crb-blast 0.3.1 → 0.4.0

data/lib/crb-blast/hit.rb

@@ -0,0 +1,34 @@
+module CRB_Blast
+
+  class Hit
+    # Fields: query id, subject id, % identity, alignment length, mismatches,
+    # gap opens, q. start, q. end, s. start, s. end, evalue, bit score
+    attr_accessor :query, :target, :id, :alnlen, :mismatches, :gaps, :qstart,
+    :qend, :tstart, :tend, :evalue, :bitscore, :qlen, :tlen
+
+    def initialize(list)
+      raise(RuntimeError, "unexpected number of columns") unless list.length==14
+      @query      = list[0].split(/[\|\ ]/).first
+      @target     = list[1].split(/[\|\ ]/).first
+      @id         = list[2]
+      @alnlen     = list[3].to_i
+      @mismatches = list[4].to_i
+      @gaps       = list[5].to_i
+      @qstart     = list[6].to_i
+      @qend       = list[7].to_i
+      @tstart     = list[8].to_i
+      @tend       = list[9].to_i
+      @evalue     = list[10].to_f
+      @bitscore   = list[11].to_f
+      @qlen       = list[12].to_f
+      @tlen       = list[13].to_f
+    end
+
+    def to_s
+      s = "#{@query}\t#{@target}\t#{@id}\t#{@alnlen}\t#{@evalue}\t#{@bitscore}\t"
+      s << "#{@qstart}..#{@qend}\t#{@tstart}..#{@tend}"
+      return s
+    end
+  end
+
+end

data/test/helper.rb

@@ -0,0 +1,16 @@
+require 'simplecov'
+require 'coveralls'
+
+SimpleCov.formatter = SimpleCov::Formatter::MultiFormatter[
+  SimpleCov::Formatter::HTMLFormatter,
+  Coveralls::SimpleCov::Formatter
+]
+SimpleCov.start
+
+require 'test/unit'
+begin; require 'turn/autorun'; rescue LoadError; end
+require 'shoulda-context'
+require 'crb-blast'
+
+Turn.config.format = :pretty
+Turn.config.trace = 5

data/test/query.fasta

@@ -0,0 +1,22 @@
+>scaffold3
+CCACCCCACTTCAACTCCCAACAACATATATACATTACACACCCCCACAACACACTCACACACTCTCTCACACAACACCACCAGACAATGAACCACAACTACCGTTACAATGTTCTTCTTTTCTTCTTCCTCATCATCTTCTCACATACATCTGCTCATCGTTTCTTGCACACCAAATCAGGTGAAAGCATGGTGAAACCCGATGATNCCAGGTGAAAACATGATGAAACTCGATGATCAATCCATCAATTACACCGGTGAAAACCCTCTTGTCGAAGTAGAAATAGTCAACTCTGACTCCTTCAATGAGGTTATGGGGGTGGAGGACTGTGGGAGTGGAGATGAAGAGTGTTTGAAGAGAAGGGTGCTTGCAGATGCTCATTTGGACTATATTTACACTCAGCATCATAAGCATTGAAATAAGTTGTATTTCACCCTCTTTATTTATAGCTTTTTATGTCTTAATGTAACATAGGGTTAAATTCAAGTAATATTAATGAAATAAAAAAAACTTACTTAGATTGATGGTTGGATTTAACATTTAATTAGTTATACTTATTTTACTTATATTGAAGTGGATAATTATACTATCTTATACTGTATTATACTCGAAAAAAAGAGGTTTTTGGACTTGGGGTCTCAATAAGTGCAGCCTCAAATAGATGTGTCTCATCAGACCCTCTCTAGACCTTATAAATAGCATTGTTATAAGTGAGATTATACTGTGTTTGTTTGTTTGTTTGATTCATAGACAAGAACCAGTTTATATGCAAGAAATTGGTCATAGGATGAGCAAATTATCAAACTGGTCCGTAACCAGCCGGTTTAAATTATGGGAAACAGTCCAAAACAGGTATATATAACCGGACTCCAACCAGTCTCAACAGCAGGTCCTTTCGGGTTCTGAAAACACTGTTAAAAAGGATAATTACATGGTCGGGACAGTAATTGAGTAGAGCTACCAATAATTCCATGTTCATGAACACTAACATTGAGTAATTCTT
+>scaffold4
+CCACCCCCCCACTTCAACTCCCAACAACATATATACATTACACACCCCCACAACACACTCACACACTCTCTCACACAACACCACCAGACAATGAACCACAACTACCGTTACAATGTTCTTCTTTTTTTCTTCTTCCTCATCATCTTCTCACATACATCTGCTCATCGTTTCTTGCACACCAAATCAGGTGAAAGCATGGTGAAACCCGATGATNCCAGGTGAAAACATGATGAAACTCGATGATCAATCCATCAATTACACCGGTGAAAACCCTCTTGTCGAAGTAGAAATAGTCAACTCTGACTCCTTCAATGAGGTTATGGGGGTGGAGGACTGTGGGAGTGGAGATGAAGAGTGTTTGAAGAGAAGGGTGCTTGCAGATGCTCATTTGGACTATATTTACACTCAGCATCATAAGCATTGAAATAAGTTGTATTTCACCCTCTTTATTTATAGCTTTTTATGTCTTAATGTAACATAGGGTTAAATTCAAGTAATATTAATGAAATAAAAAAAACTTACTTAGATTTTTGATGGTTGGATTTAACATTTAATTAGTTATACTTATTTTACTTATATTGAAGTGGATAATTATACTATCTTATACTGTATTATACTCGAAAAAAAGAGGTTTTTGGACTTGGGGTCTCAATAAGTGCAGCCTCAAATAGATGTGTCTCATCAGACCCTCTCTAGACCTTATAAATAGCATTGTTATAAGTGAGATTATACTGTGTTTGTTTGTTTGTTTGATTCATAGACAAGAACCAGTTTATATGCAAGAAATTGGTCATAGGATGAGCAAATTATCAAACTGGTCCGTAACCAGCCGGTTTAAATTATGGGAAACAGTCCAAAACAGGTATATATAACCGGACTCCAACCAGTCTCAACAGCAGGTCCTTTCGGGTTCTGAAAACACTGTTAAAAAGGATAATTACATGGTCGGGACAGTAATTGAGTAGAGCTACCAATAATTCCATGTTCATGAACACTAACATTGAGTAATTCTTGTACTGCA
+>scaffold5
+CCACAAACAAGATTTGTTTTAAAGAAAGCTCTTGAATTCGGTCATGCAGTTGTTGTTGTTGTGAATAAGATTGATAGACCGTCTGCTCGCCCTGAATTCGTCATCAATTCTACTTTTGAACTCTTTATTGAACTCAATGCATCTGATGAACAATGTGATTTTCAAGCAGTGTATGCTAGTGGTATAAAGGGAATGGCTGGACTTTCTCCTGATAATTTAGCAGATGATCTTGGACCACTTTTTGAGACAATAATTAGATGCATACCCGGGCCACGTGTTAAGAAGGATGGCGCACTTCAAATGCTTGTCACGAGCACAGAATATGATGAGCACAAAGGAAGAATAGCGATTGGGAGGTTACATGCCGGTATTTTGAGTAGAGGCATGGATGTTCGTATATGCACACCAGATGATGCATGCAGATTTGGGAAAGTTAGTGAATTGTTTGTANGATTAGTTTCTGTTATGTAAAATGTGTAACAGATTGTGTTCTTATGTTTTGTTGGCATAAGCTCAGATATGCACACCAGATGATGCATGCAGATTTGGGAAAGTTAGTGAATTGTTTGTATTTGAGAAGTTCTCTAGGGCACCTGCAGAGAGTGTTGAGGCGGGTGATATTTGTGCCGTGTGTGGTGTTGGTGATGTTTAGATTGGAGAGACCATTGCTTGTAAAGCTGATGGGAAACCTTTGCCTGCAATAAGTGTTGAAGAGCCTACTGTAAAAATGGCTTTCTCTATCAACACTTCACCCTTTGTTGGTCGTGAGGGGAAGTATGTTACAAGTAGAAATTTAAGAGACAGACTGTACCGTGAGCTGGAGAGAAATTTGGCCATGAAAGTAGAAGATGGTGAAACCGCTGATACTTTTCTTGTTAGTGGACGTGGTACTTTACATCTCACTATACTGATAGAAAACATGCGAAGGGAAAATTATGAGTTCATGGTTGGCCCTCCAAAAGTAATTAACAAAAAAGTCGATGATAAGGTTCTTGAACCTTATGAGATTGCGACCGTAGAGGTGCCTGAAGAACACATGGGCGCAGTTGTTGAACTTTTAGGTAAAAGGCGTGGGCAGATGTTTGATATGCAAGGAGTTGGCTCTGAAGGAACTACAGTATTGAAGTACAAGATCCCTACTCGTGGACTTCTTGGACTAAGAAATGCCATTCTAACGGCTTCCCGAGGAACGGCTGTTCTCAACACGATCTTTGATAGTTATGGGCCTTGGGCTGGCGATATGACAACCCGTGATCTCGGATCCCTGGTTGCATTCGAGGATGGGACCTCGACGTCATATGCTCTTGCTAGTTCTCAAGAAAGAGGGCAGTTGTTTATAAAACCCGGAGTAGAAGTTTACAAAGGTCAAATTGTTGGCATTCATCAACGACCTGGTGACTTGGCGCTCAATGTATGCAAAAAGAAAGCAGCTACTAACGTCCGCTCCAATAAAGAAGTGTCAGTTGTTCTTGATACACCATTGGATTATAGTCTTGATGATTGCATTGAGTACATCCAAGAAGACGAGTTAGTTGAAGTAACTCCAAAAAGTGTTCGGATGTGCAAAAACGCGAAGATGAACAAAAAGGGCCGGTAAACAAGATCTTTTGATGGCACATTTCAGTGATCAACTTAGATCTTGAGCAATTTTTGCACCAATATAAACCATATGGTGCTGGCTACGCGAAGTATTAGGTGATGAATATAGAAGATTTTTTAGTTCTTAAAACATAAAAATAGTATACGGTTATGCAGACGGCACAGTGATCATCGATCATATCGACTTATATACGATAATCACGTAAAAAAAATCAATATTTAATAGCGGGTCGTGGTGAAGAATCGATGTTAAGAACTACACATGAGTGTATCTTGACTCATACAGGTTGTCTGTACTTTGTAACATCATATATAGTTGTGGCCAAACACCACACTGATGATGCATTTTTGACTTCCTCATATTTACCATCTATAGCAATCCCTTCACCATTTCTCACAGCCAAAGATCTCAAAAATAAAAAAAAAAATATTTTAAATTTGTGTTTTCTTCAAAGTTTTTAGTGTAGACATATGCTTGTATAATTGGTATTAGAATATTTATCAAAAGAATATTTGTTGGCG
+>scaffold19
+CTGTTGGCTACAAGTAGTGCTATATTTCACCTTTTAATTACATTGATAGCTGCCTTCAACCCAATTTATTCGTATGATCAATTCATGGACGAGTGTGCAATTGGCTTCTCTGGTGTTCTATTCTCTATGATTGTTATAGAAACAAGCTTAAGTGGAGTCCAATCTAGAAATGTATTTGGACTTTTTAATGTACCTGCTAAGTTGTATCCGTGGTTGTTATTGGTGCTGTTCCAGCTTCTTATGACAAACATCTCATTACTCGGACACTTATGTGGGATTCTATCTGGATTTGCATATACTTATGGATTATTCAACTTTATAATTCCGGGCAGCTCGTTCTTTTCAGGCATAGAATCAGCTTCTTGGCTTTCAACTTGTGTGCGTAGACCAAAATATATAATGTGCACAGGTGGTGATCCTTCTGGATACATCCCTACATATTCTACTCGTAACACAACATCTAGTGGAACTCTTTCCGGGAATATGTGGACAAACTTGTCGTCATGGATTCCACGTAGAGAGGTGCTTCCCCAGTCAACAGAAGAAAATAGCAGGTTTCCTGGGCGTGGGAGGACACTTGGTGCAACTCAAACC
+>scaffold27
+TATTTTCCCAAAAGGTTACAAAAGTATTTGATAATAACATAAAAATTAACCATATATGTGGTGAAGATTAGCCCAATGGGTACACCAGTGGTGAAGATCAAAGGTTAAGTTGTAACCTCAAAACCCATCTCCCTATCCAAATCCTTTAAACCAGTGGTCAATATTTCACAGCCATGTGGCATCACAGGCAATCTCAATTGTGTGGTGGTTAACAATTCAAAAGCTAATCCTCTCTATATAAGTTATTATCTTCNCTTCACAGTGTACCTTCGTATCATTCCTAAATTCAACTTCAGTTCCACTGACACTCGCCTGAGATCAATGGCAACCGCCGTCTCTACCGTCGGAGCCGTCAGCCGTGTTCCGTTGAGCTTGAATGGAACCAGTGGTGGTGCTGCAGTCCCAAACTCAGCTTTCATGGGCAACAGCTTGAAGAAGACAGTGAACTCAAGATTGATAAACAACAAGCCAGTGTCCCTGAAAGTATTTGCAGCTGAGAAGGAGATCGAGGAAACCCAACAAACCGATAAGGACCGATGGAGGGGACTCGCATACGATATGTCTGATGACCAACAAGACATCACCAGAGGCAAGGGTATGGTTGATTCTCTCTTCCAAGCCCCACAAGAAGCCGGAACCCATTACGCTGTCATGAGTTCATACGAGTACATTAGCACCGGTCTCCGCACATACTTGGACAACAACATGGATGGATTCTACATTGCCCCGGCTTTCATGGACAAACTTGTGGTTCACATCACCAAGAACTTCATGACTTTGCCTAACATCAAGGTTCCTCTCATTTTGGGTGTGTGGGGAGGCAAAGGTCAGGGAAAATCTTTCCAATGTGAGCTTGTGTTCGCCAAGATGGGAATCACCCCAATTATGATGAGTGCCGGAGAATTAGAAAGTGGAAACGCTGGAGAACCAGCAAAGCTGATCAGACAAAGGTACCGTGAGGCTGCAGATATCATCAAAAAGGGGAAAATGTGCTGCCTGTTCATCAACGATCTTGACGCGGGAGCAGGGAGAATGGGGGGAACCACCCAGTACACGGTGAACAACCAAATGGTTAACGCGACTCTGATGAACATCGCGGATAACCCCACCAATGTGCAACTCCCTGGTATGTACAACAAGGAAGAGAACCCGCGTGTGCCCATCATCGTCACGGGTAATGACTTCTCAACCCTCTATGCTCCCCTAATCCGTGACGGACGTATGGAGAAGTTCTACTGGGCTCCAACCAGAGAAGACCGTATCGGGGTCTGCACCGGTATCTTCAGAACTGATGGTGTTTCTACAGAAGATGTTACCAAGCTTGTCGACACTTTCCCAGGCCAATCCATTGATTTCTTCGGGGCGTTGAGGGCTAGAGTGTATGACGACGAAGTCAGGAAGTGGATTTCGGGCGTGGGTGTGGAACAAATTGGGAAAAAGCTTGTGAACTCGAGGGAAGGCCCACCGTCGTTTGAGCAACCCAAGATAACAATCGACAAGCTTCTGGAGTACGGAAACATGTTGGTTCAAGAACAGGAGAATGTGAAGAGAGTCCAGTTAGCTGATACCTATTTGGATTCGGCTGCACTCGGGGATGCTAACAGGGATTCCATCAGCCGAGGAGACTTCTACGGGAAAGCGGCCCAACAGGTGCAGGTTCCCGTTCCAGAAGGGTGCACGGACCCTGGTGCCGAGAACTTCGACCCAACGGCTAGGAGTGATGATGGCAGCTGCACTTATACTTTCTAAATATAGAAACTTTTAAGGAAAAGTATTGTCTAAGGATGTGAGGATGTCAAA
+>scaffold32
+GGAAAGACATTTAGAGAGCAAGTTCTTCGCTGGTTAACTTATCATAAGATTTCTCAAGTTGATTCTATTGTTTTGACCCATGAACATGCTGATGCAGTACTTGGTCTTGATGACATCCGTGCAGTGCAACCATATAGTCCAATAAATGAAATTGAACCTACACCTATTTTCCTGAATCAACATGCGATGGAAAGCTTAAAAGTGAAATTTCCGTACTTGGTTCAAAAGAAGCTCAAGGCTGGTCAAGAAGTTAGACGTGTGGCACAACTTGATTGGAAAATAATTGAGAATGATTGTAAGAGTCCATTTGTTGCATCCGGGCTAGAAATTATACCCTTGCCGGTAATGCATGGGGAGGATTACATCTGTTTAGGTTTTTCATTTGGGAAACATAGCAAAGTAGCTTATATATCTGATATTTCTCGTTTCATAGAAGAAACAGAACTCTATATTTCTAAAAGAGGAGGTAAGCAGCTGGATCTTCTTATATTGGATACACTTTATAGGAACAATTCTCATAATACTCACTTTTGCTTCCCCCAGACACTTGAAGCCATTAAACGGTTGGAACCAAAGAGAGCATATTTGATCGGAATGACCCATGAATTTGATCACCACAAAGATAACGAGTTTCTACAGGATTGGTCCAAAAGAGAAGGAATTCCAGTTCAGCTTGCACATGATGGTTTGAGGATACCTATACATCTCTAACGGTTTTTGTCCGTATAAACAATTGCATATCTCTTGTTTCTTTCAATACAAATGAACGTATACGATTAATAATAGACCCTAAATCACACTAAAAATATGCTTACTAAAAACACATTTTGCCATGCAAACACAAATTTGCCTAGAATTGTACTCTTAATTGCTCTCTTGGGTGTTTTTAGTGATACGTCAAATTATATATTCACTCGATCGA
+>scaffold52
+ACTCAGTATCCAAACGCCCCCTATGACATGTTCATCGAACACCCGCCAAAACCTTCTCGTCTGATTCATCTTCTCCGTCCAAAATCAATCAAAAACCCTAAAATTCATCCCCAAAATGAAGATCACAAAACGCTTCAATCGAGTCGTTAAACCCCTAAAACCCATAAATTCATCCACAAGTGATTTCAAACCTAATACCACCAAGAACAAACCAAATCTGAAGCTGAAATCGAAAACAAAACCTACAACAATCAAGCAGAAACCCCCAAATAAACACGATATTCATTCAATAGAATCCAAACCCTCGTTCTCACTCGAGAAATCCCCAATTTTGGGCCCTGAGTNGCAAAACCTACAACAATCAAACAAAAAGCCCCAACTCAACCCACTATTCACTCAACAGAATCAAAACCCTCGTTCTTACTCGAGAAATCCCCAATTTTGGGCCCTGAATTTTACCAAATTGACGCCCTTGATCTTGCGCCTCGGTTGCTTGGAAAGTACCTTAGGAGAGATGATGTNCCAGATTACAGAGGTGGAAGCATATAGATCTGATGATTCTGCTTGTCATGGTCGTGTTGGTGTTACTTCAAGAACTGCTCCACTGTTTGGACCAGGAGGGCATGCTTATGTGTATCTTTGCTACGGTCTGCATACGATGTTGAATGTTGTAGCTGACAAACAAGGAATTGGTTCAGCTGTCTTAATTCGTTCTTGCGCACCTGTCACTGGGTTGGAAACTATAAAACAGCGTCGGGGATTGGATACTGAGAAGCCCGTTCTTCTTACCGGGCCCGGAAAGGTTGGTCAAGCACTAGGGATCTCAACAGACTGGTCTAACCAAGCTCTCTTCACTCCTGGTGGTTTGGAGCTATTGGACGGTCCAGATGTGAAGGAAATAGTGGTGGGGCCACGTGTAGGGATAGATTATGCTTTGCCTGAACATGTTGGTGCGTTATGGAGGTTTGCAATTGCTGGTAGCCCTTGGATAAGTGCTCCTAAGAACACCCTACGCCCACCTTAATCTTTTACTGATCCATTACATTAATCTTGGTTGTGATTAGATGGTTCTTTTTAATCTTTTAGTAAAATTTAATGTTGTTTCTTNCTAAGAACACCCTACGCCCACCTTAATCTTTTACTGATCCATTACATTAATCTTGATTTTGATTAGATGCTTCTTTTTAATCTTCTAGTAAAATTTAATGTTGTTTCTCACTTTCTTTTGTCCGGGGTTTAATATAACATGTCACTTTATGGGTTTAAAAAGCG
+>scaffold53
+AAAGCCTTCACAAACCCAACACACCACATGTCAAGAATTTACATGGCCAATAATACACAGACATGACTAATCTAATGTAGCATCTTGAATCTTTTGCACATTACTTCATATCTAAAAATGAAAATATAAATTTCATAACACACAGTGACAATAACGCCAAGGGCAGGATCAGTGATGAGGTACACCACTACACGGGACTCAACATTCTCATCCAAGAAAACAACTCAAACCTAGTGATAATTTAATAACTTTTAAAGTTGAGATAATCCTCCTAAAGACGTAAAAGCCTAGAATTTCTATTTCGATAAGAAGCACGGCATTGAGCATTGTGATTTCTCGCCTTGAGGTCCCAACTTAGCCCCATGACACCCCCCCCTCCTTAAACCCACAAAAAAACTCAGCTAAAAAAAACATAGAAAGATCATGGCTAAGGTTGGTGATGAGGTACAAGAACTCAACATTCCCATCCAAGAACACAACTTTGAAAATGATAATTTAGTAACTTCTAGTAGTTCAGATAACTCGAACCTCCTACTGCTACAAGACGCTTTTGGCTAGCAAACTGTAACATCGCAATACTTGTTACAATAAACTTATAATCAACATATGATCATCTGATCAGCATTTCCTTTGTTTTCCAATGATGCAAAACACATGATCAAGAATTCACATCACCACACAAACAAACAAACATGATTGATCTAATGTAGCATCTTAAATCTTCTGCACAGAACTTCATATCTAAAGTTGAAATTAGATCATACAACACATGGAGACATTAAGGCCATGGGCACAGCCAGTGATGAGGTACGCAACTACATGGAACTCATCATTCCCATCCAAGAAGACAACTCAAACCCAATGATAATTTATTAACTTCTATAAGTTGAGATAACTTGATCCTCCTAGAGCCATAAAGCCCTAATATTTCCATTTCAATAAGGAGCAAGGTATTTTGCAATGTGATTTCTTGAGCCTTGAGGTCCCAACTCAGCGTCTCAGCCCCAAAACCCAATTTCACTTATAGAACACGTTATGTCGAGAAAAATAATCCAAATGATGGCATACACATATGCTTCGATTGACAAGTAGATAAACGACATTTAATATAATTATAAGTTCAAATTAACGACGAGCCTTGCCGAAAAGAAACAATATCCAAAATAGCATATGCATATAGTAATAAATGTCTCTTATGAGATTAACATTTAAAAAAGATCTAGACTTCAATTCAGAGTACCAGATTTTTGCTTCGATAAGCACTCTAAGGGACCACAACTTAGCATGAGATAGTTTATCTATGTCCTTGAACCCGTTGCATATCATATGTGCCCCATGATCCAGGTCCAGGTCCATACTGAGGATAGCCTTCGGCACTAGGCTGCACAGGATTCCTTTGATTAGTAGAACTCATTCCATAATTTGCAGGATAAGGATTCACACCATAGTTAGCTTCAACATTTCCATAATTTGTAGTATAACCAGGATTTGGATTCCCTACTGCGGCAGCAGCACGGGCCCTTTTTTCAGCATTAGCCATCTCGGCACGTAACTTTTCCAGCTCACGAGCCATAGAGAGTAAATTCTTCTCCATCACCTGGCCATGTTCATAGTTCTCTGCAAGCCCCTTCTTCTCATGTTCAATTGCAGCCCTTGCATGTTGCAGTTCCTGCCTAAGCCCTCCAATTTCCGACTTGAGTGCTGGAACTTGCTGCAAGTCAGCATTAGCTCTAGCAAAATCTTGGGTCATAGCCTGAACTTGAGCAGTAAGCTTTTGACGTGTAGCAGTCAATTCGTTAATATCAGCATGCAAATTCATAAGCTCACCCCGCATGCCTTCAACCCCATGAAGATCACGTTCCACTTTAGCCGACTTCTCATACAGCTCCCTCATCTGCATATCCTTCTCCATCAGGAGGTTTCTAGCAAAATTATCGGTTTGTTGAAGCTCATGTTGTGCAGCTTCTAATTCCTGCTTAATCGCAACATGGGTTGCAGCTAATCGCTGATTATCAACCAATAGCCCCTGAATGTCCTGATGTTGAACTGCTAATTGCTCCTCAATGATAGCAGGGTGAGGCGGGTGTGGTCTGTGAGCCCTTGCAAACTCAGCTTCCCTCATCTCTTCAAGCAAGGCAGGGTGGGGGCCATGGGGCATTGGGCCTACATTCCTCCCAAATGGTGGAGGTCCACGATTCCTCCCAGACATCTTTCTCAGAGAAATTCAGCAAATGAAAGAACCTAAGACCTTGGAGGGCGTATTAATCTAGTATATCAGCATACCCAGAGGAGAGACAAAGATTGACGCAAGGTCAAGTTCGCCTTGCAATGGTGTTATGACTTATGAGGTGGTCGGTTTCTTCGATCCGAA
+>scaffold90
+GAGCTCTCCTGTCAGGTTTTTATATATAATAAAATCTTTAAACGTTGTTTATGTACTTTAGATAATTCGCTAAGTCGATGCATCTATATGTTGCATTACATTGCAGATACACGAGGAGGCACGGAAGTTTTCATATCAGACAGGTGTCAAGGTGGTGGTTGTTTATGGAGGAACACCGATTAATCAACAGTTAAGNCTCTCCTGTCAGATACACGAGGAGGCACGGAAGTTTTCATATCAGACAGGTGTCAAAGTGGTGGTTGTTTATGGAGGAACACCGATTAATCAACAGTTAAGAGAGCTCGAGAGGGGAGTTGATATTCTTGTTGCCACACCAGGAAGGTTAGTTGATCTACTGGAGAGGGCAAAAGTGTCATTGCAAATGATAAGGTATCTAGCTCTTGATGAGGCGGATCGGATGCTGGATATGGGATTTGAGCCTCAAATTAGAAAAATTGTCGAGCAAACGGACATGCCTCCACCAGGTGAAAGACAAACAATGCTGTTCAGTGCCACATTTCCCAGAGAAATCCAGAGACTGGCATCTGATTTTCTTTCAAATTACATATTTCTAACGGTGGGTCGTGTCGGTTCAAGTACCGATTTAATTGTTCAAAGAGTGGAATTTGTGCAAGAAGTTGACAAAAGAAGCCATCTTATGGACCTCCTCCATGCTCAGAAGGAAAATGATTCTCATGGGAAGCAAGCTCTTACATTAGTTTTTGTTGAGACAAAGAAGGGAGCTGATTCACTTGAACATTGGCTTTATAGCAATGGGTTTCCTGCAACAACAATTCATGGTGACAGATCACAGCCTGAAAGAGAGCAAGCATTGAGATCATTCAAGAGCGGAAACACACCTATACTAGTTGCAACTGATGTGGCAGCACGTGGTCTTGATATCCCTCATGTTTCTCACGTGGTCAACTTTGACCTTCCGAACGACATTGACGACTACGTGCACCGTATAGGACGAACGGGCCGGGCTGGGAAAACGGGCTTGGCTACAGCTTTCTTTAACGAGAATAACTTGTCATTAGCAAAAGGATTAGCTGATTTAATCCAAGAAGCTAACCAAGAAGTACCTGCATGGCTTACTCGTTATGCTAGCCGGCCTTCTTATGGTGGCGGTAAGAACAGGCGGTCAGGTGGGCGGTTTGGTGGCCGTGACTTTAGAAAGGAAGGCTCATATGGTGGTGGTGGCAGTGGCTATGGTGGTGGCAGCAGATATGGTGGTGGCGG
+>scaffold103
+GTCAAACTCAAAGTGGTTGTGTTCCACGCAAAGATAAGGTGTGAAGCATAAACCCCAAACCATTCCAGGATATTCTTCCTCGTGTTTGTTTCTTTCTTATCGGAAAACAACTCTGCTTCGATGCAGATCGGAGTCCTGATTTCATGGACCGCATCATAACATCATACCCTTGTTCTTCTTCTTCTACTCTAACACTGTCCCTCTCAAGATTTTGTTCAAATATCAAGAAACTAGGAAGAAGAAATTCCACTGGCATCTCTCTCTCTTGTTCAAACCCTCAAAACCCTAAATCTTTATGGCAGAAATACACCTCATCCATCAAGAAGTTACCCATTTTCAGACACTACGCCATGGATCCACTCAGTCGCCCCAGTTGCCTGCTGAATGGAGGGCTCGGTATGGCTCTGTTGAGCGTAACTGCAACGGCAAAGGTTCGTATTAGCCCCTTTGTTGCCACACTAGCTGCGAATCCAACTTTTGTCTCTGGGTTTTTTGCGTGGCTGATGGCACAATCTCTGAAAGTTGTGTTGCATTTTTGCTTTGAGAAGAAATTGGATTTGCGAATAATGTGTTCCTCTGGGGGGATGCCGTCTTCGCATTCATCTTTATGCACGGCTTTGACCACCTCAGTGGCAATATGCCATGGAGTGGCAGATTCTTTGTTTCCGGTGTGCTTAGGCTTTAGTTTGATTGTCATGTATGATGCCATTGGCGTCCGTCGTCATGCTGGGATGCAAGCAGAGGTTCTGAATGTGATAGTTGAGGACTTGTTCCAAGGTCACCCCATCAGTAAAAGGAAGCTCAAGGAGCTGCTCGGACACACCCCATCACAGGTGGTTGCTGGGGCTCTGCTTGGGATCCTGGTCGCTTGTTTTTGCTGTCAAGCCTGCTTCACTGCCATCTGAACTCGACTCTCCTTCCATCCACATAATATTATTGATATAGTTAGTAAATACCCACTCTCAAGTCTCAACTTCCCCAACCCAACTTCAAACCATCACTACCTACTTTTCATTGTAATTCTCATAACTGTCTTTTTTTTCTTTTGTGCTTTATGACTCTCAAGCATTGTTTTCTGGATTCTACAAATTTATTCTCAAGCATCTTGCTATATCAATCAAGTAAACCATATATAACAAACAAGTTTACTCCATAACCTCACCCTAGCTATTCACATCTCACACACTTATCTTGTAAGAAAACTCTAATTCAATAACCGATATTATTTACACATCATAACCTTTACCCTTGATGGGTACTCTCCATTCCCCTAGGTCGAGGTACATGTTGTCTTTCCATCACCACTTGCTATATTGACCTGGACCTTTTTCCTGATAGCCTAAATTTTCCCAACGACGTGCAAGTAGTGATCAATCACCAACCCCCATCCTGCATAACGACATTGTACGTGCATTCAAACTTGTTCACATAAGCTTTCTTCCTATAGCACGTTTGCATAACATGCCATACCATGTATCATTTTATTGTTGGCACAACATGTCATAATATAGA
+>scaffold109
+CCAGATGAAGACGACGATAAGGAGGAAAAAGCATCGAAATCATCACTACACAACAACAAGGTGAAAAACTACTCGTGTGTTGATAACTGCTGTTGGTTCATCGGTTGCGTGTGCTCCGTGTGGTGGTTGTTGCTGTTTCTGTACAATGCGATGCCGGCGTCGTTCCCGCAGTTCGTGACGGAGGCGATCTCCGGACCGTTTCCGGATCCTCCAGGTGTAAAGTGTTTGAAGGAGGGGCTGAAGGTGAAGCATCCGGTGGTGTTTGTGCCCGGGATTGTGACCGGTGGACTTGAGCTGTGGGAGGGGCACCAGTGTATGGATGGATTGTTCAGGAAGAGGCTTTGGGGCGGTACGTTTGGTGAAGTTTATAAGAGGCCTTCATGCTGGGTACAACATATGTCGCTGGACAACAAAACTGGGATGGATCCACCAGGTATACGGGTCAGACCCGTAAATGGACTTGTAGCTGCTGATTACTTCGCCCCAGGATATTTTGTATGGGCTGTTTTGATCGCTAACTTGGCTCGTGTTGGGTATGAAGAGAAAAATATGTATATGGCTGCATATGACTGGAGACTCTCATTTCAAAACACGGAGGTAAGAGACCAAACATTGAGCCGGATAAAGAGCAATATAGAACTGATGGTTGCTACAAATGGTGGGAATAAGGCTGTTGTTATTCCACATTCAATGGGGGTTATTTATTTTCTGCATTTCATGAAGTGGGTCGAAGCACCAGCTCCAATGGGAGGTGGAGGTGGACCAGATTGGTGTGCTAAACACATAAAGGCTGTGATGAATATTGGTGGACCGTTTTTAGGTGTCCCAAAAGCTGTAGCCGGGCTTTTCTCTGCTGAAGCCAAAGATATTGCATCAGTCAGGGCTCTTGCACCAGGTGTGTTGGACTCGGATTTATTTCAGATTCAAACGTTACAACATATAATGAGAATGAGCCGCACATGGGATTCGACTATGTCTATGATACCAAAAGGCGGGGACACCATTTGGGGTGGTCTTGATTGGTCACCCGAAGAAGGGTATAGTCCAAGTAAGAGGAAAAATGGAAAAAATGACACTGAATCTTCCACCCAAAAGGAGTCAGCAAGTGAAGTATGTGAAGCAACAAATGCAAATTATGGAAGGATAATATCATTTGGGAGAGATGTAGCAGAGGCACTATCTTCAGAGATTGATAGGATAGAATTTAGGGGTGCTGTGAAGGGTAATAATGTTGCAAACAATACGTGTCGCGTTGTGTGGACTGAATATCATGACATGGGATTTGGTGGAATTAAGGCTGTTGCAGAATACAAGGTATATACAGCTGGCGAAATTGTTGATCTGCTCGAATTTGTTGCTCCAAAAATGATGGAACGGGGTAGTGCTCATTTTTCATATGGTATTGCTGATAATCTGGATGACCCAAAATATTCACATTACAAGTACTGGTCCAACCCATTGGAGACAAAGTAAGAATCCTTGTAGCTTTTTTTGTTATCTTTATGAATTTTGAGTTTTTGACATTTCAAGTAGTCCAATGTGAATGTGAGTAACCTTCAAGGTCTGAGTCCCTCTAGTAGAGGTCTTAGGTTTGAATATAGCTTTCACTGGTTTTTTGCTTTTAACCCTCTTTTGAAGACTACCTGCTCAATATGAGCTGCAATTTACCTGATTCATTGGTTAGTAGGGTATTGGTGGGGTTCTGTGAGCTTTCTGGTTATAGCAAGGTCACAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAAATAGTTAAAATATAATAATCCATGCACAGTTTTTAATTTAAAGTTATTTTTTATCTCATTATTAGCTAGTAATGATATCCATTTTCAGGTTACCAAATGCACCAGACATGG

data/test/query2.fasta

@@ -0,0 +1,30 @@
+>scaffold24621
+AAAAAGCACACTCAAAAGACATCAGCTTTTATTTCCCTGTCTGTCTGCCATTAATTCCCATAAATATAACACATCACATCTCTCTGCTCCTCCTTTCCCCTTAAAACCAGAGACCCTTTTCTCACCATAACATCTCTCTCTCTCTCTCTCTCTCTCTCTCATGGACTCTCATCATACCTTCATATAACCTTCATTTACCCCCAATTCCCCACCTGGGTTTTCTTCTTCACCATCTTCCTTCACCTGGGTCATCTTCCAATTTCACAATATGATCACTGGTTCCGACCTTTACCATGTCTTTACGGCCGTGGTTCCACTCTATGTCGCCATGATCCTAGCCTATGGCTCGGTGAAATGGTGGAAGATCTTCACCCCTGATCAATGCTCAGGGATCAACAGATTTGTAGCTCTATTTGCTGTCCCATTGCTCTCCTTTCACTTCATCTCAACTAACAACCCTTACACCATGAACTCTAGGTTCATCGCTGCTGACACCCTCCAAAAACTCATCGTTCTTGTGGGTCTAGCCTTCTGGTCAAGATTGAGCGCTAGAGGCTCGTTAGAATGGTCCATCACTCTGTTTTCGTTGTCAACACTCCCCAACACACTTGTGATGGGAATCCCTCTTTTGAAAGGGATGTATGGTGACTTTTCAGGGAGTTTGATGGTGCAGATTGTGGTGCTTCAGTGCATCATCTGGTACACTTTGATGCTGTTTCTGTTTGAATACAGAGGTGCAAGATTGTTGATCGCTGAGCAGTTTCCAGACACTGCTGGTTCGATTATTTCTTTTAGAGTTGATTCTGATGTGTTGTCGTTAGATGGTAAAGAGCCATTGCAGACAGAGGCTGAAGTTGGGGACGATGGGAAGCTTCATGTGACTGTTAGGAAGTCTGCAAGCTCTCATTCGGAGATCTTCTCACGGCGTTCACACGGGGGAATGAACTCCGGTGTGTCATTAACCCCTCGTCCGTCAAACTTAACAAATGCTGAAATTTACTCTTTACAGTCGTCAAGAAACCCTACCCCAAGGGGCTCGAGCTTCAATCACACTGATTTTTACTCAATGGTTAATGGGAAAAGTGGTGCTAGTCCTCGTGGGTCGAATTTTGCAGGGTATGATGAGGAAAGTGGGAGTAATGTGAAGGTGAATGGGGGTCATGGGGGTGCAGGGTACCCTGCTCCTGCGAATGCCGGAATCTTTTCTCCGGTGGGTGGGAAGAGAGGTGGCGGCGGCG
+>scaffold46687
+AACTTAAGCTGTACAAAAATGTTTGCACTTACAAGCATGCAAGAACATAAAATATGTCTTGGAGTGTAGAGATCAATTTGTTATGCCTGATTGCCTCAGACGAGATGAAGTGTGAGAAATTGTGTGCAACAAACTCATCTATAGACTATACACATGCAATTTGTAGGCGTCCAAATTTTTTATGCTAAGCACTCTTATAAGAGCAACTCCAACATAAACAAGCACAAAAAATCTTTCATGTTACATGTCCCAGCATTTATACATGTAACATCCAATACTAGCTAGTTAGATCTTGGGCTGCAAATATTTTTATTAATTGCAGTGCCACAATTCACCCTTGCATCACTCAGTTCTATGATATATTAATCTTTTTATCTTGTTATCATGCTGATATCATTAATTCACCTTTTAATTCAAGAGGAGCAGGAGATCCATCAAGAAGCACAAGGAACAGATGAAATAAGAGAAACNGCACAAGGAACAGATGAAATAAGAGAAACAAACTCTAGTATTAAAAGAACAAGAATAATGCAGGTTTTATCAACTGTTGGGAAGAAGCTTCTAATTAATCCAAATTCTCATGCAACTGTAGCAGGCCTTTCATGGGCATTCATAAGCTTCGGGTAAGTGTGCATAAATACCGTCAGCACAAAGAATACAATTGCATAGATAATAATACAATAGTTAAATATAATGCAGGTGCAATGTAAAACTGCCAAAGGTATTTGAAGATTCAGTATCTATAATATCAGAAGGAGGACTTGGAATGGCAATGTTCAGCCTAGGTAACAACATAAATTTAAGCCGTTTCTAGCAAGTGTGAGAATATTTAAAATATAAATAATAGAAAATAAAAAAGATAAAATTTTATATTATGTGTATCACTCTACAGGTCTATTCATGGCATCACGGACACGCATAGTAGCTTGTGGTACCCGATTGACATTAATGGCCATGGTCTTGCGGTTCATTGTAGGGCCCGCCATAATGGCAGGGCCGTCTGTTGCTATTGGATTAAAGGGCATACCATTGGAAATTGCAGTTATACAGGTAGAAGTGTAGAACCATGTTTTCTATTAATATTAGTATTATTGTTATACCAACAAGACAAATACAAACCAATTAAAAACTACTATTTCCTCCAGGCAGCTCTTCCTCAGGGTATCGTCCCATTTGTATTTGCCAACGAGTATAATGTTCACCCAGAAATCTTGAGCACCAGGTGTTAACAGTGGTTGATTAATATTAATACCTAAACTTCAATTCACAACATGACAATTGACTACTTTTGATTACAGCATAATCATCGGATTGCTTGTTGCGTTGCCTATTGCACTGGTCTACTACTTCTTGTTGAGATTATAAAAAATACACGAAAAACAAACAGTGAAGCAGTTGAATGTGACGCATATATGGATTTTCATATTTCTTTAATAGCCTGATATAACAACTTCAAACTTACGAAAATTCTTTTATAAAGCCAATGCATTGTGCATATACAGCTAACTAGAAGATGATTCGTTCAAGCAAATGATAAAAAGCTAGAAGGCACCAAGATCTTTCAAGCCCAGGAATTAGAACACATCAGCATGATATCTTGTCATTTGAGTATGCTTCATTTTATTTATTTATTTTTTCAATTAAACATATATGTAGCTACAGGTAAATTGTATATAAAAAGCATATAAACAACTAAACAAGTACATAACTTTCTTTTTATAAAGTGTGTGACTATCATGTGTAACATTGTGCTATGCATCTACAAAATTGCAAAGTTCATGGTACCTCCAAATAACCACCATTTTACAAGATCGTAGTTGGATTAACATTTTATCTATGAACCTAGTTCAAATATTCCAACAATCGTATATATACAACAGTTTCATTTCATTCTAGAAAACAGCTACAGTTAGCACCTTGTAATAAAGGGTTAAAGATCACTACAAGGTTACATAAATGTGAAATCAACTCACAACTCATCACTGTAATATGGAAAACAAATGTGAATGCACGATTACATAATTACACAAACTTTAACAAAACCAAAACATTCTGGAGTTCATGGTAAATATGCTCATG
+>scaffold47909
+TTTTTTTAAATGAAATTTAGAAAAACAACCAAAATGTTTTAAAAAAAATTGAAAAACTAAATAATAAATTCCTTACATTAGTTGATTATCATTTAACATCTTCTTTTGTAATTGATTTTGTTTCAATTCAAGTGTTTTCTAAATATATTAAAACATCATCATTCAATTGAATGTATGTCATGTACTGGTTGTAGGTAAAAAACACAAAAGATAACCTAACCATAAACATGCGTTTAATTAAGCATCTTTTTTACTTTTGAGACGTTTATAAAAGGTAAATAAAAAACATAAAGTTAATCACACTTATAAGTGTCAGTTGACCCTCTTTTTTTTTATGTTAACATGCTCACACTGAGATGTCCTTTCTGTTTGAAAAAATAAAGATATAAAGGTAGCTACCTTAACATACAAATTCTTCATTCATTGTCAAGCACCGCAGCATTTAATTTGAAAGCACTGCACCATGATCACTGTTTCAGATTTCTACCATGTGATGACCGCGGTGGTCCCGCTCTACGTCGCGATGATCCTAGCGTACGGCTCGGTGAAATGGTGGAAGATCTTCACCCCTGATCAATGCTCAGGCATCAACCGCTTTGTCGCCCTTTTCGCCGTCCCCCTCCTCTCCTTTCACTTCATTTCCTCCAACAACCCCTACAAAATGAACCTTCGCTTCATCGCGGCCGACACGCTCCAAAAACTAGTCGTCCTCGCGGTCCTAGCCGCGTGGAGCAACCTTACTAAAAGGGGTAGTTTAGAATGGTCGATAACATTTTTTTCACTTTCAACTTTACCAAACACGTTGGTTATGGGAATCCCTTTGCTTAAAGGGATGTATGGTGGTGAGTCTGGTAGCCTAATGGTCCAAATTGTTGTTCTACAATGCATTATTTGGTACACTTTGATGTTGTTTTTGTTCGAGTTTCGCGGCGCAAGGTTGTTGATATCCGAACAGTTCCCTGGCACCGCGGGGGCTATCGCCTCGATTCATGTCGATTCGGATATCATGTCGTTGGACGGACGGCAAGTGTTGGAGACCGAAGCCGAGGTTAAAGAGGACGGAAAGCTTCACGTGACGGTCCGCAAGTCGAATGCGTCGAGATCCGACGTGTTCTCGAGAAGGTCGCAGGGGTTTTCGTCTACGACCCCTCGGCCATCGAATTTGACGAATGCCGAGATTTACTCTCTGCAATCGTCTAGAAACCCTACCCCTAGAGGGTCGAGTTTTAACCACAATGATTTTTATTCTATGGCGGGTGGGGTTGGTGGTAGGAATTCCAACTTCGGGGCGTCGGATGTGTATGGGCCTCCTGTATCCAGAGGGCCCACGCCCCGTCATTCCAACTATGAAGAGGAAGGTAGTGGGAATAATGCTAACAAGTCTCGTTTTCATCATGGAGGAGTGCTGGGTGGTAATAACTACCCAGCACCAAATCCCGGGATGTTTTCTCCGTCAACGGGAAAACCCAGCATACCGTTAACCAGAAAGGCAAACGGGCAAAAAGCAGATGAAGGTTCAAATGATCTACACATGTTTGTTTGGAGCTCGAGTACTTCTCCGGTTTCCGATGTATTCGCGGCTCGTGAATACGGAGCACTCGACCCACCAACCACAAAAGATTTAAAAGTTCCGATATCACCCGTAAAAGGTAACGGAGAAGAGTACTTGGAGAGTTACGGAAATAACAACATAAATATTGAAGGAACGGGTACAGGCGTCAAGTCAATGCCGCCAACGAGCGTGATGACGAGGCTAATACTGATAATGGTGTGGAGAAAACTCATCAGAAACCCGAATACTTATTCGAGCTTGATCGGTCTAGTCTGGGCTCTAGTATCTTTCAGATGGAATGTTGATATGCCTGCAATTATAGCAAAGTCCATTTCAATATTATCTGATGCTGGGCTTGGAATGGCCATGTTCAGTCTTGGTTTGTTTATGGCATTACAACCAAAGATGATAGCATGTGGAAATTCTGTGGCAGCTTTTTCGATGGCTGTGAGATTCCTTATAGGACCGGCTGTCATGGCAGTCGTTTCTATCCCTGTTGGCCTACGTGGCGTCCTATTACGCATTGCCATTGTCCAGGCTGCTTTACCACAGGGTATTGTCCCCTTTGTGTTTGCCAAGGAGTACAACGTCCACCCTGATATCCTTAGCACTGGCGTTATATTCGGAATGCTAATAGCGTTACCCATCACGCTCGTATACTACATTTTGCTTGGGCTAGAGAAATAGGTAATGTTTACATCATAAATTTGGTGGAAAATACGTCCATACTCATGCTCAAAAGCAATATTGTCTATGTAGTTTTCGGGTTTTTGGTTGGTAGAAAGAGAAAAAAATGGTGGTTGCTTAAATAGGATCCATTTTACATTGTTTAGCCGAGTTAATGTTATACGATTAAATGTTAAACTCGCCTTTTTTAATGTAGCTTATGTATTTATGTTGTATTTCATCATTTACATGCCAATTGAAACATTTAGATATAAAATACTTACGGT
+>C612630
+GTGCGCTTTTTTATAACCAAGAAATATATAATAATCAAAGTGCCTTTTCATGAAACATTAATACCTGGACAATTGCAATGCGTAAAAGAACGCCACGTAGGCCAATTGGATAAGAAACGATCGTCATTACAGCTGGTCCCACAAAGAATCTCACACCCATTGCCATTGTTGCCATGGAATTCCCGCATGCTATGATCCTTGGTTGTAATGCCATAAACAAA
+>contig-4577 283 0
+CGCTCGTTGGCGGCATTGACTTGACGCCTGTACCCGTTCCTTCAATATTTATGTTGTTATTTCCGTAACTCTCCAAGTACTCTTCTCCGTTACCTAAAGTACGTAAACGTAACATTTTATCGATCAGCTTAAATCTAAAAAGATAACGACAATGAAAATATTCTTAGATATATAAAAGTTGACCGGCCTTTTACGGGTGATATCGGAACTTTTAAATCTTTTGTGGTTGGTGGGTCGAGTGCTCCGTATTCACGAGCCGCGAATACATCGGAAACCGGAGAAG
+>contig-69208 224 0
+ATTTGCGCCACTTTCGACTCATTTTACCCGTTCCCTTTAAAGTTGCATATTTTTATTTGAGCCATTTAGACCGTATTACATAAAACACAACCCAAATAGACCCATTTATTCAAAACTGCCACCTCTATTTTCATTTATACCTAGACTAAACATAGCCATTCCTAGGCCTGCATCCGAGAGAATGGTAACTGAATTTTCGAGAATCTGTGGTTTCTTTATTCCCC
+>contig-115072 367 0
+GGTTGATACTGATCATGGTGTGGCGGAAACTTATCCGGAATCCAAACACATACTCGAGCCTCATTGGTCTAATATGGTCTCTTGTCTCGTTCAGGTAAATGGTTATGATATAAATATGTAGATTCAGGTAAATGATTATGATATAAATATGTAGATTTAAAAGTAGATTTAATACGTGTTCATATGTTAGAAGTTAAAAAAAACAATTATTAAAGGATAATGTTTTTAAATATATAGAATAAATATTTGTTTGTTAATAAATATATGTTTAATGGTGACAGATGGCATGTGGAAATGCCAATAATAATAGCAAAATCAATCTCAATACTTTCGGATGCTGGTCTTGGAATGGCTATGTTTAGCTTAG
+>contig-1453 255 0
+TAGCCATTCCTAGGCCTGCATCCGAGAGAATGGTAACTGAATTTTCGAGAATCTGTGGTTTCTTTATTCCCCACCTGCATATATCATGAAGAAAAGAAACAAAAGTTAAAACATTTTTGATCTTAATCTTTAATAGCATAAACCCATGTGAATCAAGTGGTAATCACCTGCAAGCAGCCAAAGCCCAGCTCAAACCAAGTATGCTTGCATATGAATTCGGGTTCTTCACTAGCTTAATGCATACCATTTTCAAGA
+>_47104
+CTAGTTAGATCTTGGGCTGCAAATATTTTATATTAATTGCAGTGCCACAATTCACCCTTGCATCACTCAGTTCTATGATATATTAATCTTTTTATCTTGTTATCATGCTGATATCATTAATTCACCTTTTAATTCAAGAGGAGCAGGAGATCCATCAAGAAGCACAAGGAACAGATGAAATAAGAGAAACAAACTCTAGTATTAAAAGAACAAGAATAATGCAGGTTTTATCAACTGTTGGGAAGAAGCTTCTAATTAATCCAAATTCTCATGCAACTGTAGCAGGCCTTTCATGGGCATTCATAAGCTTCGGGTAAGTGTGCATAAATACCGTCAGCACAAAGAATACAATTGCATAGATAATAATACAATAGTTAAATATAATGCAGGTGCAATGTAAAACTGCCAAAGGTATTTGAAGATTCAGTATCTATAATATCAGAAGGAGGACTTGGAATGGCAATGTTCAGCCTAGGTAACAACATAAATTTAAGCCGTTTCTAGCAAGTGTGAGAATATTTAAAATATAAATAATAGAAAATAAAAAAGATAAATTTTTATATTATGTGTATCACTCTACAGGTCTATTCATGGCATCACGGACACGCATAGTAG
+>_47472
+CAAGAGAATTACTAACATGAAATTAGAATATGCAACCTTTTTAAGTTAAAAGCATGTTGCTTTTGGTTTTACAAGTTTCTTTTAGCCCACTTACAAATGAGAATCAACTTGTCACATTCACACCATTAGGACACTTAAGTAGTCAATAACCCTTGAAAGCTTTACATCATATTTAATTAAAAACCTTAAATAATTACATCAAAAGAGATGATGCACATGCCACAAACAAACAAGAACCCAAATTAATTAAAAACATAGCTCTCCTTCCCATCAATCCTAATTGTTTTCCTAATATATCACTAAGATTTTTCTTTTTTTCCCCAAAAAAAGAAGAAAAAAAAAAGATTAAATTCCCTTCTTTTGCTCATGTTTGTCTCTCCCTCTTTTAAACTATATCCTTCTTCCTTGCTTTCTTCATTTCTTGAGAATCTACACATTAAAAGATACAACATTGGGAGATGGAGGTAGCACGATCCTTACATCAAGTCAAAAATTCCTTATTCCAATTGTCTTGGACACTTCATAAATTTTTCATTTTTCGATCTTCACAATCCAAGAACGATGTAGTAGACTAGAGTTATCGGTAACGCTATCAACATCCCGAAAATAACC
+>_77170
+AGCTCTGCCTCAAGGAATTGTCCCTTTTGTGTTTGCTAAAGAATATAATGTCCATCCAGATATACTTAGCACAGGGTGAGTTTTTACTGGCTTTACATATCTTATGTCTTACTTTTGCGCTTTTGTAACTTGCACATCATGCATATGAAAGTTGTACATTGTCATATGTAACAAAGCATCAAATGGTCATGTTTGAAGAGCAGAGATCCGTTGCAACTTTGCCATGCCTACTTTGTATCTTATGCATCAAAAGTTGTACATTGCTCCAAACATGCAATGCTTGTCAAAGAGTATAAGTAGCATCTTGATTTGAAAATTTACAAATCTTTAATACATGGTTTACATGTTTGTGTTGCAGGGTTATATTTGGAATGTTGATAGCACTACCAATAACACTGGTGTACTACATAGTGTTGGGGCTTTAAATGAGTGG
+>_88236
+TTTTTGTGCTAAAGAAGTAGACGCAACACTACTACTTTCTTTTCTTTTCATGGGAGAAGAATATACACAACACAACACAACACAAACAACAATTGGAGAGACAACAAAACAAACATTGATTTTACTTTACTTCCTGCCAATGTCTTCTTGTCAAATTACAATTCTCTCCCTCCCAACAATGACCCTCCCTCTCTAATGTCATCTCTTTTTACTCTCCACTAAAGTTAACAAAATGGTCATTTCACATGTTAGACAACCACAACCCAAAACAAACTTAAAACTTCAATTCTTCAAACAAGACAAGAGTCAAAGCCCACTCATTTAAAGCCCCAACACTATGTAGTACACCAGTGTTATTGGTAGTGCTATCAACATTCCAAATATAACCC
+>_93178
+TATAAAATAAAACATAAGATAAACTTAAGCTGTACAAAAATGTTTGCACTTACAAGCATGCAAGAACATAAAATATGTCTTGGAGTGTAGAGATCAATTTGTTATGCCTGATTGCCTCAGACGAGATGAAGTGTGAGAAATTGTGTGCAACAAACTCATCTATAGACTATACACATGCAATTTGTAGGCGTCCAAATTTTTTATGCTAAGCACTCTTATAAGAGCAACTCCAACATAAACAAGCACAAAAAATCTTTCATGTTACATGTCCCAGCATTTATACATGTAACATCCAATACTAGCTAGTTAGATCTTGGGCTGCAAATATTTTTATTAATTGCAGTGCCACAATTCACCCTTGCATCTCTCAGT
+>_123423
+CGAAACGATATTATTTGAGGAGTAATATAAAAATTTTTAATAATATAATTTAAAAAGTTGTATACATTAAAAATTGACATTTGCGCCACTTTCGACTCATTTTACCCGTTCCCTTTAAAGTTGCATATTTTTATTTGAGCCATTTAGACCGTATTACATAAAACACAACCCAAATAGACCCATTTATTCAAAACTGCCACCTCTATTTTCATTTATACCTAGACTAAACATAGCCATTCCTAGGCCTGCATCCGAGAGAATGGTAACTGAATTTTCGAGAATCTGTGGTTTC
+>_157256
+TGCTTCACGGTCCACTCCATTCGGGCCCGGTTGGTTCCCAAAGCTAAACTCATTCCGGCCAAAATCATCATAATCTTTAGTATGGGGCACCCCTCCGAGATCATTACCATACTCCCCACCTCTAAACACATGAATACCACCTTCTGATACAGGTGAAGCACTAGAACTCCACACAAACATATGAAGATCTTTACCACCACCACCACCACCACCACCGCCGCCGCCAAGATCGGGTTTT

data/test/target.fasta

@@ -0,0 +1,62 @@
+>AT2G39730.1|PACid:19639427
+MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLAVKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF
+>AT2G24270.4|PACid:19639899
+MAGTGLFAEILDGEVYKYYADGEWKTSSSGKSVAIMNPATRKTQYKVQACTQEEVNAVMELAKSAQKSWAKTPLWKRAELLHKAAAILKDNKAPMAESLVKEIAKPAKDSVTEVVRSGDLISYCAEEGVRILGEGKFLLSDSFPGNDRTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVSCLHMVHCFHLAGFPKGLISCITGKGSEIGDFLTMHPAVNCISFTGGDTGISISKKAGMIPLQMELGGKDACIVLDDADLDLVASNIIKGGFSYSGQRCTAVKVVLVMESVADELVEKVKAKVAKLTVGPPEENSDITAVVSESSANFIEGLVMDAKEKGATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVVPVLRINSVEEGINHCNASNFGLQGCVFTKDINKAILISDAMETGTVQINSAPARGPDHFPFQGLKDSGIGSQGVTNSINLMTKVKTTVINLPTPSYSMGDGFISRL
+>AT2G44920.2|PACid:19640483
+MVILSNVSLFSCCNISQKPSLFSPSSRSSHCPIRCSQSQEGKEVVTSPLRSVVWSLGEEVSKRSLFALVSASLFFVDPALAFKGGGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVTGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTLLCN
+>AT2G36370.1|PACid:19640825
+MSEILSYGSVKVRAHRTRLIQESSYFHGLLSGSFSESGLDHISVEWNLESFLNLLMCLYGYDIEITSSSFLPLFESALYFGVEKLLSICKNWLSVLASSNDNALPKVELSDLIQIWSFGLEHAGEFVPDLCVAYLAKNFMLVKSDKYFGNVPYELLMWCVKHPHLTVHSEMDLVDGLLIWLDAGGRLSDLPESSQDNTINLMEQVRFSLLPLWFIAGRSKSHGFSKFADQSIELVTKLMKMPSTCLVDSLTDGPPTDVRVRLTEYSEILDLSGCPQLNEASLLLSILPNSYFANLRWRKSLESFLKNPDDDERHQEQISHRTLPILSFESVKEIDISKCQRLDYKVVIKCFSKSFPSLRKLRAAYLLNIKVSTLLELLLNFRELTEVDLTVDVSPIIPVQASVFYSGQGHCLLSSITRLTLEGRSDICDMELRSISRVCESLCYLNIKGCALLSDACIASVIQRCKKLCSLIVCYTSFSENSILALCATISMTNEHMDINSVASNLQTLHMSKCEGISETSLLNLITHSQKMKSLCLRDTKVSDSVLCEFPGSTLEALDISNTTISWMALARVISRNPNLKTLKARGCKNLLQLEVDGRTDNFSPLVSGQEVFKCLSKGSGLEELEIGWGFSYFSFESLRPAASFLRVISVGLGASLGEDVLKLLPSTCPLLESIVLHFQEISDSALTSVLTSLKHLQELALSYCFGEISLQSFKFSMPNLRKLRLERVTRWMTNDDLLVLTQSCPNLTELSLVGCLHLTSDCQPIISAGWPGMISLHLEECGSITENGVASLYGCIALEDLFLRHNGSGIQKSFLLDATLKFPMLRLVSLDMCDAKEGGFDVPEEKEEGRSLSIVKISRCKSDRCSLGRRAAPMHRETLVMLWNGQTLTKTLLKQRL
+>AT2G42520.1|PACid:19641881
+MSASWADVADSENTGSGSSNQNSHPSRPAYVPPHLRNRPAASEPVAPLPANDRVGYGGPPSGSRWAPGGSGVGVGGGGGYRADAGRPGSGSGYGGRGGGGWNNRSGGWDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTSLARPLAELMQEANQEVPEWLTRYASRSSFGGGKNRRSGGRFGGRDFRREGSFGSGRGGYGGGGGGYGGGGGYGGGGGYGGGGGYGGGYGGASSGGYGGEPPSAWD
+>AT2G24860.1|PACid:19642080
+MTICMCCDSHLVAKSILNPWNSPRITKLGFVPVVRRFPATTTVKASAVDSPESSSNFAKRMDQAWIISQQPSPVGCSSCNSKGHVECKWCAGTGFFILGDNMLCQVPSRNTSCVICSGQGSASCSDCKGTGFRAKWLEKPPVPT
+>AT2G47840.1|PACid:19642428
+MASLCLSLHQTLTNPLSAPRCRPLSLSFPGSSTFSIRPSSRRATALTTRASYTPTPATERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPILNLYRSVPYASFVAFFGLYLGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQGGGFGMKAMMWGHTGVFVFSFMCFVYGVVSSLLGKTPYIPFVADAAGRQL
+>AT2G26610.1|PACid:19642441
+MCSSSDCILPGPPSRSNLSAADLSPSGLLAFASGSSVSLVDSRSLQLISSVSLPSPISCAFSTVTSVRWAPVPVQRDLFSSDLLIAVGDHLGRIALVDFRLCSVRLWLEQSCDSASARGKSLGCGGVQDLCWVLARPDSYVLAAITGPSSLSLYTDSGQLFWKYDASPEYLSCIRCDPFDSRHFCVLGLKGFLLSLKLLGTTENDVPTKEFQIQTDCSDLQKLEREVVASSSHSTCPASAVFPLYSAKFSFSPHWKHILFATFPRELFVFDLKYEAALYVVALPRGYAKFVDVLPDPSQEFLYCLHLDGRLSIWRRKEGEQVHVLCAIEEFMPTIGNSVPSPSLLTLLISQLDSTLQNIRTIHSDALLDSSELEISFDFNNDAFLLFKTHFISISDDGKIWSWILTFNGDEDSNPQTNENLIESPTNGNQDLHPNISFEITLVGQLQLLSSAVTVLAIPTPSMTATLARGGNFPAVVVPLVALGTEAGTIDVVDVSANAVAASFSAHTSSIRGLNWLGNSRLVSYSCSRVSKRTGGYVNKLVVTCLRSGVSRGFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKSPVMLRSLALPFTVLEWTLPTIPSIAQKSLSKQLSMSSNQEVNVTPSDIETPNASDSKAVAADALQDDASESFAFALVNGSLGVFEVYGRRIRDFRPKWPASSFISTDGLITAMAYRLPHVVTGDKLGNIRWWDVVSGNSSSFNTCKEGIKKIKFSPVFSGDISRGRITVLFYDNTFSIYDLDSPDPLAISLMRPQIPGTLILELDWLPLRTSKFDSLVLCVAGTDGSFRLVEVHLDEKMTTQIPPKERFRSVPLCTPMLLPTPHALLGVKPSWFNTSSTCIDKRPHSIPGRTSSSKDLRSFMIDFPPIGDPAVLEMFLKVLEPYRSEGCLLDDEKAKLYSSLVNKGCAARFAFAAAIFGETSEALFWLQLPSAMKHVVNKTASKSAKKQFEETATLSKTSSKGPSSTGFEKNGSMSEGQLRLMAFEQKDLWVCANERIPWHEKLEGEEAIQNRVHELVSVGNLEGAVSLLLSTSPDSSYFYPNALRAVALSSTVSKSLVELAVKVVAANMVRSDRSLSGTHLLCSVGRYQEACSQLQDAGCWTDSATLAATHLNGSDYARVLQRWAGHVVNIEHNLWRGVILYVAVGAFEEALAVFRKAERAETAAIFIMACRETLADSWSIDPKNEDVMVVTESYALYQRKLVHLCMDSPPSFH
+>AT4G23940.1|PACid:19646003
+MASIDNVFSLGTRFSIPENPKRSILKHATTSSFSARTQTRWRAPILRRSFTVLCELKTGSSSSGETNNSPAADDFVTRVLKENPSQVEPRYRVGDKLYNLKEREDLSKGTNAATGAFEFIKRKFDSKKKTETDKSEESVYLSDILREYKGKLYVPEQVFGPELSEEEEFEKNVKDLPKMSLEDFRKAMENDKVKLLTSKEVSGVSYTSGYRGFIVDLKEIPGVKSLQRTKWSMKLEVGEAQALLKEYTGPQYEIERHMTSWVGKVADFPNPVASSISSRVMVELGMVTAVIAAAAVVVGGFLASAVFAVTSFAFVTTVYVVWPIAKPFLKLFVGVFLGVLEKSWDYIVDVLADGGIFSRISDFYTFGGVASSLEMLKPILLVVMTMVLLVRFTLSRRPKNFRKWDLWQGIAFSQSKAEARVDGSTGVKFADVAGIDEAVDELQELVKYLKNPDLFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKENSDQLYNAATQERETTLNQLLIELDGFDTGKGVIFLGATNRRDLLDPALLRPGRFDRKIRVRPPNAKGRLDILKIHASKVKMSDSVDLSSYASNLPGWSGAKLAQLVQEAALVAVRKTHNSILQSDMDDAVDRLTVGPTRIGLELGHQGQCRRATTEVGVAITSHLLLRYENAKIERCDRVSIIPRGQTLSQVVFHRLDDESYMFGRLPQLLHRLQVLLGGRAAEEVIYGSDTSKASVDYLSDASWLARKILTIWNLENPMVIHGEPPPWRKRPQFVGPRLDFEGSLYDDYDLVEPPVNFNMDDEVAHRSEELISQMYNKTVSLLRQNQTALLKTVKVLLNQKEISGEAIDFILDHYPPQTPLNSLLQEQNPGSLPFVPEHLRRESGDFVLVNHSTDVNAQV
+>AT4G30870.1|PACid:19646942
+MDDERRVLCPENRGLAAYVLQKKQEYAEKPKGLSENLERTFVKGYRSVCDAKDPINTLKDLSQIKGFGKWMVKLMKGYFDTAVESSEQEDLPDNRAGKKANGKKRYIPQRNSVGYALLITLHRRTTNGKEFMRKQELIDAADANGLSHAPVGPEKGKGKAGLGHSKREWYSGWSCMTTLIQKGLVVKSSNPAKYMLTVEGREVANECILRSGLPDSVDILSVDEMDPTPQAKKTPNQNPTCSFTMREELPYVDPRCRAQSAIPSDILEKFTPFGYSKEQVVAAFREVSDGSGDKDPSTLWLSVMCHLRQAEVYNSCPDSRNSKKDSSGPFKSQIRQVDLEGSRAKKFRSCNDGSTLNPCSSGSSHAVKACSSSLASDGTKGITNIPRLPPLQFGETFEEAYDVILILDDREKFATKGSRSRNIVENICSEFNIKIEVRRLPVGDCIWIARHKYLETEYVLDFIAERKNVDDMRSSIRDNRYRDQKLRLQRSGFKKLIYILEGDPNHSDAAESIKTACFTTEILEGFDVLRTHGLGETLRKYGYLTKSIYQYYKLRVNDNDQSKGAASCPSFDSFVKRCQDLDKMTISDVFAIQLMQVPQVTEEIAIAVLDMYPTLLSLASAYSHLEADVSAQEEMLRNRSNNVICASASKNIFKLVWGE
+>AT4G35335.1|PACid:19646965
+MEYRKIKDEDDHDVASDIESVKGKSHTVASSNIAMATLGVGSSERINWKRKGVVTCALTILTSSQAILIVWSKRAGKYEYSVTTANFLVGTLKCALSLLALTRIWKNEGVTDDNRLSTTFDEVKVFPIPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKRKLSEIQWAGFILLCCGCTTAQLNSNSDRVLQTSLPGWTMAIVMALLSGFAGVYTEAIIKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVANKGFFHGYSFITLLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFNFHLSLAFFLGSTVVSVSVYLHSAGKLR
+>AT4G29380.1|PACid:19647069
+MGNKIARTTQVSATEYYLHDLPSSYNLVLKEVLGRGRFLKSIQCKHDEGLVVVKVYFKRGDSIDLREYERRLVKIKDVFLSLEHPHVWPFQFWQETDKAAYLVRQYFYSNLHDRLSTRPFLSLVEKKWLAFQLLLAVKQCHEKDICHGDIKCENVLLTSWNWLYLADFASFKPTYIPYDDPSDFSFFFDTRGQRLCYLAPERFYEHGGETQVAQDAPLKPSMDIFAVGCVIAELFLEGQPLFELAQLLAYRRGQHDPSQHLEKIPDPGIRKMILHMIQLEPEARLSAEDYLQNYVGVVFPNYFSPFLHTLYCCWNPLPSDMRVATCQGIFQEILKKMMENKSGDEIGVDSPVTSNPMNASTVQETFANHKLNSSKDLIRNTVNSKDEIFYSISDALKKNRHPFLKKITMDDLGTLMSLYDSRSDTYGTPFLPVEGNMRCEGMVLIASMLCSCIRNIKLPHLRREAILLLRSCSLYIDDDDRLQRVLPYVVALLSDPTAIVRCAAMETLCDILPLVRDFPPSDAKIFPEYIFPMLSMLPEDTEESVRICYASNIAKLALTAYGFLIHSFQLSDVGVLNELNSQQISTTPASETPSHLQKANGNAQLQQLRKTIAEVVQELVMGPKQTPNVRRALLQDIGELCFFFGQRQSNDFLLPILPAFLNDRDEQLRSVFFEKIVYVCFFVGQRSVEEYLLPYIDQALSDQTEAVIVNALECLSTLCKSSFLRKRALLQMIECVYPLLCYPSQWVRRAVVTFIAASSECLGAVDSYAFIAPVIRSYLSRLPASIASEEGLLSCLKPPVTREVVYRIFEKTRNPEFMAKQRKMWYSSSPQSKDWESVDLFDKDAGELNSVECRAEQKQSVEGKKQIKSASKQPEVQGKYAEKDAKLRIPRNPRPNASNTVELRDPVYPEKLQFSGFMAPYVSGANSFIEPENIPLYSFSMDKRAATNPPVASESSLQMNSLGMGSLSVPWMDSMSKSFNLASSVPVPKLISGSFHVGTNPKQFYRVVHEPESRENDQISSAISKFQDLGVSSSSKSASVTSEDASSPADLVGEPSLSRTSVPDSGWKPRGVLVAHLQEHRSAVNDIATSSDHSFFVSASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRGMCTTMLRNSTQVVVGASDGVIHMFSIDHISRGLGNVVEKYSGIVDIKKKDVKEGALVSLLNYTADSLSGPMVMYSTQNCGIHLWDTRSDLDAWTLKANPEEGYVSSLVTSPCGNWFVSGSSRGVLTLWDLRFRVPVNSWQYPIICPIEKMCLCFLPPSVSVSTTMKPLIYVAAGCNEVSLWNAEGGSCHQVLRVANYENETDVSEFQWKLPSNKVNPKPNHRQNMSSKYRIEELNEPPPRLPGIRSLLPLPGGDLLTGGTDLKIRRWDYSSPERSYCICGPSLKGVGNDDFYELKTNTGVQFVQETKRRPLATKLTAKAVLAAAATDTAGCHRDSVQSLASVKLNQRLLISSSRDGAIKVWK
+>AT4G12110.1|PACid:19648830
+MIPYATVEEASIALGRNLTRLETLWFDYSATKSDYYLYCHNILFLFLVFSLVPLPLVFVELARSASGLFNRYKIQPKVNYSLSDMFKCYKDVMTMFILVVGPLQLVSYPSIQMIEIRSGLPLPTITEMLSQLVVYFLIEDYTNYWVHRFFHSKWGYDKIHRVHHEYTAPIGYAAPYAHWAEVLLLGIPTFMGPAIAPGHMITFWLWIALRQMEAIETHSGYDFPWSPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYIYGTDKGYRFQKKLLEQIKESSKKSNKHNGGIKSD
+>AT1G30090.1|PACid:19651723
+MQRVRVSSQRAVVHKLGDSQMTLSPKFRVAASIQSTLFDRSSELELSLRGEPLIPGLPDDVALNCLLRVPVQSHVSSKSVCKRWHLLFGTKETFFAKRKEFGFKDPWLFVVGFSRCTGKIQWKVLDLRNLTWHEIPAMPCRDKVCPHGFRSVSMPREGTMFVCGGMVSDSDCPLDLVLKYDMVKNHWTVTNKMITARSFFASGVIDGMIYAAGGNAADLYELDCAEVLNPLDGNWRPVSNMVAHMASYDTAVLNGKLLVTEGWLWPFFVSPRGQVYDPRTDQWETMSMGLREGWTGTSVVIYDRLFIVSELERMKMKVYDPVTDSWETINGPELPEQICRPFAVNCYGNRVYVVGRNLHLAVGNIWQSENKFAVRWEVVESPERYADITPSNSQILFA
+>AT1G01060.1|PACid:19652702
+MDTNTSGEELLAKARKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQIRSHAQKFFTKLEKEAEVKGIPVCQALDIEIPPPRPKRKPNTPYPRKPGNNGTSSSQVSSAKDAKLVSSASSSQLNQAFLDLEKMPFSEKTSTGKENQDENCSGVSTVNKYPLPTKQVSGDIETSKTSTVDNAVQDVPKKNKDKDGNDGTTVHSMQNYPWHFHADIVNGNIAKCPQNHPSGMVSQDFMFHPMREETHGHANLQATTASATTTASHQAFPACHSQDDYRSFLQISSTFSNLIMSTLLQNPAAHAAATFAASVWPYASVGNSGDSSTPMSSSPPSITAIAAATVAAATAWWASHGLLPVCAPAPITCVPFSTVAVPTPAMTEMDTVENTQPFEKQNTALQDQNLASKSPASSSDDSDETGVTKLNADSKTNDDKIEEVVVTAAVHDSNTAQKKNLVDRSSCGSNTPSGSDAETDALDKMEKDKEDVKETDENQPDVIELNNRKIKMRDNNSNNNATTDSWKEVSEEGRIAFQALFARERLPQSFSPPQVAENVNRKQSDTSMPLAPNFKSQDSCAADQEGVVMIGVGTCKSLKTRQTGFKPYKRCSMEVKESQVGNINNQSDEKVCKRLRLEGEAST
+>AT1G09690.1|PACid:19652733
+MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY
+>AT1G35660.1|PACid:19655505
+MEQSAAPQPPTMPLPYLPSSVEASRDDLQCIGTMVIVPPKPVGFLCGSIPVLADNSFPASFTSALLPSQETVVTAPRYQMLPMETDLNLPPLLTDFPDNVLPLAAVKSRITGDISKEANVITSNLSKKCEALAVSGLVEYGDEIDVIAPVDILKQIFKIPYSKARVSIAVQRVGQTLVLNPGPDVEEGEKLIRRHNNQPKCTKNVDESLFLNFAMHSVRMEACDIPPTHREHTEKRSSSSALPAGENSHDNAPDDRLDKPAGSSKQSKQDGFICEKKKSKKNKAGVEPVRKNSQISEKIKSSGDSEKHSRGGSNEFLRVLFWQFHNFRMLLGSDLLLFSNEKYVAVSLHLWDVSEKVTPLTWLEAWLDNVMASVPELAICYHENGIVQGYELLKTDDIFILKGISEDGTPAFHPHVVQQNGLAVLRFLQSNCKEDPGAYWLYKSAGEDELQLFDLSIISKNHSSSVHNDSASSPSLIHSGRSDSMFSLGNLLYRVGHRLSLSVVPNDRNKCARFLTQCLNCLDAPDHLVVRAYAHEQFARLILNSDEESDLTFESNGVQREVKITDLEEEALDPVTIADHENETVTFSEDKFTEDHSVSNIVPLVSVRPKLEANVSLCKELLHSDSPDSHDTEGSAVNSSSDTSLDLGTLCQTTTSPISSKLSAINHVSQAIKSLRWTRQLQSSEQVDAFHDILPDFSKCSCGDPDCIEVCDIRKWLPTSKLDRKLWNLVLLLGESYLSLGEAYKEDKQLHQALNTVELACSIYGSMPQKFEETLFVSSMNKSLSLQSKFHERTQVEDLEAKSGPSDISVEELSSTRLFWAKVWMLVGDIYVQFHILKGQELSRRTKGTTNHLKMQSEVVKEVQRLKKKLTEYSQNCASCSLVNCSCKSDRASSGSSASSSNGSSARTVPHSRKHNRKLQSKNVASKVSRDVEDERVNFKVENKSRKEEEDTSGETKGAVRLEQNESNSKETPGAKKGGIFKYLKGSKTDDAESNLLAALNCYEETRRALQELPSNCSEFQSVLRKKGWVCNELGRNRLGSKELNKAEDAFADAIVAFKEVCDHTNVILINCNLGHGRRALAEEMVPKIEALELHRAFENAYQKALGTAKLEYSKSLRYYMAAKTELSVATAEASSVSDNLKVEVYTQLANTYLRFGMLLANEDTTAAAREQKNILENTHDSSSDGKSSDLRKREVLSASDAIREALALYESLGEIRKQEAAFAYLQLARYHKDCCLGFLETERQGSPRKPESNVIQRAKQYALLADRNWQKSMDFYGPENLPSMFLTILIERSALSSTVSNFWQLNFMLESALSRLLEGRHISKTYAESLRTEDPKLYTKFMAQLQMVLKRMLALSLPSEGANKSQTCGRSGDSGKLRELYKTSLKSTNLCDLNAMHALWTSSP
+>AT1G30300.1|PACid:19656499
+MMESSIPSENGSVTSDRDRSALIFLGTGCSSAVPNAMCLIQRSDNPCYVCSQSLSIPPEKNPNYRGNTSLLIDYCQSDGKHKYIQIDVGKTFREQVLRWFTLHKIPQVDSIILTHEHADAVLGLDDIRSVQPFSPTNDIDPTPIFVSQYAMESLAVKFPYLVQKKLKEGQEVRRVAQLDWRVIEEDCEKPFVASGLSFTPLPVMHGEDYVCLGFLFGEKSRVAYISDVSRFPPNTEYAISKSGGGQLDLLILDTLYKTGSHNTHLCFPQTLDTIKRLSPKRALLIGMTHEFDHHKDNEFLEEWSKREGISVKLAHDGLRVPIDL
+>AT1G76710.1|PACid:19657324
+MQFSCDPDQEGDELPQYEHIYQNDFSYRKHKKQKEEDISICECKFDFGDPDSACGERCLNVITNTECTPGYCPCGVYCKNQKFQKCEYAKTKLIKCEGRGWGLVALEEIKAGQFIMEYCGEVISWKEAKKRAQTYETHGVKDAYIISLNASEAIDATKKGSLARFINHSCRPNCETRKWNVLGEVRVGIFAKESISPRTELAYDYNFEWYGGAKVRCLCGAVACSGFLGAKSRGFQEDTYVWEDGDDRYSVDKIPVYDSAEDELTSEPSKNGESNTNEEKEKDISTENHLESTALNIQQQSDSTPTPMEEDVVTETVKTETSEDMKLLSQNSQEDSSPKTAIVSRVHGNISKIKSESLPKKRGRPFSGGKTKNVAQKHVDIANVVQLLATKEAQDEVLKYEEVKKEAAVRLSSLYDEIRPAIEEHERDSQDSVATSVAEKWIQASCNKLKAEFDLYSSVIKNIASTPIKPQDTKTKVAEAGNEDHIKLLEAK
+>AT3G44735.1|PACid:19659026
+MKQSLCLAVLFLILSTSSSAIRRGKEDQEINPLVSATSVEEDSVNKLMGMEYCGEGDEECLRRRMMTESHLDYIYTQHHKH
+>AT3G44735.2|PACid:19659027
+MKQSLCLAVLFLILSTSSSAIRRGKEDQEINPLVSATSVEEEHDSVNKLMGMEYCGEGDEECLRRRMMTESHLDYIYTQHHK
+>AT3G61770.1|PACid:19659581
+MESLTSNPSFACFSKTISHYPSRFSFVKLTSIQKLEASNNTLSLFCCKSSSNPKPDCNRRIKLNPLCVLRPIIRTIKGLVSSQSRQWMSRFRAYRDDTAAFSEDFAGDLKHNGGLGIALLSVTASAKIKISPFVATLSANPTFVSAVVAWFFAQSSKMVINFFIERKWDFRLLYASGGMPSSHSALCMALTTSVALCHGVADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEVLNLIIRDLFEGHPISQRKLKELLGHTPSQVLAGALVGIVIACFCCQGYLVSV
+>AT3G58460.2|PACid:19660450
+MTYGISSSQKIIQSLRSREESFTVGEKRELFAGVQTRVGQWWNAIPFLTSSVVVVCGVIYLICLLTGYDTFYEVCFLPSAIISRFQVYRFYTAIIFHGSLLHVLFNMMALVPMGSELERIMGSVRLLYLTVLLATTNAVLHLLIASLAGYNPFYQYDHLMNECAIGFSGILFSMIVIETSLSGVTSRSVFGLFNVPAKLYPWILLIVFQLLMTNVSLLGHLCGILSGFSYSYGLFNFLMPGSSFFTTIESASWMSSFIRRPKFIMCTGGNPSSYIPTYSAQNTTSSGFSTGNAWRSLSSWLPQREASNQSSEDSRFPGRGRTLSTARDPTAPAGETDPNLHARLLEDSSSPDRLSDATVNTVADSRQAPIANAAVLPQSQGRVAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQQA
+>AT3G14750.1|PACid:19664721
+MSGRNRGPPPPSMKGGSYSGLQAPVHQPPFVRGLGGGPVPPPPHPSMIDDSREPQFRVDARGLPPQFSILEDRLAAQNQDVQGLLADNQRLAATHVALKQELEVAQHELQRIMHYIDSLRAEEEIMMREMYDKSMRSEMELREVDAMRAEIQKIRADIKEFTSGRQELTSQVHLMTQDLARLTADLQQIPTLTAEIENTKQELQRARAAIDYEKKGYAENYEHGKIMEHKLVAMARELEKLRAEIANSETSAYANGPVGNPGGVAYGGGYGNPEAGYPVNPYQPNYTMNPAQTGVVGYYPPPYGPQAAWAGGYDPQQQQQQQPPPQGQGHR
+>AT3G12040.1|PACid:19664981
+MKTPARRSKRVNQEESETNVTTRVVLRTRKTNCSKTRAARVRPDYPLTRTTSESEMKLMPPEFFQIDALDLAPRLLGKFMRRDNVVLRITEVEAYRPNDSACHGRFGVTPRTAPVFGPGGHAYVYLCYGLHMMLNIVADKEGVGAAVLIRSCSPVSGMETIQERRGLKTDKPVLLNGPGKVGQALGLSTEWSHHPLYSPGGLELLDGGEDVEKVMVGPRVGIDYALPEHVNALWRFAVADTPWISAPKNTLKPL
+>AT5G48030.1|PACid:19669587
+MVPSNGAKVLRLLSRRCLSSSLIQDLANQKLRGVCIGSYRRLNTSVGNHANVIGDYASKSGHDRKWINFGGFNTNFGSTRSFHGTGSSFMSAKDYYSVLGVSKNAQEGEIKKAYYGLAKKLHPDMNKDDPEAETKFQEVSKAYEILKDKEKRDLYDQVGHEAFEQNASGGFPNDQGFGGGGGGGFNPFDIFGSFNGDIFNMYRQDIGGQDVKVLLDLSFMEAVQGCSKTVTFQTEMACNTCGGQGVPPGTKREKCKACNGSGMTSLRRGMLSIQTTCQKCGGAGQTFSSICKSCRGARVVRGQKSVKVTIDPGVDNSDTLKVARVGGADPEGDQPGDLYVTLKVREDPVFRREGSDIHVDAVLSVTQAILGGTIQVPTLTGDVVVKVRPGTQPGHKVVLRNKGIRARKSTKFGDQYVHFNVSIPANITQRQRELLEEFSKAEQGEYEQRTATGSSQ
+>AT5G13650.2|PACid:19669692
+MELSLSTSSASPAVLRRQASPLLHKQQVLGVSFASALKPGGGALRFPSRRPLPRPITCSASPSTAEPASVEVKKKQLDRRDNVRNIAIVAHVDHGKTTLVDSMLRQAKVFRDNQVMQERIMDSNDLERERGITILSKNTSITYKNTKVNIIDTPGHSDFGGEVERVLNMVDGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPEFVVNSTFELFIELNATDEQCDFQAIYASGIKGKAGLSPDDLAEDLGPLFEAIIRCVPGPNIEKDGALQMLATNIEYDEHKGRIAIGRLHAGVLRKGMDVRVCTSEDSCRFARVSELFVYEKFYRVPTDSVEAGDICAVCGIDNIQIGETIADKVHGKPLPTIKVEEPTVKMSFSVNTSPFSGREGKYVTSRNLRDRLNRELERNLAMKVEDGETADTFIVSGRGTLHITILIENMRREGYEFMVGPPKVINKRVNDKLLEPYEIATVEVPEAHMGPVVELLGKRRGQMFDMQGVGSEGTTFLRYKIPTRGLLGLRNAILTASRGTAILNTVFDSYGPWAGDISTRDLGSLVAFEDGTSTSYALASAQERGQMFVGSGVDVYKGQIVGIHQRPGDLGLNICKKKAATNIRSNKDVTVILDTPLTYSLDDCIEYIEEDELVEVTPSSIRMCKNQKMAKKGRQ
+>AT5G01030.1|PACid:19670273
+MAEKEGKASGTDNDNRVKTKRSSHSRRKECVNKSLEHNDELVKYMSKLPGYLQRIERGEESVHQSNVLNVGVLDWESLQRWKHGRAKGGEISGRSERKVSTIATTSTSGVVVPNDSANRCKIDDQVHTCSNLGKVKASRDLQYSLEPQLASRDSLNKQEIATCSYKSSGRDHKGVEPRKSRRTHSNRESTTGLSSEMGNSAGSLFRDKETQKRAGEIHAKEARERAKECVEKLDGDEKIIGDSEAGLTSEKQEFSNIFLLRSRKQSRSTLSGEPQISREVNRSLDFSDGINSSFGLRSQIPSSCPLSFDLERDSEDMMLPLGTDLSGKRGGKRHSKTTSRIFDREFPEDESRKERHPSPSKRFSFSFGRLSRNFSLKDISAGQPLSSSEDTIMSGSMRFDGSVCPSQSSNPENQNTHCRSRVSPLRRFLDPLLKPKASESVLPSKARSSSSNPKPITNSNVPLQDEKKQDASRTLAIFQLTIRNGIPLFQFVVDDNSSSSRSILGATMKSSDSSFKDDSVQYCTFYSVNEVKKKKSGSWLIHGHREKHCGFVYNIIGQMQLGNSMSVDISEQKSLITESVLFDESEQVKGRKEVAAVVIKKKPVEGSYTSFEETSVIIPGGVHSFPEKGAPSPLISRWRSGGLCDCGGWDVGCKLHVLSNKTVLHKFNQSFTLFDQEVSEQDSSPALAMTELKTGIYRVEFGSFVSPLQAFFVCVTVLTCASKAKTTGKSSSPMAPPLSPVGRV
+>AT5G16780.1|PACid:19670576
+MEVEKSKSRHEIREERADYEGSPVREHRDGRRKEKDHRSKDKEKDYDREKIRDKDHRRDKEKERDRKRSRDEDTEKEISRGRDKEREKDKSRDRVKEKDKEKERNRHKDRENERDNEKEKDKDRARVKERASKKSHEDDDETHKAAERYEHSDNRGLNEGGDNVDAASSGKEASALDLQNRILKMREERKKKAEDASDALSWVARSRKIEEKRNAEKQRAQQLSRIFEEQDNLNQGENEDGEDGEHLSGVKVLHGLEKVVEGGAVILTLKDQSVLTDGDVNNEIDMLENVEIGEQKRRNEAYEAAKKKKGIYDDKFNDDPGAEKKMLPQYDEAATDEGIFLDAKGRFTGEAEKKLEELRKRIQGQTTHTFEDLNSSAKVSSDYFSQEEMLKFKKPKKKKQLRKKDKLDLSMLEAEAVASGLGAEDLGSRKDGRRQAMKEEKERIEYEKRSNAYQEAIAKADEASRLLRREQVQPFKRDEDESMVLADDAEDLYKSLEKARRLALIKKEEAGSGPQAVAHLVASSTNQTTDDNTTTGDETQENTVVFTEMGDFVWGLQRENDVRKPESEDVFMEEDVAPKAPVEVKEEHPDGLTEVNDTDMDAAEDSSDTKEITPDENIHEVAVGKGLSGALKLLKDRGTLKEKVEWGGRNMDKKKSKLVGIVDDDGGKESKDKESKDRFKDIRIERTDEFGRTLTPKEAFRLLSHKFHGKGPGKMKEEKRMKQYQEELKLKQMKNSDTPSQSVQRMREAQAQLKTPYLVLSGHVKPGQTSDPQSGFATVEKDVPGSLTPMLGDRKVEHFLGIKRKSEPGNSDTPPKRPKP
+>AT5G13640.1|PACid:19671151
+MPLIHRKKPTEKPSTPPSEEVVHDEDSQKKPHESSKSHHKKSNGGGKWSCIDSCCWFIGCVCVTWWFLLFLYNAMPASFPQYVTERITGPLPDPPGVKLKKEGLKAKHPVVFIPGIVTGGLELWEGKQCADGLFRKRLWGGTFGEVYKRPLCWVEHMSLDNETGLDPAGIRVRAVSGLVAADYFAPGYFVWAVLIANLAHIGYEEKNMYMAAYDWRLSFQNTEVRDQTLSRMKSNIELMVSTNGGKKAVIVPHSMGVLYFLHFMKWVEAPAPLGGGGGPDWCAKYIKAVMNIGGPFLGVPKAVAGLFSAEAKDVAVARAIAPGFLDTDIFRLQTLQHVMRMTRTWDSTMSMLPKGGDTIWGGLDWSPEKGHTCCGKKQKNNETCGEAGENGVSKKSPVNYGRMISFGKEVAEAAPSEINNIDFRGAVKGQSIPNHTCRDVWTEYHDMGIAGIKAIAEYKVYTAGEAIDLLHYVAPKMMARGAAHFSYGIADDLDDTKYQDPKYWSNPLETKLPNAPEMEIYSLYGVGIPTERAYVYKLNQSPDSCIPFQIFTSAHEEDEDSCLKAGVYNVDGDETVPVLSAGYMCAKAWRGKTRFNPSGIKTYIREYNHSPPANLLEGRGTQSGAHVDIMGNFALIEDIMRVAAGGNGSDIGHDQVHSGIFEWSERIDLKL
+>AT5G27660.1|PACid:19673236
+MMNFLRRAVSSSKRSELIRIISVATATSGILYASTNPDARTRVSLAIPESVRESLSLLPWQISPGLIHRPEQSLFGNFVFSSRVSPKSEAPINDEKGVSVEASDSSSKPSNGYLGRDTIANAAARIGPAVVNLSVPQGFHGISMGKSIGSGTIIDADGTILTCAHVVVDFQNIRHSSKGRVDVTLQDGRTFEGVVVNADLQSDIALVKIKSKTPLPTAKLGFSSKLRPGDWVIAVGCPLSLQNTVTAGIVSCVDRKSSDLGLGGKHREYLQTDCSINAGNSGGPLVNLDGEVIGVNIMKVLAADGLGFSVPIDSVSKIIEHFKKSGRVIRPWIGLKMVELNNLIVAQLKERDPMFPDVERGVLVPTVIPGSPADRAGFKPGDVVVRFDGKPVIEIMDDRVGKRMQTCETRRRLRQFCNGNFTIFNQMC

data/test/target2.fasta

@@ -0,0 +1,76 @@
+>scaffold41641
+ATCCCGCGATTCTTAGTACTGCGTAAGTATTTGTACATATATACTGAATACTGATACAAACATGAAAATTTTTGTGTTGACGTATTTTCTTTGAATTTGATGATTATTTCAGGGTTATTTTCGGGATGTTGATAGCGTTACCGATAACTCTAGTCTACTACATCGTTCTTGGATTGTGAAGATCTAAAAAAGAAAAATTTATGAAGTGTCCAAGACAATTGGAATAAGGAATTTTTGACTTGATGCAAGGATCGTGCTACCTCCATCTCCCAA
+>scaffold41642
+ACCCTCCTCCATATCGCCATCGTGCAGGCCGCACTGCCTCAAGGGATTGTTCCTTTTGTTTTTGCAAAAGAGTACAATGTTCATCCCGCGATTCTCAGTACTGCGGTTATTTTTGGGATGTTGATAGCGTTACCGATAACTCTAGTCTACTACATCGTTCTTGGATTGTGAAGATCTAAAAAAGAAAAATTTATGAAGTGTCCAAGACAATTGGAATAAGGAATTTTTGACTTGATGCAAGGATCGTGCTACCTCCATCTCCCAA
+>scaffold78526
+TACATCCCTTTAAGCAAAGGGATTCCCATAACCAATGTGTTTGGTAAAGTTGATAGTGAAAAAAGTGTTATGGACCATTCTATACTGCCCTTTTTGGTGAGGTTGCTCCACGCGGCTAGGACCGCAAGGACAACGAGTTTCTGGAGCGTGTCGGCCGCGATGAACCGAAGGTTCATTTTGTAAGGGTTGTTGGAGGAAATGAAGTGAAAGGAGAGGAGGGGGACGNAAAGAGAGCTACAAATCTGTTGATCCCTGAGCATTGATCAGGGGTGAAGATCTTCCACCATTTCACCGAGCCGTAGGCTAGGATCATGGCGACATAGAGTGGAACGACGGCTGTGAAGACATGGTAAAGGTCCGAAGCCGTGATCATATTGAGAAATTGGA
+>scaffold87836
+GTGGTGGTGGTGGTGGTGGTAAAGATCTTCATATGTTTGTGTGGAGTTCTAGTGCTTCACCTGTATCAGAAGGTGGGATTCATGTGTTTAGAGGTGGGGAGTACGGTAATGATCATGGAGGGGTGCCCCATACTAAAGATTATGATGATTTTGGCCGGAACGAGTTTAGTTTTGGTAATCAACCAGGCCCAAATGGAGTGGACCGTGAAGCGTCGGTTCTATCTAAACTTGGGTCTAGCTCAACTGCAGAGCTCCACCCAAAGGCTAGCCCACATGGTGAAACCAAGCCCCCTTCCATGCCTCCTGCTAGTGTCATGACCAGACTCATTTTGATCATGGTGTGGCGCAAACTTATCAGAAATCCCAACACGTATTCGAGCTTAATTGGCCTCACATGGTCCTTGGTCTCCTTCAAGTGGAACGTTGAAATGCCTGCCATCGTTGCAAAATCCATAGCCATTTTATCCGATGCTGGTCTTGGCATGGCCATGTTTAGCCTCGGTTTGTTCATGGCGTTGCAACCAAAGATTATAGCTTGTGGAAACTCGGTTGCAACCTTTGCCATGGTGGTTCGTTTCTTGATTGGACCGGCGGTCATGGTAGGTGCATCACTGGCTGTTGGACTACATGGAACATTGCTACATGTTGCCATAGTTCAGGCAGCTCTGCCTCAAGGAATTGTCCCTTTTGTGTTTGCTAAAGAATATAATGTCCATCCAGATATACTTAGCACAGGGGTTATATTTGGAATGTTGATAGCACTACCAATTACTCTGGTGTACTACATTGTGTTGGGGCTTTAAATGAGTGGGCTTTGACTCTTGTCTTGTTTGAAGAAGTGAAGTTTAAGTTTGTTTTGGGTTGGGGTTGTCTAACAACATGTGAAATGACCATTTTGTTAATTTTAGTGGAGAGTAAAAAGAGATGACATTAGAGAGGGAGGGTCATTGTTGGGAGGGAGAGAATTGTAATTTGACAAGAAGACATTGGCAGGAAGTAAAGTAAAATCAATGTTTGTTTGTTGTCTCTCCAATTGTTGTTTGTATTGT
+>C2336898
+GCAGGGTACCCTGCACCCCCATGCCCATTCACCTTCACATTACTCCCACTTTCCTCATCATACCCTGCAAAATTCGACCCACGAGGACTCGCACCACTTTTCCCATTAACCATTGAGTAAAAATCAGTGTGATTGAAGCTCGAGCCCCTTGGTGTAGGGTTTCTTGACGACTGTAAAGAGTAAATTTCAGCATTTGTTAAGTTTGATGGCCGAGGGGTTATTGACACACCGGAGTTCATTCCGCCGTGTGACCGCCTTGAGAAGATCTCCGAATGAGAGCTTGCAGACTTCCGAACAGTCACATGAAGCTTCCCATCGTCCCCAACTTCAGCCTCTGTTTGCAATGGCTCTTTACCATCTAACGACAACACATCAGAATCAAC
+>contig-112109 405 0
+AAGTTATCGTTTATGTATTACGGGGACCGTAATGATTGCTGAATAGACTCCATTGCGGTCCCGTGGGGTGGGTACATCTTTTTAATGGAAAAAATCAACATCAATCTCATCAATTAGTTTGTTAAAAGTCGAGGTTCAATTTTTTATTTTGAAAATAAGAGAAATTGATTGAATAATTATAATTTTTCTAGTCAAAACAAGTTTAAAGTTTCAATACTTTGTGGAGACTAATGGCAAATAGAAATAGATTTTGTATCCGATCATAACATGAGTTTCACGAGTTAGGTTATAACTTGGTTGACCTCTGTTTTGTTTTGTTTTTTAATCTTTTGATATATTTATATTTTAAATTTACAATAAATAGTATAAATGTATAGAAAATAAGCACATCTAAATTATAAAATC
+>contig-233717 356 0
+TCCTGATGTTCTGAGCACTGCGGTGATATTTGGAATGATAATATCTTTGCCTATCACAATGCTGTATTACATCTTACTAGGTCTCTAAATGAAGCAAACGGAATTGGGAAACCAGAAAGAAGACTTGATCCATGGATATTCATATGCATATATAATTATACATATCAAGATAAAGGCATACGGTAACTACATATGTCAAACAAAGTTATTTAAGTAAGACTTCAATTTCACATTGATGTTTTGATAAGTTGATAATATGAGTGTTTGAGTAGCACAGTGGTTAGTAGTATTAAGTGTAGTTGTTCTACATTATACTTTCATAATATATATCTCTAGCATAGCTACGTCTTATTCTG
+>contig-96389 570 0
+AGGGAGTTTGATGGTGCAGATTGTGGTGCTTCAGTGCATCATTTGGTACACTTTGATGCTGTTTCTGTTTGAATACAGAGGTGCAAGATTGTTGATTGCTGAACAGTTTCCAGACACTGCTGGTTCGATTATCTCATTTAGGGTTGATTCTGATGTGTTGTCGTTAGATGGTAAAGAGCCATTGCAAACAGAGGCTGAAGTTGGGGACGATGGGAAGCTTCATGTGACTGTTCGGAAGTCTGCAAGTTCTCATTCGGAGATCTTCTCACGGCGGTCACACGGCGGAATGAACTCCGGTGTGTCATTAACCCCTCGTCCATCAAACTTAACAAATGCTGAAATTTACTCTTTACAGTCGTCAAGAAACCCTACACCAAGGGGCTCGAGCTTCAATCACACTGATTTTTACTCAATGGTTAATGGGAAAAGTGGTGCGAGTCCTCGTGGGTCGAATTTTGCAGGGTATGATGAGGAAAGTGGGAGTAATGTGAAGGTGAATGGGCATGGGGGTGCAGGGTACCCTGCTCCGGCGAATGCCGGAATCTTTTCTCCGGTAAGTGGGAAGAGGGG
+>contig-497662 553 0
+CAGAGACCCTTTTCTTCCCAAAACATCTCTCTCATGGACCATCAAACCTTCATTTAAACCCCAATTCCCACCTGGGTTTTCTTCTTCACCATCTTCCTTCACCTGGGTCCTCCTCCAATTTCTCAATATGATCACTGGTTCGGACCTTTACCATGTCTTCACAGCCGTGGTTCCACTCTATGTCGCCATGATCCTAGCCTACGGCTCGGTGAAATGGTGGAAGATCTTCACCCCTGATCAATGCTCAGGGATCAACAGATTTGTAGCTCTCTTTGCTGTCCCATTGCTCTCCTTTCATTTCATCTCAACAAACAACCCTTACACCATGAACACAAGGTTCATCGCCGCTGACACCCTTCAAAAACTCATCGTTCTTGTGGGTCTAGCCTTCTGGTCAAGATTAAGCGCTAGAGGCTCATTAGAATGGTCAATCACTCTGTTTTCTTTATCCACACTTCCCAACACACTTGTGATGGGAATCCCTCTTTTGAAAGGGATGTATGGTGACTTTTCAGGGAGTTTGATGGTGCAGATTGTGGTGCTTCAGTGCATC
+>contig-428810 267 0
+CTGCATTATTGTTGTTCTTTTAATACTAGAGTTTGTTTCTCTCATTGCATCTGTTCCTTCTGCTTCTTGATGGATCTCCTGCTCCTCTTGAATTAAAAGGTGAATTAATGATATCAGCATGATAACAAGATAAAAAGATTAATATATTATAGAACTGAGTGATGCAAGGGTGAATTGTGGCACTGCAATTAATAAAAATATTTGCAGCCCAAGATCTAACTAGCTAGTCTGGATGTTACATGTATAAATGCTGGGAAATGTAATACG
+>contig-219563 1305 0
+CGATATTTATGTTGTTATTTCCATAACTCTCCAAGTACTCTTCTCCGTTACCTTTTACGGGTGATATTGGAACTTTTAAATCTTTTGTAGTTGGTGGGTCGAGTGCTCCGTATTCACGAGCCGCGAATACATCAGAAACCGGGGAAGTGCTCGAGCTCCAAACAAACATGTGTAGATCGTTTGAACCTTCATCTGCTTTTTGCCCGTTAGCCTTTTTGGTTAACGGTATACTTGGTTTTCCAGTTGACGGAGAAAACATCCCAGGATTTGGTGCTGGGTAGTTATTACCACCCAGCACACCATGATGAAAACGAGACTTGTTAGAATTATTCCCACTGCCTTCCTCTTCATAGTTGGAATGACGGGGTGTGGGCCCTCTGGATACAGGAGGCCCATACACATCCGAAGCCCCGAAGTTCGAATTCCTTCCACCAACACCACCCGCCATAGAATAAAAATCATTATGGTTAAAACTCGACCCTCTTGGGGTAGGGTTTCTAGACGATTGCACAGAGTAAATCTCCGCATTCGTCAGATTCGACGGACGAGGGGTCCCAGACGCAAACCCCTGCGACCTCGAGAACACGTCGGATCTCGACGCGTTCGATTTCCGGACCGTCACGTGAATCTTTCCATCCTCTTTAACCTCGGCTTCCGTCTCCAACACTTCCCGTCCATCCAACGACATGATATCCGAATCAACATGAATCGAGGCGATAGCACCTGCGGTCCCCGGGAACTGCTCGGATATCAACAACCTAGCGCCGCGAAACTCGAACAAAAACAACATCAAAGTATACCAAATAATACATTGTAGAACAACAATCTGGACCATTAGGCTACCAGACTCACCACCATACATCCCTTTAAGCAAAGGGATTCCCATAACCAATGTGTTTGGTAAAGTTGATAGTGAAAAAAGTGTTATGGACCATTCTATACTGCCCTTTTTGGTGAGGTTGCTCCACGCGGCTAGGACCGCAAGGACAACGAGTTTCTGGAGCGTGTCGGCCGCGATGAACCGAAGGTTCATTTTGTAAGGGTTGTTGGAGGAAATGAAGTGAAAGGAGAGGAGGGGGACGGCGAAAAGGGCGACAAAGCGGTTGATGCCTGAGCATTGATCAGGGGTGAAGATCTTCCACCATTTGACGGAGCCGTAGGCTAAGATCATGGCGACGTAGAGCGGGACGACCGCGGTCATGACATGGTAGAAGTCTGAAAGAGTGATCATGATGAAGGGGAGAATGAAGTAATTAAGAATGGTGGTTTGAAGGTTTGAAGAGATGAAGAGGGATGTTAAGGAAG
+>contig-7932 510 0
+ATCTTTGGTTGCAACGCCATGAACAAACCGAGGCTAAACATGGCCATGCCAAGACCAGCATCGGATAAAATGGCTATGGATTTTGCAACAATGGCAGGCATTTCAACGTTCCACTTGAAGGAGACCAAGGACCATGTGAGGCCAATTAAGCTCGAATACGTGTTGGGATTTCTGATAAGTTTGCGCCACACCATGATCAAAATGAGTCTGGTCATGACACTAGCAGGAGGCATGGAAGTGGGCTTGGTTTCCCCATGTGGGCTAGCCTTTGGGTGGAGCTCTGCAGTTGAGCTAGACCCGAGTTTGGATAGAACCGATGCTTCACGGTCCACTCCATTCGGGCCTGGTTGGTTCCCAAAACTAAATTCGTTGCGGCCAAAATCATCATAATCTTTAGTATGGGGCACCCCTCCATGATCATTACCGTACTCCCCACCTCTAAACACATGAATCCCACCTTCTGATACAGGTGAAGCACTAGAACTCCACACAAACATATGAAGATCTTTA
+>contig-245882 614 0
+ATCATCACCATACATGGATTTTAAAAGTGGGATTCCCATAACAAGTGTGTTTGGGAGTGTAGAAAGTGAAAACATGGTAATAGCCCAATCCAAGTCTCCTTTTTTCGACAAATTTGTCCATAAAAACAAGACAATTAGTGTCAAAGTCTTTGAAACACCATCGGCTGCTATGAACTTGAGGTTCATTTTGTAAGGATTGATTCTTGAAATGAACTCAAAGGACAACAAAGGGACGGCGAAAATGGCTACAAATCTGTTGATGCCTGCACACTGTTGTGGTGAGAAAATGTTCCATTTTACAGAGGCGTAAGCTACGAACATGGTAATGTAAAGAGGAACAACTGCAGTAAGTACACTATACAAGTCACCAAAGTTGATCATTTCTGCTGGCTTGTTAAGTATTTGGAGGGAAAATGATATGTTTTGAAGCAGTTAAGTGGGAGTTAGTTAAGGCTGTAGAAGCATGGATTTTGATGTCTTGATAGGGCTTAAGAATGCATGGTTTTTTTGTGTGGCACAACTAACCACAGAACACTACACAAGTCACCAAAGCTGATTCCTTATATGGCCTCAATAATGCATTCTTGAGTTGTACGGTACAAGCAATGACGACA
+>contig-236838 594 0
+TGCACTGAAGCACCACAATCTGCACCATCAAACTCCCTGAAAAGTCACCATACATCCCTTTCAAAAGAGGGATTCCCATCACAAGTGTGTTGGGGAGTGTTGACAACGAAAACAGAGTAATCGACCATTCTAACGAGCCTCTGGCGCTCAATCTTGACCAGAAGGCTAGACCCACAAGAACGATGAGTTTTTGAAGGGTGTCAGCAGCGATGAACCTTGAGTTCATGGTGTAAGGATTGTTGGTTGAGATGAAGTGAAAGGAGAGCAATGGGACAGCAAAGAGAGCTACAAATCTGTTGATCCCAGAGCATTGATCAGGGGTGAAGATCTTCCACCATTTCACCGAGCCGTAGGCTAGGATCATGGCGACATAGAGTGGAACGACGGCTGTGAAGACATGGTAAAGGTCCGAAGCCGTGATCATATTGAGAAATTGGAAGATGACCCAGGTGAAAGAAGATGGTGAAGAAGAAAACCCAGGTGGGAATTGGGGGTAAATGAAGGTTATATGAAGGTATGATGAGGGTCCATGAGAGAGAGTAAAATGGTCTCTGGTTTTAAGGGGAAAGGAGGAGCAGAGAGATGTGATGTGTT
+>contig-430590 396 0
+GACAGTATTGATATCGACTTTGTTATGATTGCAGGCATATTAACATTCCATCTGAAACATACTAGAGACCAGACGAGACCGATTAAACTTGAATAAGTATTCGGGTTTCTAATCAGTTTCCTCCACACCATTATCAGTATCAGTCTGGTCATCACGCTCGTTGGTGGCATTGCATTGTTGCCAACAATGCCTGCGCCAGTCCCTTCAATGTTTATGTTGTTATTTCCGTAACCCTCCAAGTACTCTGCTCCGTTACCTTTTACGGGTGATATGGGAACTTTTAAATCTTTTGTAGTTGGCTGGTCGAGTGCTCCGTATTCACGAGCCGCGAATACATCAGAGACCGGGGAATTACTCGAGCTCCAAACAAACATGTGTAGATCATTTGAACCTTCG
+>contig-58203 379 0
+GTTCAAATGATCTACACATGTTTGTTTGGAGCTCGAGTAATTCCCCGGTCTCTGATGTATTCGCGGCTCGTGAATACGGAGCACTCGACCAGCAAACTACAAAAGATTTAAAAGGTAACGGAGAAGAGTACTTGGAGAGTTATGGAAATAACAACATAAACATCGAAGGGGCTGGCGCAGGCATTGTTGGCAACAATGTAATGCCTCCAACGAGTGTGATGACTAGACTGATACTGATAATGGTGTGGAGGAAACTGATTAGAAACCCGAATACTTATTCGAGTTTAATCGGTCTCGTCTGGTCTCTAGTATGTTTCAGATGGAATGTTAATATGCCTGCAATCATAACAAAGTCGATATCAATACTGTCTGATGCAGG
+>contig-104976 401 0
+TTTACTTTACTTCCTGCCAATGTCTTCTTGTCAAATTACAATTCTCTCCCTCCCAACAATGACCCACCCTCTCTAATGTCATCTCTTTTTACTCTCCACTAAAATTAACAAAATGGTCATTTCACATGTTGTTAGACATCCCCAACCCAAAACAAACTTAAACTTCACTTCTTCAAACAAGACAAGAGTCAAAGCCCACTCATTTAAAGCCCCAACACTATGTAGTACACCAGAGTAATTGGTAGAGCTATCAACATTCCAAATATAACCCCTGTGCTAAGTATATCTGGATGGACATTATACTCTTTAGCAAACACAAAAGGGACAATTCCTTGAGGCAGAGCTGCCTGAACTATGGCAACATGTAGCAATGTTCCATGTAGTCCAACAGCCAGTGATGC
+>contig-498074 549 0
+AAAAGATTCCGGCATTCGCCGGAGCAGGGTACCCTGCACCCCCATGACCCCCATTCACCTTCACATTACTCCCACTTTCCTCATCATACCCTGCAAAATTCGACCCACGAGGACTAGCACCACTTTTCCCATTAACCATTGAGTAAAAATCAGTGTGATTGAAGCTCGAGCCCCTTGGTGTTGGGTTTCTTGACGACTGTAAAGAGTAAATTTCAGCATTTGTTAAGTTTGATGGCCGAGGGGTTATTGACACACCGGAGTTCATTCCGCCGTGTGACCGCCTTGAGAAGATCTCCGAATGAGAGCTTGCAGACTTCCGAACAGTCACATGAAGCTTCCCATCGTCCCCAACTTCAGCCTCTGTCTGCAATGGCTCCTTACCATCTAACGACAACACATCAGAATCAACTCTAAAAGAAATAATCGAACCAGCAGTGTCTGGAAACTGCTCAGCGATCAACAATCTTGCACCTCTGTATTCAAACAGAAACAGCATCAAAGTGTACCAAATGATGCACTGAAGCACCACAATCTGCACCATCAAACTCC
+>contig-474480 309 0
+GTTATTTTTGGGATGTTGATAGCGTTACCGATAACTCTAGTCTACTACATCGTTCTTGGATTGTGAAGATCTAAAAAATGAAAATTTTATGAAGTGTCCAAGACAATTGGAATAAGGAATTTTTGACTTGATGTAAGGATCGTGCTACCTCCATCTCCCAATGTTGTATCTTTTAATGTGTAGATTCTCAAGAAATGAGGAAAGCAAGAAAGAAGATATAGTTTAAAAGAGGGGGAGACAAACATGAGCAAAAGAAGGAAATTTAATCTTTTTTTTTCTTCTTTTTTGGGGGAAAAAAAGAAAAATCTT
+>contig-357246 874 0
+GATATTCGAAAACACCACCCTAAAAAAACACTTCATCTTCTTCACATCCTGAAAACCTGCAAATCTCCATTGTCATCTCACCATGATCACTCTTTCAGACTTCTACCACGTCATGACCGCCGTAGTCCCCCTCTACGTCGCCATGATCCTCGCCTACGGCTCCGTCAAATGGTGGAAGATCTTCACCCCCGATCAATGCTCCGGCATCAACCGCTTTGTCGCCCTCTTCGCCGTCCCCCTCCTCTCCTTCCACTTCATCTCCACCAACAATCCCTACACCATGAACCTCAAATTCATCACCGCTGACACCCTCCAGAAGCTCGTTGTCCTCGCTGCCCTTGCCGCCCTCGCCAACCTCACCAAACTCGTTAGCCTCGAGTGGTCGATCACACTCTTTTCACTTTCGACTTTGCCCAATACCCTTGTTATGGGCATCCCTTTGCTTAAAGGGATGTATGGGGGTGACTCTGGGAGTTTAATGGTTCAGATTGTGGTTTTGCAGTGTATTATTTGGTATACTTTGATGTTGTTTTTGTTTGAGTTTCGCGGGGCCCGGATGCTCATCTCTGAGCAGTTTCCGGGCTCCGCGGGCGCGATCGGGTCGATACATGTCGACCCGGACGTCGTGTCGTTGGACGGGCGGCACATGTTGGAGACCGAGGCGGAGGTGAAGGAGGACGGGAAGCTTCGTGTTACGGTGCGGAAGTCGAACGCGTCGAGGTCGGACGTGGTTTCGAGACGGTCACATGGGTTTTCGGGCGTGACGCCTCGTCCGTCGAATCTGACGAATGCGGAGATTTACTCTCTGCAGTCGTCGAGAAACCCGACCCCGAGAGGGTCGAGTTTTAATCATAATGATTTTTATTCGATGGCT
+>contig-358147 1348 0
+GGAAAATACTACAAAATTACCATCCCCACCACCACCTTTGGAGCCTTAAAACACTTAACTCTTAAAACCTTCAAAGCACCAACATTCGCTAGTTCCCCTTGACGTACCATGATCAGTGTTTCAGATTTGTACCATGTGATGACGGCGGTCGTCCCGCTGTACGTGGCGATGATCTTAGCGTACGGGTCGGTCAAATGGTGGAAGATCTTCAGCCCTGATCAATGCTCAGGCATCAACCGGTTTGTCGCCCTTTTCGCCGTCCCCCTCCTCTCCTTTCACTTCATTTCCTCCAACAACCCTTACAAAATGAACCTTCGCTTCATCGCCGCCGACACCCTCCAAAAACTAGTCGTCCTCGCCGTCCTAGCCGCCTGGAGCAACCTTACTAAAAGGGGTAGTTTAGAATGGTCCATAACATTTTTTTCACTTTCAACTTTACCCAACACGTTGGTTATGGGGATCCCTTTGCTTAAAGGGATGTATGGTGGTGAGTCTGGTAGTCTAATGGTCCAAATTGTTGTCCTACAATGCATTATTTGGTATACTTTGATGTTGTTTTTGTTCGAGTTTCGCGGCGCCAGGTTGTTGTTATCCGAGCAGTTCCCTGGGACCGCCGGTGCCATCGCCTCGATTCATGTCGATTCCGATATCATGTCGTTGGATGGACGGCAAGTGTTGGAGACGGAAGCCGAGGTTAAAGAGGACGGAAAGCTTCACGTGACAGTCCGGAAGTCGAATGCGTCCAGATCCGACGTGTTCTCGAGAAGGTCGCAGGGGTTTTCGTCCACGACCCCTCGGCCGTCGAATCTAACGAATGCAGAGATTTACTCTCTGCAGTCGTCTAGAAACCCAACCCCGAGAGGGTCGAGTTTTAACCACAATGATTTTTATTCTATGGCGGGTGGTGTTGGTGGTAGGAATTCCAACTTCGGGGCGTCAGATGTGTATGGGCCTCCTGTATCCAGAGGGCCCACGCCCCGTCATTCCAACTATGAAGAGGAATGCAGTGTGAATAATGCTAACAAGTCTCGTTTCCATCACGGGGGGGTGCTGGGTGGAAATAACTATCCAGCACCAAATCCCGGGATGTTTTCTCCGTCAACAGGAAAACCAAGTATACCGTTAACCAAAAAGGCTAACGGGCAAAAAGCGGACGAAGGTTCAAATGATCTACACATGTTTGTTTGGAGCTCGAGTACTTCCCCGGTTTCTGATGTATTCGCGGCTCGTGAATACGGAGCACTCGACCCGCCAACTACAAAAGATTTAAAAGTTCCAATATCACCCGTAAAAGGTAACGGAGAAGAGTACTTGGAGAGTTATGGAAATAACAACATAAATATCGAAG
+>contig-492356 636 0
+GGTGATATTCGGCATGTTGATTGCGTTACCAATAACTCTAGTCTACTACATTCTTCTTGGTTTGTAAGGTGTATGATTAAGGTATAAAACATGGGAAAGAGGAAGAAATCTTTAAGACAGAATGTCGTTTGTTTGATTTGTTTAAGTCAAAAATTCGGTCATTGGTTTATACGTTAAGCGCGAACTGAATCAACACGAAGATGAAAATTTTGACTTGATTTGAAGCACTCGTCCTTGATCTAAGGTTCTTGCTACCCCTGAAACTACAACCCACAAATTAGATTCTATAGTTTTAAGAAAGCAATCAAGAGATTTATGGCTTTTGAAGAGGGAAACAAGGCAATATGACCATTTGATGGACTACAAGAAGAACAATTTAGTTGTATATTGGTTTGTTAGTGTTGTAACATATATGGTAATATTGTTTGTTTTTCTTTTAACATAATAATTACTTTAAAATTATTATGAGTAAAAGACGTGTATCGTAATATGGTTATTGGAATGTAGTTGTCTTTGTAATATAATGGTAAGATTTATGTTAGGTTGCAAATGAAGGTTTTTTTTGTTGGTTTAAAATCGACATGTGATAGACGATCATGTACCTTGTTTTGAATCGGATTTTAAAAATCACGGGTG
+>contig-525045 392 0
+TACATAAACTACATTAACTACGACGAGTTTAACATTTTGTTGAATAATATTAACTTGACTAAACAATGTGAACCAAATTTCATTTAAGCAACCACCAACCATCCTTTTCTATTTCTAGCAACTAACAACCTGAAAACTACTTAACGAACTACTTTCTAGCATCCGTGTTGACGTATTTTCCGCCAAAGTATGACGATGTCAACCTTGTCTATTTTAACCCCAATAGAATGTAGTAGACAAGCGTGATAGGTAACGCTATTAGCATTCCAAATATAACACCAGTACTGAGGATATCAGGATGAACGCTGTACTCCTTAGCAAAGACAAAGGGGACAATACCCTGTGGTAAAGCAGCCTGGACAATTGCAATGCGTAAAAGGACGCCACGTAGG
+>_9982
+TACTTTTGTTCTGGTCTATCAATTTTCCTGCATAATTTCATCCCACAAACACACACAACAAAAAAAACACACAAAGGCAAAAGATATTAAAAAAACCCCATCCCTTTTTGAGTTTTTGTACACTGCAAAAAACACTTGATGATCTTCTTCTTCTTCTTCTTCACAATCACATACCTTTGAAAACCTGCAAATCTCCATTGTCATCTCACCATGATCACTCTCTCAGATTTCTACCACGTCATGACCGCCGTGGTCCCCCTGTACGTGGCCATGATCCTGGCCTACGCCTCCGTGAAATGGTGGAAGATCTTCTCCCCCGATCAATGCTCCGGCATCAACCGCTTCGTCGCCCTCTTCGCCGTCCCCCTCCTCTCCTTCCACTTCATCTCCACCAACAATCCTTACCAAATGAACCTCAGATTCATCGCCGCTGACACCCTACAGAAGCTGGTGGTTCTCGTCGCCCTCGCCCTCGTCGCCAACCTCACCAAACTCGTTAGCCTCGAGTGGTCCATCACATTCTTTTCGCTTTCGACTCTGCCCAACACCCTTGTCATGGGCATCCCTTTGCTTAAAGGGATGTATGGGGGTGACTCTGGGAGCTTAATGGTTCAGATTGTTGTTTTGCAGTGTATTATTTGGTACACTTTGATGTTGTTTTTGTTTGAGTTCCGCGGGGCCCGCATGCTCATCTCTGAGCAGTTTCCGGGTTCCGCGGGGGCGATCGGGTCGATTCATGTCGACCCGGACGTCGTGTCGCTGGATGGACGACACGTGTTGGAGACGGAGACCGAGGTGAAGGAGGACGGGAAGCTTCGTGTTACGGTGAGGAAGTCGAACGCGTCGAGGTCGGACGTGGTTTCGAGACGGTCGCATGGGTTTTCGGGCGTGACGCCTCGCCCGTCGGATCTGACGAATGCGGAGATTTACTCTCTGCAGTCGTCGAGAAACCCGACCCCGAGAGGGTCGAGTTTTAATCATAATGATTTTTATTCGATGGCTGGGGGTGGTGGTGGCGGAGGGAGGAATTCGAACTTTGGGCCTTCGGATGTGTACGGGCCTCCGGTTTCCAGAGGCCCGACGCCTCGGTCTTCTAACTATGAAGGGGAAGGCGGAGGGAGTACTGCGGGTAATAAAACTCGTTTTCATCATGGGGTGATGGGTGGTAACTACCCAACACCGAATCCTGGGATGTTTTCCCCGTCAACAGGAAAACCGAGTGAACCGTTGAATAAAAAGGTTAACGGGCAAAAAATAGCAGACGAAGGTTCAAATGATCTACACATGTTTGTTTGGAGCTCGAGTAATTCCCCGGTCTCTGATGTATTCGC
+>_25713
+TGTTCTTTTAATACTAGAGTTTGTTTCTCTCATTGCATCTGTTCCTTCTGCTTCTTGATGGATCTCCTGCTCCTCTTGAATTAAAAGGTGAATTAATGATATCAGCATGATAACAAGATAAAAAGATTAATATATTATAGAACTGAGTGATGCAAGGGTGAATTGTGGCACTGCAATTAATAAAAATATTTGCAGCCCAAGATCTAACTAGCTAGTCTGGATGTTACATGTATAAATGCTGGGAAATGTAATACGATAAGAATTTTTGTGCTTATTTATGTTGGAGTTGCTCTTATAAGAGTGCTTAGCATAAAAAATTTGGACGCTTACAAATTGCATGTGTATAGTCTATAGATGAGTTTGTCGCACACAATTTCTCACACTTCATCTCTTGTGAGGCAACGAGGCATAACAAATTGATCTCTACACTGCAAGACATATTTTATGTTCTTGCATGCTTGTAAGTGCAAACATTTTTGTACAGCTTATGTTCAATTTTTTTTATTTTATATATACTAGTGCTTTTAAATGTTAAAATTTTGCATGGTTATAAGCCTGAACAACTAGATACAAATTTACACACATTCTTAAGCCATGTAGAAAAAAAGTGTGCAAATTATATATCTGCTGTACTGTTTCATGGCTACTAAGTTTAAATAAAAAGTTTTATCATAGAAGGTATGATCCCACTGCATCCTCTTGAATATCAACCCCACACATTCTTATTTGATCTGTTGGAGTGCCTTAAATGCAGATGTTTATTGCATTTGTTGCTTGTTATATAACTCCCCTATTACTATTAGGCTATAACTATATGAGGTTTACATTCAAGATTCAACATAAATAAATAAATAAAAACTATAAATACGTACCTGTGGCAGCAAATGACTGTATCATGTGAACTTCCCTTGCAGTTGACAGCTCAAACAGGAATAATAACAAATTATA
+>_36964
+CACACAAAAAAAAACACAAAGACAAAAGATATTCGAAAACACCACCCTAAAAAAACACTTCATCTTCTTCACATCCTGAAAACCTGCAAATCTCCATTGTCATCTCACCATGATCACTCTTTCAGACTTCTACCACGTCATGACCGCCGTAGTCCCCCTCTACGTCGCCATGATCCTCGCCTACGGCTCCGTCAAATGGTGGAAGATCTTCACCCCCGATCAATGCTCCGGCATCAACCGCTTTGTCGCCCTCTTCGCCGTCCCCCTCCTCTCCTTCCACTTCATCTCCACCAACAATCCCTACACCATGAACCTCAAATTCATCACCGCTGACACCCTCCAGAAGCTCGTTGTCCTCGCTGCCCTTGCCGCCCTCGCCAACCTCACCAAACTCGTTAGCCTCGAGTGGTCGATCACACTCTTTTCACTTTCGACTTTGCCCAATACCCTTGTTATGGGCATCCCTTTGCTTAAAGGGATGTATGGGGGTGACTCTGGGAGTTTAATGGTTCAGATTGTGGTTTTGCAGTGTATTATTTGGTATACTTTGATGTTGTTTTTGTTTGAGTTTCGCGGGGCCCGGATGCTCATCTCTGAGCAGTTTCCGGGCTCCGCGGGCGCGATCGGGTCGATACATGTCGACCCGGACGTCGTGTCGTTGGACGGGCGGCACATGTTGGAGACCGAGGCGGAGGTGAAGGAGGACGGGAAGCTTCGTGTTACGGTGCGGAAGTCGAACGCGTCGAGGTCGGACGTGGTTTCGAGACGGTCACATGGGTTTTTCTTGACTTCCACACTACTGTTGACTAAACTACATATA
+>_87167
+AGGTTTGTTCATGGCTTCACAACCAAAGCTTATAGCATGTGGGAAGAGATTAGCAGCATATGGGATGGTAGCAAGGTTTGTAGCAGGACCTGCTGTGATGGCGATTGCTTCTATAGCTGTAGGTCTAAGAGGCACAATCCTACAAGTTTCTATCGTACAAGCGTCTTTACCACAAGGGATTGTGCCATTTGTGTTTGCTCGGGAGTACAACCTCCATCCTGATGTTCTGAGCACTGCGGTGATATTTGGAATGATAATATCTTTGCCTATCACAATGCTGTATTACATCTTACTAGGTCTCTAAATGAAGCAAACGGAATTGGGAAACCAGAAAGAAGACTTGATCCATGGATATTCATATGCATATATAATTATACATATCAAGATAAAGGCATACGGTAACTACATATGTCAAACAAAGTTATTTAAGTAAGACTTCAATTTCACATTGATGTTTTGATAAGTTGATAATATGAGTGTTTGAGTAGCACAGTGGTTAGTAGTATTAAGTGTAGTTGTTCTACATTATACTTTCATAATCTATATCACTAGCAAAG
+>_90885
+TTGTGGTGCTTCAGTGCATCATTTGGTACACTTTGATGCTGTTTCTGTTTGAATACAGAGGTGCAAGATTGTTGATCGCTGAGCAGTTTCCAGACACTGCTGGTTCGATTATTTCTTTTAGAGTTGATTCTGATGTGTTGTCGTTAGATGGTAAGGAGCCATTGCAGACAGAGGCTGAAGTTGGGGACGATGGGAAGCTTCATGTGACTGTTCGGAAGTCTGCAAGCTCTCATTCGGAGATCTTCTCAAGGCGGTCACACGGCGGAATGAACTCCGGTGTGTCAATAACCCCTCGGCCATCAAACTTAACAAATGCTGAAATTTACTCTTTACAGTCGTCAAGAAACCCAACACCAAGGGGCTCGAGCTTCAATCACACTGATTTTTACTCAATGGTTAATGGGAAAAGTGGTGCTAGTCCTCGTGGGTCGAATTTTGCAGGGTATGATGAGGAAAGTGGGAGTAATGTGAAGGTGAATGGGGGTCATGGGGGTGCAGGGTACCCTGCTCCGGCGAATGCCGGAATCTTTTCTCCGGTGGGTGGG
+>_143664
+CCAAAAAAAATAGTGAAAGAAGAAAATTAATCATTAGATTTTATAATTTAGATGTGCTTATTTTCTATACATTTATACTATTTATTGTAAATTTAAAATATAAATATATCAAAAGATTAAAAAACAAAACAAAACAGAGGTCAACCAAGTTATAACCTAACTCGTGAAACTCATGTTATGATCGGATACAAAATCTATTTCTATTTGCCATTAGTCTCCACAAAGTATTGAAACTTTAAACTTGTTTTGACTAGAAAAATTATAATTATTCAATCAATTTCTCTTATTTTCAAAATAAAAAATTGAACCTCGACTTTTAACAAACTAATTGATGAGATTGATGTTGATTTTTTCCATTAAAAAGATGTACCCACCCCACGGGACCGCAATGGAGTCTATTCAGCAATCATTACGGTCCCCGTAA
+>_159544
+TCCATCCAGATATACTTAGCACAGGGTGAGTTTTTAATGACTTATACATATCTTATGTCCGTGCATTAATGACTTGTACATATCTTACTTTCGTGCTTTTGTAACTTGCACATCATGCATATGAAAGTTGTACATTGTCAATGTAACAAGTAAATGTGGCATCCAATGGTCATGTTTGAAGAGCAGAGATCCATTGCAACTTTCCCATATCTACTTGTATCCTATGCAATTAAAGTTGTACAATGCTCCAAACATGCAATACTTGTCAAAGAGTACAAGTAGTATCTTGATTTGAAAATGTACAATCTTTAAAGCATGCTTTACTTGTTTGTGTTGCAGGGTTATATTTGGAATGTTGATAGCACTACCAATTACTCTGGTGTACTACATTGTGTTGG
+>_199159
+GTAATTGGTAGAGCTATCAACATTCCAAATATAACCCCGCAAAACAAACATGTAAACCATGTATTAAAGATTTGTACATTTTCAAATCAAGATACTACTACTTATACTCTTTGACAAACATTGCATGTTCGGAGCAATGTACAACTTTTGATGCATAAGATACAAGTAGACATGGCAAAGTTGCAATGGATCTATGCTCTTCAAACATGACCATTAGATGCCACATTAATTTGTTACATTTGACAATGTGCAACTTTCATATGCATTATGTGCAAGTTACTAATGCAGGGAAACAAAATATGTACAAATCGTTAATGCACAAAAGTATTTAAAACTCACCCTGTGC
+>_199413
+AAAAAAACACACACACACACACACAAAGGGGAAAATACTACAAAATTACCATCCCCACCACCACCTTTGGAGCCTTAAAACACTTAACTCTTAAAACCTTCAAAGCACCAACATTCGCTAGTTCCCCTTGACGTACCATGATCAGTGTTTCAGATTTGTACCATGTGATGACGGCGGTCGTCCCGCTGTACGTGGCGATGATCTTAGCGTACGGGTCGGTCAAATGGTGGAAGATCTTCAGCCCTGATCAATGCTCAGGCATCAACCGGTTTGTCGCCCTTTTCGCCGTCCCCCTCCTCTCCTTTCACTTCATTTCCTCCAACAACCCTTACAAAATGAACCTTC
+>_203694
+GAAGGTTCATTTTGTAAGGGTTGTTGGAGGAAATGAAGTGAAAGGAGAGGAGGGGGACGGCGAAAAGGGCGACAAAGCGGTTGATGCCTGAGCATTGATCAGGGGTGAAGATCTTCCACCATTTGACGGAGCCGTAGGCTAAGATCATGGCGACGTAGAGCGGGACGACCGCGGTCATGACATGGTAGAAGTCTGAAAGAGTGATCATGATGAAGGGGAGAATGAAGTAATTAAGAATGGTGGTTTGAAGGTTTGAAGAGATGAAGAGGGATGTTAAGGAAGTGAAGTGTTTTGAGGCTCCAAAGGTGGTGGGGGCTTGTTTTGTAGTATTTTCCACTTTG
+>_278972
+CTCTGCTCCTCCTTTCCCCTTAAAACCAGAGACCCTTTTCTTCCCAAAACATCTCTCTCATGGACCATCAAACCTTCATTTAAACCCCAATTCCCACCTGGGTTTTCTTCTTCACCATCTTCCTTCACCTGGGTCCTCCTCCAATTTCTCAATATGATCACTGGTTCGGACCTTTACCATGTCTTCACAGCCGTGGTTCCACTCTATGTCGCCATGATCCTAGCCTACGGCTCGGTGAAATGGTGGAAGATCTTCACCCCTGATCAATGCT
+>_288182
+CGAGTATAATGTTCACCCAGAAATCCTGAGCACCAGCTAACTAGAAGAGGATTCGTTCAAGCAAATGATAAAAAGCTAGAAGGCACCAAGATATTTCAAGCCCAGGAATTAGAACACATCAGCATGATATCTCGTCATTCGTTGTAGTGAAGGGTTAAAGATCAGTACAAGATTACATAAATCTTGTAAAGTTCATGTCCAAAAAACCACCATTCTACGAGTCTGTTGTTGTATTAACTTGTCTATTTATGAACCTAGTTTACA
+>_307804
+CCCTCTTCCCTTTATATACAACTTCCCCACCCCCCCCCCACTTTCTAATTTCTCTCGCCGGAACTTCCATCTCCGTCAACGGTAAAACCGCCACAAATCACCCACATTCCGGTTACAAAACCGTCACAAAAGATAACAAACTCCCACTCTCACTCTCACTTTCCCATTTTACCCCCACCACCACCACAATGATCACCGCCCACGACTTCTACACCGTCATGTCCGCCATGGTGCCGTTATACGTCGCCAT
+>_350457
+GAAACCACAGATTCTTGAAAATTCAGTTACCATTCTCTCAGATGCAGGCCTAGGAATGGCTATGTTTAGTCTAGGTAAATATGAAAATAGAGAAGGCATTTTTGAATAAACGGGTCTATTTGGGTTGTGTTTTATCTAATACAGTCTAAATGGCTCAAATCAAAATATGCAACTGTAAAGGGAACGGGTCAAATGAGTCGAAAATGGCGCAAAAATCAATTTTTA
+>_362402
+CGAAGTTTGACAACCTCCCACCCGGAAACCCCATCATGGAGTAAAAAATCCGAGTGGTTAAAATTCGAACCTCGCGGGGTCGGATTCCTCGACGAGCTCAAACTATAAATTTCCGCCCCCGTAAGGTTCGACAGCCGGGGAGTCATCTGACTCCCCGACCCAAACCCTACCGACTTCCTCGACACATTCGACCTCCTCACCGTCACATGTAACTTCCCA

data/test/test_bin.rb

@@ -0,0 +1,17 @@
+#!/usr/bin/env  ruby
+
+require 'helper'
+
+class TestBinary < Test::Unit::TestCase
+
+  context 'crb-blast' do
+
+    should 'run binary' do
+      cmd = "bundle exec bin/crb-blast --help"
+      runner = CRB_Blast::Cmd.new(cmd)
+      runner.run
+      assert runner.status.success?
+    end
+
+  end
+end

data/test/test_test.rb

@@ -0,0 +1,99 @@
+#!/usr/bin/env	ruby
+
+require 'helper'
+
+class TestCRBBlast < Test::Unit::TestCase
+
+  context 'crb-blast' do
+
+    setup do
+      query = File.join(File.dirname(__FILE__), 'query.fasta')
+      target = File.join(File.dirname(__FILE__), 'target.fasta')
+      @blaster = CRB_Blast::CRB_Blast.new(query, target)
+      @dbs = @blaster.makedb
+      @run = @blaster.run_blast(1e-5, 6, false)
+      @load = @blaster.load_outputs
+      @recips = @blaster.find_reciprocals
+      @secondaries = @blaster.find_secondaries
+    end
+
+    teardown do
+      extensions  = ["blast", "nsq", "nin", "nhr", "psq", "pin", "phr"]
+      Dir["*"].each do |file|
+        extensions.each do |extension|
+          if file =~ /.*\.#{extension}$/
+            File.delete(file)
+          end
+        end
+      end
+    end
+
+    should 'raise error when files don\'t exist' do
+      query = File.join(File.dirname(__FILE__), 'not_query.fasta')
+      target = File.join(File.dirname(__FILE__), 'not_target.fasta')
+      assert_raise IOError do
+        blaster = CRB_Blast::CRB_Blast.new(query, target)
+      end
+    end
+
+    should 'setup should run ok' do
+      ans = @blaster != nil
+      assert_equal ans, true
+    end
+
+    should 'determine that the target is a protein sequence' do
+      prot = @blaster.target_is_prot
+      assert_equal @dbs, ['query', 'target']
+      assert_equal prot, true
+    end
+
+    should 'run blast' do
+      assert_equal @run, true
+    end
+
+    should 'load outputs' do
+      assert_equal @load, [15,15]
+    end
+
+    should 'find reciprocals' do
+      assert_equal @recips, 10
+    end
+
+    should 'check if contig has reciprocal hit' do
+      assert_equal @blaster.has_reciprocal?("scaffold3"), true
+    end
+
+    should 'not find fake scaffold name' do
+      assert_equal @blaster.has_reciprocal?("not_a_scaffold"), false
+    end
+
+    should 'get query results' do
+      count=0
+      @blaster.query_results.each_pair do |key, list|
+        list.each do |hit|
+          count+=1
+        end
+      end
+      cmd = "wc -l query_into_target.1.blast"
+      lines = `#{cmd}`.to_i
+      assert_equal count, lines
+    end
+
+    should 'output all reciprocal hits' do
+      a = @blaster.reciprocals
+      assert_equal a["scaffold3"][0].target, "AT3G44735.1"
+      assert_equal a["scaffold5"][0].target, "AT5G13650.2"
+    end
+
+    should 'run' do
+      blaster = CRB_Blast::CRB_Blast.new('test/query.fasta',
+                                         'test/target.fasta')
+      blaster.run 1, 1, false
+      assert blaster.reciprocals
+    end
+
+    should 'get number of reciprocals' do
+      assert_equal 11, @blaster.size
+    end
+  end
+end

data/test/test_test2.rb

@@ -0,0 +1,78 @@
+#!/usr/bin/env  ruby
+
+require 'helper'
+
+class Test2CRBBlast < Test::Unit::TestCase
+
+  context 'crb-blast' do
+
+    setup do
+      @blaster = CRB_Blast::CRB_Blast.new('test/query2.fasta', 'test/target2.fasta')
+      @dbs = @blaster.makedb
+      @run = @blaster.run_blast(1e-5, 6, false)
+      @load = @blaster.load_outputs
+      @recips = @blaster.find_reciprocals
+      @secondaries = @blaster.find_secondaries
+    end
+
+    teardown do
+      extensions  = ["blast", "nsq", "nin", "nhr", "psq", "pin", "phr"]
+      Dir["*"].each do |file|
+        extensions.each do |extension|
+          if file =~ /.*\.#{extension}$/
+            File.delete(file)
+          end
+        end
+      end
+    end
+
+    should 'setup2 should run ok' do
+      ans = @blaster != nil
+      assert_equal ans, true
+    end
+
+    should 'break input file into pieces' do
+      files = @blaster.split_input('test/query2.fasta', 4)
+      assert_equal 4, files.size
+      files.each do |file|
+        assert File.exist?(file)
+      end
+      # little teardown
+      files.each do |file|
+        File.delete(file)
+      end
+    end
+
+    should 'run blast should check if the databases exist yet' do
+      tmp = CRB_Blast::CRB_Blast.new('test/query2.fasta',
+                                     'test/target2.fasta')
+      assert_equal false, tmp.run_blast(10,1,false)
+    end
+
+    should 'load output should check if the databases exist' do
+      tmp = CRB_Blast::CRB_Blast.new('test/query2.fasta',
+                                     'test/target2.fasta')
+      assert_raise RuntimeError do
+        tmp.load_outputs
+      end
+    end
+
+    should 'find reciprocals' do
+      assert_equal 7, @recips
+    end
+
+    should 'add secondary hits' do
+      assert_equal 2, @secondaries
+    end
+
+    should 'get non reciprocal hits' do
+      count=0
+      @blaster.missed.each_pair do |key, value|
+        value.each do |i|
+          count+=1
+        end
+      end
+      assert_equal count,70
+    end
+  end
+end