datasketches 0.1.2 → 0.2.0
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- checksums.yaml +4 -4
- data/CHANGELOG.md +5 -0
- data/ext/datasketches/cpc_wrapper.cpp +12 -13
- data/ext/datasketches/ext.cpp +1 -1
- data/ext/datasketches/ext.h +4 -0
- data/ext/datasketches/extconf.rb +1 -1
- data/ext/datasketches/fi_wrapper.cpp +6 -8
- data/ext/datasketches/hll_wrapper.cpp +13 -14
- data/ext/datasketches/kll_wrapper.cpp +28 -76
- data/ext/datasketches/theta_wrapper.cpp +27 -41
- data/ext/datasketches/vo_wrapper.cpp +4 -6
- data/lib/datasketches/version.rb +1 -1
- data/vendor/datasketches-cpp/CMakeLists.txt +1 -0
- data/vendor/datasketches-cpp/README.md +4 -4
- data/vendor/datasketches-cpp/common/include/MurmurHash3.h +7 -0
- data/vendor/datasketches-cpp/common/include/memory_operations.hpp +12 -0
- data/vendor/datasketches-cpp/common/test/CMakeLists.txt +24 -0
- data/vendor/datasketches-cpp/common/test/integration_test.cpp +77 -0
- data/vendor/datasketches-cpp/common/test/test_allocator.hpp +9 -1
- data/vendor/datasketches-cpp/cpc/include/cpc_common.hpp +3 -0
- data/vendor/datasketches-cpp/cpc/include/cpc_compressor.hpp +2 -2
- data/vendor/datasketches-cpp/cpc/include/cpc_compressor_impl.hpp +28 -19
- data/vendor/datasketches-cpp/cpc/include/cpc_sketch.hpp +8 -5
- data/vendor/datasketches-cpp/cpc/include/cpc_sketch_impl.hpp +19 -14
- data/vendor/datasketches-cpp/cpc/include/cpc_union.hpp +2 -2
- data/vendor/datasketches-cpp/cpc/include/cpc_union_impl.hpp +6 -6
- data/vendor/datasketches-cpp/cpc/include/cpc_util.hpp +0 -6
- data/vendor/datasketches-cpp/cpc/include/icon_estimator.hpp +3 -3
- data/vendor/datasketches-cpp/cpc/include/u32_table.hpp +3 -3
- data/vendor/datasketches-cpp/cpc/include/u32_table_impl.hpp +9 -9
- data/vendor/datasketches-cpp/cpc/test/CMakeLists.txt +1 -0
- data/vendor/datasketches-cpp/cpc/test/cpc_sketch_allocation_test.cpp +237 -0
- data/vendor/datasketches-cpp/fi/include/frequent_items_sketch.hpp +15 -10
- data/vendor/datasketches-cpp/fi/include/frequent_items_sketch_impl.hpp +40 -28
- data/vendor/datasketches-cpp/fi/include/reverse_purge_hash_map.hpp +19 -13
- data/vendor/datasketches-cpp/fi/include/reverse_purge_hash_map_impl.hpp +140 -124
- data/vendor/datasketches-cpp/fi/test/frequent_items_sketch_custom_type_test.cpp +15 -12
- data/vendor/datasketches-cpp/fi/test/reverse_purge_hash_map_test.cpp +3 -3
- data/vendor/datasketches-cpp/hll/CMakeLists.txt +3 -0
- data/vendor/datasketches-cpp/hll/include/AuxHashMap-internal.hpp +32 -57
- data/vendor/datasketches-cpp/hll/include/AuxHashMap.hpp +9 -8
- data/vendor/datasketches-cpp/hll/include/CompositeInterpolationXTable.hpp +2 -2
- data/vendor/datasketches-cpp/hll/include/CouponHashSet-internal.hpp +34 -48
- data/vendor/datasketches-cpp/hll/include/CouponHashSet.hpp +10 -10
- data/vendor/datasketches-cpp/hll/include/CouponList-internal.hpp +45 -77
- data/vendor/datasketches-cpp/hll/include/CouponList.hpp +11 -12
- data/vendor/datasketches-cpp/hll/include/CubicInterpolation.hpp +2 -2
- data/vendor/datasketches-cpp/hll/include/HarmonicNumbers.hpp +2 -2
- data/vendor/datasketches-cpp/hll/include/Hll4Array-internal.hpp +15 -14
- data/vendor/datasketches-cpp/hll/include/Hll4Array.hpp +1 -1
- data/vendor/datasketches-cpp/hll/include/Hll6Array-internal.hpp +10 -21
- data/vendor/datasketches-cpp/hll/include/Hll6Array.hpp +2 -3
- data/vendor/datasketches-cpp/hll/include/Hll8Array-internal.hpp +10 -21
- data/vendor/datasketches-cpp/hll/include/Hll8Array.hpp +2 -3
- data/vendor/datasketches-cpp/hll/include/HllArray-internal.hpp +28 -55
- data/vendor/datasketches-cpp/hll/include/HllArray.hpp +8 -8
- data/vendor/datasketches-cpp/hll/include/HllSketch-internal.hpp +9 -11
- data/vendor/datasketches-cpp/hll/include/HllSketchImpl.hpp +2 -1
- data/vendor/datasketches-cpp/hll/include/HllSketchImplFactory.hpp +34 -31
- data/vendor/datasketches-cpp/hll/include/HllUnion-internal.hpp +3 -28
- data/vendor/datasketches-cpp/hll/include/HllUtil.hpp +1 -1
- data/vendor/datasketches-cpp/hll/include/RelativeErrorTables.hpp +1 -1
- data/vendor/datasketches-cpp/hll/include/hll.hpp +6 -34
- data/vendor/datasketches-cpp/hll/test/AuxHashMapTest.cpp +7 -7
- data/vendor/datasketches-cpp/hll/test/CouponHashSetTest.cpp +2 -2
- data/vendor/datasketches-cpp/hll/test/CouponListTest.cpp +3 -3
- data/vendor/datasketches-cpp/hll/test/HllArrayTest.cpp +2 -2
- data/vendor/datasketches-cpp/hll/test/HllSketchTest.cpp +46 -50
- data/vendor/datasketches-cpp/kll/include/kll_quantile_calculator.hpp +1 -1
- data/vendor/datasketches-cpp/kll/include/kll_quantile_calculator_impl.hpp +3 -3
- data/vendor/datasketches-cpp/kll/include/kll_sketch.hpp +10 -3
- data/vendor/datasketches-cpp/kll/include/kll_sketch_impl.hpp +93 -75
- data/vendor/datasketches-cpp/kll/test/kll_sketch_custom_type_test.cpp +11 -10
- data/vendor/datasketches-cpp/kll/test/kll_sketch_test.cpp +45 -42
- data/vendor/datasketches-cpp/python/CMakeLists.txt +2 -0
- data/vendor/datasketches-cpp/python/README.md +6 -3
- data/vendor/datasketches-cpp/python/src/datasketches.cpp +2 -0
- data/vendor/datasketches-cpp/python/src/hll_wrapper.cpp +0 -2
- data/vendor/datasketches-cpp/python/src/kll_wrapper.cpp +3 -1
- data/vendor/datasketches-cpp/python/src/req_wrapper.cpp +246 -0
- data/vendor/datasketches-cpp/python/src/theta_wrapper.cpp +36 -26
- data/vendor/datasketches-cpp/python/tests/hll_test.py +0 -1
- data/vendor/datasketches-cpp/python/tests/kll_test.py +3 -3
- data/vendor/datasketches-cpp/python/tests/req_test.py +126 -0
- data/vendor/datasketches-cpp/python/tests/theta_test.py +28 -3
- data/vendor/datasketches-cpp/req/CMakeLists.txt +60 -0
- data/vendor/datasketches-cpp/{tuple/include/theta_a_not_b_experimental_impl.hpp → req/include/req_common.hpp} +17 -8
- data/vendor/datasketches-cpp/req/include/req_compactor.hpp +137 -0
- data/vendor/datasketches-cpp/req/include/req_compactor_impl.hpp +501 -0
- data/vendor/datasketches-cpp/req/include/req_quantile_calculator.hpp +69 -0
- data/vendor/datasketches-cpp/req/include/req_quantile_calculator_impl.hpp +60 -0
- data/vendor/datasketches-cpp/req/include/req_sketch.hpp +395 -0
- data/vendor/datasketches-cpp/req/include/req_sketch_impl.hpp +810 -0
- data/vendor/datasketches-cpp/req/test/CMakeLists.txt +43 -0
- data/vendor/datasketches-cpp/req/test/req_float_empty_from_java.sk +0 -0
- data/vendor/datasketches-cpp/req/test/req_float_estimation_from_java.sk +0 -0
- data/vendor/datasketches-cpp/req/test/req_float_exact_from_java.sk +0 -0
- data/vendor/datasketches-cpp/req/test/req_float_raw_items_from_java.sk +0 -0
- data/vendor/datasketches-cpp/req/test/req_float_single_item_from_java.sk +0 -0
- data/vendor/datasketches-cpp/req/test/req_sketch_custom_type_test.cpp +128 -0
- data/vendor/datasketches-cpp/req/test/req_sketch_test.cpp +494 -0
- data/vendor/datasketches-cpp/sampling/include/var_opt_sketch.hpp +10 -9
- data/vendor/datasketches-cpp/sampling/include/var_opt_sketch_impl.hpp +82 -70
- data/vendor/datasketches-cpp/sampling/include/var_opt_union.hpp +5 -5
- data/vendor/datasketches-cpp/sampling/include/var_opt_union_impl.hpp +7 -7
- data/vendor/datasketches-cpp/sampling/test/CMakeLists.txt +1 -0
- data/vendor/datasketches-cpp/sampling/test/var_opt_allocation_test.cpp +96 -0
- data/vendor/datasketches-cpp/sampling/test/var_opt_union_test.cpp +0 -31
- data/vendor/datasketches-cpp/setup.py +5 -3
- data/vendor/datasketches-cpp/theta/CMakeLists.txt +30 -3
- data/vendor/datasketches-cpp/{tuple → theta}/include/bounds_on_ratios_in_sampled_sets.hpp +2 -1
- data/vendor/datasketches-cpp/{tuple → theta}/include/bounds_on_ratios_in_theta_sketched_sets.hpp +1 -1
- data/vendor/datasketches-cpp/theta/include/theta_a_not_b.hpp +12 -29
- data/vendor/datasketches-cpp/theta/include/theta_a_not_b_impl.hpp +5 -46
- data/vendor/datasketches-cpp/{tuple → theta}/include/theta_comparators.hpp +0 -0
- data/vendor/datasketches-cpp/{tuple → theta}/include/theta_constants.hpp +2 -0
- data/vendor/datasketches-cpp/{tuple → theta}/include/theta_helpers.hpp +0 -0
- data/vendor/datasketches-cpp/theta/include/theta_intersection.hpp +22 -29
- data/vendor/datasketches-cpp/{tuple → theta}/include/theta_intersection_base.hpp +0 -0
- data/vendor/datasketches-cpp/{tuple → theta}/include/theta_intersection_base_impl.hpp +0 -0
- data/vendor/datasketches-cpp/theta/include/theta_intersection_impl.hpp +8 -90
- data/vendor/datasketches-cpp/{tuple/test/theta_union_experimental_test.cpp → theta/include/theta_jaccard_similarity.hpp} +11 -18
- data/vendor/datasketches-cpp/{tuple/include/jaccard_similarity.hpp → theta/include/theta_jaccard_similarity_base.hpp} +6 -22
- data/vendor/datasketches-cpp/{tuple → theta}/include/theta_set_difference_base.hpp +0 -0
- data/vendor/datasketches-cpp/{tuple → theta}/include/theta_set_difference_base_impl.hpp +5 -0
- data/vendor/datasketches-cpp/theta/include/theta_sketch.hpp +132 -266
- data/vendor/datasketches-cpp/theta/include/theta_sketch_impl.hpp +200 -650
- data/vendor/datasketches-cpp/theta/include/theta_union.hpp +27 -60
- data/vendor/datasketches-cpp/{tuple → theta}/include/theta_union_base.hpp +1 -1
- data/vendor/datasketches-cpp/{tuple → theta}/include/theta_union_base_impl.hpp +5 -0
- data/vendor/datasketches-cpp/theta/include/theta_union_impl.hpp +13 -69
- data/vendor/datasketches-cpp/{tuple → theta}/include/theta_update_sketch_base.hpp +3 -19
- data/vendor/datasketches-cpp/{tuple → theta}/include/theta_update_sketch_base_impl.hpp +6 -1
- data/vendor/datasketches-cpp/theta/test/CMakeLists.txt +1 -0
- data/vendor/datasketches-cpp/{tuple → theta}/test/theta_jaccard_similarity_test.cpp +2 -3
- data/vendor/datasketches-cpp/theta/test/theta_sketch_test.cpp +37 -234
- data/vendor/datasketches-cpp/tuple/CMakeLists.txt +3 -35
- data/vendor/datasketches-cpp/tuple/include/tuple_jaccard_similarity.hpp +38 -0
- data/vendor/datasketches-cpp/tuple/include/tuple_sketch.hpp +28 -13
- data/vendor/datasketches-cpp/tuple/include/tuple_sketch_impl.hpp +6 -6
- data/vendor/datasketches-cpp/tuple/test/CMakeLists.txt +1 -6
- data/vendor/datasketches-cpp/tuple/test/tuple_a_not_b_test.cpp +1 -4
- data/vendor/datasketches-cpp/tuple/test/tuple_intersection_test.cpp +1 -4
- data/vendor/datasketches-cpp/tuple/test/tuple_jaccard_similarity_test.cpp +2 -1
- data/vendor/datasketches-cpp/tuple/test/tuple_sketch_allocation_test.cpp +2 -2
- data/vendor/datasketches-cpp/tuple/test/tuple_union_test.cpp +1 -4
- metadata +43 -34
- data/vendor/datasketches-cpp/tuple/include/theta_a_not_b_experimental.hpp +0 -53
- data/vendor/datasketches-cpp/tuple/include/theta_intersection_experimental.hpp +0 -78
- data/vendor/datasketches-cpp/tuple/include/theta_intersection_experimental_impl.hpp +0 -43
- data/vendor/datasketches-cpp/tuple/include/theta_sketch_experimental.hpp +0 -393
- data/vendor/datasketches-cpp/tuple/include/theta_sketch_experimental_impl.hpp +0 -481
- data/vendor/datasketches-cpp/tuple/include/theta_union_experimental.hpp +0 -88
- data/vendor/datasketches-cpp/tuple/include/theta_union_experimental_impl.hpp +0 -47
- data/vendor/datasketches-cpp/tuple/test/theta_a_not_b_experimental_test.cpp +0 -250
- data/vendor/datasketches-cpp/tuple/test/theta_compact_empty_from_java.sk +0 -0
- data/vendor/datasketches-cpp/tuple/test/theta_compact_estimation_from_java.sk +0 -0
- data/vendor/datasketches-cpp/tuple/test/theta_compact_single_item_from_java.sk +0 -0
- data/vendor/datasketches-cpp/tuple/test/theta_intersection_experimental_test.cpp +0 -224
- data/vendor/datasketches-cpp/tuple/test/theta_sketch_experimental_test.cpp +0 -247
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/*
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* Licensed to the Apache Software Foundation (ASF) under one
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* or more contributor license agreements. See the NOTICE file
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* distributed with this work for additional information
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* regarding copyright ownership. The ASF licenses this file
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* to you under the Apache License, Version 2.0 (the
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* "License"); you may not use this file except in compliance
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* with the License. You may obtain a copy of the License at
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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* Unless required by applicable law or agreed to in writing,
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* software distributed under the License is distributed on an
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* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
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* KIND, either express or implied. See the License for the
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* specific language governing permissions and limitations
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* under the License.
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*/
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#include "req_sketch.hpp"
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#include <pybind11/pybind11.h>
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#include <pybind11/stl.h>
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#include <pybind11/numpy.h>
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#include <sstream>
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#include <vector>
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namespace py = pybind11;
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namespace datasketches {
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namespace python {
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template<typename T>
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req_sketch<T> req_sketch_deserialize(py::bytes sk_bytes) {
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std::string sk_str = sk_bytes; // implicit cast
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return req_sketch<T>::deserialize(sk_str.c_str(), sk_str.length());
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}
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template<typename T>
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py::object req_sketch_serialize(const req_sketch<T>& sk) {
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auto ser_result = sk.serialize();
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return py::bytes((char*)ser_result.data(), ser_result.size());
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}
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// maybe possible to disambiguate the static vs method rank error calls, but
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// this is easier for now
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template<typename T>
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double req_sketch_generic_normalized_rank_error(uint16_t k, bool pmf) {
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return req_sketch<T>::get_normalized_rank_error(k, pmf);
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}
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template<typename T>
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double req_sketch_get_rank(const req_sketch<T>& sk,
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const T& item,
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bool inclusive) {
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if (inclusive)
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return sk.template get_rank<true>(item);
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else
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return sk.template get_rank<false>(item);
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}
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template<typename T>
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T req_sketch_get_quantile(const req_sketch<T>& sk,
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double rank,
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bool inclusive) {
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if (inclusive)
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return T(sk.template get_quantile<true>(rank));
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else
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return T(sk.template get_quantile<false>(rank));
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}
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template<typename T>
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py::list req_sketch_get_quantiles(const req_sketch<T>& sk,
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std::vector<double>& fractions,
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bool inclusive) {
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size_t n_quantiles = fractions.size();
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auto result = inclusive
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? sk.template get_quantiles<true>(&fractions[0], n_quantiles)
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: sk.template get_quantiles<false>(&fractions[0], n_quantiles);
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// returning as std::vector<> would copy values to a list anyway
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py::list list(n_quantiles);
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for (size_t i = 0; i < n_quantiles; ++i) {
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list[i] = result[i];
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}
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return list;
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}
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template<typename T>
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py::list req_sketch_get_pmf(const req_sketch<T>& sk,
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std::vector<T>& split_points,
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bool inclusive) {
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size_t n_points = split_points.size();
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auto result = inclusive
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? sk.template get_PMF<true>(&split_points[0], n_points)
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: sk.template get_PMF<false>(&split_points[0], n_points);
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py::list list(n_points + 1);
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for (size_t i = 0; i <= n_points; ++i) {
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list[i] = result[i];
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}
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return list;
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}
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template<typename T>
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py::list req_sketch_get_cdf(const req_sketch<T>& sk,
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std::vector<T>& split_points,
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bool inclusive) {
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size_t n_points = split_points.size();
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auto result = inclusive
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? sk.template get_CDF<true>(&split_points[0], n_points)
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: sk.template get_CDF<false>(&split_points[0], n_points);
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py::list list(n_points + 1);
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for (size_t i = 0; i <= n_points; ++i) {
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list[i] = result[i];
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}
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return list;
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}
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template<typename T>
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void req_sketch_update(req_sketch<T>& sk, py::array_t<T, py::array::c_style | py::array::forcecast> items) {
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if (items.ndim() != 1) {
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throw std::invalid_argument("input data must have only one dimension. Found: "
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+ std::to_string(items.ndim()));
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}
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auto data = items.template unchecked<1>();
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for (uint32_t i = 0; i < data.size(); ++i) {
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sk.update(data(i));
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}
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}
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}
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}
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namespace dspy = datasketches::python;
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template<typename T>
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void bind_req_sketch(py::module &m, const char* name) {
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using namespace datasketches;
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py::class_<req_sketch<T>>(m, name)
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.def(py::init<uint16_t, bool>(), py::arg("k")=12, py::arg("is_hra")=true)
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.def(py::init<const req_sketch<T>&>())
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.def("update", (void (req_sketch<T>::*)(const T&)) &req_sketch<T>::update, py::arg("item"),
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"Updates the sketch with the given value")
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.def("update", &dspy::req_sketch_update<T>, py::arg("array"),
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"Updates the sketch with the values in the given array")
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.def("merge", (void (req_sketch<T>::*)(const req_sketch<T>&)) &req_sketch<T>::merge, py::arg("sketch"),
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"Merges the provided sketch into the this one")
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.def("__str__", &req_sketch<T>::to_string, py::arg("print_levels")=false, py::arg("print_items")=false,
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"Produces a string summary of the sketch")
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.def("to_string", &req_sketch<T>::to_string, py::arg("print_levels")=false, py::arg("print_items")=false,
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"Produces a string summary of the sketch")
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.def("is_hra", &req_sketch<T>::is_HRA,
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"Returns True if the sketch is in High Rank Accuracy mode, otherwise False")
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.def("is_empty", &req_sketch<T>::is_empty,
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"Returns True if the sketch is empty, otherwise False")
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.def("get_k", &req_sketch<T>::get_k,
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"Returns the configured parameter k")
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.def("get_n", &req_sketch<T>::get_n,
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"Returns the length of the input stream")
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.def("get_num_retained", &req_sketch<T>::get_num_retained,
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"Returns the number of retained items (samples) in the sketch")
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.def("is_estimation_mode", &req_sketch<T>::is_estimation_mode,
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"Returns True if the sketch is in estimation mode, otherwise False")
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.def("get_min_value", &req_sketch<T>::get_min_value,
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"Returns the minimum value from the stream. If empty, req_floats_sketch returns nan; req_ints_sketch throws a RuntimeError")
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.def("get_max_value", &req_sketch<T>::get_max_value,
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"Returns the maximum value from the stream. If empty, req_floats_sketch returns nan; req_ints_sketch throws a RuntimeError")
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.def("get_quantile", &dspy::req_sketch_get_quantile<T>, py::arg("rank"), py::arg("inclusive")=false,
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"Returns an approximation to the value of the data item "
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"that would be preceded by the given fraction of a hypothetical sorted "
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"version of the input stream so far.\n"
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"Note that this method has a fairly large overhead (microseconds instead of nanoseconds) "
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"so it should not be called multiple times to get different quantiles from the same "
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"sketch. Instead use get_quantiles(), which pays the overhead only once.\n"
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"For req_floats_sketch: if the sketch is empty this returns nan. "
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"For req_ints_sketch: if the sketch is empty this throws a RuntimeError.")
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.def("get_quantiles", &dspy::req_sketch_get_quantiles<T>, py::arg("ranks"), py::arg("inclusive")=false,
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"This is a more efficient multiple-query version of get_quantile().\n"
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"This returns an array that could have been generated by using get_quantile() for each "
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"fractional rank separately, but would be very inefficient. "
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"This method incurs the internal set-up overhead once and obtains multiple quantile values in "
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"a single query. It is strongly recommend that this method be used instead of multiple calls "
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"to get_quantile().\n"
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"If the sketch is empty this returns an empty vector.")
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.def("get_rank", &dspy::req_sketch_get_rank<T>, py::arg("item"), py::arg("inclusive")=false,
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"Returns an approximation to the normalized (fractional) rank of the given value from 0 to 1, inclusive.\n"
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"The resulting approximation has a probabilistic guarantee that can be obtained from the "
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"get_normalized_rank_error(False) function.\n"
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"If the sketch is empty this returns nan.")
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.def("get_pmf", &dspy::req_sketch_get_pmf<T>, py::arg("split_points"), py::arg("inclusive")=false,
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"Returns an approximation to the Probability Mass Function (PMF) of the input stream "
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"given a set of split points (values).\n"
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"The resulting approximations have a probabilistic guarantee that can be obtained from the "
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"get_normalized_rank_error(True) function.\n"
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"If the sketch is empty this returns an empty vector.\n"
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"split_points is an array of m unique, monotonically increasing float values "
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"that divide the real number line into m+1 consecutive disjoint intervals.\n"
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"The definition of an 'interval' is inclusive of the left split point (or minimum value) and "
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"exclusive of the right split point, with the exception that the last interval will include "
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"the maximum value.\n"
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"It is not necessary to include either the min or max values in these split points.")
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.def("get_cdf", &dspy::req_sketch_get_cdf<T>, py::arg("split_points"), py::arg("inclusive")=false,
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"Returns an approximation to the Cumulative Distribution Function (CDF), which is the "
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"cumulative analog of the PMF, of the input stream given a set of split points (values).\n"
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+
"The resulting approximations have a probabilistic guarantee that can be obtained from the "
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"get_normalized_rank_error(True) function.\n"
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"If the sketch is empty this returns an empty vector.\n"
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"split_points is an array of m unique, monotonically increasing float values "
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"that divide the real number line into m+1 consecutive disjoint intervals.\n"
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"The definition of an 'interval' is inclusive of the left split point (or minimum value) and "
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"exclusive of the right split point, with the exception that the last interval will include "
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"the maximum value.\n"
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"It is not necessary to include either the min or max values in these split points.")
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+
.def("get_rank_lower_bound", &req_sketch<T>::get_rank_lower_bound, py::arg("rank"), py::arg("num_std_dev"),
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+
"Returns an approximate lower bound on the given normalized rank.\n"
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"Normalized rank must be a value between 0.0 and 1.0 (inclusive); "
|
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+
"the number of standard deviations must be 1, 2, or 3.")
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+
.def("get_rank_upper_bound", &req_sketch<T>::get_rank_upper_bound, py::arg("rank"), py::arg("num_std_dev"),
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+
"Returns an approximate upper bound on the given normalized rank.\n"
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"Normalized rank must be a value between 0.0 and 1.0 (inclusive); "
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+
"the number of standard deviations must be 1, 2, or 3.")
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.def_static("get_RSE", &req_sketch<T>::get_RSE,
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py::arg("k"), py::arg("rank"), py::arg("is_hra"), py::arg("n"),
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"Returns an a priori estimate of relative standard error (RSE, expressed as a number in [0,1]). "
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"Derived from Lemma 12 in http://arxiv.org/abs/2004.01668v2, but the constant factors have been "
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+
"modified based on empirical measurements, for a given value of parameter k.\n"
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+
"Normalized rank must be a value between 0.0 and 1.0 (inclusive). If is_hra is True, uses high "
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+
"rank accuracy mode, else low rank accuracy. N is an estimate of the total number of points "
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+
"provided to the sketch.")
|
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.def("serialize", &dspy::req_sketch_serialize<T>, "Serializes the sketch into a bytes object")
|
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+
.def_static("deserialize", &dspy::req_sketch_deserialize<T>, "Deserializes the sketch from a bytes object")
|
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+
;
|
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+
}
|
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+
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+
void init_req(py::module &m) {
|
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+
bind_req_sketch<int>(m, "req_ints_sketch");
|
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+
bind_req_sketch<float>(m, "req_floats_sketch");
|
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+
}
|
@@ -19,11 +19,13 @@
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#include <sstream>
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#include <pybind11/pybind11.h>
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+
#include <pybind11/stl.h>
|
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#include "theta_sketch.hpp"
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#include "theta_union.hpp"
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#include "theta_intersection.hpp"
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#include "theta_a_not_b.hpp"
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+
#include "theta_jaccard_similarity.hpp"
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#include "common_defs.hpp"
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@@ -48,23 +50,13 @@ theta_union theta_union_factory(uint8_t lg_k, double p, uint64_t seed) {
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return builder.build();
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}
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-
theta_sketch* theta_sketch_deserialize(py::bytes skBytes, uint64_t seed) {
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-
std::string skStr = skBytes; // implicit cast
|
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-
return theta_sketch::deserialize(skStr.c_str(), skStr.length(), seed).release();
|
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-
}
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-
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-
py::object theta_sketch_serialize(const theta_sketch& sk) {
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-
auto serResult = sk.serialize();
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-
return py::bytes((char*)serResult.data(), serResult.size());
|
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-
}
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-
|
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uint16_t theta_sketch_get_seed_hash(const theta_sketch& sk) {
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return sk.get_seed_hash();
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}
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-
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-
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-
return
|
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+
py::object compact_theta_sketch_serialize(const compact_theta_sketch& sk) {
|
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+
auto serResult = sk.serialize();
|
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+
return py::bytes((char*)serResult.data(), serResult.size());
|
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}
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compact_theta_sketch compact_theta_sketch_deserialize(py::bytes skBytes, uint64_t seed) {
|
@@ -72,6 +64,10 @@ compact_theta_sketch compact_theta_sketch_deserialize(py::bytes skBytes, uint64_
|
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return compact_theta_sketch::deserialize(skStr.c_str(), skStr.length(), seed);
|
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|
}
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+
py::list theta_jaccard_sim_computation(const theta_sketch& sketch_a, const theta_sketch& sketch_b) {
|
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+
return py::cast(theta_jaccard_similarity::jaccard(sketch_a, sketch_b));
|
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+
}
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+
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}
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}
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@@ -81,16 +77,12 @@ void init_theta(py::module &m) {
|
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using namespace datasketches;
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py::class_<theta_sketch>(m, "theta_sketch")
|
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|
-
.def("serialize", &dspy::theta_sketch_serialize,
|
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-
"Serializes the sketch into a bytes object")
|
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|
-
.def_static("deserialize", &dspy::theta_sketch_deserialize, py::arg("bytes"), py::arg("seed")=DEFAULT_SEED,
|
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|
-
"Reads a bytes object and returns the corresponding cpc_sketch")
|
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|
.def("__str__", &theta_sketch::to_string, py::arg("print_items")=false,
|
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|
"Produces a string summary of the sketch")
|
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|
.def("to_string", &theta_sketch::to_string, py::arg("print_items")=false,
|
91
83
|
"Produces a string summary of the sketch")
|
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|
.def("is_empty", &theta_sketch::is_empty,
|
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|
-
"Returns True if the sketch is empty, otherwise
|
85
|
+
"Returns True if the sketch is empty, otherwise False")
|
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86
|
.def("get_estimate", &theta_sketch::get_estimate,
|
95
87
|
"Estimate of the distinct count of the input stream")
|
96
88
|
.def("get_upper_bound", &theta_sketch::get_upper_bound, py::arg("num_std_devs"),
|
@@ -121,23 +113,22 @@ void init_theta(py::module &m) {
|
|
121
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|
"Updates the sketch with the given string")
|
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|
.def("compact", &update_theta_sketch::compact, py::arg("ordered")=true,
|
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115
|
"Returns a compacted form of the sketch, optionally sorting it")
|
124
|
-
.def_static("deserialize", &dspy::update_theta_sketch_deserialize,
|
125
|
-
py::arg("bytes"), py::arg("seed")=DEFAULT_SEED,
|
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|
-
"Reads a bytes object and returns the corresponding update_theta_sketch")
|
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|
;
|
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|
|
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|
py::class_<compact_theta_sketch, theta_sketch>(m, "compact_theta_sketch")
|
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|
.def(py::init<const compact_theta_sketch&>())
|
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|
.def(py::init<const theta_sketch&, bool>())
|
121
|
+
.def("serialize", &dspy::compact_theta_sketch_serialize,
|
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|
+
"Serializes the sketch into a bytes object")
|
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123
|
.def_static("deserialize", &dspy::compact_theta_sketch_deserialize,
|
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|
py::arg("bytes"), py::arg("seed")=DEFAULT_SEED,
|
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|
-
"Reads a bytes object and returns the corresponding
|
125
|
+
"Reads a bytes object and returns the corresponding compact_theta_sketch")
|
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|
;
|
136
127
|
|
137
128
|
py::class_<theta_union>(m, "theta_union")
|
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|
.def(py::init(&dspy::theta_union_factory),
|
139
130
|
py::arg("lg_k")=update_theta_sketch::builder::DEFAULT_LG_K, py::arg("p")=1.0, py::arg("seed")=DEFAULT_SEED)
|
140
|
-
.def("update", &theta_union::update
|
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|
+
.def("update", &theta_union::update<const theta_sketch&>, py::arg("sketch"),
|
141
132
|
"Updates the union with the given sketch")
|
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133
|
.def("get_result", &theta_union::get_result, py::arg("ordered")=true,
|
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134
|
"Returns the sketch corresponding to the union result")
|
@@ -146,17 +137,36 @@ void init_theta(py::module &m) {
|
|
146
137
|
py::class_<theta_intersection>(m, "theta_intersection")
|
147
138
|
.def(py::init<uint64_t>(), py::arg("seed")=DEFAULT_SEED)
|
148
139
|
.def(py::init<const theta_intersection&>())
|
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|
-
.def("update", &theta_intersection::update
|
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|
+
.def("update", &theta_intersection::update<const theta_sketch&>, py::arg("sketch"),
|
150
141
|
"Intersections the provided sketch with the current intersection state")
|
151
142
|
.def("get_result", &theta_intersection::get_result, py::arg("ordered")=true,
|
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143
|
"Returns the sketch corresponding to the intersection result")
|
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|
.def("has_result", &theta_intersection::has_result,
|
154
|
-
"Returns True if the intersection has a valid result,
|
145
|
+
"Returns True if the intersection has a valid result, otherwise False")
|
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|
;
|
156
147
|
|
157
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|
py::class_<theta_a_not_b>(m, "theta_a_not_b")
|
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149
|
.def(py::init<uint64_t>(), py::arg("seed")=DEFAULT_SEED)
|
159
|
-
.def("compute", &theta_a_not_b::compute
|
150
|
+
.def("compute", &theta_a_not_b::compute<const theta_sketch&, const theta_sketch&>, py::arg("a"), py::arg("b"), py::arg("ordered")=true,
|
160
151
|
"Returns a sketch with the reuslt of appying the A-not-B operation on the given inputs")
|
161
152
|
;
|
153
|
+
|
154
|
+
py::class_<theta_jaccard_similarity>(m, "theta_jaccard_similarity")
|
155
|
+
.def_static("jaccard", &dspy::theta_jaccard_sim_computation,
|
156
|
+
py::arg("sketch_a"), py::arg("sketch_b"),
|
157
|
+
"Returns a list with {lower_bound, estimate, upper_bound} of the Jaccard similarity between sketches")
|
158
|
+
.def_static("exactly_equal", &theta_jaccard_similarity::exactly_equal<const theta_sketch&, const theta_sketch&>,
|
159
|
+
py::arg("sketch_a"), py::arg("sketch_b"),
|
160
|
+
"Returns True if sketch_a and sketch_b are equivalent, otherwise False")
|
161
|
+
.def_static("similarity_test", &theta_jaccard_similarity::similarity_test<const theta_sketch&, const theta_sketch&>,
|
162
|
+
py::arg("actual"), py::arg("expected"), py::arg("threshold"),
|
163
|
+
"Tests similarity of an actual sketch against an expected sketch. Computers the lower bound of the Jaccard "
|
164
|
+
"index J_{LB} of the actual and expected sketches. If J_{LB} >= threshold, then the sketches are considered "
|
165
|
+
"to be similar sith a confidence of 97.7% and returns True, otherwise False.")
|
166
|
+
.def_static("dissimilarity_test", &theta_jaccard_similarity::dissimilarity_test<const theta_sketch&, const theta_sketch&>,
|
167
|
+
py::arg("actual"), py::arg("expected"), py::arg("threshold"),
|
168
|
+
"Tests dissimilarity of an actual sketch against an expected sketch. Computers the lower bound of the Jaccard "
|
169
|
+
"index J_{UB} of the actual and expected sketches. If J_{UB} <= threshold, then the sketches are considered "
|
170
|
+
"to be dissimilar sith a confidence of 97.7% and returns True, otherwise False.")
|
171
|
+
;
|
162
172
|
}
|
@@ -113,7 +113,6 @@ class HllTest(unittest.TestCase):
|
|
113
113
|
self.assertGreaterEqual(union.get_upper_bound(1), union.get_estimate())
|
114
114
|
|
115
115
|
self.assertEqual(union.lg_config_k, k)
|
116
|
-
self.assertFalse(union.is_compact())
|
117
116
|
self.assertFalse(union.is_empty())
|
118
117
|
|
119
118
|
sk = union.get_result()
|
@@ -16,9 +16,7 @@
|
|
16
16
|
# under the License.
|
17
17
|
|
18
18
|
import unittest
|
19
|
-
from datasketches import
|
20
|
-
vector_of_kll_ints_sketches,
|
21
|
-
vector_of_kll_floats_sketches)
|
19
|
+
from datasketches import kll_ints_sketch, kll_floats_sketch
|
22
20
|
import numpy as np
|
23
21
|
|
24
22
|
class KllTest(unittest.TestCase):
|
@@ -59,6 +57,7 @@ class KllTest(unittest.TestCase):
|
|
59
57
|
self.assertFalse(kll.is_empty())
|
60
58
|
self.assertTrue(kll.is_estimation_mode())
|
61
59
|
self.assertEqual(kll.get_n(), n)
|
60
|
+
self.assertEqual(kll.get_k(), k)
|
62
61
|
self.assertLess(kll.get_num_retained(), n)
|
63
62
|
|
64
63
|
# merging itself will double the number of items the sketch has seen
|
@@ -86,6 +85,7 @@ class KllTest(unittest.TestCase):
|
|
86
85
|
self.assertEqual(kll.get_n(), n)
|
87
86
|
self.assertFalse(kll.is_empty())
|
88
87
|
self.assertFalse(kll.is_estimation_mode()) # n < k
|
88
|
+
self.assertEqual(kll.get_k(), k)
|
89
89
|
|
90
90
|
pmf = kll.get_pmf([round(n/2)])
|
91
91
|
self.assertIsNotNone(pmf)
|
@@ -0,0 +1,126 @@
|
|
1
|
+
# Licensed to the Apache Software Foundation (ASF) under one
|
2
|
+
# or more contributor license agreements. See the NOTICE file
|
3
|
+
# distributed with this work for additional information
|
4
|
+
# regarding copyright ownership. The ASF licenses this file
|
5
|
+
# to you under the Apache License, Version 2.0 (the
|
6
|
+
# "License"); you may not use this file except in compliance
|
7
|
+
# with the License. You may obtain a copy of the License at
|
8
|
+
#
|
9
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
10
|
+
#
|
11
|
+
# Unless required by applicable law or agreed to in writing,
|
12
|
+
# software distributed under the License is distributed on an
|
13
|
+
# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
|
14
|
+
# KIND, either express or implied. See the License for the
|
15
|
+
# specific language governing permissions and limitations
|
16
|
+
# under the License.
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import unittest
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from datasketches import req_ints_sketch, req_floats_sketch
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import numpy as np
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class reqTest(unittest.TestCase):
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def test_req_example(self):
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k = 12
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n = 2 ** 20
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# create a sketch and inject ~1 million N(0,1) points as an array and as a single item
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req = req_floats_sketch(k, True) # high rank accuracy
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req.update(np.random.normal(size=n-1))
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req.update(0.0)
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# 0 should be near the median
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self.assertAlmostEqual(0.5, req.get_rank(0.0), delta=0.03)
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# the median should be near 0
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self.assertAlmostEqual(0.0, req.get_quantile(0.5), delta=0.03)
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# we also track the min/max independently from the rest of the data
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# which lets us know the full observed data range
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self.assertLessEqual(req.get_min_value(), req.get_quantile(0.01))
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self.assertLessEqual(0.0, req.get_rank(req.get_min_value()))
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self.assertGreaterEqual(req.get_max_value(), req.get_quantile(0.99))
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self.assertGreaterEqual(1.0, req.get_rank(req.get_max_value()))
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# we can also extract a list of values at a time,
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# here the values should give us something close to [-2, -1, 0, 1, 2].
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# then get the CDF, which will return something close to
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# the original values used in get_quantiles()
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# finally, can check the normalized rank error bound
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pts = req.get_quantiles([0.0228, 0.1587, 0.5, 0.8413, 0.9772])
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cdf = req.get_cdf(pts) # include 1.0 at end to account for all probability mass
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self.assertEqual(len(cdf), len(pts)+1)
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# For relative error quantiles, the error depends on the actual rank
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# so we need to use that to detemrine the bounds
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est = req.get_rank(0.999, True)
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lb = req.get_rank_lower_bound(est, 1)
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ub = req.get_rank_upper_bound(est, 1)
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self.assertLessEqual(lb, est)
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self.assertLessEqual(est, ub)
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# and a few basic queries about the sketch
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self.assertFalse(req.is_empty())
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self.assertTrue(req.is_estimation_mode())
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self.assertEqual(req.get_n(), n)
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self.assertLess(req.get_num_retained(), n)
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self.assertEqual(req.get_k(), k)
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# merging itself will double the number of items the sketch has seen
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req.merge(req)
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self.assertEqual(req.get_n(), 2*n)
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# we can then serialize and reconstruct the sketch
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req_bytes = req.serialize()
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new_req = req.deserialize(req_bytes)
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self.assertEqual(req.get_num_retained(), new_req.get_num_retained())
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self.assertEqual(req.get_min_value(), new_req.get_min_value())
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self.assertEqual(req.get_max_value(), new_req.get_max_value())
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self.assertEqual(req.get_quantile(0.7), new_req.get_quantile(0.7))
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self.assertEqual(req.get_rank(0.0), new_req.get_rank(0.0))
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def test_req_ints_sketch(self):
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k = 100
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n = 10
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req = req_ints_sketch(k)
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for i in range(0, n):
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req.update(i)
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self.assertEqual(req.get_min_value(), 0)
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self.assertEqual(req.get_max_value(), n-1)
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self.assertEqual(req.get_n(), n)
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self.assertFalse(req.is_empty())
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self.assertFalse(req.is_estimation_mode()) # n < k
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self.assertEqual(req.get_k(), k)
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pmf = req.get_pmf([round(n/2)])
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self.assertIsNotNone(pmf)
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self.assertEqual(len(pmf), 2)
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cdf = req.get_cdf([round(n/2)])
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self.assertIsNotNone(cdf)
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self.assertEqual(len(cdf), 2)
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self.assertEqual(req.get_quantile(0.5), round(n/2))
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quants = req.get_quantiles([0.25, 0.5, 0.75])
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self.assertIsNotNone(quants)
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self.assertEqual(len(quants), 3)
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self.assertEqual(req.get_rank(round(n/2)), 0.5)
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# merge self
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req.merge(req)
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self.assertEqual(req.get_n(), 2 * n)
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sk_bytes = req.serialize()
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self.assertTrue(isinstance(req_ints_sketch.deserialize(sk_bytes), req_ints_sketch))
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def test_req_floats_sketch(self):
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# already tested ints and it's templatized, so just make sure it instantiates properly
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k = 75
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req = req_floats_sketch(k, False) # low rank accuracy
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self.assertTrue(req.is_empty())
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self.assertFalse(req.is_hra())
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if __name__ == '__main__':
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unittest.main()
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