crb-blast 0.4.3 → 0.5.0

checksums.yaml

@@ -1,7 +1,7 @@
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data/bin/crb-blast

@@ -9,9 +9,10 @@ require 'crb-blast'
 require 'bindeps'
 
 opts = Trollop::options do
+  version CRB_Blast::VERSION::STRING.dup
   banner <<-EOS
 
-CRB-Blast v0.4.2 by Chris Boursnell <cmb211@cam.ac.uk>
+CRB-Blast v#{CRB_Blast::VERSION::STRING.dup} by Chris Boursnell <cmb211@cam.ac.uk>
 
 Conditional Reciprocal Best BLAST
 

data/crb-blast.gemspec

@@ -1,7 +1,10 @@
+
+require File.expand_path('../lib/crb-blast/version', __FILE__)
+
 Gem::Specification.new do |gem|
   gem.name        = 'crb-blast'
-  gem.version     = '0.4.3'
-  gem.date        = '2014-07-23'
+  gem.version     = CRB_Blast::VERSION::STRING.dup
+  gem.date        = '2014-12-07'
   gem.summary     = "Run conditional reciprocal best blast"
   gem.description = "See summary"
   gem.authors     = ["Chris Boursnell", "Richard Smith-Unna"]
@@ -9,14 +12,14 @@ Gem::Specification.new do |gem|
   gem.files       = `git ls-files`.split("\n")
   gem.executables = ["crb-blast"]
   gem.require_paths = %w( lib )
-  gem.homepage    = 'http://rubygems.org/gems/crb-blast'
+  gem.homepage    = 'https://github.com/cboursnell/crb-blast'
   gem.license     = 'MIT'
 
   gem.add_dependency 'trollop', '~> 2.0'
   gem.add_dependency 'bio', '~> 1.4', '>= 1.4.3'
-  gem.add_dependency 'which', '0.0.2'
+  gem.add_dependency 'fixwhich', '~> 1.0', '>= 1.0.2'
   gem.add_dependency 'threach', '~> 0.2', '>= 0.2.0'
-  gem.add_dependency 'bindeps', '~> 0.1', '>= 0.1.3'
+  gem.add_dependency 'bindeps', '~> 1.0', '>= 1.0.1'
 
   gem.add_development_dependency 'rake', '~> 10.3', '>= 10.3.2'
   gem.add_development_dependency 'turn', '~> 0.9', '>= 0.9.7'

data/lib/crb-blast/crb-blast.rb

@@ -1,7 +1,7 @@
 #!/usr/bin/env ruby
 
 require 'bio'
-require 'which'
+require 'fixwhich'
 require 'threach'
 
 module CRB_Blast

data/lib/crb-blast/version.rb

@@ -0,0 +1,12 @@
+module CRB_Blast
+
+  module VERSION
+    MAJOR = 0
+    MINOR = 5
+    PATCH = 0
+    BUILD = nil
+
+    STRING = [MAJOR, MINOR, PATCH, BUILD].compact.join('.')
+  end
+
+end

data/lib/crb-blast.rb

@@ -1,3 +1,4 @@
 require 'crb-blast/cmd'
 require 'crb-blast/hit'
-require 'crb-blast/crb-blast'
+require 'crb-blast/crb-blast'
+require 'crb-blast/version'

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: crb-blast
 version: !ruby/object:Gem::Version
-  version: 0.4.3
+  version: 0.5.0
 platform: ruby
 authors:
 - Chris Boursnell
@@ -9,7 +9,7 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2014-07-23 00:00:00.000000000 Z
+date: 2014-12-07 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: trollop
@@ -46,19 +46,25 @@ dependencies:
       - !ruby/object:Gem::Version
         version: 1.4.3
 - !ruby/object:Gem::Dependency
-  name: which
+  name: fixwhich
   requirement: !ruby/object:Gem::Requirement
     requirements:
-    - - '='
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.0'
+    - - ">="
       - !ruby/object:Gem::Version
-        version: 0.0.2
+        version: 1.0.2
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
-    - - '='
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.0'
+    - - ">="
       - !ruby/object:Gem::Version
-        version: 0.0.2
+        version: 1.0.2
 - !ruby/object:Gem::Dependency
   name: threach
   requirement: !ruby/object:Gem::Requirement
@@ -85,20 +91,20 @@ dependencies:
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '0.1'
+        version: '1.0'
     - - ">="
       - !ruby/object:Gem::Version
-        version: 0.1.3
+        version: 1.0.1
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '0.1'
+        version: '1.0'
     - - ">="
       - !ruby/object:Gem::Version
-        version: 0.1.3
+        version: 1.0.1
 - !ruby/object:Gem::Dependency
   name: rake
   requirement: !ruby/object:Gem::Requirement
@@ -212,6 +218,7 @@ files:
 - lib/crb-blast/cmd.rb
 - lib/crb-blast/crb-blast.rb
 - lib/crb-blast/hit.rb
+- lib/crb-blast/version.rb
 - test/helper.rb
 - test/query.fasta
 - test/query2.fasta
@@ -220,7 +227,7 @@ files:
 - test/test_bin.rb
 - test/test_test.rb
 - test/test_test2.rb
-homepage: http://rubygems.org/gems/crb-blast
+homepage: https://github.com/cboursnell/crb-blast
 licenses:
 - MIT
 metadata: {}