crb-blast 0.4.3 → 0.5.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/bin/crb-blast +2 -1
- data/crb-blast.gemspec +8 -5
- data/lib/crb-blast/crb-blast.rb +1 -1
- data/lib/crb-blast/version.rb +12 -0
- data/lib/crb-blast.rb +2 -1
- metadata +19 -12
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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---
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SHA1:
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metadata.gz:
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data.tar.gz:
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metadata.gz: f89145eb1bb4b80cc97d2e31ea2c3ea0607c0e97
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data.tar.gz: 7b4e48dc974fbec26342d47ddb5080d4b51b2aee
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 73ff1b0f0598d988db1b2cea4cb825195ba895c083db6bdc101fc42c178935ae37a7699f08925c471e48d65b4ea59d03f852bb0bd8fe26db8f7dec2cf85abc25
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data.tar.gz: 08676fab1f78f3e2db3196283c1ff6f467f3af5d0d9112901f5c8b959639a4e6b6035d2673abd258ab77219821a69e0e2f51aaffd1ad4c119ccb931b095b96d7
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data/bin/crb-blast
CHANGED
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@@ -9,9 +9,10 @@ require 'crb-blast'
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require 'bindeps'
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opts = Trollop::options do
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version CRB_Blast::VERSION::STRING.dup
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banner <<-EOS
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CRB-Blast
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CRB-Blast v#{CRB_Blast::VERSION::STRING.dup} by Chris Boursnell <cmb211@cam.ac.uk>
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Conditional Reciprocal Best BLAST
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data/crb-blast.gemspec
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@@ -1,7 +1,10 @@
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require File.expand_path('../lib/crb-blast/version', __FILE__)
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Gem::Specification.new do |gem|
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gem.name = 'crb-blast'
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gem.version =
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gem.date = '2014-07
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gem.version = CRB_Blast::VERSION::STRING.dup
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gem.date = '2014-12-07'
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gem.summary = "Run conditional reciprocal best blast"
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gem.description = "See summary"
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gem.authors = ["Chris Boursnell", "Richard Smith-Unna"]
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@@ -9,14 +12,14 @@ Gem::Specification.new do |gem|
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gem.files = `git ls-files`.split("\n")
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gem.executables = ["crb-blast"]
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gem.require_paths = %w( lib )
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gem.homepage = '
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gem.homepage = 'https://github.com/cboursnell/crb-blast'
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gem.license = 'MIT'
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gem.add_dependency 'trollop', '~> 2.0'
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gem.add_dependency 'bio', '~> 1.4', '>= 1.4.3'
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gem.add_dependency '
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gem.add_dependency 'fixwhich', '~> 1.0', '>= 1.0.2'
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gem.add_dependency 'threach', '~> 0.2', '>= 0.2.0'
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gem.add_dependency 'bindeps', '~> 0
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gem.add_dependency 'bindeps', '~> 1.0', '>= 1.0.1'
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gem.add_development_dependency 'rake', '~> 10.3', '>= 10.3.2'
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gem.add_development_dependency 'turn', '~> 0.9', '>= 0.9.7'
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data/lib/crb-blast/crb-blast.rb
CHANGED
data/lib/crb-blast.rb
CHANGED
metadata
CHANGED
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@@ -1,7 +1,7 @@
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--- !ruby/object:Gem::Specification
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name: crb-blast
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version: !ruby/object:Gem::Version
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version: 0.
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version: 0.5.0
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platform: ruby
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authors:
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- Chris Boursnell
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2014-07
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date: 2014-12-07 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: trollop
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- !ruby/object:Gem::Version
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version: 1.4.3
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- !ruby/object:Gem::Dependency
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name:
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name: fixwhich
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- -
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- - "~>"
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- !ruby/object:Gem::Version
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version: '1.0'
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- - ">="
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- !ruby/object:Gem::Version
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version:
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version: 1.0.2
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- -
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- - "~>"
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- !ruby/object:Gem::Version
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version: '1.0'
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- - ">="
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- !ruby/object:Gem::Version
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version:
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version: 1.0.2
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- !ruby/object:Gem::Dependency
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name: threach
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requirement: !ruby/object:Gem::Requirement
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@@ -85,20 +91,20 @@ dependencies:
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '0
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version: '1.0'
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- - ">="
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version: 0.1
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version: 1.0.1
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '0
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version: '1.0'
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- - ">="
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- !ruby/object:Gem::Version
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version: 0.1
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version: 1.0.1
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- !ruby/object:Gem::Dependency
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name: rake
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requirement: !ruby/object:Gem::Requirement
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@@ -212,6 +218,7 @@ files:
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- lib/crb-blast/cmd.rb
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- lib/crb-blast/crb-blast.rb
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- lib/crb-blast/hit.rb
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- lib/crb-blast/version.rb
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- test/helper.rb
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- test/query.fasta
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- test/query2.fasta
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- test/test_bin.rb
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- test/test_test.rb
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- test/test_test2.rb
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homepage:
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homepage: https://github.com/cboursnell/crb-blast
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licenses:
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- MIT
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metadata: {}
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