dagnabit 2.2.4 → 2.2.6

data/.gitignore

@@ -4,3 +4,4 @@ coverage
 rdoc
 pkg
 *.log
+.bundle

data/Gemfile

@@ -0,0 +1,15 @@
+# A sample Gemfile
+source :gemcutter
+
+gem 'activerecord', '~> 2.3.5'
+
+group :development do
+  gem 'jeweler'
+  gem 'mocha', '0.9.8'
+  gem 'pg'
+  gem 'shoulda', '2.10.2'
+  gem 'sqlite3-ruby'
+  gem 'redgreen'
+  gem 'rcov'
+  gem 'ZenTest'
+end

data/Gemfile.lock

@@ -0,0 +1,38 @@
+GEM
+  remote: http://rubygems.org/
+  specs:
+    ZenTest (4.4.0)
+    activerecord (2.3.9)
+      activesupport (= 2.3.9)
+    activesupport (2.3.9)
+    gemcutter (0.6.1)
+    git (1.2.5)
+    jeweler (1.4.0)
+      gemcutter (>= 0.1.0)
+      git (>= 1.2.5)
+      rubyforge (>= 2.0.0)
+    json_pure (1.4.6)
+    mocha (0.9.8)
+      rake
+    pg (0.9.0)
+    rake (0.8.7)
+    rcov (0.9.9)
+    redgreen (1.2.2)
+    rubyforge (2.0.4)
+      json_pure (>= 1.1.7)
+    shoulda (2.10.2)
+    sqlite3-ruby (1.3.1)
+
+PLATFORMS
+  ruby
+
+DEPENDENCIES
+  ZenTest
+  activerecord (~> 2.3.5)
+  jeweler
+  mocha (= 0.9.8)
+  pg
+  rcov
+  redgreen
+  shoulda (= 2.10.2)
+  sqlite3-ruby

data/History.txt

@@ -1,3 +1,17 @@
+== 2.2.6 2010-01-01
+
+=== Bugfixes
+
+* Fixed version requirements.
+
+== 2.2.5 2010-10-01
+
+=== Minor changes
+
+* Ported development code to Bundler 1.0.
+* Removed usage of Object#returning, which was deprecated in ActiveSupport
+  2.3.9.
+
 == 2.2.4 2010-03-15
 
 === Bugfixes

data/README.rdoc

@@ -1,3 +1,13 @@
+= Read this first
+
+dagnabit is shutting down.  Errors will be fixed, but no new features will be
+added.
+
+If you need fast reachability queries in a Ruby application that uses an SQL
+database, consider using a database that supports recursive common table
+expressions (e.g. PostgreSQL) and Sequel, which has a Ruby interface for
+constructing recursive CTEs.
+
 = dagnabit
 
 dagnabit is (yet another) ActiveRecord plugin for directed acyclic graphs.  It
@@ -19,6 +29,14 @@ biospecimen heritage.
 dagnabit was developed at the Northwestern University Biomedical Informatics
 Center <http://www.nucats.northwestern.edu/centers/nubic/index.html>.
 
+dagnabit is hosted at Gitorious and Github:
+
+http://gitorious.org/dagnabit/dagnabit
+http://github.com/yipdw/dagnabit
+
+The Gitorious repository is always updated before the Github repository, and
+should be considered canonical.
+
 == Related work
 
 This plugin was inspired by Matthew Leventi's acts-as-dag plugin

data/Rakefile

@@ -1,28 +1,18 @@
-require 'rubygems'
 require 'rake'
-
-gem 'net-ssh', '>= 1.99.1'
-require 'net/ssh'
-require 'net/scp'
 require 'yaml'
+require 'bundler'
+Bundler.setup
 
-begin
-  require 'jeweler'
-  Jeweler::Tasks.new do |gem|
-    gem.name = "dagnabit"
-    gem.summary = %Q{Directed acyclic graph plugin for ActiveRecord}
-    gem.email = "yipdw@northwestern.edu"
-    gem.homepage = "http://gitorious.org/dagnabit/dagnabit"
-    gem.authors = ["David Yip"]
-    gem.add_dependency 'activerecord', '>= 2.1.0'
-    gem.add_dependency 'activesupport', '>= 2.3.2'
-    gem.add_development_dependency 'mocha', '= 0.9.8'
-    gem.add_development_dependency 'shoulda', '= 2.10.2'
+require 'jeweler'
 
-    # gem is a Gem::Specification... see http://www.rubygems.org/read/chapter/20 for additional settings
-  end
-rescue LoadError
-  puts "Jeweler not available. Install it with: sudo gem install jeweler"
+Jeweler::Tasks.new do |gem|
+  gem.name = 'dagnabit'
+  gem.summary = %Q{Directed acyclic graph plugin for ActiveRecord}
+  gem.email = 'yipdw@northwestern.edu'
+  gem.homepage = 'http://gitorious.org/dagnabit/dagnabit'
+  gem.authors = ['David Yip']
+
+  gem.add_bundler_dependencies
 end
 
 task :test => [:test_sqlite3, :test_postgresql]
@@ -36,21 +26,14 @@ require 'rake/testtask'
   end
 end
 
-begin
-  require 'rcov/rcovtask'
-  Rcov::RcovTask.new do |test|
-    test.libs << 'test' << 'test/connections/native_sqlite3'
-    test.pattern = 'test/dagnabit/**/test_*.rb'
-    test.verbose = true
-    test.rcov_opts << '--exclude gems/*'
-  end
-rescue LoadError
-  task :rcov do
-    abort "RCov is not available. In order to run rcov, you must: sudo gem install spicycode-rcov"
-  end
+require 'rcov/rcovtask'
+Rcov::RcovTask.new do |test|
+  test.libs << 'test' << 'test/connections/native_sqlite3'
+  test.pattern = 'test/dagnabit/**/test_*.rb'
+  test.verbose = true
+  test.rcov_opts << '--exclude gems/*,.bundle/environment.rb'
 end
 
-
 task :default => :test
 
 require 'rake/rdoctask'

data/VERSION.yml

@@ -1,5 +1,5 @@
 --- 
 :major: 2
-:build: 
 :minor: 2
-:patch: 4
+:build: 
+:patch: 6

data/bin/dagnabit-test

@@ -4,25 +4,18 @@
 # Launches an irb session with an in-memory SQLite3 database and Node and Link
 # ActiveRecord models.
 #
-
+#
 require 'rubygems'
-require 'active_record'
-
-src = File.dirname(__FILE__) + '/../lib/dagnabit.rb'
-if File.exists?(src)
-  require src
-else
-  require 'dagnabit'
-end
+require 'bundler'
+Bundler.setup
 
+require 'active_record'
+require 'sqlite3'
 require 'irb'
 
-begin
-  require 'sqlite3'
-rescue LoadError
-  gem 'sqlite3-ruby'
-  require 'sqlite3'
-end
+$LOAD_PATH.unshift(File.join(File.dirname(__FILE__), %w(.. lib)))
+
+require 'dagnabit'
 
 ActiveRecord::Base.logger = Logger.new("#{File.basename(__FILE__)}.log")
 ActiveRecord::Base.establish_connection(:adapter => 'sqlite3', :database => ':memory:')

data/dagnabit.gemspec

@@ -5,11 +5,11 @@
 
 Gem::Specification.new do |s|
   s.name = %q{dagnabit}
-  s.version = "2.2.4"
+  s.version = "2.2.6"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.authors = ["David Yip"]
-  s.date = %q{2010-03-15}
+  s.date = %q{2010-10-01}
   s.default_executable = %q{dagnabit-test}
   s.email = %q{yipdw@northwestern.edu}
   s.executables = ["dagnabit-test"]
@@ -21,6 +21,8 @@ Gem::Specification.new do |s|
     ".autotest",
      ".document",
      ".gitignore",
+     "Gemfile",
+     "Gemfile.lock",
      "History.txt",
      "LICENSE",
      "README.rdoc",
@@ -73,7 +75,7 @@ Gem::Specification.new do |s|
   s.homepage = %q{http://gitorious.org/dagnabit/dagnabit}
   s.rdoc_options = ["--charset=UTF-8"]
   s.require_paths = ["lib"]
-  s.rubygems_version = %q{1.3.6}
+  s.rubygems_version = %q{1.3.7}
   s.summary = %q{Directed acyclic graph plugin for ActiveRecord}
   s.test_files = [
     "test/connections/native_postgresql/connection.rb",
@@ -104,22 +106,37 @@ Gem::Specification.new do |s|
     current_version = Gem::Specification::CURRENT_SPECIFICATION_VERSION
     s.specification_version = 3
 
-    if Gem::Version.new(Gem::RubyGemsVersion) >= Gem::Version.new('1.2.0') then
-      s.add_runtime_dependency(%q<activerecord>, [">= 2.1.0"])
-      s.add_runtime_dependency(%q<activesupport>, [">= 2.3.2"])
+    if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
+      s.add_runtime_dependency(%q<activerecord>, ["~> 2.3.5"])
+      s.add_development_dependency(%q<jeweler>, [">= 0"])
       s.add_development_dependency(%q<mocha>, ["= 0.9.8"])
+      s.add_development_dependency(%q<pg>, [">= 0"])
       s.add_development_dependency(%q<shoulda>, ["= 2.10.2"])
+      s.add_development_dependency(%q<sqlite3-ruby>, [">= 0"])
+      s.add_development_dependency(%q<redgreen>, [">= 0"])
+      s.add_development_dependency(%q<rcov>, [">= 0"])
+      s.add_development_dependency(%q<ZenTest>, [">= 0"])
     else
-      s.add_dependency(%q<activerecord>, [">= 2.1.0"])
-      s.add_dependency(%q<activesupport>, [">= 2.3.2"])
+      s.add_dependency(%q<activerecord>, ["~> 2.3.5"])
+      s.add_dependency(%q<jeweler>, [">= 0"])
       s.add_dependency(%q<mocha>, ["= 0.9.8"])
+      s.add_dependency(%q<pg>, [">= 0"])
       s.add_dependency(%q<shoulda>, ["= 2.10.2"])
+      s.add_dependency(%q<sqlite3-ruby>, [">= 0"])
+      s.add_dependency(%q<redgreen>, [">= 0"])
+      s.add_dependency(%q<rcov>, [">= 0"])
+      s.add_dependency(%q<ZenTest>, [">= 0"])
     end
   else
-    s.add_dependency(%q<activerecord>, [">= 2.1.0"])
-    s.add_dependency(%q<activesupport>, [">= 2.3.2"])
+    s.add_dependency(%q<activerecord>, ["~> 2.3.5"])
+    s.add_dependency(%q<jeweler>, [">= 0"])
     s.add_dependency(%q<mocha>, ["= 0.9.8"])
+    s.add_dependency(%q<pg>, [">= 0"])
     s.add_dependency(%q<shoulda>, ["= 2.10.2"])
+    s.add_dependency(%q<sqlite3-ruby>, [">= 0"])
+    s.add_dependency(%q<redgreen>, [">= 0"])
+    s.add_dependency(%q<rcov>, [">= 0"])
+    s.add_dependency(%q<ZenTest>, [">= 0"])
   end
 end
 

data/lib/dagnabit/node/class_methods.rb

@@ -48,7 +48,7 @@ module Dagnabit
       # </pre>
       #
       def subgraph_from(*roots)
-        returning(OpenStruct.new) do |g|
+        OpenStruct.new.tap do |g|
           g.nodes = all_nodes_of(roots)
           g.edges = direct_edges_of(roots)
         end

data/test/helper.rb

@@ -1,4 +1,3 @@
-require 'rubygems'
 require 'test/unit'
 require 'shoulda'
 require 'mocha'

metadata

@@ -1,12 +1,13 @@
 --- !ruby/object:Gem::Specification 
 name: dagnabit
 version: !ruby/object:Gem::Version 
+  hash: 11
   prerelease: false
   segments: 
   - 2
   - 2
-  - 4
-  version: 2.2.4
+  - 6
+  version: 2.2.6
 platform: ruby
 authors: 
 - David Yip
@@ -14,65 +15,141 @@ autorequire:
 bindir: bin
 cert_chain: []
 
-date: 2010-03-15 00:00:00 -05:00
+date: 2010-10-01 00:00:00 -05:00
 default_executable: dagnabit-test
 dependencies: 
 - !ruby/object:Gem::Dependency 
-  name: activerecord
+  type: :runtime
   prerelease: false
-  requirement: &id001 !ruby/object:Gem::Requirement 
+  name: activerecord
+  version_requirements: &id001 !ruby/object:Gem::Requirement 
+    none: false
     requirements: 
-    - - ">="
+    - - ~>
       - !ruby/object:Gem::Version 
+        hash: 9
         segments: 
         - 2
-        - 1
-        - 0
-        version: 2.1.0
-  type: :runtime
-  version_requirements: *id001
+        - 3
+        - 5
+        version: 2.3.5
+  requirement: *id001
 - !ruby/object:Gem::Dependency 
-  name: activesupport
+  type: :development
   prerelease: false
-  requirement: &id002 !ruby/object:Gem::Requirement 
+  name: jeweler
+  version_requirements: &id002 !ruby/object:Gem::Requirement 
+    none: false
     requirements: 
     - - ">="
       - !ruby/object:Gem::Version 
+        hash: 3
         segments: 
-        - 2
-        - 3
-        - 2
-        version: 2.3.2
-  type: :runtime
-  version_requirements: *id002
+        - 0
+        version: "0"
+  requirement: *id002
 - !ruby/object:Gem::Dependency 
-  name: mocha
+  type: :development
   prerelease: false
-  requirement: &id003 !ruby/object:Gem::Requirement 
+  name: mocha
+  version_requirements: &id003 !ruby/object:Gem::Requirement 
+    none: false
     requirements: 
     - - "="
       - !ruby/object:Gem::Version 
+        hash: 43
         segments: 
         - 0
         - 9
         - 8
         version: 0.9.8
+  requirement: *id003
+- !ruby/object:Gem::Dependency 
   type: :development
-  version_requirements: *id003
+  prerelease: false
+  name: pg
+  version_requirements: &id004 !ruby/object:Gem::Requirement 
+    none: false
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        hash: 3
+        segments: 
+        - 0
+        version: "0"
+  requirement: *id004
 - !ruby/object:Gem::Dependency 
-  name: shoulda
+  type: :development
   prerelease: false
-  requirement: &id004 !ruby/object:Gem::Requirement 
+  name: shoulda
+  version_requirements: &id005 !ruby/object:Gem::Requirement 
+    none: false
     requirements: 
     - - "="
       - !ruby/object:Gem::Version 
+        hash: 35
         segments: 
         - 2
         - 10
         - 2
         version: 2.10.2
+  requirement: *id005
+- !ruby/object:Gem::Dependency 
   type: :development
-  version_requirements: *id004
+  prerelease: false
+  name: sqlite3-ruby
+  version_requirements: &id006 !ruby/object:Gem::Requirement 
+    none: false
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        hash: 3
+        segments: 
+        - 0
+        version: "0"
+  requirement: *id006
+- !ruby/object:Gem::Dependency 
+  type: :development
+  prerelease: false
+  name: redgreen
+  version_requirements: &id007 !ruby/object:Gem::Requirement 
+    none: false
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        hash: 3
+        segments: 
+        - 0
+        version: "0"
+  requirement: *id007
+- !ruby/object:Gem::Dependency 
+  type: :development
+  prerelease: false
+  name: rcov
+  version_requirements: &id008 !ruby/object:Gem::Requirement 
+    none: false
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        hash: 3
+        segments: 
+        - 0
+        version: "0"
+  requirement: *id008
+- !ruby/object:Gem::Dependency 
+  type: :development
+  prerelease: false
+  name: ZenTest
+  version_requirements: &id009 !ruby/object:Gem::Requirement 
+    none: false
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        hash: 3
+        segments: 
+        - 0
+        version: "0"
+  requirement: *id009
 description: 
 email: yipdw@northwestern.edu
 executables: 
@@ -86,6 +163,8 @@ files:
 - .autotest
 - .document
 - .gitignore
+- Gemfile
+- Gemfile.lock
 - History.txt
 - LICENSE
 - README.rdoc
@@ -144,23 +223,27 @@ rdoc_options:
 require_paths: 
 - lib
 required_ruby_version: !ruby/object:Gem::Requirement 
+  none: false
   requirements: 
   - - ">="
     - !ruby/object:Gem::Version 
+      hash: 3
       segments: 
       - 0
       version: "0"
 required_rubygems_version: !ruby/object:Gem::Requirement 
+  none: false
   requirements: 
   - - ">="
     - !ruby/object:Gem::Version 
+      hash: 3
       segments: 
       - 0
       version: "0"
 requirements: []
 
 rubyforge_project: 
-rubygems_version: 1.3.6
+rubygems_version: 1.3.7
 signing_key: 
 specification_version: 3
 summary: Directed acyclic graph plugin for ActiveRecord