cqm-validators 0.1.0 → 3.0.0
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- checksums.yaml +4 -4
- data/.github/PULL_REQUEST_TEMPLATE.md +23 -0
- data/.gitignore +3 -1
- data/.overcommit.yml +18 -0
- data/.rubocop.yml +72 -0
- data/.simplecov +10 -0
- data/.travis.yml +22 -0
- data/Gemfile +11 -3
- data/README.md +22 -6
- data/Rakefile +8 -6
- data/config/mongoid.yml +6 -0
- data/cqm_validators.gemspec +21 -14
- data/lib/base_validator.rb +20 -20
- data/lib/cqm_validators.rb +4 -2
- data/lib/cqm_validators/version.rb +3 -1
- data/lib/data_validator.rb +74 -79
- data/lib/measure_validator.rb +104 -107
- data/lib/performance_rate_validator.rb +43 -63
- data/lib/qrda_qdm_template_validator.rb +164 -311
- data/lib/reported_result_extractor.rb +137 -139
- data/lib/schema_validator.rb +20 -19
- data/lib/schematron/c_processor.rb +19 -19
- data/lib/schematron/java_processor.rb +66 -68
- data/lib/schematron/qrda/{cat_1_r4/HL7 QRDA Category I STU 4.sch → cat_1_r5_1/HL7 QRDA Category I STU 5.1.sch } +1559 -1964
- data/lib/schematron/qrda/{cat_1_r4 → cat_1_r5_1}/voc.xml +7 -2
- data/lib/schematron/qrda/cat_1_r5_2/HL7 QRDA Category I STU 5.2.sch +3961 -0
- data/lib/schematron/qrda/{cat_3_r2 → cat_1_r5_2}/voc.xml +7 -2
- data/lib/schematron_validator.rb +31 -32
- data/lib/validation_error.rb +11 -9
- data/lib/validators.rb +48 -105
- data/notice.md +9 -0
- metadata +90 -26
- data/lib/schematron/qrda/cat_1/HL7_CDAR2_QRDA_Category_I_2_12_16.sch +0 -4693
- data/lib/schematron/qrda/cat_1/voc.xml +0 -1177
- data/lib/schematron/qrda/cat_1_r2/QRDA Category I Release 2.sch +0 -4069
- data/lib/schematron/qrda/cat_1_r2/voc.xml +0 -1065
- data/lib/schematron/qrda/cat_1_r3_1/HL7 QRDA Category I STU 3.1.sch +0 -3573
- data/lib/schematron/qrda/cat_1_r3_1/HL7 QRDA Category III STU 1.1.sch +0 -464
- data/lib/schematron/qrda/cat_1_r3_1/QRDA Category I STU Release 3.1.sch +0 -5394
- data/lib/schematron/qrda/cat_1_r3_1/voc.xml +0 -1229
- data/lib/schematron/qrda/cat_3/QRDA Category III.sch +0 -675
- data/lib/schematron/qrda/cat_3/voc.xml +0 -21
- data/lib/schematron/qrda/cat_3_r1_1/HL7 QRDA Category III STU 1.1.sch +0 -528
- data/lib/schematron/qrda/cat_3_r1_1/voc.xml +0 -8
- data/lib/schematron/qrda/cat_3_r2/HL7 QRDA Category III STU 2.sch +0 -677
@@ -1162,8 +1162,8 @@
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<code value="cancelled" displayName="Cancelled" codeSystemName="ActStatus" codeSystem="2.16.840.1.113883.5.14" />
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</system>
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<system valueSetOid="2.16.840.1.113883.3.249.14.103" valueSetName="QRDA-I CMS Program Name ">
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-
<code value="
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-
<code value="
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+
<code value="MIPS_INDIVIDUAL" displayName="MIPS Individual" codeSystemName="CMS Program" codeSystem="2.16.840.1.113883.3.249.7" />
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+
<code value="MIPS_GROUP" displayName="MIPS Group" codeSystemName="CMS Program" codeSystem="2.16.840.1.113883.3.249.7" />
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<code value="CEC" displayName="Comprehensive End-Stage Renal Disease CARE Initiative" codeSystemName="CMS Program" codeSystem="2.16.840.1.113883.3.249.7" />
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<code value="HQR_EHR" displayName="Hospital Quality Reporting for the EHR Incentive Program" codeSystemName="CMS Program" codeSystem="2.16.840.1.113883.3.249.7" />
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<code value="HQR_IQR" displayName="Hospital Quality Reporting for the Inpatient Quality Reporting Program" codeSystemName="CMS Program" codeSystem="2.16.840.1.113883.3.249.7" />
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@@ -1183,4 +1183,9 @@
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<code value="SPRF" displayName="secondary performer" codeSystemName="HL7ParticipationType" codeSystem="2.16.840.1.113883.5.90" />
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<code value="PPRF" displayName="primary performer" codeSystemName="HL7ParticipationType" codeSystem="2.16.840.1.113883.5.90" />
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</system>
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<system valueSetOid="2.16.840.1.113883.1.11.20549" valueSetName="Criticality Observation">
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<code value="CRITL" displayName="Low Criticality" codeSystemName="Observation Value" codeSystem="2.16.840.1.113883.5.1063" />
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+
<code value="CRITH" displayName="High Criticality" codeSystemName="Observation Value" codeSystem="2.16.840.1.113883.5.1063" />
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+
<code value="CRITU" displayName="Unable to assess criticality" codeSystemName="Observation Value" codeSystem="2.16.840.1.113883.5.1063" />
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</system>
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</systems>
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data/lib/schematron_validator.rb
CHANGED
@@ -1,38 +1,37 @@
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-
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module Schematron
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NAMESPACE = {"svrl" => "http://purl.oclc.org/dsdl/svrl"}
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DIR = File.expand_path("../../", __FILE__)
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ISO_SCHEMATRON = File.join(DIR, 'lib/schematron/iso-schematron-xslt1/iso_svrl_for_xslt1.xsl')
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# frozen_string_literal: true
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-
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-
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module CqmValidators
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module Schematron
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NAMESPACE = { 'svrl' => 'http://purl.oclc.org/dsdl/svrl' }.freeze
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DIR = File.expand_path('..', __dir__)
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ISO_SCHEMATRON = File.join(DIR, 'lib/schematron/iso-schematron-xslt1/iso_svrl_for_xslt1.xsl')
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-
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-
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include Schematron::CProcessor
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else
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require_relative 'schematron/java_processor'
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include Schematron::JavaProcessor
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end
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class Validator
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include BaseValidator
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-
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-
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-
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-
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if RUBY_PLATFORM != 'java'
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require_relative 'schematron/c_processor'
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include Schematron::CProcessor
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else
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require_relative 'schematron/java_processor'
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include Schematron::JavaProcessor
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end
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-
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build_error(error, '/', data[:file_name])
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end
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end
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errors = get_errors(document).root.xpath("//svrl:failed-assert",NAMESPACE).map do |el|
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build_error(el.xpath('svrl:text',NAMESPACE).text, el['location'], data[:file_name])
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end
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errors.uniq{|e| "#{e.location}#{e.message}"}
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-
end
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def initialize(name, schematron_file)
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@name = name
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@schematron_file = schematron_file
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end
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-
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-
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def validate(document, data = {})
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file_errors = get_document(document).errors.select { |e| e.fatal? || e.error? }
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file_errors&.each do |error|
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build_error(error, '/', data[:file_name])
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end
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errors = get_errors(document).root.xpath('//svrl:failed-assert', NAMESPACE).map do |el|
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build_error(el.xpath('svrl:text', NAMESPACE).text, el['location'], data[:file_name])
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end
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errors.uniq { |e| "#{e.location}#{e.message}" }
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end
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end
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end
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end
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data/lib/validation_error.rb
CHANGED
@@ -1,10 +1,12 @@
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# frozen_string_literal: true
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class ValidationError
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end
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attr_accessor :message, :location, :file_name, :validator
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def initialize(params = {})
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@location = params[:location]
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@message = params[:message]
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@validator = params[:validator]
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@file_name = params[:file_name]
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end
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end
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data/lib/validators.rb
CHANGED
@@ -1,3 +1,5 @@
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# frozen_string_literal: true
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require_relative 'validation_error'
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require_relative 'base_validator'
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require_relative 'schema_validator'
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@@ -8,129 +10,70 @@ require_relative 'performance_rate_validator'
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require_relative 'qrda_qdm_template_validator'
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module CqmValidators
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-
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-
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class Cat1Measure < MeasureValidator
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include Singleton
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-
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def initialize()
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super("2.16.840.1.113883.10.20.24.3.97")
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end
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-
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end
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class Cat3Measure < MeasureValidator
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include Singleton
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-
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def initialize()
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super("2.16.840.1.113883.10.20.27.3.1")
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end
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-
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end
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-
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class CDA < Schema::Validator
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include Singleton
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-
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def initialize
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super("CDA SDTC Validator", File.join(BASE_DIR, CDA_SDTC_SCHEMA))
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end
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-
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end
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class Cat1 < Schematron::Validator
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include Singleton
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-
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def initialize
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super("QRDA Cat 1 R3 Validator", File.join(BASE_DIR, QRDA_CAT1_R3_SCHEMATRON))
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end
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-
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end
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class Cat1R2 < Schematron::Validator
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include Singleton
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-
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def initialize
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super("QRDA Cat 1 Validator", File.join(BASE_DIR, QRDA_CAT1_SCHEMATRON))
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end
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-
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-
end
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-
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class Cat1R31 < Schematron::Validator
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include Singleton
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-
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def initialize
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super("QRDA Cat 1 Validator", File.join(BASE_DIR, QRDA_CAT1_R3_1_SCHEMATRON))
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end
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-
|
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+
CDA_SDTC_SCHEMA = 'lib/schema/infrastructure/cda/CDA_SDTC.xsd'
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QRDA_CAT1_R5_SCHEMATRON = 'lib/schematron/qrda/cat_1_r5/HL7 QRDA Category I STU 5.sch'
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QRDA_CAT1_R51_SCHEMATRON = 'lib/schematron/qrda/cat_1_r5_1/HL7 QRDA Category I STU 5.1.sch'
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QRDA_CAT1_R52_SCHEMATRON = 'lib/schematron/qrda/cat_1_r5_2/HL7 QRDA Category I STU 5.2.sch'
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QRDA_CAT3_21SCHEMATRON = 'lib/schematron/qrda/cat_3_r2_1/HL7 QRDA Category III STU 2.1.sch'
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BASE_DIR = File.expand_path('..', __dir__)
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class Cat1Measure < MeasureValidator
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include Singleton
|
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+
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def initialize
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super('2.16.840.1.113883.10.20.24.3.97')
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end
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end
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27
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-
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-
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-
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def initialize
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super("QRDA Cat 1 Validator", File.join(BASE_DIR, QRDA_CAT1_R4_SCHEMATRON))
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-
end
|
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+
class Cat3Measure < MeasureValidator
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+
include Singleton
|
84
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31
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def initialize
|
32
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super('2.16.840.1.113883.10.20.27.3.1')
|
85
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end
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+
end
|
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35
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|
87
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-
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-
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-
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def initialize
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super("QRDA Cat 1 Validator", File.join(BASE_DIR, QRDA_CAT1_R5_SCHEMATRON))
|
92
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-
end
|
36
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+
class CDA < Schema::Validator
|
37
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+
include Singleton
|
93
38
|
|
39
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+
def initialize
|
40
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+
super('CDA SDTC Validator', File.join(BASE_DIR, CDA_SDTC_SCHEMA))
|
94
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end
|
42
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+
end
|
95
43
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|
96
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-
|
97
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-
|
44
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+
class Cat1R5 < Schematron::Validator
|
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+
include Singleton
|
98
46
|
|
99
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-
|
100
|
-
|
101
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-
end
|
47
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+
def initialize
|
48
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+
super('QRDA Cat 1 Validator', File.join(BASE_DIR, QRDA_CAT1_R5_SCHEMATRON))
|
102
49
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end
|
50
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+
end
|
103
51
|
|
104
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-
|
105
|
-
|
52
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+
class Cat1R51 < Schematron::Validator
|
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+
include Singleton
|
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|
107
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-
|
108
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-
|
109
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-
end
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+
def initialize
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+
super('QRDA Cat 1 Validator', File.join(BASE_DIR, QRDA_CAT1_R51_SCHEMATRON))
|
110
57
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end
|
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+
end
|
111
59
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|
112
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-
|
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-
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+
class Cat1R52 < Schematron::Validator
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include Singleton
|
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|
115
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-
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-
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-
end
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def initialize
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super('QRDA Cat 1 Validator', File.join(BASE_DIR, QRDA_CAT1_R52_SCHEMATRON))
|
118
65
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end
|
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+
end
|
119
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|
120
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-
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121
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-
|
68
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+
class Cat3R21 < Schematron::Validator
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include Singleton
|
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|
123
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-
|
124
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-
|
125
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-
end
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def initialize
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super('QRDA Cat 3 Validator', File.join(BASE_DIR, QRDA_CAT3_21SCHEMATRON))
|
126
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end
|
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end
|
127
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128
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-
|
129
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-
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130
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-
|
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#def initialize
|
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# super("Performance Rate Validator", File.join(BASE_DIR, CDA_SDTC_SCHEMA))
|
133
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#end
|
134
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-
|
135
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-
end
|
76
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+
class Cat3PerformanceRate < PerformanceRateValidator
|
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include Singleton
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+
end
|
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end
|
data/notice.md
ADDED
@@ -0,0 +1,9 @@
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NOTICE
|
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+
======
|
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This (software/technical data) was produced for the U. S. Government under Contract Number HHSM-500-2012-00008I, and is subject to Federal Acquisition Regulation Clause 52.227-14, Rights in Data-General.
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4
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+
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No other use other than that granted to the U. S. Government, or to those acting on behalf of the U. S. Government under that Clause is authorized without the express written permission of The MITRE Corporation.
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6
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+
|
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+
To the extent necessary MITRE hereby grants express written permission to use, reproduce, distribute, modify, and otherwise leverage this software to the extent permitted by the Apache 2.0 license.
|
8
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+
|
9
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For further information, please contact The MITRE Corporation, Contracts Management Office, 7515 Colshire Drive, McLean, VA 22102-7539, (703) 983-6000.
|
metadata
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
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--- !ruby/object:Gem::Specification
|
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name: cqm-validators
|
3
3
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version: !ruby/object:Gem::Version
|
4
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-
version: 0.
|
4
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+
version: 3.0.0
|
5
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platform: ruby
|
6
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authors:
|
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7
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- Laura
|
@@ -9,7 +9,7 @@ authors:
|
|
9
9
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autorequire:
|
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bindir: exe
|
11
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cert_chain: []
|
12
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-
date:
|
12
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+
date: 2020-06-30 00:00:00.000000000 Z
|
13
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dependencies:
|
14
14
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- !ruby/object:Gem::Dependency
|
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15
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name: nokogiri
|
@@ -17,28 +17,98 @@ dependencies:
|
|
17
17
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requirements:
|
18
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- - "~>"
|
19
19
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- !ruby/object:Gem::Version
|
20
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-
version: 1.
|
20
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+
version: '1.10'
|
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type: :runtime
|
22
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: 1.
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version: '1.10'
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- !ruby/object:Gem::Dependency
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name: bundler
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requirement: !ruby/object:Gem::Requirement
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requirements:
|
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- - ">="
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- !ruby/object:Gem::Version
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version: '0'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
|
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requirements:
|
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- - ">="
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- !ruby/object:Gem::Version
|
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version: '0'
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- !ruby/object:Gem::Dependency
|
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name: byebug
|
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requirement: !ruby/object:Gem::Requirement
|
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requirements:
|
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+
- - ">="
|
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- !ruby/object:Gem::Version
|
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version: '0'
|
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+
type: :development
|
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+
prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
|
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requirements:
|
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+
- - ">="
|
54
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+
- !ruby/object:Gem::Version
|
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version: '0'
|
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|
+
- !ruby/object:Gem::Dependency
|
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+
name: minitest
|
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requirement: !ruby/object:Gem::Requirement
|
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requirements:
|
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|
- - "~>"
|
33
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- !ruby/object:Gem::Version
|
34
|
-
version: '
|
62
|
+
version: '5.0'
|
35
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type: :development
|
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|
prerelease: false
|
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version_requirements: !ruby/object:Gem::Requirement
|
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requirements:
|
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|
- - "~>"
|
40
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- !ruby/object:Gem::Version
|
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-
version: '
|
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|
+
version: '5.0'
|
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+
- !ruby/object:Gem::Dependency
|
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|
+
name: minitest-reporters
|
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|
+
requirement: !ruby/object:Gem::Requirement
|
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|
+
requirements:
|
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|
+
- - ">="
|
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- !ruby/object:Gem::Version
|
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+
version: '0'
|
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|
+
type: :development
|
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|
+
prerelease: false
|
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|
+
version_requirements: !ruby/object:Gem::Requirement
|
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|
+
requirements:
|
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|
+
- - ">="
|
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|
+
- !ruby/object:Gem::Version
|
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|
+
version: '0'
|
84
|
+
- !ruby/object:Gem::Dependency
|
85
|
+
name: mongoid
|
86
|
+
requirement: !ruby/object:Gem::Requirement
|
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|
+
requirements:
|
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|
+
- - ">="
|
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|
+
- !ruby/object:Gem::Version
|
90
|
+
version: '0'
|
91
|
+
type: :development
|
92
|
+
prerelease: false
|
93
|
+
version_requirements: !ruby/object:Gem::Requirement
|
94
|
+
requirements:
|
95
|
+
- - ">="
|
96
|
+
- !ruby/object:Gem::Version
|
97
|
+
version: '0'
|
98
|
+
- !ruby/object:Gem::Dependency
|
99
|
+
name: overcommit
|
100
|
+
requirement: !ruby/object:Gem::Requirement
|
101
|
+
requirements:
|
102
|
+
- - ">="
|
103
|
+
- !ruby/object:Gem::Version
|
104
|
+
version: '0'
|
105
|
+
type: :development
|
106
|
+
prerelease: false
|
107
|
+
version_requirements: !ruby/object:Gem::Requirement
|
108
|
+
requirements:
|
109
|
+
- - ">="
|
110
|
+
- !ruby/object:Gem::Version
|
111
|
+
version: '0'
|
42
112
|
- !ruby/object:Gem::Dependency
|
43
113
|
name: rake
|
44
114
|
requirement: !ruby/object:Gem::Requirement
|
@@ -54,19 +124,19 @@ dependencies:
|
|
54
124
|
- !ruby/object:Gem::Version
|
55
125
|
version: '10.0'
|
56
126
|
- !ruby/object:Gem::Dependency
|
57
|
-
name:
|
127
|
+
name: rubocop
|
58
128
|
requirement: !ruby/object:Gem::Requirement
|
59
129
|
requirements:
|
60
130
|
- - "~>"
|
61
131
|
- !ruby/object:Gem::Version
|
62
|
-
version: '
|
132
|
+
version: '0.60'
|
63
133
|
type: :development
|
64
134
|
prerelease: false
|
65
135
|
version_requirements: !ruby/object:Gem::Requirement
|
66
136
|
requirements:
|
67
137
|
- - "~>"
|
68
138
|
- !ruby/object:Gem::Version
|
69
|
-
version: '
|
139
|
+
version: '0.60'
|
70
140
|
description: new cqm validator library
|
71
141
|
email:
|
72
142
|
- laclark@mitre.org
|
@@ -75,8 +145,12 @@ executables: []
|
|
75
145
|
extensions: []
|
76
146
|
extra_rdoc_files: []
|
77
147
|
files:
|
78
|
-
- ".
|
148
|
+
- ".github/PULL_REQUEST_TEMPLATE.md"
|
79
149
|
- ".gitignore"
|
150
|
+
- ".overcommit.yml"
|
151
|
+
- ".rubocop.yml"
|
152
|
+
- ".simplecov"
|
153
|
+
- ".travis.yml"
|
80
154
|
- Gemfile
|
81
155
|
- LICENSE.txt
|
82
156
|
- QRDA_Schematron_License.txt
|
@@ -84,6 +158,7 @@ files:
|
|
84
158
|
- Rakefile
|
85
159
|
- bin/console
|
86
160
|
- bin/setup
|
161
|
+
- config/mongoid.yml
|
87
162
|
- cqm_validators.gemspec
|
88
163
|
- lib/base_validator.rb
|
89
164
|
- lib/cqm_validators.rb
|
@@ -127,29 +202,18 @@ files:
|
|
127
202
|
- lib/schematron/iso-schematron-xslt2/sch-messages-nl.xhtml
|
128
203
|
- lib/schematron/iso-schematron-xslt2/schematron-skeleton-api.htm
|
129
204
|
- lib/schematron/java_processor.rb
|
130
|
-
- lib/schematron/qrda/cat_1/HL7_CDAR2_QRDA_Category_I_2_12_16.sch
|
131
|
-
- lib/schematron/qrda/cat_1/voc.xml
|
132
|
-
- lib/schematron/qrda/cat_1_r2/QRDA Category I Release 2.sch
|
133
|
-
- lib/schematron/qrda/cat_1_r2/voc.xml
|
134
|
-
- lib/schematron/qrda/cat_1_r3_1/HL7 QRDA Category I STU 3.1.sch
|
135
|
-
- lib/schematron/qrda/cat_1_r3_1/HL7 QRDA Category III STU 1.1.sch
|
136
|
-
- lib/schematron/qrda/cat_1_r3_1/QRDA Category I STU Release 3.1.sch
|
137
|
-
- lib/schematron/qrda/cat_1_r3_1/voc.xml
|
138
|
-
- lib/schematron/qrda/cat_1_r4/HL7 QRDA Category I STU 4.sch
|
139
|
-
- lib/schematron/qrda/cat_1_r4/voc.xml
|
140
205
|
- lib/schematron/qrda/cat_1_r5/HL7 QRDA Category I STU 5.sch
|
141
206
|
- lib/schematron/qrda/cat_1_r5/voc.xml
|
142
|
-
- lib/schematron/qrda/
|
143
|
-
- lib/schematron/qrda/
|
144
|
-
- lib/schematron/qrda/
|
145
|
-
- lib/schematron/qrda/
|
146
|
-
- lib/schematron/qrda/cat_3_r2/HL7 QRDA Category III STU 2.sch
|
147
|
-
- lib/schematron/qrda/cat_3_r2/voc.xml
|
207
|
+
- lib/schematron/qrda/cat_1_r5_1/HL7 QRDA Category I STU 5.1.sch
|
208
|
+
- lib/schematron/qrda/cat_1_r5_1/voc.xml
|
209
|
+
- lib/schematron/qrda/cat_1_r5_2/HL7 QRDA Category I STU 5.2.sch
|
210
|
+
- lib/schematron/qrda/cat_1_r5_2/voc.xml
|
148
211
|
- lib/schematron/qrda/cat_3_r2_1/HL7 QRDA Category III STU 2.1.sch
|
149
212
|
- lib/schematron/qrda/cat_3_r2_1/voc.xml
|
150
213
|
- lib/schematron_validator.rb
|
151
214
|
- lib/validation_error.rb
|
152
215
|
- lib/validators.rb
|
216
|
+
- notice.md
|
153
217
|
homepage: https://github.com/projecttacoma/cqm-validators
|
154
218
|
licenses:
|
155
219
|
- Apache-2.0
|