ctioga2 0.5 → 0.6

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
@@ -16,7 +16,7 @@ require 'logger'
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  module CTioga2
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- Version::register_svn_info('$Revision: 327 $', '$Date: 2012-11-28 14:47:52 +0100 (Wed, 28 Nov 2012) $')
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+ Version::register_svn_info('$Revision: 497 $', '$Date: 2013-09-04 22:07:55 +0200 (Wed, 04 Sep 2013) $')
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  # This module should be included (or extended) by every class that
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  # need logging/debugging facilities.
@@ -70,6 +70,25 @@ module CTioga2
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  @@logger.level = Logger::WARN # Warnings and more only by default
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  end
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+
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+ # Logs to the target file, and fall back onto stderr should
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+ # opening fail.
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+ def self.log_to(target_file, message = nil)
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+ if target_file.is_a? String
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+ begin
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+ target_file = File.open(target_file, "w")
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+ if message
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+ target_file.puts message
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+ end
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+ rescue
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+ target_file = STDERR
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+ end
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+ end
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+ old = @@logger
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+ @@logger = Logger.new(target_file)
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+ @@logger.level = old.level
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+ end
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+
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  # Simple accessor for the @@log class variable.
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  def self.logger
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  return @@logger
@@ -20,7 +20,7 @@ require 'ctioga2/utils'
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  module CTioga2
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- Version::register_svn_info('$Revision: 401 $', '$Date: 2013-08-19 17:29:59 +0200 (Mon, 19 Aug 2013) $')
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+ Version::register_svn_info('$Revision: 484 $', '$Date: 2013-09-02 22:44:42 +0200 (Mon, 02 Sep 2013) $')
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  module MetaBuilder
@@ -149,8 +149,9 @@ module CTioga2
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  # We make a copy for our own purposes.
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  subtype = type[:subtype] || {:type => :string}
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  @subtype = Type.get_type(subtype)
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- @separator = /\s*,\s*/
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- @separator_out = ','
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+ @separator = type[:separator] || /\s*,\s*/
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+ @alternative_separator = type[:alternative_separator] || nil
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+ @separator_out = type[:separator_out] || ','
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  end
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  def type_name
@@ -158,7 +159,11 @@ module CTioga2
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  end
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  def string_to_type_internal(str)
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- ary = str.split(@separator)
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+ if @alternative_separator && str =~ @alternative_separator
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+ ary = str.split(@alternative_separator)
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+ else
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+ ary = str.split(@separator)
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+ end
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  return ary.map do |a|
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  @subtype.string_to_type(a)
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  end
@@ -167,6 +172,7 @@ module CTioga2
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  def type_to_string_internal(val)
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  return val.map do |a|
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  @subtype.type_to_string(a)
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+ # Won't alway work !
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  end.join(@separator_out)
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  end
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  end
@@ -155,7 +155,7 @@ require 'ctioga2/postprocess'
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  # displays of rate constants vs potentials)
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  module CTioga2
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157
 
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- Version::register_svn_info('$Revision: 431 $', '$Date: 2013-08-23 17:58:47 +0200 (Fri, 23 Aug 2013) $')
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+ Version::register_svn_info('$Revision: 478 $', '$Date: 2013-09-01 11:24:02 +0200 (Sun, 01 Sep 2013) $')
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  # This class is the core of ctioga. It parses the command-line arguments,
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  # reads all necessary files and plots graphs. Most of its functionality
@@ -201,6 +201,9 @@ module CTioga2
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  # Additional preamble for LaTeX output
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  attr_accessor :latex_preamble
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+ # Global font information
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+ attr_accessor :latex_font
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+
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  # What happens to generated PDF files (a PostProcess object)
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  attr_accessor :postprocess
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@@ -241,6 +244,10 @@ module CTioga2
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  # Original preamble
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  @latex_preamble = ""
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+ @latex_font = Graphics::Styles::FullLatexFont.new
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+
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+ @latex_font.size = 15
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+
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  @postprocess = PostProcess.new
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  # Make sure it is registered
@@ -333,6 +340,7 @@ module CTioga2
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  info { "Producing figure '#{figname}'" }
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+
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  t = create_figure_maker
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  # If figname is clearly a path, we split it into directory/name
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  # and set the output directory to directory.
@@ -349,10 +357,19 @@ module CTioga2
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  t.save_dir = @output_directory
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  end
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359
 
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- t.def_figure(figname) do
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+ effective_fig_name = figname.gsub(/[.\s]/) do |x|
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+ "__#{x.ord}__"
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+ end
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+
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+ if effective_fig_name != figname
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+ debug { "Mangled name to '#{effective_fig_name}'"}
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+ end
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+
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+ t.def_figure(effective_fig_name) do
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+ @latex_font.set_global_font(t)
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  @root_object.draw_root_object(t)
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371
  end
355
- t.make_preview_pdf(t.figure_index(figname))
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+ t.make_preview_pdf(t.figure_index(effective_fig_name))
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373
 
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  # We look for latex errors
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  if t.respond_to? :pdflatex_errors
@@ -365,6 +382,13 @@ module CTioga2
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  end
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383
  end
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385
+ # We first rename the PDF file if it was mangled.
386
+ if effective_fig_name != figname
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+ Dir.chdir(t.save_dir || ".") do
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+ File::rename("#{effective_fig_name}.pdf", "#{figname}.pdf")
389
+ end
390
+ end
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+
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392
  file = t.save_dir ? File::join(t.save_dir, figname + ".pdf") :
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  figname + ".pdf"
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@@ -440,6 +464,7 @@ module CTioga2
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  # applicable.
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  t.tex_preamble +=
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  "\n\\pdfinfo {\n#{title}/Creator(#{Utils::pdftex_quote_string("ctioga2 #{Version::version}")})\n}\n"
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+
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  return t
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  end
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@@ -542,6 +567,18 @@ the command {command: preamble} with the argument:
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  @ \\usepackage[utf8]{inputenc}\\usepackage[T1]{fontenc}
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569
 
570
+ EOD
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+
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+ LatexFontCommand =
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+ Cmd.new("set-global-font",nil,"--set-global-font",
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+ [], Graphics::Styles::FullLatexFont.options_hash) do |plotmaker, opts|
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+ plotmaker.latex_font.set_from_hash(opts)
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+ end
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+
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+ LatexFontCommand.describe('Set global font details',
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+ <<EOD, LaTeXGroup)
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+ Set global font. Sets the size of everything, including that of text
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+ that has already been used.
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  EOD
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@@ -30,11 +30,12 @@ module CTioga2
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  end
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  end
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+
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  # All files should use this function with the appropriate
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  # arguments and have the Date and Revision svn:keyword:. Use this
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  # way:
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  #
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- # Version::register_svn_info('$Revision: 424 $', '$Date: 2013-08-23 10:16:34 +0200 (Fri, 23 Aug 2013) $')
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+ # Version::register_svn_info('$Revision: 496 $', '$Date: 2013-09-04 21:31:56 +0200 (Wed, 04 Sep 2013) $')
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  #
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  # To set the correct properties, the following command-line can be
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  # used:
@@ -74,7 +75,7 @@ module CTioga2
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  }
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  # The position of the URL, used for getting the version
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- SVN_URL = '$HeadURL: svn+ssh://rubyforge.org/var/svn/ctioga2/releases/ctioga2-0.5/lib/ctioga2/utils.rb $'
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+ SVN_URL = '$HeadURL: svn+ssh://rubyforge.org/var/svn/ctioga2/releases/ctioga2-0.6/lib/ctioga2/utils.rb $'
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  # The version of ctioga2
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  CTIOGA_VERSION = if SVN_URL =~ /releases\/ctioga2-([^\/]+)/
@@ -83,7 +84,7 @@ module CTioga2
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  "SVN version"
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  end
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86
- register_svn_info('$Revision: 424 $', '$Date: 2013-08-23 10:16:34 +0200 (Fri, 23 Aug 2013) $')
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+ register_svn_info('$Revision: 496 $', '$Date: 2013-09-04 21:31:56 +0200 (Wed, 04 Sep 2013) $')
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88
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  end
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@@ -104,6 +105,16 @@ module CTioga2
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  end
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  end
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+ # Converts a number to a float while trying to stay as lenient as
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+ # possible
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+ def self.txt_to_float(txt)
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+ v = txt.to_f
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+ if v == 0.0
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+ return Float(txt)
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+ end
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+ return v
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+ end
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+
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  # Takes two arrays of the same size (vectors) and mix them
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  # a * r + b * (1 - r)
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  def self.mix_objects(a,b,r)
@@ -130,6 +141,20 @@ module CTioga2
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  end
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  end
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+ # Quotes a string so it can be included directly within a
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+ # \pdfinfo statement (for instance).
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+ def self.tex_quote_string(str)
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+ return str.gsub(/([%#])|([{}~_^])|\\/) do
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+ if $1
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+ "\\#{$1}"
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+ elsif $2
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+ "\\string#{$2}"
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+ else # Quoting \
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+ "\\string\\\\"
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+ end
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+ end
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+ end
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+
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  # Binomial coefficients (for the smooth filter)
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  def self.cnk(n,k)
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  res = 1.0
@@ -185,9 +210,23 @@ module CTioga2
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  end
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  raise "Should not reach this !"
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  end
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-
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+
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+ # Returns the smallest power of 10 within the given buffer
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+ # (excluding 0 or anything really close). That is, if you multiply
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+ # by 10 to the power what is returned, the smallest will be in the
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+ # range 1-10.
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+ def self.common_pow10(vect, method = :floor, tolerance = 1e-8)
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+ a = vect.abs
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+ a.sort!
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+ while (a.size > 1) && (a.first < tolerance * a.last)
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+ a.shift
224
+ end
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+
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+ return Math.log10(a.first).send(method)
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+ end
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  end
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+
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  # This class implements a Hash whose values can also be retrieved by
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  # pattern matching.
@@ -246,6 +285,20 @@ module CTioga2
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247
286
  end
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287
 
288
+ ######################################################################
289
+ # Now come a few functions that add to ruby's standard classes or
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+ # modules
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+
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+ module Math
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+
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+ # The absolute value, but in a more easy to use way
295
+ def abs(x)
296
+ return x.abs
297
+ end
298
+ end
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+
300
+
301
+
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  # Here, we define an additional function in the Hash class: without
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  class Hash
251
304
 
@@ -266,6 +319,45 @@ class Hash
266
319
 
267
320
  end
268
321
 
322
+
323
+ class String
324
+ # Splits a string into substrings at the given regexp, but only if
325
+ # the splitting occurs at top-level with respect to parentheses.
326
+ def split_at_toplevel(regexp)
327
+ # Groups
328
+ grps = {}
329
+
330
+ sz = 0
331
+ s = self.dup
332
+ while true
333
+ s.gsub!(/\([^()]+\)/) do |x|
334
+ idx = grps.size
335
+ rep = "__#{idx}__"
336
+ grps[rep] = x
337
+ rep
338
+ end
339
+ if sz == grps.size
340
+ break
341
+ else
342
+ sz = grps.size
343
+ end
344
+ end
345
+
346
+ splitted = s.split(regexp)
347
+
348
+ while grps.size > 0
349
+ for s in splitted
350
+ s.gsub!(/__\d+__/) do |x|
351
+ rep = grps[x]
352
+ grps.delete(x)
353
+ rep
354
+ end
355
+ end
356
+ end
357
+ return splitted
358
+ end
359
+ end
360
+
269
361
  begin
270
362
  # This is a dirty hack in order to ensure that the SVN revision
271
363
  # information is kept up-to-date even when using git-svn. This
@@ -273,3 +365,4 @@ begin
273
365
  require 'ctioga2/git-fools-svn'
274
366
  rescue LoadError => e
275
367
  end
368
+
metadata CHANGED
@@ -1,7 +1,7 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: ctioga2
3
3
  version: !ruby/object:Gem::Version
4
- version: '0.5'
4
+ version: '0.6'
5
5
  prerelease:
6
6
  platform: ruby
7
7
  authors:
@@ -9,7 +9,7 @@ authors:
9
9
  autorequire:
10
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  bindir: bin
11
11
  cert_chain: []
12
- date: 2013-08-26 00:00:00.000000000 Z
12
+ date: 2013-09-04 00:00:00.000000000 Z
13
13
  dependencies:
14
14
  - !ruby/object:Gem::Dependency
15
15
  name: tioga
@@ -18,7 +18,7 @@ dependencies:
18
18
  requirements:
19
19
  - - ! '>='
20
20
  - !ruby/object:Gem::Version
21
- version: '1.16'
21
+ version: '1.17'
22
22
  type: :runtime
23
23
  prerelease: false
24
24
  version_requirements: !ruby/object:Gem::Requirement
@@ -26,7 +26,7 @@ dependencies:
26
26
  requirements:
27
27
  - - ! '>='
28
28
  - !ruby/object:Gem::Version
29
- version: '1.16'
29
+ version: '1.17'
30
30
  description: ! 'ctioga2 is a command-driven plotting program that produces
31
31
 
32
32
  high quality PDF files. It can be used both from the command-line
@@ -43,109 +43,111 @@ executables:
43
43
  extensions: []
44
44
  extra_rdoc_files: []
45
45
  files:
46
- - lib/ctioga2/data/indexed-dtable.rb
47
- - lib/ctioga2/data/datacolumn.rb
48
- - lib/ctioga2/data/point.rb
49
- - lib/ctioga2/data/stack.rb
50
- - lib/ctioga2/data/filters.rb
51
- - lib/ctioga2/data/dataset.rb
52
- - lib/ctioga2/data/backends/factory.rb
53
- - lib/ctioga2/data/backends/parameter.rb
54
- - lib/ctioga2/data/backends/description.rb
55
- - lib/ctioga2/data/backends/backends.rb
56
- - lib/ctioga2/data/backends/backend.rb
57
- - lib/ctioga2/data/backends/backends/math.rb
58
- - lib/ctioga2/data/backends/backends/text.rb
59
- - lib/ctioga2/data/backends/backends/gnuplot.rb
60
- - lib/ctioga2/data/backends/backends/direct.rb
61
- - lib/ctioga2/log.rb
62
- - lib/ctioga2/plotmaker.rb
46
+ - lib/ctioga2/commands/variables.rb
47
+ - lib/ctioga2/commands/groups.rb
48
+ - lib/ctioga2/commands/strings.rb
49
+ - lib/ctioga2/commands/interpreter.rb
63
50
  - lib/ctioga2/commands/type.rb
64
- - lib/ctioga2/commands/general-commands.rb
65
- - lib/ctioga2/commands/commands.rb
51
+ - lib/ctioga2/commands/parsers/file.rb
52
+ - lib/ctioga2/commands/parsers/old-file.rb
53
+ - lib/ctioga2/commands/parsers/command-line.rb
54
+ - lib/ctioga2/commands/doc/wordwrap.rb
66
55
  - lib/ctioga2/commands/doc/introspection.rb
67
56
  - lib/ctioga2/commands/doc/documentation-commands.rb
68
- - lib/ctioga2/commands/doc/help.rb
57
+ - lib/ctioga2/commands/doc/man.rb
69
58
  - lib/ctioga2/commands/doc/markup.rb
70
59
  - lib/ctioga2/commands/doc/doc.rb
71
- - lib/ctioga2/commands/doc/wordwrap.rb
72
- - lib/ctioga2/commands/doc/man.rb
60
+ - lib/ctioga2/commands/doc/help.rb
73
61
  - lib/ctioga2/commands/doc/html.rb
74
- - lib/ctioga2/commands/strings.rb
75
- - lib/ctioga2/commands/variables.rb
76
- - lib/ctioga2/commands/parsers/file.rb
77
- - lib/ctioga2/commands/parsers/command-line.rb
78
- - lib/ctioga2/commands/parsers/old-file.rb
79
- - lib/ctioga2/commands/context.rb
80
- - lib/ctioga2/commands/groups.rb
81
- - lib/ctioga2/commands/interpreter.rb
82
62
  - lib/ctioga2/commands/arguments.rb
63
+ - lib/ctioga2/commands/context.rb
83
64
  - lib/ctioga2/commands/general-types.rb
84
- - lib/ctioga2/graphics/legends.rb
85
- - lib/ctioga2/graphics/styles/curve.rb
65
+ - lib/ctioga2/commands/general-commands.rb
66
+ - lib/ctioga2/commands/commands.rb
67
+ - lib/ctioga2/postprocess.rb
68
+ - lib/ctioga2/utils.rb
69
+ - lib/ctioga2/graphics/types/dimensions.rb
70
+ - lib/ctioga2/graphics/types/boundaries.rb
71
+ - lib/ctioga2/graphics/types/location.rb
72
+ - lib/ctioga2/graphics/types/grid.rb
73
+ - lib/ctioga2/graphics/types/boxes.rb
74
+ - lib/ctioga2/graphics/types/bijection.rb
75
+ - lib/ctioga2/graphics/types/fill.rb
76
+ - lib/ctioga2/graphics/types/point.rb
77
+ - lib/ctioga2/graphics/coordinates.rb
78
+ - lib/ctioga2/graphics/elements/redirecting-container.rb
79
+ - lib/ctioga2/graphics/elements/parametric2d.rb
80
+ - lib/ctioga2/graphics/elements/gradient-region.rb
81
+ - lib/ctioga2/graphics/elements/region.rb
82
+ - lib/ctioga2/graphics/elements/contour.rb
83
+ - lib/ctioga2/graphics/elements/xyz-map.rb
84
+ - lib/ctioga2/graphics/elements/tangent.rb
85
+ - lib/ctioga2/graphics/elements/primitive.rb
86
+ - lib/ctioga2/graphics/elements/element.rb
87
+ - lib/ctioga2/graphics/elements/xyz-contour.rb
88
+ - lib/ctioga2/graphics/elements/curve2d.rb
89
+ - lib/ctioga2/graphics/elements/subplot.rb
90
+ - lib/ctioga2/graphics/elements/containers.rb
91
+ - lib/ctioga2/graphics/styles/arrows.rb
92
+ - lib/ctioga2/graphics/styles/colormap.rb
93
+ - lib/ctioga2/graphics/styles/box.rb
94
+ - lib/ctioga2/graphics/styles/carrays.rb
95
+ - lib/ctioga2/graphics/styles/location.rb
96
+ - lib/ctioga2/graphics/styles/contour.rb
86
97
  - lib/ctioga2/graphics/styles/errorbar.rb
87
- - lib/ctioga2/graphics/styles/gradients.rb
98
+ - lib/ctioga2/graphics/styles/sets.rb
99
+ - lib/ctioga2/graphics/styles/texts.rb
100
+ - lib/ctioga2/graphics/styles/plot.rb
88
101
  - lib/ctioga2/graphics/styles/factory.rb
89
102
  - lib/ctioga2/graphics/styles/sheet.rb
90
- - lib/ctioga2/graphics/styles/carrays.rb
91
- - lib/ctioga2/graphics/styles/location.rb
92
- - lib/ctioga2/graphics/styles/map-axes.rb
93
- - lib/ctioga2/graphics/styles/arrows.rb
94
- - lib/ctioga2/graphics/styles/drawable.rb
95
103
  - lib/ctioga2/graphics/styles/axes.rb
96
- - lib/ctioga2/graphics/styles/background.rb
97
104
  - lib/ctioga2/graphics/styles/base.rb
98
- - lib/ctioga2/graphics/styles/sets.rb
99
- - lib/ctioga2/graphics/styles/plot.rb
100
- - lib/ctioga2/graphics/styles/contour.rb
101
- - lib/ctioga2/graphics/styles/colormap.rb
102
- - lib/ctioga2/graphics/styles/texts.rb
105
+ - lib/ctioga2/graphics/styles/gradients.rb
106
+ - lib/ctioga2/graphics/styles/ticks.rb
103
107
  - lib/ctioga2/graphics/styles/legend.rb
104
- - lib/ctioga2/graphics/styles/box.rb
108
+ - lib/ctioga2/graphics/styles/drawable.rb
109
+ - lib/ctioga2/graphics/styles/background.rb
110
+ - lib/ctioga2/graphics/styles/map-axes.rb
111
+ - lib/ctioga2/graphics/styles/curve.rb
105
112
  - lib/ctioga2/graphics/styles.rb
106
- - lib/ctioga2/graphics/coordinates.rb
107
- - lib/ctioga2/graphics/legends/area.rb
108
- - lib/ctioga2/graphics/legends/items.rb
113
+ - lib/ctioga2/graphics/elements.rb
114
+ - lib/ctioga2/graphics/legends/provider.rb
109
115
  - lib/ctioga2/graphics/legends/storage.rb
116
+ - lib/ctioga2/graphics/legends/items.rb
117
+ - lib/ctioga2/graphics/legends/area.rb
110
118
  - lib/ctioga2/graphics/legends/multicols.rb
111
- - lib/ctioga2/graphics/legends/provider.rb
119
+ - lib/ctioga2/graphics/legends.rb
120
+ - lib/ctioga2/graphics/root.rb
112
121
  - lib/ctioga2/graphics/types.rb
113
- - lib/ctioga2/graphics/elements/subplot.rb
114
- - lib/ctioga2/graphics/elements/parametric2d.rb
115
- - lib/ctioga2/graphics/elements/redirecting-container.rb
116
- - lib/ctioga2/graphics/elements/primitive.rb
117
- - lib/ctioga2/graphics/elements/region.rb
118
- - lib/ctioga2/graphics/elements/curve2d.rb
119
- - lib/ctioga2/graphics/elements/containers.rb
120
- - lib/ctioga2/graphics/elements/tangent.rb
121
- - lib/ctioga2/graphics/elements/xyz-contour.rb
122
- - lib/ctioga2/graphics/elements/xyz-map.rb
123
- - lib/ctioga2/graphics/elements/contour.rb
124
- - lib/ctioga2/graphics/elements/gradient-region.rb
125
- - lib/ctioga2/graphics/elements/element.rb
126
- - lib/ctioga2/graphics/subplot-commands.rb
127
122
  - lib/ctioga2/graphics/generator.rb
128
- - lib/ctioga2/graphics/elements.rb
129
- - lib/ctioga2/graphics/types/bijection.rb
130
- - lib/ctioga2/graphics/types/location.rb
131
- - lib/ctioga2/graphics/types/dimensions.rb
132
- - lib/ctioga2/graphics/types/point.rb
133
- - lib/ctioga2/graphics/types/boundaries.rb
134
- - lib/ctioga2/graphics/types/boxes.rb
135
- - lib/ctioga2/graphics/types/grid.rb
136
- - lib/ctioga2/graphics/root.rb
137
- - lib/ctioga2/utils.rb
138
- - lib/ctioga2/postprocess.rb
139
- - lib/ctioga2/metabuilder/type.rb
140
- - lib/ctioga2/metabuilder/types.rb
141
- - lib/ctioga2/metabuilder/types/lists.rb
123
+ - lib/ctioga2/graphics/subplot-commands.rb
124
+ - lib/ctioga2/data/indexed-dtable.rb
125
+ - lib/ctioga2/data/datacolumn.rb
126
+ - lib/ctioga2/data/filters.rb
127
+ - lib/ctioga2/data/stack.rb
128
+ - lib/ctioga2/data/backends/backends.rb
129
+ - lib/ctioga2/data/backends/backends/gnuplot.rb
130
+ - lib/ctioga2/data/backends/backends/math.rb
131
+ - lib/ctioga2/data/backends/backends/text.rb
132
+ - lib/ctioga2/data/backends/backends/direct.rb
133
+ - lib/ctioga2/data/backends/factory.rb
134
+ - lib/ctioga2/data/backends/description.rb
135
+ - lib/ctioga2/data/backends/parameter.rb
136
+ - lib/ctioga2/data/backends/backend.rb
137
+ - lib/ctioga2/data/dataset.rb
138
+ - lib/ctioga2/data/point.rb
139
+ - lib/ctioga2/log.rb
142
140
  - lib/ctioga2/metabuilder/types/dates.rb
143
- - lib/ctioga2/metabuilder/types/numbers.rb
144
- - lib/ctioga2/metabuilder/types/styles.rb
145
141
  - lib/ctioga2/metabuilder/types/strings.rb
146
142
  - lib/ctioga2/metabuilder/types/coordinates.rb
147
143
  - lib/ctioga2/metabuilder/types/data.rb
144
+ - lib/ctioga2/metabuilder/types/styles.rb
145
+ - lib/ctioga2/metabuilder/types/lists.rb
146
+ - lib/ctioga2/metabuilder/types/numbers.rb
148
147
  - lib/ctioga2/metabuilder/types/generic.rb
148
+ - lib/ctioga2/metabuilder/type.rb
149
+ - lib/ctioga2/metabuilder/types.rb
150
+ - lib/ctioga2/plotmaker.rb
149
151
  - COPYING
150
152
  - Changelog
151
153
  - setup.rb