csv2dokuwiki_tab 0.3.1 → 0.4.0

checksums.yaml

@@ -1,7 +1,7 @@
 ---
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-  data.tar.gz: 6e7383e2e5da66889d15fc7fb80f9126499b0d93b5eca4830259e253b999a9fb
+  metadata.gz: '058ac7e8642fc05e6c32d6f7176155a42bba11768d216d7ac2ae346e24363068'
+  data.tar.gz: 0ca3b9cbb04c16fac008c8cec7fa502d78285373defd48c51b1d2300d184d685
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-  data.tar.gz: 1b795aa9e5ed420547b8e773c5ae6b7645ebdd2d30f8f976a9d66fbfb141a96baeedf1e16a57ee0381781420a9e7783269aa18b430dd5c110ca16d1ad135d424
+  metadata.gz: fa87dd40ca003455256e9ee76a9a5dc839aaad2b5fb44ead93a3b38728d42cdbe469caa84680d09cb5c1746265c2f181bba1ecfc848602bf64e0c2f6d71cd9e7
+  data.tar.gz: 37ffa816325d2c2cd46e2ef9c153f89a8667b1cc1cc0b33c93ad24a8d47935b9774a0c219df4a2cb8f4ba6e888b02e2cb5a32ba43d2928bfc739675c35887d53

data/examples/README.md

@@ -0,0 +1,3 @@
+example2.csv
+deficition of GAF format of Gene Ontology annotations.
+(https://geneontology.org/docs/go-annotation-file-gaf-format-2.1/)

data/examples/example.csv.convert_def.txt

@@ -0,0 +1,4 @@
+^ Name ^ Age ^ Country ^
+| Alice | 30 | USA |
+| Bob | 25 | Canada |
+| Charlie | 35 | UK |

data/examples/example2.csv

@@ -0,0 +1,18 @@
+Column,Content,Required?,Cardinality,Example,
+1,DB,required,1,UniProtKB,
+2,DB Object ID,required,1,P12345,
+3,DB Object Symbol,required,1,PHO3,
+4,Relation,required,1 or 2,NOT,involved_in
+5,GO ID,required,1,GO:0003993,
+6,DB:Reference (|DB:Reference),required,1 or greater,PMID:2676709,
+7,Evidence Code,required,1,IMP,
+8,With (or) From,optional,0 or greater,GO:0000346,
+9,Aspect,required,1,F,
+10,DB Object Name,optional,0 or 1,Toll-like receptor 4,
+11,DB Object Synonym (|Synonym),optional,0 or greater,hToll,Tollbooth
+12,DB Object Type,required,1,protein,
+13,Taxon(|taxon),required,1 or 2,taxon:9606,
+14,Date,required,1,20090118,
+15,Assigned By,required,1,SGD,
+16,Annotation Extension,optional,0 or greater,part_of(CL:0000576),
+17,Gene Product Form ID,optional,0 or 1,UniProtKB:P12345-2,

data/exe/csv2dokuwiki_tab.rb

@@ -52,7 +52,7 @@ end
 # Main CLI
 
 opt = parse_options
-p opt
+#p opt
 sep = opt[:tab] ? "\t" : ","
 converter = Csv2dokuwikiTab::Converter.new(opt[:file], opt[:header_type], sep)
 converter.convert

data/lib/csv2dokuwiki_tab/version.rb

@@ -1,5 +1,5 @@
 # frozen_string_literal: true
 
 module Csv2dokuwikiTab
-  VERSION = "0.3.1"
+  VERSION = "0.4.0"
 end

data/lib/csv2dokuwiki_tab.rb

@@ -11,8 +11,8 @@ require_relative "csv2dokuwiki_tab/version"
 ############################
 
 module Csv2dokuwikiTab
+
   class Error < StandardError; end
-  # Your code goes here...
 
   require "csv"
 
@@ -22,6 +22,11 @@ module Csv2dokuwikiTab
   HEADER_BOTH = 3
 
   class Converter
+
+    def self.escape(text)
+      text.to_s.gsub('|', '%%|%%').gsub('^', '%%^%%')
+    end
+
     def initialize(file, header_type=1, sep=",")
       @header_type = header_type
       @sep = sep
@@ -57,18 +62,18 @@ module Csv2dokuwikiTab
     def print_header_row(row)
       case @header_type
       when HEADER_ROW, HEADER_BOTH
-        puts "^" + row.map { |x| " #{x} " }.join("^") + "^"
+        puts "^" + row.map { |x| " #{Converter.escape(x)} " }.join("^") + "^"
       else
-        puts "|" + row.map { |x| " #{x} " }.join("|") + "|"
+        puts "|" + row.map { |x| " #{Converter.escape(x)} " }.join("|") + "|"
       end
     end
 
     def print_data_row(row)
       case @header_type
       when HEADER_COL, HEADER_BOTH
-        puts "^" + row[0].to_s + "^" + row[1..-1].map { |x| " #{x} " }.join("|") + "|"
+        puts "^" + row[0].to_s + "^" + row[1..-1].map { |x| " #{Converter.escape(x)} " }.join("|") + "|"
       else
-        puts "|" + row.map { |x| " #{x} " }.join("|") + "|"
+        puts "|" + row.map { |x| " #{Converter.escape(x)} " }.join("|") + "|"
       end
     end
   end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: csv2dokuwiki_tab
 version: !ruby/object:Gem::Version
-  version: 0.3.1
+  version: 0.4.0
 platform: ruby
 authors:
 - Shuji Shigenobu
 autorequire:
 bindir: exe
 cert_chain: []
-date: 2025-09-13 00:00:00.000000000 Z
+date: 2025-09-23 00:00:00.000000000 Z
 dependencies: []
 description: This gem provides a command-line tool to convert CSV files into DokuWiki
   table format.
@@ -23,8 +23,11 @@ files:
 - LICENSE
 - README.md
 - Rakefile
+- examples/README.md
 - examples/example.csv
+- examples/example.csv.convert_def.txt
 - examples/example.tsv
+- examples/example2.csv
 - exe/csv2dokuwiki_tab
 - exe/csv2dokuwiki_tab.rb
 - lib/csv2dokuwiki_tab.rb