(kll.get_n(), n)
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self.assertEqual(kll.get_k(), k)
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self.assertLess(kll.get_num_retained(), n)
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# merging itself will double the number of items the sketch has seen
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@@ -86,6 +85,7 @@ class KllTest(unittest.TestCase):
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self.assertEqual(kll.get_n(), n)
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self.assertFalse(kll.is_empty())
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self.assertFalse(kll.is_estimation_mode()) # n < k
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self.assertEqual(kll.get_k(), k)
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pmf = kll.get_pmf([round(n/2)])
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self.assertIsNotNone(pmf)
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@@ -0,0 +1,126 @@
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1
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# Licensed to the Apache Software Foundation (ASF) under one
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# or more contributor license agreements. See the NOTICE file
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3
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# distributed with this work for additional information
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# regarding copyright ownership. The ASF licenses this file
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# to you under the Apache License, Version 2.0 (the
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# "License"); you may not use this file except in compliance
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# with the License. You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing,
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# software distributed under the License is distributed on an
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# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
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# KIND, either express or implied. See the License for the
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# specific language governing permissions and limitations
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# under the License.
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import unittest
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from datasketches import req_ints_sketch, req_floats_sketch
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import numpy as np
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class reqTest(unittest.TestCase):
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def test_req_example(self):
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k = 12
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n = 2 ** 20
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# create a sketch and inject ~1 million N(0,1) points as an array and as a single item
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req = req_floats_sketch(k, True) # high rank accuracy
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req.update(np.random.normal(size=n-1))
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req.update(0.0)
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# 0 should be near the median
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self.assertAlmostEqual(0.5, req.get_rank(0.0), delta=0.03)
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+
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# the median should be near 0
|
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self.assertAlmostEqual(0.0, req.get_quantile(0.5), delta=0.03)
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+
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# we also track the min/max independently from the rest of the data
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# which lets us know the full observed data range
|
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|
+
self.assertLessEqual(req.get_min_value(), req.get_quantile(0.01))
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41
|
+
self.assertLessEqual(0.0, req.get_rank(req.get_min_value()))
|
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|
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self.assertGreaterEqual(req.get_max_value(), req.get_quantile(0.99))
|
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|
+
self.assertGreaterEqual(1.0, req.get_rank(req.get_max_value()))
|
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44
|
+
|
|
45
|
+
# we can also extract a list of values at a time,
|
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|
+
# here the values should give us something close to [-2, -1, 0, 1, 2].
|
|
47
|
+
# then get the CDF, which will return something close to
|
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48
|
+
# the original values used in get_quantiles()
|
|
49
|
+
# finally, can check the normalized rank error bound
|
|
50
|
+
pts = req.get_quantiles([0.0228, 0.1587, 0.5, 0.8413, 0.9772])
|
|
51
|
+
cdf = req.get_cdf(pts) # include 1.0 at end to account for all probability mass
|
|
52
|
+
self.assertEqual(len(cdf), len(pts)+1)
|
|
53
|
+
|
|
54
|
+
# For relative error quantiles, the error depends on the actual rank
|
|
55
|
+
# so we need to use that to detemrine the bounds
|
|
56
|
+
est = req.get_rank(0.999, True)
|
|
57
|
+
lb = req.get_rank_lower_bound(est, 1)
|
|
58
|
+
ub = req.get_rank_upper_bound(est, 1)
|
|
59
|
+
self.assertLessEqual(lb, est)
|
|
60
|
+
self.assertLessEqual(est, ub)
|
|
61
|
+
|
|
62
|
+
# and a few basic queries about the sketch
|
|
63
|
+
self.assertFalse(req.is_empty())
|
|
64
|
+
self.assertTrue(req.is_estimation_mode())
|
|
65
|
+
self.assertEqual(req.get_n(), n)
|
|
66
|
+
self.assertLess(req.get_num_retained(), n)
|
|
67
|
+
self.assertEqual(req.get_k(), k)
|
|
68
|
+
|
|
69
|
+
# merging itself will double the number of items the sketch has seen
|
|
70
|
+
req.merge(req)
|
|
71
|
+
self.assertEqual(req.get_n(), 2*n)
|
|
72
|
+
|
|
73
|
+
# we can then serialize and reconstruct the sketch
|
|
74
|
+
req_bytes = req.serialize()
|
|
75
|
+
new_req = req.deserialize(req_bytes)
|
|
76
|
+
self.assertEqual(req.get_num_retained(), new_req.get_num_retained())
|
|
77
|
+
self.assertEqual(req.get_min_value(), new_req.get_min_value())
|
|
78
|
+
self.assertEqual(req.get_max_value(), new_req.get_max_value())
|
|
79
|
+
self.assertEqual(req.get_quantile(0.7), new_req.get_quantile(0.7))
|
|
80
|
+
self.assertEqual(req.get_rank(0.0), new_req.get_rank(0.0))
|
|
81
|
+
|
|
82
|
+
def test_req_ints_sketch(self):
|
|
83
|
+
k = 100
|
|
84
|
+
n = 10
|
|
85
|
+
req = req_ints_sketch(k)
|
|
86
|
+
for i in range(0, n):
|
|
87
|
+
req.update(i)
|
|
88
|
+
|
|
89
|
+
self.assertEqual(req.get_min_value(), 0)
|
|
90
|
+
self.assertEqual(req.get_max_value(), n-1)
|
|
91
|
+
self.assertEqual(req.get_n(), n)
|
|
92
|
+
self.assertFalse(req.is_empty())
|
|
93
|
+
self.assertFalse(req.is_estimation_mode()) # n < k
|
|
94
|
+
self.assertEqual(req.get_k(), k)
|
|
95
|
+
|
|
96
|
+
pmf = req.get_pmf([round(n/2)])
|
|
97
|
+
self.assertIsNotNone(pmf)
|
|
98
|
+
self.assertEqual(len(pmf), 2)
|
|
99
|
+
|
|
100
|
+
cdf = req.get_cdf([round(n/2)])
|
|
101
|
+
self.assertIsNotNone(cdf)
|
|
102
|
+
self.assertEqual(len(cdf), 2)
|
|
103
|
+
|
|
104
|
+
self.assertEqual(req.get_quantile(0.5), round(n/2))
|
|
105
|
+
quants = req.get_quantiles([0.25, 0.5, 0.75])
|
|
106
|
+
self.assertIsNotNone(quants)
|
|
107
|
+
self.assertEqual(len(quants), 3)
|
|
108
|
+
|
|
109
|
+
self.assertEqual(req.get_rank(round(n/2)), 0.5)
|
|
110
|
+
|
|
111
|
+
# merge self
|
|
112
|
+
req.merge(req)
|
|
113
|
+
self.assertEqual(req.get_n(), 2 * n)
|
|
114
|
+
|
|
115
|
+
sk_bytes = req.serialize()
|
|
116
|
+
self.assertTrue(isinstance(req_ints_sketch.deserialize(sk_bytes), req_ints_sketch))
|
|
117
|
+
|
|
118
|
+
def test_req_floats_sketch(self):
|
|
119
|
+
# already tested ints and it's templatized, so just make sure it instantiates properly
|
|
120
|
+
k = 75
|
|
121
|
+
req = req_floats_sketch(k, False) # low rank accuracy
|
|
122
|
+
self.assertTrue(req.is_empty())
|
|
123
|
+
self.assertFalse(req.is_hra())
|
|
124
|
+
|
|
125
|
+
if __name__ == '__main__':
|
|
126
|
+
unittest.main()
|