cqm-validators 0.1.1 → 3.0.1
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- checksums.yaml +4 -4
- data/.github/PULL_REQUEST_TEMPLATE.md +23 -0
- data/.gitignore +3 -1
- data/.overcommit.yml +18 -0
- data/.rubocop.yml +74 -0
- data/.simplecov +12 -0
- data/.travis.yml +20 -0
- data/Gemfile +11 -3
- data/README.md +23 -6
- data/Rakefile +8 -6
- data/config/mongoid.yml +6 -0
- data/cqm_validators.gemspec +23 -14
- data/lib/base_validator.rb +20 -20
- data/lib/cqm_validators.rb +4 -2
- data/lib/cqm_validators/version.rb +3 -1
- data/lib/data_validator.rb +74 -79
- data/lib/measure_validator.rb +104 -107
- data/lib/performance_rate_validator.rb +43 -63
- data/lib/qrda_qdm_template_validator.rb +164 -311
- data/lib/reported_result_extractor.rb +137 -139
- data/lib/schema_validator.rb +20 -19
- data/lib/schematron/c_processor.rb +19 -19
- data/lib/schematron/java_processor.rb +66 -68
- data/lib/schematron/qrda/{cat_1_r4/HL7 QRDA Category I STU 4.sch → cat_1_r5_1/HL7 QRDA Category I STU 5.1.sch } +1559 -1964
- data/lib/schematron/qrda/{cat_1_r4 → cat_1_r5_1}/voc.xml +7 -2
- data/lib/schematron/qrda/cat_1_r5_2/HL7 QRDA Category I STU 5.2.sch +3961 -0
- data/lib/schematron/qrda/{cat_3_r2 → cat_1_r5_2}/voc.xml +7 -2
- data/lib/schematron_validator.rb +31 -32
- data/lib/validation_error.rb +11 -9
- data/lib/validators.rb +48 -105
- data/notice.md +9 -0
- metadata +99 -36
- data/lib/schematron/qrda/cat_1/HL7_CDAR2_QRDA_Category_I_2_12_16.sch +0 -4693
- data/lib/schematron/qrda/cat_1/voc.xml +0 -1177
- data/lib/schematron/qrda/cat_1_r2/QRDA Category I Release 2.sch +0 -4069
- data/lib/schematron/qrda/cat_1_r2/voc.xml +0 -1065
- data/lib/schematron/qrda/cat_1_r3_1/HL7 QRDA Category I STU 3.1.sch +0 -3573
- data/lib/schematron/qrda/cat_1_r3_1/HL7 QRDA Category III STU 1.1.sch +0 -464
- data/lib/schematron/qrda/cat_1_r3_1/QRDA Category I STU Release 3.1.sch +0 -5394
- data/lib/schematron/qrda/cat_1_r3_1/voc.xml +0 -1229
- data/lib/schematron/qrda/cat_3/QRDA Category III.sch +0 -675
- data/lib/schematron/qrda/cat_3/voc.xml +0 -21
- data/lib/schematron/qrda/cat_3_r1_1/HL7 QRDA Category III STU 1.1.sch +0 -528
- data/lib/schematron/qrda/cat_3_r1_1/voc.xml +0 -8
- data/lib/schematron/qrda/cat_3_r2/HL7 QRDA Category III STU 2.sch +0 -677
@@ -1162,8 +1162,8 @@
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<code value="cancelled" displayName="Cancelled" codeSystemName="ActStatus" codeSystem="2.16.840.1.113883.5.14" />
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</system>
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<system valueSetOid="2.16.840.1.113883.3.249.14.103" valueSetName="QRDA-I CMS Program Name ">
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-
<code value="
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-
<code value="
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+
<code value="MIPS_INDIVIDUAL" displayName="MIPS Individual" codeSystemName="CMS Program" codeSystem="2.16.840.1.113883.3.249.7" />
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+
<code value="MIPS_GROUP" displayName="MIPS Group" codeSystemName="CMS Program" codeSystem="2.16.840.1.113883.3.249.7" />
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<code value="CEC" displayName="Comprehensive End-Stage Renal Disease CARE Initiative" codeSystemName="CMS Program" codeSystem="2.16.840.1.113883.3.249.7" />
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<code value="HQR_EHR" displayName="Hospital Quality Reporting for the EHR Incentive Program" codeSystemName="CMS Program" codeSystem="2.16.840.1.113883.3.249.7" />
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<code value="HQR_IQR" displayName="Hospital Quality Reporting for the Inpatient Quality Reporting Program" codeSystemName="CMS Program" codeSystem="2.16.840.1.113883.3.249.7" />
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@@ -1183,4 +1183,9 @@
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<code value="SPRF" displayName="secondary performer" codeSystemName="HL7ParticipationType" codeSystem="2.16.840.1.113883.5.90" />
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<code value="PPRF" displayName="primary performer" codeSystemName="HL7ParticipationType" codeSystem="2.16.840.1.113883.5.90" />
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</system>
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+
<system valueSetOid="2.16.840.1.113883.1.11.20549" valueSetName="Criticality Observation">
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+
<code value="CRITL" displayName="Low Criticality" codeSystemName="Observation Value" codeSystem="2.16.840.1.113883.5.1063" />
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+
<code value="CRITH" displayName="High Criticality" codeSystemName="Observation Value" codeSystem="2.16.840.1.113883.5.1063" />
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+
<code value="CRITU" displayName="Unable to assess criticality" codeSystemName="Observation Value" codeSystem="2.16.840.1.113883.5.1063" />
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</system>
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</systems>
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data/lib/schematron_validator.rb
CHANGED
@@ -1,38 +1,37 @@
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-
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module Schematron
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NAMESPACE = {"svrl" => "http://purl.oclc.org/dsdl/svrl"}
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DIR = File.expand_path("../../", __FILE__)
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ISO_SCHEMATRON = File.join(DIR, 'lib/schematron/iso-schematron-xslt1/iso_svrl_for_xslt1.xsl')
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# frozen_string_literal: true
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-
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-
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module CqmValidators
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module Schematron
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NAMESPACE = { 'svrl' => 'http://purl.oclc.org/dsdl/svrl' }.freeze
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DIR = File.expand_path('..', __dir__)
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ISO_SCHEMATRON = File.join(DIR, 'lib/schematron/iso-schematron-xslt1/iso_svrl_for_xslt1.xsl')
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-
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-
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include Schematron::CProcessor
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else
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require_relative 'schematron/java_processor'
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include Schematron::JavaProcessor
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end
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class Validator
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include BaseValidator
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-
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-
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-
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-
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if RUBY_PLATFORM != 'java'
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require_relative 'schematron/c_processor'
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include Schematron::CProcessor
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else
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require_relative 'schematron/java_processor'
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include Schematron::JavaProcessor
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end
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-
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-
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build_error(error, '/', data[:file_name])
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end
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end
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-
errors = get_errors(document).root.xpath("//svrl:failed-assert",NAMESPACE).map do |el|
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build_error(el.xpath('svrl:text',NAMESPACE).text, el['location'], data[:file_name])
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end
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errors.uniq{|e| "#{e.location}#{e.message}"}
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-
end
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+
def initialize(name, schematron_file)
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@name = name
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@schematron_file = schematron_file
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end
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-
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-
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def validate(document, data = {})
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file_errors = get_document(document).errors.select { |e| e.fatal? || e.error? }
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file_errors&.each do |error|
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build_error(error, '/', data[:file_name])
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end
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errors = get_errors(document).root.xpath('//svrl:failed-assert', NAMESPACE).map do |el|
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build_error(el.xpath('svrl:text', NAMESPACE).text, el['location'], data[:file_name])
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end
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errors.uniq { |e| "#{e.location}#{e.message}" }
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+
end
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end
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end
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end
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data/lib/validation_error.rb
CHANGED
@@ -1,10 +1,12 @@
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# frozen_string_literal: true
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class ValidationError
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end
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attr_accessor :message, :location, :file_name, :validator
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def initialize(params = {})
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@location = params[:location]
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@message = params[:message]
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@validator = params[:validator]
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@file_name = params[:file_name]
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end
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end
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data/lib/validators.rb
CHANGED
@@ -1,3 +1,5 @@
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+
# frozen_string_literal: true
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+
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require_relative 'validation_error'
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require_relative 'base_validator'
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require_relative 'schema_validator'
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@@ -8,129 +10,70 @@ require_relative 'performance_rate_validator'
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require_relative 'qrda_qdm_template_validator'
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module CqmValidators
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-
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-
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class Cat1Measure < MeasureValidator
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include Singleton
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-
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def initialize()
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super("2.16.840.1.113883.10.20.24.3.97")
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end
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-
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end
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class Cat3Measure < MeasureValidator
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include Singleton
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-
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def initialize()
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super("2.16.840.1.113883.10.20.27.3.1")
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end
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-
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-
end
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-
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class CDA < Schema::Validator
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include Singleton
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-
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def initialize
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super("CDA SDTC Validator", File.join(BASE_DIR, CDA_SDTC_SCHEMA))
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end
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-
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end
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class Cat1 < Schematron::Validator
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include Singleton
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-
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def initialize
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super("QRDA Cat 1 R3 Validator", File.join(BASE_DIR, QRDA_CAT1_R3_SCHEMATRON))
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end
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-
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end
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-
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class Cat1R2 < Schematron::Validator
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include Singleton
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-
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def initialize
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super("QRDA Cat 1 Validator", File.join(BASE_DIR, QRDA_CAT1_SCHEMATRON))
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end
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-
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-
end
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-
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class Cat1R31 < Schematron::Validator
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include Singleton
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-
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def initialize
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super("QRDA Cat 1 Validator", File.join(BASE_DIR, QRDA_CAT1_R3_1_SCHEMATRON))
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end
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-
|
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+
CDA_SDTC_SCHEMA = 'lib/schema/infrastructure/cda/CDA_SDTC.xsd'
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QRDA_CAT1_R5_SCHEMATRON = 'lib/schematron/qrda/cat_1_r5/HL7 QRDA Category I STU 5.sch'
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QRDA_CAT1_R51_SCHEMATRON = 'lib/schematron/qrda/cat_1_r5_1/HL7 QRDA Category I STU 5.1.sch'
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QRDA_CAT1_R52_SCHEMATRON = 'lib/schematron/qrda/cat_1_r5_2/HL7 QRDA Category I STU 5.2.sch'
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QRDA_CAT3_21SCHEMATRON = 'lib/schematron/qrda/cat_3_r2_1/HL7 QRDA Category III STU 2.1.sch'
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BASE_DIR = File.expand_path('..', __dir__)
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class Cat1Measure < MeasureValidator
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include Singleton
|
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+
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def initialize
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super('2.16.840.1.113883.10.20.24.3.97')
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end
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end
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27
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-
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-
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-
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def initialize
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super("QRDA Cat 1 Validator", File.join(BASE_DIR, QRDA_CAT1_R4_SCHEMATRON))
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-
end
|
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+
class Cat3Measure < MeasureValidator
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+
include Singleton
|
84
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31
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def initialize
|
32
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+
super('2.16.840.1.113883.10.20.27.3.1')
|
85
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end
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+
end
|
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35
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|
87
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-
|
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-
|
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-
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def initialize
|
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super("QRDA Cat 1 Validator", File.join(BASE_DIR, QRDA_CAT1_R5_SCHEMATRON))
|
92
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-
end
|
36
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+
class CDA < Schema::Validator
|
37
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+
include Singleton
|
93
38
|
|
39
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+
def initialize
|
40
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+
super('CDA SDTC Validator', File.join(BASE_DIR, CDA_SDTC_SCHEMA))
|
94
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end
|
42
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+
end
|
95
43
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|
96
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-
|
97
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-
|
44
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+
class Cat1R5 < Schematron::Validator
|
45
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+
include Singleton
|
98
46
|
|
99
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-
|
100
|
-
|
101
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-
end
|
47
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+
def initialize
|
48
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+
super('QRDA Cat 1 Validator', File.join(BASE_DIR, QRDA_CAT1_R5_SCHEMATRON))
|
102
49
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end
|
50
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+
end
|
103
51
|
|
104
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-
|
105
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-
|
52
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+
class Cat1R51 < Schematron::Validator
|
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+
include Singleton
|
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54
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|
107
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-
|
108
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-
|
109
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-
end
|
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+
def initialize
|
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+
super('QRDA Cat 1 Validator', File.join(BASE_DIR, QRDA_CAT1_R51_SCHEMATRON))
|
110
57
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end
|
58
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+
end
|
111
59
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|
112
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-
|
113
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-
|
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class Cat1R52 < Schematron::Validator
|
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include Singleton
|
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|
115
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-
|
116
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-
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117
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-
end
|
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def initialize
|
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super('QRDA Cat 1 Validator', File.join(BASE_DIR, QRDA_CAT1_R52_SCHEMATRON))
|
118
65
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end
|
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+
end
|
119
67
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|
120
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-
|
121
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-
|
68
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+
class Cat3R21 < Schematron::Validator
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include Singleton
|
122
70
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|
123
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-
|
124
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-
|
125
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-
end
|
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+
def initialize
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super('QRDA Cat 3 Validator', File.join(BASE_DIR, QRDA_CAT3_21SCHEMATRON))
|
126
73
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end
|
74
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end
|
127
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|
128
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-
|
129
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-
|
130
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-
|
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#def initialize
|
132
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# super("Performance Rate Validator", File.join(BASE_DIR, CDA_SDTC_SCHEMA))
|
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-
#end
|
134
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-
|
135
|
-
end
|
76
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+
class Cat3PerformanceRate < PerformanceRateValidator
|
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include Singleton
|
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+
end
|
136
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end
|
data/notice.md
ADDED
@@ -0,0 +1,9 @@
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+
NOTICE
|
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+
======
|
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This (software/technical data) was produced for the U. S. Government under Contract Number HHSM-500-2012-00008I, and is subject to Federal Acquisition Regulation Clause 52.227-14, Rights in Data-General.
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4
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+
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No other use other than that granted to the U. S. Government, or to those acting on behalf of the U. S. Government under that Clause is authorized without the express written permission of The MITRE Corporation.
|
6
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+
|
7
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+
To the extent necessary MITRE hereby grants express written permission to use, reproduce, distribute, modify, and otherwise leverage this software to the extent permitted by the Apache 2.0 license.
|
8
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+
|
9
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For further information, please contact The MITRE Corporation, Contracts Management Office, 7515 Colshire Drive, McLean, VA 22102-7539, (703) 983-6000.
|
metadata
CHANGED
@@ -1,15 +1,15 @@
|
|
1
1
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--- !ruby/object:Gem::Specification
|
2
2
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name: cqm-validators
|
3
3
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version: !ruby/object:Gem::Version
|
4
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-
version: 0.1
|
4
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+
version: 3.0.1
|
5
5
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platform: ruby
|
6
6
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authors:
|
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7
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- Laura
|
8
8
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- Michael O'Keefe
|
9
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-
autorequire:
|
9
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+
autorequire:
|
10
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bindir: exe
|
11
11
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cert_chain: []
|
12
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-
date:
|
12
|
+
date: 2020-11-18 00:00:00.000000000 Z
|
13
13
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dependencies:
|
14
14
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- !ruby/object:Gem::Dependency
|
15
15
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name: nokogiri
|
@@ -17,42 +17,42 @@ dependencies:
|
|
17
17
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requirements:
|
18
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- - "~>"
|
19
19
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- !ruby/object:Gem::Version
|
20
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-
version: 1.10
|
20
|
+
version: '1.10'
|
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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name: bundler
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requirements:
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version: '0'
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type: :development
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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version: '
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version: '0'
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name:
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name: byebug
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requirement: !ruby/object:Gem::Requirement
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requirements:
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version: '0'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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version: '
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version: '0'
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name: minitest
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requirement: !ruby/object:Gem::Requirement
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version: '5.0'
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name: minitest-reporters
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: '0'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: '0'
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- !ruby/object:Gem::Dependency
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name: mongoid
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requirement: !ruby/object:Gem::Requirement
|
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requirements:
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- - ">="
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version: '0'
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type: :development
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prerelease: false
|
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version_requirements: !ruby/object:Gem::Requirement
|
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requirements:
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- - ">="
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|
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version: '0'
|
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|
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name: overcommit
|
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requirement: !ruby/object:Gem::Requirement
|
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requirements:
|
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- - ">="
|
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- !ruby/object:Gem::Version
|
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version: '0'
|
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type: :development
|
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prerelease: false
|
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version_requirements: !ruby/object:Gem::Requirement
|
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requirements:
|
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+
- - ">="
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- !ruby/object:Gem::Version
|
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version: '0'
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|
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name: rake
|
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requirement: !ruby/object:Gem::Requirement
|
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requirements:
|
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+
- - ">="
|
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- !ruby/object:Gem::Version
|
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+
version: 12.3.3
|
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+
type: :development
|
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+
prerelease: false
|
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+
version_requirements: !ruby/object:Gem::Requirement
|
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requirements:
|
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- - ">="
|
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- !ruby/object:Gem::Version
|
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version: 12.3.3
|
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- !ruby/object:Gem::Dependency
|
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+
name: rubocop
|
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+
requirement: !ruby/object:Gem::Requirement
|
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requirements:
|
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- - "~>"
|
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|
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version: '0.93'
|
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type: :development
|
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prerelease: false
|
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+
version_requirements: !ruby/object:Gem::Requirement
|
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+
requirements:
|
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- - "~>"
|
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- !ruby/object:Gem::Version
|
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version: '0.93'
|
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|
description: new cqm validator library
|
71
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|
email:
|
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|
- laclark@mitre.org
|
@@ -75,8 +145,12 @@ executables: []
|
|
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|
extensions: []
|
76
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|
extra_rdoc_files: []
|
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|
files:
|
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|
-
- ".
|
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|
+
- ".github/PULL_REQUEST_TEMPLATE.md"
|
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|
- ".gitignore"
|
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|
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- ".overcommit.yml"
|
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- ".rubocop.yml"
|
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|
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- ".simplecov"
|
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|
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- ".travis.yml"
|
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|
- Gemfile
|
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155
|
- LICENSE.txt
|
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156
|
- QRDA_Schematron_License.txt
|
@@ -84,6 +158,7 @@ files:
|
|
84
158
|
- Rakefile
|
85
159
|
- bin/console
|
86
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|
- bin/setup
|
161
|
+
- config/mongoid.yml
|
87
162
|
- cqm_validators.gemspec
|
88
163
|
- lib/base_validator.rb
|
89
164
|
- lib/cqm_validators.rb
|
@@ -127,34 +202,23 @@ files:
|
|
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202
|
- lib/schematron/iso-schematron-xslt2/sch-messages-nl.xhtml
|
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|
- lib/schematron/iso-schematron-xslt2/schematron-skeleton-api.htm
|
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204
|
- lib/schematron/java_processor.rb
|
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|
-
- lib/schematron/qrda/cat_1/HL7_CDAR2_QRDA_Category_I_2_12_16.sch
|
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|
-
- lib/schematron/qrda/cat_1/voc.xml
|
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|
-
- lib/schematron/qrda/cat_1_r2/QRDA Category I Release 2.sch
|
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|
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- lib/schematron/qrda/cat_1_r2/voc.xml
|
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|
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- lib/schematron/qrda/cat_1_r3_1/HL7 QRDA Category I STU 3.1.sch
|
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|
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- lib/schematron/qrda/cat_1_r3_1/HL7 QRDA Category III STU 1.1.sch
|
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|
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- lib/schematron/qrda/cat_1_r3_1/QRDA Category I STU Release 3.1.sch
|
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|
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- lib/schematron/qrda/cat_1_r3_1/voc.xml
|
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|
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- lib/schematron/qrda/cat_1_r4/HL7 QRDA Category I STU 4.sch
|
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|
-
- lib/schematron/qrda/cat_1_r4/voc.xml
|
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205
|
- lib/schematron/qrda/cat_1_r5/HL7 QRDA Category I STU 5.sch
|
141
206
|
- lib/schematron/qrda/cat_1_r5/voc.xml
|
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|
-
- lib/schematron/qrda/
|
143
|
-
- lib/schematron/qrda/
|
144
|
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- lib/schematron/qrda/
|
145
|
-
- lib/schematron/qrda/
|
146
|
-
- lib/schematron/qrda/cat_3_r2/HL7 QRDA Category III STU 2.sch
|
147
|
-
- lib/schematron/qrda/cat_3_r2/voc.xml
|
207
|
+
- lib/schematron/qrda/cat_1_r5_1/HL7 QRDA Category I STU 5.1.sch
|
208
|
+
- lib/schematron/qrda/cat_1_r5_1/voc.xml
|
209
|
+
- lib/schematron/qrda/cat_1_r5_2/HL7 QRDA Category I STU 5.2.sch
|
210
|
+
- lib/schematron/qrda/cat_1_r5_2/voc.xml
|
148
211
|
- lib/schematron/qrda/cat_3_r2_1/HL7 QRDA Category III STU 2.1.sch
|
149
212
|
- lib/schematron/qrda/cat_3_r2_1/voc.xml
|
150
213
|
- lib/schematron_validator.rb
|
151
214
|
- lib/validation_error.rb
|
152
215
|
- lib/validators.rb
|
216
|
+
- notice.md
|
153
217
|
homepage: https://github.com/projecttacoma/cqm-validators
|
154
218
|
licenses:
|
155
219
|
- Apache-2.0
|
156
220
|
metadata: {}
|
157
|
-
post_install_message:
|
221
|
+
post_install_message:
|
158
222
|
rdoc_options: []
|
159
223
|
require_paths:
|
160
224
|
- lib
|
@@ -162,16 +226,15 @@ required_ruby_version: !ruby/object:Gem::Requirement
|
|
162
226
|
requirements:
|
163
227
|
- - ">="
|
164
228
|
- !ruby/object:Gem::Version
|
165
|
-
version:
|
229
|
+
version: 2.5.0
|
166
230
|
required_rubygems_version: !ruby/object:Gem::Requirement
|
167
231
|
requirements:
|
168
232
|
- - ">="
|
169
233
|
- !ruby/object:Gem::Version
|
170
234
|
version: '0'
|
171
235
|
requirements: []
|
172
|
-
|
173
|
-
|
174
|
-
signing_key:
|
236
|
+
rubygems_version: 3.1.4
|
237
|
+
signing_key:
|
175
238
|
specification_version: 4
|
176
239
|
summary: new cqm validator library
|
177
240
|
test_files: []
|