crysna 0.0.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +7 -0
- data/.document +5 -0
- data/CHANGES +24 -0
- data/Gemfile +26 -0
- data/Gemfile.lock +91 -0
- data/LICENSE.txt +20 -0
- data/README.rdoc +19 -0
- data/Rakefile +53 -0
- data/VERSION +1 -0
- data/bin/checkmodel +66 -0
- data/bin/collectcell +92 -0
- data/bin/fitframe +68 -0
- data/bin/occupiedpolyhedralsite +96 -0
- data/bin/occupiedscattersite +77 -0
- data/bin/site2poscar +66 -0
- data/bin/site2pov +30 -0
- data/bin/sitecombination +69 -0
- data/bin/sitemigration +80 -0
- data/bin/sitemigrationdistance +87 -0
- data/bin/siteoperation +109 -0
- data/bin/sitesingle +36 -0
- data/bin/siteuniq +32 -0
- data/bin/symidsite +65 -0
- data/bin/transitcell +46 -0
- data/crysna.gemspec +219 -0
- data/lib/crysna.rb +26 -0
- data/lib/crysna/atom.rb +97 -0
- data/lib/crysna/cell.rb +314 -0
- data/lib/crysna/frameatom.rb +13 -0
- data/lib/crysna/frameinterstitialcell.rb +309 -0
- data/lib/crysna/interstitialatom.rb +13 -0
- data/lib/crysna/modelstructure.rb +333 -0
- data/lib/crysna/optionmanager.rb +177 -0
- data/lib/crysna/site.rb +35 -0
- data/lib/crysna/siteconfiguration.rb +26 -0
- data/lib/crysna/sitenamelabeledcell.rb +220 -0
- data/lib/crysna/siteoperation.rb +56 -0
- data/lib/crysna/sitewithposition.rb +24 -0
- data/lib/crysna/transitionfinder.rb +448 -0
- data/lib/crysna/transitionfinder/cell.rb +144 -0
- data/lib/crysna/transitionfinder/cellmanager.rb +129 -0
- data/lib/crysna/transitionfinder/edge.rb +54 -0
- data/test/.gitignore +1 -0
- data/test/cell_orig/POSCAR +17 -0
- data/test/cell_orig/model.yaml +122 -0
- data/test/collectcells/.gitignore +2 -0
- data/test/collectcells/model.yaml +154 -0
- data/test/collectcells/nooutcar/minexpconfiguration.yaml +22 -0
- data/test/collectcells/normal-higher/OUTCAR +2406 -0
- data/test/collectcells/normal-higher/minexpconfiguration.yaml +22 -0
- data/test/collectcells/normal-lower/OUTCAR +2406 -0
- data/test/collectcells/normal-lower/minexpconfiguration.yaml +22 -0
- data/test/collectcells/normal/OUTCAR +2406 -0
- data/test/collectcells/normal/minexpconfiguration.yaml +22 -0
- data/test/collectcells/normalB/OUTCAR +2406 -0
- data/test/collectcells/normalB/minexpconfiguration.yaml +22 -0
- data/test/collectcells/unfinished/OUTCAR +40702 -0
- data/test/collectcells/unfinished/minexpconfiguration.yaml +22 -0
- data/test/collectcells/unidentified/OUTCAR +3541 -0
- data/test/collectcells/unidentified/minexpconfiguration.yaml +2 -0
- data/test/fitmodelstructure/.gitignore +1 -0
- data/test/fitmodelstructure/AgI/CONTCAR +17 -0
- data/test/fitmodelstructure/AgI/fitmodelstructure.log +1161 -0
- data/test/fitmodelstructure/AgI/model.yaml +45 -0
- data/test/fitmodelstructure/normal/CONTCAR +17 -0
- data/test/fitmodelstructure/normal/fitmodelstructure.log +5063 -0
- data/test/fitmodelstructure/normal/model.yaml +122 -0
- data/test/fitmodelstructure/unidentified/CONTCAR +44 -0
- data/test/fitmodelstructure/unidentified/fitmodelstructure.log +8833 -0
- data/test/fitmodelstructure/unidentified/model.yaml +154 -0
- data/test/helper.rb +17 -0
- data/test/identifypolyhedralsites/.gitignore +1 -0
- data/test/identifypolyhedralsites/identifyatomsites.log +333 -0
- data/test/identifypolyhedralsites/normal/fitmodelstructure.yaml +60 -0
- data/test/identifypolyhedralsites/normal/model.yaml +122 -0
- data/test/identifypolyhedralsites/unidentified/fitmodelstructure.yaml +2 -0
- data/test/identifypolyhedralsites/unidentified/model.yaml +154 -0
- data/test/identifypolyhedralsites/volumemismatch/fitmodelstructure.yaml +101 -0
- data/test/identifypolyhedralsites/volumemismatch/model.yaml +154 -0
- data/test/identifyscattersites/CONTCAR +17 -0
- data/test/identifyscattersites/POSCAR +12 -0
- data/test/identifyscattersites/fitmodelstructure.log +1 -0
- data/test/identifyscattersites/fitmodelstructure.yaml +0 -0
- data/test/identifyscattersites/identifyscattersites.yaml +5 -0
- data/test/identifyscattersites/model.yaml +45 -0
- data/test/minexpconfiguration/.gitignore +1 -0
- data/test/minexpconfiguration/collective/AgI/.gitignore +2 -0
- data/test/minexpconfiguration/collective/AgI/siteoperations.yaml +51265 -0
- data/test/minexpconfiguration/collective/AgI/sitesingle.yaml +15 -0
- data/test/minexpconfiguration/collective/AgI/test.sh +2 -0
- data/test/minexpconfiguration/normal/identifysites.yaml +22 -0
- data/test/minexpconfiguration/normal/minexpconfiguration.log +0 -0
- data/test/minexpconfiguration/normal/siteoperations.yaml +1793 -0
- data/test/minexpconfiguration/unidentified/identifysites.yaml +2 -0
- data/test/minexpconfiguration/unidentified/siteoperations.yaml +1793 -0
- data/test/sitecombination/initsites.yaml +7 -0
- data/test/sitecombination/initsites_test2.yaml +8 -0
- data/test/sitecombination/sitecombination.yaml +29 -0
- data/test/siteconfiguration/elements-sitenames.yaml +2 -0
- data/test/siteconfiguration/latticeaxes.yaml +3 -0
- data/test/siteconfiguration/sitenames-coordinates.yaml +4 -0
- data/test/sitemigrationsdistance/model.yaml +45 -0
- data/test/siteoperations/.gitignore +2 -0
- data/test/siteoperations/model.yaml +43 -0
- data/test/siteoperations/symmetryoperations.yaml +1441 -0
- data/test/sitesingle/.gitignore +1 -0
- data/test/sitesingle/sitecombination.yaml +29 -0
- data/test/siteuniq/minexpconfiguration.yaml +15 -0
- data/test/siteuniq/siteuniq.yaml +8 -0
- data/test/test_atom.rb +206 -0
- data/test/test_cell.rb +604 -0
- data/test/test_commands.rb +340 -0
- data/test/test_crystana.rb +7 -0
- data/test/test_frameatom.rb +22 -0
- data/test/test_frameinterstitialcell.rb +939 -0
- data/test/test_interstitialatom.rb +22 -0
- data/test/test_modelstructure.rb +807 -0
- data/test/test_optionmanager.rb +172 -0
- data/test/test_site.rb +40 -0
- data/test/test_siteconfiguration.rb +29 -0
- data/test/test_sitenamelabeledcell.rb +528 -0
- data/test/test_siteoperation.rb +79 -0
- data/test/test_sitewithposition.rb +20 -0
- data/test/test_transitionfinder.rb +432 -0
- data/test/transitcell/.gitignore +2 -0
- data/test/transitcell/collectcells.yaml +51 -0
- data/test/transitcell/sitemigrations.yaml +8 -0
- data/test/transitcell/siteoperations.yaml +17 -0
- data/test/transitcell/transitcell.log +1342 -0
- data/test/transitionfinder/collectcells.yaml +81 -0
- data/test/transitionfinder/sitemigrations.yaml +33 -0
- data/test/transitionfinder/siteoperations.yaml +16 -0
- data/test/transitionfinder/test_cell.rb +287 -0
- data/test/transitionfinder/test_cellmanager.rb +185 -0
- data/test/transitionfinder/test_edge.rb +49 -0
- data/test/uniquesitesgenerator/elements-sitenames.yaml +1 -0
- data/test/uniquesitesgenerator/siteoperations.yaml +9 -0
- metadata +406 -0
|
@@ -0,0 +1,154 @@
|
|
|
1
|
+
# Made from Li3PO4 structure.
|
|
2
|
+
frame_elements: [ 2 ]
|
|
3
|
+
|
|
4
|
+
frame_sites:
|
|
5
|
+
FS_00: [ 0.29230, 0.31330, 0.39610]
|
|
6
|
+
FS_01: [ 0.70770, 0.31330, 0.39610]
|
|
7
|
+
FS_02: [ 0.00000, 0.81860, 0.31720]
|
|
8
|
+
FS_03: [ 0.50000, 0.89480, 0.40040]
|
|
9
|
+
FS_04: [ 0.00000, 0.10520, 0.90040]
|
|
10
|
+
FS_05: [ 0.50000, 0.18140, 0.81720]
|
|
11
|
+
FS_06: [ 0.20770, 0.68670, 0.89610]
|
|
12
|
+
FS_07: [ 0.79230, 0.68670, 0.89610]
|
|
13
|
+
|
|
14
|
+
symmetry_operations:
|
|
15
|
+
-
|
|
16
|
+
rotation:
|
|
17
|
+
- [ 1, 0, 0]
|
|
18
|
+
- [ 0, 1, 0]
|
|
19
|
+
- [ 0, 0, 1]
|
|
20
|
+
translation: [0.000000, 0.000000, 0.000000]
|
|
21
|
+
-
|
|
22
|
+
rotation:
|
|
23
|
+
- [-1, 0, 0]
|
|
24
|
+
- [ 0, 1, 0]
|
|
25
|
+
- [ 0, 0, 1]
|
|
26
|
+
translation: [0.000000, 0.000000, 0.000000]
|
|
27
|
+
-
|
|
28
|
+
rotation:
|
|
29
|
+
- [ 1, 0, 0]
|
|
30
|
+
- [ 0, -1, 0]
|
|
31
|
+
- [ 0, 0, 1]
|
|
32
|
+
translation: [0.500000, 1.000000, 0.500000]
|
|
33
|
+
-
|
|
34
|
+
rotation:
|
|
35
|
+
- [-1, 0, 0]
|
|
36
|
+
- [ 0, -1, 0]
|
|
37
|
+
- [ 0, 0, 1]
|
|
38
|
+
translation: [0.500000, 1.000000, 0.500000]
|
|
39
|
+
|
|
40
|
+
octahedral_sites:
|
|
41
|
+
A:
|
|
42
|
+
- [["FS_00", [ 0, 0, 0]], ["FS_07", [ -1, 0, 0]]]
|
|
43
|
+
- [["FS_01", [ -1, 0, 0]], ["FS_06", [ 0, 0, 0]]]
|
|
44
|
+
- [["FS_02", [ 0, 0, 0]], ["FS_04", [ 0, 0, 0]]]
|
|
45
|
+
B:
|
|
46
|
+
- [["FS_00", [ 0, 0, 0]], ["FS_07", [ 0, 0, 0]]]
|
|
47
|
+
- [["FS_01", [ 0, 0, 0]], ["FS_06", [ 0, 0, 0]]]
|
|
48
|
+
- [["FS_03", [ 0, 0, 0]], ["FS_05", [ 0, 0, 0]]]
|
|
49
|
+
C:
|
|
50
|
+
- [["FS_00", [ 0, 0, 0]], ["FS_06", [ 0,-1, 0]]]
|
|
51
|
+
- [["FS_02", [ 0,-1, 0]], ["FS_05", [ 0, 0, 0]]]
|
|
52
|
+
- [["FS_03", [ 0,-1, 0]], ["FS_04", [ 0, 0, 0]]]
|
|
53
|
+
D:
|
|
54
|
+
- [["FS_01", [ 0, 0, 0]], ["FS_07", [ 0,-1, 0]]]
|
|
55
|
+
- [["FS_02", [ 1,-1, 0]], ["FS_05", [ 0, 0, 0]]]
|
|
56
|
+
- [["FS_03", [ 0,-1, 0]], ["FS_04", [ 1, 0, 0]]]
|
|
57
|
+
E:
|
|
58
|
+
- [["FS_00", [ 0, 0, 0]], ["FS_07", [ -1, 0, -1]]]
|
|
59
|
+
- [["FS_01", [ -1, 0, 0]], ["FS_06", [ 0, 0, -1]]]
|
|
60
|
+
- [["FS_02", [ 0, 0, 0]], ["FS_04", [ 0, 0, -1]]]
|
|
61
|
+
F:
|
|
62
|
+
- [["FS_00", [ 0, 0, 0]], ["FS_07", [ 0, 0, -1]]]
|
|
63
|
+
- [["FS_01", [ 0, 0, 0]], ["FS_06", [ 0, 0, -1]]]
|
|
64
|
+
- [["FS_03", [ 0, 0, 0]], ["FS_05", [ 0, 0, -1]]]
|
|
65
|
+
G:
|
|
66
|
+
- [["FS_00", [ 0, 0, 0]], ["FS_06", [ 0,-1, -1]]]
|
|
67
|
+
- [["FS_02", [ 0,-1, 0]], ["FS_05", [ 0, 0, -1]]]
|
|
68
|
+
- [["FS_03", [ 0,-1, 0]], ["FS_04", [ 0, 0, -1]]]
|
|
69
|
+
H:
|
|
70
|
+
- [["FS_01", [ 0, 0, 0]], ["FS_07", [ 0,-1, -1]]]
|
|
71
|
+
- [["FS_02", [ 1,-1, 0]], ["FS_05", [ 0, 0, -1]]]
|
|
72
|
+
- [["FS_03", [ 0,-1, 0]], ["FS_04", [ 1, 0, -1]]]
|
|
73
|
+
|
|
74
|
+
tetrahedral_sites:
|
|
75
|
+
I:
|
|
76
|
+
- ["FS_00", [ 0, 0, 0]]
|
|
77
|
+
- ["FS_01", [ -1, 0, 0]]
|
|
78
|
+
- ["FS_02", [ 0, -1, 0]]
|
|
79
|
+
- ["FS_04", [ 0, 0, 0]]
|
|
80
|
+
J:
|
|
81
|
+
- ["FS_00", [ 0, 0, 0]]
|
|
82
|
+
- ["FS_01", [ 0, 0, 0]]
|
|
83
|
+
- ["FS_03", [ 0, -1, 0]]
|
|
84
|
+
- ["FS_05", [ 0, 0, 0]]
|
|
85
|
+
K:
|
|
86
|
+
- ["FS_00", [ 0, 0, 0]]
|
|
87
|
+
- ["FS_02", [ 0, 0, 0]]
|
|
88
|
+
- ["FS_03", [ 0, 0, 0]]
|
|
89
|
+
- ["FS_06", [ 0, 0, 0]]
|
|
90
|
+
L:
|
|
91
|
+
- ["FS_01", [ 0, 0, 0]]
|
|
92
|
+
- ["FS_02", [ 1, 0, 0]]
|
|
93
|
+
- ["FS_03", [ 0, 0, 0]]
|
|
94
|
+
- ["FS_07", [ 0, 0, 0]]
|
|
95
|
+
M:
|
|
96
|
+
- ["FS_04", [ 0, 0, -1]]
|
|
97
|
+
- ["FS_06", [ 0, 0, -1]]
|
|
98
|
+
- ["FS_05", [ 0, 0, -1]]
|
|
99
|
+
- ["FS_00", [ 0, 0, 0]]
|
|
100
|
+
N:
|
|
101
|
+
- ["FS_04", [ 1, 0, -1]]
|
|
102
|
+
- ["FS_05", [ 0, 0, -1]]
|
|
103
|
+
- ["FS_07", [ 0, 0, -1]]
|
|
104
|
+
- ["FS_01", [ 0, 0, 0]]
|
|
105
|
+
O:
|
|
106
|
+
- ["FS_04", [ 0, 1, -1]]
|
|
107
|
+
- ["FS_06", [ 0, 0, -1]]
|
|
108
|
+
- ["FS_07", [ -1, 0, -1]]
|
|
109
|
+
- ["FS_02", [ 0, 0, 0]]
|
|
110
|
+
P:
|
|
111
|
+
- ["FS_05", [ 0, 1, -1]]
|
|
112
|
+
- ["FS_06", [ 0, 0, -1]]
|
|
113
|
+
- ["FS_07", [ 0, 0, -1]]
|
|
114
|
+
- ["FS_03", [ 0, 0, 0]]
|
|
115
|
+
Q:
|
|
116
|
+
- ["FS_00", [ 0, 0, 0]]
|
|
117
|
+
- ["FS_01", [ -1, 0, 0]]
|
|
118
|
+
- ["FS_02", [ 0, -1, 0]]
|
|
119
|
+
- ["FS_04", [ 0, 0, -1]]
|
|
120
|
+
R:
|
|
121
|
+
- ["FS_00", [ 0, 0, 0]]
|
|
122
|
+
- ["FS_01", [ 0, 0, 0]]
|
|
123
|
+
- ["FS_03", [ 0, -1, 0]]
|
|
124
|
+
- ["FS_05", [ 0, 0, -1]]
|
|
125
|
+
S:
|
|
126
|
+
- ["FS_00", [ 0, 0, 0]]
|
|
127
|
+
- ["FS_02", [ 0, 0, 0]]
|
|
128
|
+
- ["FS_03", [ 0, 0, 0]]
|
|
129
|
+
- ["FS_06", [ 0, 0, -1]]
|
|
130
|
+
T:
|
|
131
|
+
- ["FS_01", [ 0, 0, 0]]
|
|
132
|
+
- ["FS_02", [ 1, 0, 0]]
|
|
133
|
+
- ["FS_03", [ 0, 0, 0]]
|
|
134
|
+
- ["FS_07", [ 0, 0, -1]]
|
|
135
|
+
U:
|
|
136
|
+
- ["FS_04", [ 0, 0, 0]]
|
|
137
|
+
- ["FS_06", [ 0, 0, 0]]
|
|
138
|
+
- ["FS_05", [ 0, 0, 0]]
|
|
139
|
+
- ["FS_00", [ 0, 0, 0]]
|
|
140
|
+
V:
|
|
141
|
+
- ["FS_04", [ 1, 0, 0]]
|
|
142
|
+
- ["FS_05", [ 0, 0, 0]]
|
|
143
|
+
- ["FS_07", [ 0, 0, 0]]
|
|
144
|
+
- ["FS_01", [ 0, 0, 0]]
|
|
145
|
+
W:
|
|
146
|
+
- ["FS_04", [ 0, 1, 0]]
|
|
147
|
+
- ["FS_06", [ 0, 0, 0]]
|
|
148
|
+
- ["FS_07", [ -1, 0, 0]]
|
|
149
|
+
- ["FS_02", [ 0, 0, 0]]
|
|
150
|
+
X:
|
|
151
|
+
- ["FS_05", [ 0, 1, 0]]
|
|
152
|
+
- ["FS_06", [ 0, 0, 0]]
|
|
153
|
+
- ["FS_07", [ 0, 0, 0]]
|
|
154
|
+
- ["FS_03", [ 0, 0, 0]]
|
data/test/helper.rb
ADDED
|
@@ -0,0 +1,17 @@
|
|
|
1
|
+
require 'rubygems'
|
|
2
|
+
require 'bundler'
|
|
3
|
+
begin
|
|
4
|
+
Bundler.setup(:default, :development)
|
|
5
|
+
rescue Bundler::BundlerError => e
|
|
6
|
+
$stderr.puts e.message
|
|
7
|
+
$stderr.puts "Run `bundle install` to install missing gems"
|
|
8
|
+
exit e.status_code
|
|
9
|
+
end
|
|
10
|
+
require 'test/unit'
|
|
11
|
+
|
|
12
|
+
$LOAD_PATH.unshift(File.dirname(__FILE__))
|
|
13
|
+
$LOAD_PATH.unshift(File.join(File.dirname(__FILE__), '..', 'lib'))
|
|
14
|
+
require 'crysna'
|
|
15
|
+
|
|
16
|
+
class Test::Unit::TestCase
|
|
17
|
+
end
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
identifysites.yaml
|
|
@@ -0,0 +1,333 @@
|
|
|
1
|
+
Checking Te_000:
|
|
2
|
+
Vertices:
|
|
3
|
+
( 0.00000, 0.00000, 0.00000)inter.
|
|
4
|
+
( 0.00000, 0.00000, 1.00000)inter.
|
|
5
|
+
( 0.00000, 1.00000, 0.00000)inter.
|
|
6
|
+
( 1.00000, 0.00000, 0.00000)inter.
|
|
7
|
+
Generating 3x3x3 periodic coordinates of atom:
|
|
8
|
+
orig = ( 0.010, 0.010, 0.010)
|
|
9
|
+
orig+(-1, -1, -1)inter. -> ( 1.010, 1.010, 1.010)cart. : Outside.
|
|
10
|
+
orig+( 0, -1, -1)inter. -> ( 0.010, 1.010, 1.010)cart. : Outside.
|
|
11
|
+
orig+( 1, -1, -1)inter. -> ( -0.990, 1.010, 1.010)cart. : Outside.
|
|
12
|
+
orig+(-1, 0, -1)inter. -> ( 1.010, 0.010, 1.010)cart. : Outside.
|
|
13
|
+
orig+( 0, 0, -1)inter. -> ( 0.010, 0.010, 1.010)cart. : Outside.
|
|
14
|
+
orig+( 1, 0, -1)inter. -> ( -0.990, 0.010, 1.010)cart. : Outside.
|
|
15
|
+
orig+(-1, 1, -1)inter. -> ( 1.010, -0.990, 1.010)cart. : Outside.
|
|
16
|
+
orig+( 0, 1, -1)inter. -> ( 0.010, -0.990, 1.010)cart. : Outside.
|
|
17
|
+
orig+( 1, 1, -1)inter. -> ( -0.990, -0.990, 1.010)cart. : Outside.
|
|
18
|
+
orig+(-1, -1, 0)inter. -> ( 1.010, 1.010, 0.010)cart. : Outside.
|
|
19
|
+
orig+( 0, -1, 0)inter. -> ( 0.010, 1.010, 0.010)cart. : Outside.
|
|
20
|
+
orig+( 1, -1, 0)inter. -> ( -0.990, 1.010, 0.010)cart. : Outside.
|
|
21
|
+
orig+(-1, 0, 0)inter. -> ( 1.010, 0.010, 0.010)cart. : Outside.
|
|
22
|
+
orig+( 0, 0, 0)inter. -> ( 0.010, 0.010, 0.010)cart. : Inside.
|
|
23
|
+
Found at atom with translation in internal vector [0, 0, 0].
|
|
24
|
+
orig+( 1, 0, 0)inter. -> ( -0.990, 0.010, 0.010)cart. : Outside.
|
|
25
|
+
orig+(-1, 1, 0)inter. -> ( 1.010, -0.990, 0.010)cart. : Outside.
|
|
26
|
+
orig+( 0, 1, 0)inter. -> ( 0.010, -0.990, 0.010)cart. : Outside.
|
|
27
|
+
orig+( 1, 1, 0)inter. -> ( -0.990, -0.990, 0.010)cart. : Outside.
|
|
28
|
+
orig+(-1, -1, 1)inter. -> ( 1.010, 1.010, -0.990)cart. : Outside.
|
|
29
|
+
orig+( 0, -1, 1)inter. -> ( 0.010, 1.010, -0.990)cart. : Outside.
|
|
30
|
+
orig+( 1, -1, 1)inter. -> ( -0.990, 1.010, -0.990)cart. : Outside.
|
|
31
|
+
orig+(-1, 0, 1)inter. -> ( 1.010, 0.010, -0.990)cart. : Outside.
|
|
32
|
+
orig+( 0, 0, 1)inter. -> ( 0.010, 0.010, -0.990)cart. : Outside.
|
|
33
|
+
orig+( 1, 0, 1)inter. -> ( -0.990, 0.010, -0.990)cart. : Outside.
|
|
34
|
+
orig+(-1, 1, 1)inter. -> ( 1.010, -0.990, -0.990)cart. : Outside.
|
|
35
|
+
orig+( 0, 1, 1)inter. -> ( 0.010, -0.990, -0.990)cart. : Outside.
|
|
36
|
+
orig+( 1, 1, 1)inter. -> ( -0.990, -0.990, -0.990)cart. : Outside.
|
|
37
|
+
|
|
38
|
+
Checking Te_001:
|
|
39
|
+
Vertices:
|
|
40
|
+
( 1.00000, 1.00000, 1.00000)inter.
|
|
41
|
+
( 1.00000, 1.00000, 0.00000)inter.
|
|
42
|
+
( 1.00000, 0.00000, 1.00000)inter.
|
|
43
|
+
( 0.00000, 1.00000, 1.00000)inter.
|
|
44
|
+
Generating 3x3x3 periodic coordinates of atom:
|
|
45
|
+
orig = ( 0.010, 0.010, 0.010)
|
|
46
|
+
orig+(-1, -1, -1)inter. -> ( 1.010, 1.010, 1.010)cart. : Outside.
|
|
47
|
+
orig+( 0, -1, -1)inter. -> ( 0.010, 1.010, 1.010)cart. : Outside.
|
|
48
|
+
orig+( 1, -1, -1)inter. -> ( -0.990, 1.010, 1.010)cart. : Outside.
|
|
49
|
+
orig+(-1, 0, -1)inter. -> ( 1.010, 0.010, 1.010)cart. : Outside.
|
|
50
|
+
orig+( 0, 0, -1)inter. -> ( 0.010, 0.010, 1.010)cart. : Outside.
|
|
51
|
+
orig+( 1, 0, -1)inter. -> ( -0.990, 0.010, 1.010)cart. : Outside.
|
|
52
|
+
orig+(-1, 1, -1)inter. -> ( 1.010, -0.990, 1.010)cart. : Outside.
|
|
53
|
+
orig+( 0, 1, -1)inter. -> ( 0.010, -0.990, 1.010)cart. : Outside.
|
|
54
|
+
orig+( 1, 1, -1)inter. -> ( -0.990, -0.990, 1.010)cart. : Outside.
|
|
55
|
+
orig+(-1, -1, 0)inter. -> ( 1.010, 1.010, 0.010)cart. : Outside.
|
|
56
|
+
orig+( 0, -1, 0)inter. -> ( 0.010, 1.010, 0.010)cart. : Outside.
|
|
57
|
+
orig+( 1, -1, 0)inter. -> ( -0.990, 1.010, 0.010)cart. : Outside.
|
|
58
|
+
orig+(-1, 0, 0)inter. -> ( 1.010, 0.010, 0.010)cart. : Outside.
|
|
59
|
+
orig+( 0, 0, 0)inter. -> ( 0.010, 0.010, 0.010)cart. : Outside.
|
|
60
|
+
orig+( 1, 0, 0)inter. -> ( -0.990, 0.010, 0.010)cart. : Outside.
|
|
61
|
+
orig+(-1, 1, 0)inter. -> ( 1.010, -0.990, 0.010)cart. : Outside.
|
|
62
|
+
orig+( 0, 1, 0)inter. -> ( 0.010, -0.990, 0.010)cart. : Outside.
|
|
63
|
+
orig+( 1, 1, 0)inter. -> ( -0.990, -0.990, 0.010)cart. : Outside.
|
|
64
|
+
orig+(-1, -1, 1)inter. -> ( 1.010, 1.010, -0.990)cart. : Outside.
|
|
65
|
+
orig+( 0, -1, 1)inter. -> ( 0.010, 1.010, -0.990)cart. : Outside.
|
|
66
|
+
orig+( 1, -1, 1)inter. -> ( -0.990, 1.010, -0.990)cart. : Outside.
|
|
67
|
+
orig+(-1, 0, 1)inter. -> ( 1.010, 0.010, -0.990)cart. : Outside.
|
|
68
|
+
orig+( 0, 0, 1)inter. -> ( 0.010, 0.010, -0.990)cart. : Outside.
|
|
69
|
+
orig+( 1, 0, 1)inter. -> ( -0.990, 0.010, -0.990)cart. : Outside.
|
|
70
|
+
orig+(-1, 1, 1)inter. -> ( 1.010, -0.990, -0.990)cart. : Outside.
|
|
71
|
+
orig+( 0, 1, 1)inter. -> ( 0.010, -0.990, -0.990)cart. : Outside.
|
|
72
|
+
orig+( 1, 1, 1)inter. -> ( -0.990, -0.990, -0.990)cart. : Outside.
|
|
73
|
+
|
|
74
|
+
Checking Oc_000:
|
|
75
|
+
Vertices:
|
|
76
|
+
( 0.00000, 0.00000, 1.00000)inter.
|
|
77
|
+
( 1.00000, 1.00000, 0.00000)inter.
|
|
78
|
+
( 0.00000, 1.00000, 0.00000)inter.
|
|
79
|
+
( 1.00000, 0.00000, 1.00000)inter.
|
|
80
|
+
( 1.00000, 0.00000, 0.00000)inter.
|
|
81
|
+
( 0.00000, 1.00000, 1.00000)inter.
|
|
82
|
+
Generating 3x3x3 periodic coordinates of atom:
|
|
83
|
+
orig = ( 0.010, 0.010, 0.010)
|
|
84
|
+
orig+(-1, -1, -1)inter. -> ( 1.010, 1.010, 1.010)cart. : Outside.
|
|
85
|
+
orig+( 0, -1, -1)inter. -> ( 0.010, 1.010, 1.010)cart. : Outside.
|
|
86
|
+
orig+( 1, -1, -1)inter. -> ( -0.990, 1.010, 1.010)cart. : Outside.
|
|
87
|
+
orig+(-1, 0, -1)inter. -> ( 1.010, 0.010, 1.010)cart. : Outside.
|
|
88
|
+
orig+( 0, 0, -1)inter. -> ( 0.010, 0.010, 1.010)cart. : Outside.
|
|
89
|
+
orig+( 1, 0, -1)inter. -> ( -0.990, 0.010, 1.010)cart. : Outside.
|
|
90
|
+
orig+(-1, 1, -1)inter. -> ( 1.010, -0.990, 1.010)cart. : Outside.
|
|
91
|
+
orig+( 0, 1, -1)inter. -> ( 0.010, -0.990, 1.010)cart. : Outside.
|
|
92
|
+
orig+( 1, 1, -1)inter. -> ( -0.990, -0.990, 1.010)cart. : Outside.
|
|
93
|
+
orig+(-1, -1, 0)inter. -> ( 1.010, 1.010, 0.010)cart. : Outside.
|
|
94
|
+
orig+( 0, -1, 0)inter. -> ( 0.010, 1.010, 0.010)cart. : Outside.
|
|
95
|
+
orig+( 1, -1, 0)inter. -> ( -0.990, 1.010, 0.010)cart. : Outside.
|
|
96
|
+
orig+(-1, 0, 0)inter. -> ( 1.010, 0.010, 0.010)cart. : Outside.
|
|
97
|
+
orig+( 0, 0, 0)inter. -> ( 0.010, 0.010, 0.010)cart. : Outside.
|
|
98
|
+
orig+( 1, 0, 0)inter. -> ( -0.990, 0.010, 0.010)cart. : Outside.
|
|
99
|
+
orig+(-1, 1, 0)inter. -> ( 1.010, -0.990, 0.010)cart. : Outside.
|
|
100
|
+
orig+( 0, 1, 0)inter. -> ( 0.010, -0.990, 0.010)cart. : Outside.
|
|
101
|
+
orig+( 1, 1, 0)inter. -> ( -0.990, -0.990, 0.010)cart. : Outside.
|
|
102
|
+
orig+(-1, -1, 1)inter. -> ( 1.010, 1.010, -0.990)cart. : Outside.
|
|
103
|
+
orig+( 0, -1, 1)inter. -> ( 0.010, 1.010, -0.990)cart. : Outside.
|
|
104
|
+
orig+( 1, -1, 1)inter. -> ( -0.990, 1.010, -0.990)cart. : Outside.
|
|
105
|
+
orig+(-1, 0, 1)inter. -> ( 1.010, 0.010, -0.990)cart. : Outside.
|
|
106
|
+
orig+( 0, 0, 1)inter. -> ( 0.010, 0.010, -0.990)cart. : Outside.
|
|
107
|
+
orig+( 1, 0, 1)inter. -> ( -0.990, 0.010, -0.990)cart. : Outside.
|
|
108
|
+
orig+(-1, 1, 1)inter. -> ( 1.010, -0.990, -0.990)cart. : Outside.
|
|
109
|
+
orig+( 0, 1, 1)inter. -> ( 0.010, -0.990, -0.990)cart. : Outside.
|
|
110
|
+
orig+( 1, 1, 1)inter. -> ( -0.990, -0.990, -0.990)cart. : Outside.
|
|
111
|
+
|
|
112
|
+
Checking Te_000:
|
|
113
|
+
Vertices:
|
|
114
|
+
( 0.00000, 0.00000, 0.00000)inter.
|
|
115
|
+
( 0.00000, 0.00000, 1.00000)inter.
|
|
116
|
+
( 0.00000, 1.00000, 0.00000)inter.
|
|
117
|
+
( 1.00000, 0.00000, 0.00000)inter.
|
|
118
|
+
Generating 3x3x3 periodic coordinates of atom:
|
|
119
|
+
orig = ( 0.900, 0.900, 0.900)
|
|
120
|
+
orig+(-1, -1, -1)inter. -> ( 1.900, 1.900, 1.900)cart. : Outside.
|
|
121
|
+
orig+( 0, -1, -1)inter. -> ( 0.900, 1.900, 1.900)cart. : Outside.
|
|
122
|
+
orig+( 1, -1, -1)inter. -> ( -0.100, 1.900, 1.900)cart. : Outside.
|
|
123
|
+
orig+(-1, 0, -1)inter. -> ( 1.900, 0.900, 1.900)cart. : Outside.
|
|
124
|
+
orig+( 0, 0, -1)inter. -> ( 0.900, 0.900, 1.900)cart. : Outside.
|
|
125
|
+
orig+( 1, 0, -1)inter. -> ( -0.100, 0.900, 1.900)cart. : Outside.
|
|
126
|
+
orig+(-1, 1, -1)inter. -> ( 1.900, -0.100, 1.900)cart. : Outside.
|
|
127
|
+
orig+( 0, 1, -1)inter. -> ( 0.900, -0.100, 1.900)cart. : Outside.
|
|
128
|
+
orig+( 1, 1, -1)inter. -> ( -0.100, -0.100, 1.900)cart. : Outside.
|
|
129
|
+
orig+(-1, -1, 0)inter. -> ( 1.900, 1.900, 0.900)cart. : Outside.
|
|
130
|
+
orig+( 0, -1, 0)inter. -> ( 0.900, 1.900, 0.900)cart. : Outside.
|
|
131
|
+
orig+( 1, -1, 0)inter. -> ( -0.100, 1.900, 0.900)cart. : Outside.
|
|
132
|
+
orig+(-1, 0, 0)inter. -> ( 1.900, 0.900, 0.900)cart. : Outside.
|
|
133
|
+
orig+( 0, 0, 0)inter. -> ( 0.900, 0.900, 0.900)cart. : Outside.
|
|
134
|
+
orig+( 1, 0, 0)inter. -> ( -0.100, 0.900, 0.900)cart. : Outside.
|
|
135
|
+
orig+(-1, 1, 0)inter. -> ( 1.900, -0.100, 0.900)cart. : Outside.
|
|
136
|
+
orig+( 0, 1, 0)inter. -> ( 0.900, -0.100, 0.900)cart. : Outside.
|
|
137
|
+
orig+( 1, 1, 0)inter. -> ( -0.100, -0.100, 0.900)cart. : Outside.
|
|
138
|
+
orig+(-1, -1, 1)inter. -> ( 1.900, 1.900, -0.100)cart. : Outside.
|
|
139
|
+
orig+( 0, -1, 1)inter. -> ( 0.900, 1.900, -0.100)cart. : Outside.
|
|
140
|
+
orig+( 1, -1, 1)inter. -> ( -0.100, 1.900, -0.100)cart. : Outside.
|
|
141
|
+
orig+(-1, 0, 1)inter. -> ( 1.900, 0.900, -0.100)cart. : Outside.
|
|
142
|
+
orig+( 0, 0, 1)inter. -> ( 0.900, 0.900, -0.100)cart. : Outside.
|
|
143
|
+
orig+( 1, 0, 1)inter. -> ( -0.100, 0.900, -0.100)cart. : Outside.
|
|
144
|
+
orig+(-1, 1, 1)inter. -> ( 1.900, -0.100, -0.100)cart. : Outside.
|
|
145
|
+
orig+( 0, 1, 1)inter. -> ( 0.900, -0.100, -0.100)cart. : Outside.
|
|
146
|
+
orig+( 1, 1, 1)inter. -> ( -0.100, -0.100, -0.100)cart. : Outside.
|
|
147
|
+
|
|
148
|
+
Checking Te_001:
|
|
149
|
+
Vertices:
|
|
150
|
+
( 1.00000, 1.00000, 1.00000)inter.
|
|
151
|
+
( 1.00000, 1.00000, 0.00000)inter.
|
|
152
|
+
( 1.00000, 0.00000, 1.00000)inter.
|
|
153
|
+
( 0.00000, 1.00000, 1.00000)inter.
|
|
154
|
+
Generating 3x3x3 periodic coordinates of atom:
|
|
155
|
+
orig = ( 0.900, 0.900, 0.900)
|
|
156
|
+
orig+(-1, -1, -1)inter. -> ( 1.900, 1.900, 1.900)cart. : Outside.
|
|
157
|
+
orig+( 0, -1, -1)inter. -> ( 0.900, 1.900, 1.900)cart. : Outside.
|
|
158
|
+
orig+( 1, -1, -1)inter. -> ( -0.100, 1.900, 1.900)cart. : Outside.
|
|
159
|
+
orig+(-1, 0, -1)inter. -> ( 1.900, 0.900, 1.900)cart. : Outside.
|
|
160
|
+
orig+( 0, 0, -1)inter. -> ( 0.900, 0.900, 1.900)cart. : Outside.
|
|
161
|
+
orig+( 1, 0, -1)inter. -> ( -0.100, 0.900, 1.900)cart. : Outside.
|
|
162
|
+
orig+(-1, 1, -1)inter. -> ( 1.900, -0.100, 1.900)cart. : Outside.
|
|
163
|
+
orig+( 0, 1, -1)inter. -> ( 0.900, -0.100, 1.900)cart. : Outside.
|
|
164
|
+
orig+( 1, 1, -1)inter. -> ( -0.100, -0.100, 1.900)cart. : Outside.
|
|
165
|
+
orig+(-1, -1, 0)inter. -> ( 1.900, 1.900, 0.900)cart. : Outside.
|
|
166
|
+
orig+( 0, -1, 0)inter. -> ( 0.900, 1.900, 0.900)cart. : Outside.
|
|
167
|
+
orig+( 1, -1, 0)inter. -> ( -0.100, 1.900, 0.900)cart. : Outside.
|
|
168
|
+
orig+(-1, 0, 0)inter. -> ( 1.900, 0.900, 0.900)cart. : Outside.
|
|
169
|
+
orig+( 0, 0, 0)inter. -> ( 0.900, 0.900, 0.900)cart. : Inside.
|
|
170
|
+
Found at atom with translation in internal vector [0, 0, 0].
|
|
171
|
+
orig+( 1, 0, 0)inter. -> ( -0.100, 0.900, 0.900)cart. : Outside.
|
|
172
|
+
orig+(-1, 1, 0)inter. -> ( 1.900, -0.100, 0.900)cart. : Outside.
|
|
173
|
+
orig+( 0, 1, 0)inter. -> ( 0.900, -0.100, 0.900)cart. : Outside.
|
|
174
|
+
orig+( 1, 1, 0)inter. -> ( -0.100, -0.100, 0.900)cart. : Outside.
|
|
175
|
+
orig+(-1, -1, 1)inter. -> ( 1.900, 1.900, -0.100)cart. : Outside.
|
|
176
|
+
orig+( 0, -1, 1)inter. -> ( 0.900, 1.900, -0.100)cart. : Outside.
|
|
177
|
+
orig+( 1, -1, 1)inter. -> ( -0.100, 1.900, -0.100)cart. : Outside.
|
|
178
|
+
orig+(-1, 0, 1)inter. -> ( 1.900, 0.900, -0.100)cart. : Outside.
|
|
179
|
+
orig+( 0, 0, 1)inter. -> ( 0.900, 0.900, -0.100)cart. : Outside.
|
|
180
|
+
orig+( 1, 0, 1)inter. -> ( -0.100, 0.900, -0.100)cart. : Outside.
|
|
181
|
+
orig+(-1, 1, 1)inter. -> ( 1.900, -0.100, -0.100)cart. : Outside.
|
|
182
|
+
orig+( 0, 1, 1)inter. -> ( 0.900, -0.100, -0.100)cart. : Outside.
|
|
183
|
+
orig+( 1, 1, 1)inter. -> ( -0.100, -0.100, -0.100)cart. : Outside.
|
|
184
|
+
|
|
185
|
+
Checking Oc_000:
|
|
186
|
+
Vertices:
|
|
187
|
+
( 0.00000, 0.00000, 1.00000)inter.
|
|
188
|
+
( 1.00000, 1.00000, 0.00000)inter.
|
|
189
|
+
( 0.00000, 1.00000, 0.00000)inter.
|
|
190
|
+
( 1.00000, 0.00000, 1.00000)inter.
|
|
191
|
+
( 1.00000, 0.00000, 0.00000)inter.
|
|
192
|
+
( 0.00000, 1.00000, 1.00000)inter.
|
|
193
|
+
Generating 3x3x3 periodic coordinates of atom:
|
|
194
|
+
orig = ( 0.900, 0.900, 0.900)
|
|
195
|
+
orig+(-1, -1, -1)inter. -> ( 1.900, 1.900, 1.900)cart. : Outside.
|
|
196
|
+
orig+( 0, -1, -1)inter. -> ( 0.900, 1.900, 1.900)cart. : Outside.
|
|
197
|
+
orig+( 1, -1, -1)inter. -> ( -0.100, 1.900, 1.900)cart. : Outside.
|
|
198
|
+
orig+(-1, 0, -1)inter. -> ( 1.900, 0.900, 1.900)cart. : Outside.
|
|
199
|
+
orig+( 0, 0, -1)inter. -> ( 0.900, 0.900, 1.900)cart. : Outside.
|
|
200
|
+
orig+( 1, 0, -1)inter. -> ( -0.100, 0.900, 1.900)cart. : Outside.
|
|
201
|
+
orig+(-1, 1, -1)inter. -> ( 1.900, -0.100, 1.900)cart. : Outside.
|
|
202
|
+
orig+( 0, 1, -1)inter. -> ( 0.900, -0.100, 1.900)cart. : Outside.
|
|
203
|
+
orig+( 1, 1, -1)inter. -> ( -0.100, -0.100, 1.900)cart. : Outside.
|
|
204
|
+
orig+(-1, -1, 0)inter. -> ( 1.900, 1.900, 0.900)cart. : Outside.
|
|
205
|
+
orig+( 0, -1, 0)inter. -> ( 0.900, 1.900, 0.900)cart. : Outside.
|
|
206
|
+
orig+( 1, -1, 0)inter. -> ( -0.100, 1.900, 0.900)cart. : Outside.
|
|
207
|
+
orig+(-1, 0, 0)inter. -> ( 1.900, 0.900, 0.900)cart. : Outside.
|
|
208
|
+
orig+( 0, 0, 0)inter. -> ( 0.900, 0.900, 0.900)cart. : Outside.
|
|
209
|
+
orig+( 1, 0, 0)inter. -> ( -0.100, 0.900, 0.900)cart. : Outside.
|
|
210
|
+
orig+(-1, 1, 0)inter. -> ( 1.900, -0.100, 0.900)cart. : Outside.
|
|
211
|
+
orig+( 0, 1, 0)inter. -> ( 0.900, -0.100, 0.900)cart. : Outside.
|
|
212
|
+
orig+( 1, 1, 0)inter. -> ( -0.100, -0.100, 0.900)cart. : Outside.
|
|
213
|
+
orig+(-1, -1, 1)inter. -> ( 1.900, 1.900, -0.100)cart. : Outside.
|
|
214
|
+
orig+( 0, -1, 1)inter. -> ( 0.900, 1.900, -0.100)cart. : Outside.
|
|
215
|
+
orig+( 1, -1, 1)inter. -> ( -0.100, 1.900, -0.100)cart. : Outside.
|
|
216
|
+
orig+(-1, 0, 1)inter. -> ( 1.900, 0.900, -0.100)cart. : Outside.
|
|
217
|
+
orig+( 0, 0, 1)inter. -> ( 0.900, 0.900, -0.100)cart. : Outside.
|
|
218
|
+
orig+( 1, 0, 1)inter. -> ( -0.100, 0.900, -0.100)cart. : Outside.
|
|
219
|
+
orig+(-1, 1, 1)inter. -> ( 1.900, -0.100, -0.100)cart. : Outside.
|
|
220
|
+
orig+( 0, 1, 1)inter. -> ( 0.900, -0.100, -0.100)cart. : Outside.
|
|
221
|
+
orig+( 1, 1, 1)inter. -> ( -0.100, -0.100, -0.100)cart. : Outside.
|
|
222
|
+
|
|
223
|
+
Checking Te_000:
|
|
224
|
+
Vertices:
|
|
225
|
+
( 0.00000, 0.00000, 0.00000)inter.
|
|
226
|
+
( 0.00000, 0.00000, 1.00000)inter.
|
|
227
|
+
( 0.00000, 1.00000, 0.00000)inter.
|
|
228
|
+
( 1.00000, 0.00000, 0.00000)inter.
|
|
229
|
+
Generating 3x3x3 periodic coordinates of atom:
|
|
230
|
+
orig = ( 0.100, 0.100, 0.100)
|
|
231
|
+
orig+(-1, -1, -1)inter. -> ( 1.100, 1.100, 1.100)cart. : Outside.
|
|
232
|
+
orig+( 0, -1, -1)inter. -> ( 0.100, 1.100, 1.100)cart. : Outside.
|
|
233
|
+
orig+( 1, -1, -1)inter. -> ( -0.900, 1.100, 1.100)cart. : Outside.
|
|
234
|
+
orig+(-1, 0, -1)inter. -> ( 1.100, 0.100, 1.100)cart. : Outside.
|
|
235
|
+
orig+( 0, 0, -1)inter. -> ( 0.100, 0.100, 1.100)cart. : Outside.
|
|
236
|
+
orig+( 1, 0, -1)inter. -> ( -0.900, 0.100, 1.100)cart. : Outside.
|
|
237
|
+
orig+(-1, 1, -1)inter. -> ( 1.100, -0.900, 1.100)cart. : Outside.
|
|
238
|
+
orig+( 0, 1, -1)inter. -> ( 0.100, -0.900, 1.100)cart. : Outside.
|
|
239
|
+
orig+( 1, 1, -1)inter. -> ( -0.900, -0.900, 1.100)cart. : Outside.
|
|
240
|
+
orig+(-1, -1, 0)inter. -> ( 1.100, 1.100, 0.100)cart. : Outside.
|
|
241
|
+
orig+( 0, -1, 0)inter. -> ( 0.100, 1.100, 0.100)cart. : Outside.
|
|
242
|
+
orig+( 1, -1, 0)inter. -> ( -0.900, 1.100, 0.100)cart. : Outside.
|
|
243
|
+
orig+(-1, 0, 0)inter. -> ( 1.100, 0.100, 0.100)cart. : Outside.
|
|
244
|
+
orig+( 0, 0, 0)inter. -> ( 0.100, 0.100, 0.100)cart. : Inside.
|
|
245
|
+
Found at atom with translation in internal vector [0, 0, 0].
|
|
246
|
+
orig+( 1, 0, 0)inter. -> ( -0.900, 0.100, 0.100)cart. : Outside.
|
|
247
|
+
orig+(-1, 1, 0)inter. -> ( 1.100, -0.900, 0.100)cart. : Outside.
|
|
248
|
+
orig+( 0, 1, 0)inter. -> ( 0.100, -0.900, 0.100)cart. : Outside.
|
|
249
|
+
orig+( 1, 1, 0)inter. -> ( -0.900, -0.900, 0.100)cart. : Outside.
|
|
250
|
+
orig+(-1, -1, 1)inter. -> ( 1.100, 1.100, -0.900)cart. : Outside.
|
|
251
|
+
orig+( 0, -1, 1)inter. -> ( 0.100, 1.100, -0.900)cart. : Outside.
|
|
252
|
+
orig+( 1, -1, 1)inter. -> ( -0.900, 1.100, -0.900)cart. : Outside.
|
|
253
|
+
orig+(-1, 0, 1)inter. -> ( 1.100, 0.100, -0.900)cart. : Outside.
|
|
254
|
+
orig+( 0, 0, 1)inter. -> ( 0.100, 0.100, -0.900)cart. : Outside.
|
|
255
|
+
orig+( 1, 0, 1)inter. -> ( -0.900, 0.100, -0.900)cart. : Outside.
|
|
256
|
+
orig+(-1, 1, 1)inter. -> ( 1.100, -0.900, -0.900)cart. : Outside.
|
|
257
|
+
orig+( 0, 1, 1)inter. -> ( 0.100, -0.900, -0.900)cart. : Outside.
|
|
258
|
+
orig+( 1, 1, 1)inter. -> ( -0.900, -0.900, -0.900)cart. : Outside.
|
|
259
|
+
|
|
260
|
+
Checking Te_001:
|
|
261
|
+
Vertices:
|
|
262
|
+
( 1.00000, 1.00000, 1.00000)inter.
|
|
263
|
+
( 1.00000, 1.00000, 0.00000)inter.
|
|
264
|
+
( 1.00000, 0.00000, 1.00000)inter.
|
|
265
|
+
( 0.00000, 1.00000, 1.00000)inter.
|
|
266
|
+
Generating 3x3x3 periodic coordinates of atom:
|
|
267
|
+
orig = ( 0.100, 0.100, 0.100)
|
|
268
|
+
orig+(-1, -1, -1)inter. -> ( 1.100, 1.100, 1.100)cart. : Outside.
|
|
269
|
+
orig+( 0, -1, -1)inter. -> ( 0.100, 1.100, 1.100)cart. : Outside.
|
|
270
|
+
orig+( 1, -1, -1)inter. -> ( -0.900, 1.100, 1.100)cart. : Outside.
|
|
271
|
+
orig+(-1, 0, -1)inter. -> ( 1.100, 0.100, 1.100)cart. : Outside.
|
|
272
|
+
orig+( 0, 0, -1)inter. -> ( 0.100, 0.100, 1.100)cart. : Outside.
|
|
273
|
+
orig+( 1, 0, -1)inter. -> ( -0.900, 0.100, 1.100)cart. : Outside.
|
|
274
|
+
orig+(-1, 1, -1)inter. -> ( 1.100, -0.900, 1.100)cart. : Outside.
|
|
275
|
+
orig+( 0, 1, -1)inter. -> ( 0.100, -0.900, 1.100)cart. : Outside.
|
|
276
|
+
orig+( 1, 1, -1)inter. -> ( -0.900, -0.900, 1.100)cart. : Outside.
|
|
277
|
+
orig+(-1, -1, 0)inter. -> ( 1.100, 1.100, 0.100)cart. : Outside.
|
|
278
|
+
orig+( 0, -1, 0)inter. -> ( 0.100, 1.100, 0.100)cart. : Outside.
|
|
279
|
+
orig+( 1, -1, 0)inter. -> ( -0.900, 1.100, 0.100)cart. : Outside.
|
|
280
|
+
orig+(-1, 0, 0)inter. -> ( 1.100, 0.100, 0.100)cart. : Outside.
|
|
281
|
+
orig+( 0, 0, 0)inter. -> ( 0.100, 0.100, 0.100)cart. : Outside.
|
|
282
|
+
orig+( 1, 0, 0)inter. -> ( -0.900, 0.100, 0.100)cart. : Outside.
|
|
283
|
+
orig+(-1, 1, 0)inter. -> ( 1.100, -0.900, 0.100)cart. : Outside.
|
|
284
|
+
orig+( 0, 1, 0)inter. -> ( 0.100, -0.900, 0.100)cart. : Outside.
|
|
285
|
+
orig+( 1, 1, 0)inter. -> ( -0.900, -0.900, 0.100)cart. : Outside.
|
|
286
|
+
orig+(-1, -1, 1)inter. -> ( 1.100, 1.100, -0.900)cart. : Outside.
|
|
287
|
+
orig+( 0, -1, 1)inter. -> ( 0.100, 1.100, -0.900)cart. : Outside.
|
|
288
|
+
orig+( 1, -1, 1)inter. -> ( -0.900, 1.100, -0.900)cart. : Outside.
|
|
289
|
+
orig+(-1, 0, 1)inter. -> ( 1.100, 0.100, -0.900)cart. : Outside.
|
|
290
|
+
orig+( 0, 0, 1)inter. -> ( 0.100, 0.100, -0.900)cart. : Outside.
|
|
291
|
+
orig+( 1, 0, 1)inter. -> ( -0.900, 0.100, -0.900)cart. : Outside.
|
|
292
|
+
orig+(-1, 1, 1)inter. -> ( 1.100, -0.900, -0.900)cart. : Outside.
|
|
293
|
+
orig+( 0, 1, 1)inter. -> ( 0.100, -0.900, -0.900)cart. : Outside.
|
|
294
|
+
orig+( 1, 1, 1)inter. -> ( -0.900, -0.900, -0.900)cart. : Outside.
|
|
295
|
+
|
|
296
|
+
Checking Oc_000:
|
|
297
|
+
Vertices:
|
|
298
|
+
( 0.00000, 0.00000, 1.00000)inter.
|
|
299
|
+
( 1.00000, 1.00000, 0.00000)inter.
|
|
300
|
+
( 0.00000, 1.00000, 0.00000)inter.
|
|
301
|
+
( 1.00000, 0.00000, 1.00000)inter.
|
|
302
|
+
( 1.00000, 0.00000, 0.00000)inter.
|
|
303
|
+
( 0.00000, 1.00000, 1.00000)inter.
|
|
304
|
+
Generating 3x3x3 periodic coordinates of atom:
|
|
305
|
+
orig = ( 0.100, 0.100, 0.100)
|
|
306
|
+
orig+(-1, -1, -1)inter. -> ( 1.100, 1.100, 1.100)cart. : Outside.
|
|
307
|
+
orig+( 0, -1, -1)inter. -> ( 0.100, 1.100, 1.100)cart. : Outside.
|
|
308
|
+
orig+( 1, -1, -1)inter. -> ( -0.900, 1.100, 1.100)cart. : Outside.
|
|
309
|
+
orig+(-1, 0, -1)inter. -> ( 1.100, 0.100, 1.100)cart. : Outside.
|
|
310
|
+
orig+( 0, 0, -1)inter. -> ( 0.100, 0.100, 1.100)cart. : Outside.
|
|
311
|
+
orig+( 1, 0, -1)inter. -> ( -0.900, 0.100, 1.100)cart. : Outside.
|
|
312
|
+
orig+(-1, 1, -1)inter. -> ( 1.100, -0.900, 1.100)cart. : Outside.
|
|
313
|
+
orig+( 0, 1, -1)inter. -> ( 0.100, -0.900, 1.100)cart. : Outside.
|
|
314
|
+
orig+( 1, 1, -1)inter. -> ( -0.900, -0.900, 1.100)cart. : Outside.
|
|
315
|
+
orig+(-1, -1, 0)inter. -> ( 1.100, 1.100, 0.100)cart. : Outside.
|
|
316
|
+
orig+( 0, -1, 0)inter. -> ( 0.100, 1.100, 0.100)cart. : Outside.
|
|
317
|
+
orig+( 1, -1, 0)inter. -> ( -0.900, 1.100, 0.100)cart. : Outside.
|
|
318
|
+
orig+(-1, 0, 0)inter. -> ( 1.100, 0.100, 0.100)cart. : Outside.
|
|
319
|
+
orig+( 0, 0, 0)inter. -> ( 0.100, 0.100, 0.100)cart. : Outside.
|
|
320
|
+
orig+( 1, 0, 0)inter. -> ( -0.900, 0.100, 0.100)cart. : Outside.
|
|
321
|
+
orig+(-1, 1, 0)inter. -> ( 1.100, -0.900, 0.100)cart. : Outside.
|
|
322
|
+
orig+( 0, 1, 0)inter. -> ( 0.100, -0.900, 0.100)cart. : Outside.
|
|
323
|
+
orig+( 1, 1, 0)inter. -> ( -0.900, -0.900, 0.100)cart. : Outside.
|
|
324
|
+
orig+(-1, -1, 1)inter. -> ( 1.100, 1.100, -0.900)cart. : Outside.
|
|
325
|
+
orig+( 0, -1, 1)inter. -> ( 0.100, 1.100, -0.900)cart. : Outside.
|
|
326
|
+
orig+( 1, -1, 1)inter. -> ( -0.900, 1.100, -0.900)cart. : Outside.
|
|
327
|
+
orig+(-1, 0, 1)inter. -> ( 1.100, 0.100, -0.900)cart. : Outside.
|
|
328
|
+
orig+( 0, 0, 1)inter. -> ( 0.100, 0.100, -0.900)cart. : Outside.
|
|
329
|
+
orig+( 1, 0, 1)inter. -> ( -0.900, 0.100, -0.900)cart. : Outside.
|
|
330
|
+
orig+(-1, 1, 1)inter. -> ( 1.100, -0.900, -0.900)cart. : Outside.
|
|
331
|
+
orig+( 0, 1, 1)inter. -> ( 0.100, -0.900, -0.900)cart. : Outside.
|
|
332
|
+
orig+( 1, 1, 1)inter. -> ( -0.900, -0.900, -0.900)cart. : Outside.
|
|
333
|
+
|