cqm-validators 0.1.0 → 2.0.2
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- checksums.yaml +5 -5
- data/.github/PULL_REQUEST_TEMPLATE.md +23 -0
- data/.gitignore +3 -1
- data/.overcommit.yml +18 -0
- data/.rubocop.yml +68 -0
- data/.simplecov +12 -0
- data/.travis.yml +20 -0
- data/Gemfile +11 -3
- data/README.md +20 -6
- data/Rakefile +8 -6
- data/config/mongoid.yml +6 -0
- data/cqm_validators.gemspec +23 -14
- data/lib/base_validator.rb +20 -20
- data/lib/cqm_validators.rb +4 -2
- data/lib/cqm_validators/version.rb +3 -1
- data/lib/data_validator.rb +74 -79
- data/lib/measure_validator.rb +104 -107
- data/lib/performance_rate_validator.rb +43 -63
- data/lib/qrda_qdm_template_validator.rb +164 -311
- data/lib/reported_result_extractor.rb +137 -139
- data/lib/schema_validator.rb +20 -19
- data/lib/schematron/c_processor.rb +19 -19
- data/lib/schematron/java_processor.rb +66 -68
- data/lib/schematron/qrda/{cat_1_r4/HL7 QRDA Category I STU 4.sch → cat_1_r5_1/HL7 QRDA Category I STU 5.1.sch } +1684 -2082
- data/lib/schematron/qrda/{cat_1_r3_1 → cat_1_r5_1}/voc.xml +1223 -1228
- data/lib/schematron_validator.rb +31 -32
- data/lib/validation_error.rb +11 -9
- data/lib/validators.rb +40 -106
- data/notice.md +9 -0
- metadata +97 -36
- data/lib/schematron/qrda/cat_1/HL7_CDAR2_QRDA_Category_I_2_12_16.sch +0 -4693
- data/lib/schematron/qrda/cat_1/voc.xml +0 -1177
- data/lib/schematron/qrda/cat_1_r2/QRDA Category I Release 2.sch +0 -4069
- data/lib/schematron/qrda/cat_1_r2/voc.xml +0 -1065
- data/lib/schematron/qrda/cat_1_r3_1/HL7 QRDA Category I STU 3.1.sch +0 -3573
- data/lib/schematron/qrda/cat_1_r3_1/HL7 QRDA Category III STU 1.1.sch +0 -464
- data/lib/schematron/qrda/cat_1_r3_1/QRDA Category I STU Release 3.1.sch +0 -5394
- data/lib/schematron/qrda/cat_1_r4/voc.xml +0 -1186
- data/lib/schematron/qrda/cat_3/QRDA Category III.sch +0 -675
- data/lib/schematron/qrda/cat_3/voc.xml +0 -21
- data/lib/schematron/qrda/cat_3_r1_1/HL7 QRDA Category III STU 1.1.sch +0 -528
- data/lib/schematron/qrda/cat_3_r1_1/voc.xml +0 -8
- data/lib/schematron/qrda/cat_3_r2/HL7 QRDA Category III STU 2.sch +0 -677
- data/lib/schematron/qrda/cat_3_r2/voc.xml +0 -1186
data/lib/schematron_validator.rb
CHANGED
@@ -1,38 +1,37 @@
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1
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-
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2
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-
module Schematron
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3
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-
NAMESPACE = {"svrl" => "http://purl.oclc.org/dsdl/svrl"}
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4
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-
DIR = File.expand_path("../../", __FILE__)
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5
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-
ISO_SCHEMATRON = File.join(DIR, 'lib/schematron/iso-schematron-xslt1/iso_svrl_for_xslt1.xsl')
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1
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+
# frozen_string_literal: true
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2
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-
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-
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3
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+
module CqmValidators
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+
module Schematron
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5
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+
NAMESPACE = { 'svrl' => 'http://purl.oclc.org/dsdl/svrl' }.freeze
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6
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+
DIR = File.expand_path('..', __dir__)
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7
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+
ISO_SCHEMATRON = File.join(DIR, 'lib/schematron/iso-schematron-xslt1/iso_svrl_for_xslt1.xsl')
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9
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10
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-
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-
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include Schematron::CProcessor
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else
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require_relative 'schematron/java_processor'
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include Schematron::JavaProcessor
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16
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-
end
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9
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+
class Validator
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include BaseValidator
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11
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-
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-
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-
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-
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+
if RUBY_PLATFORM != 'java'
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require_relative 'schematron/c_processor'
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include Schematron::CProcessor
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+
else
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require_relative 'schematron/java_processor'
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include Schematron::JavaProcessor
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end
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-
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-
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build_error(error, '/', data[:file_name])
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end
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end
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errors = get_errors(document).root.xpath("//svrl:failed-assert",NAMESPACE).map do |el|
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-
build_error(el.xpath('svrl:text',NAMESPACE).text, el['location'], data[:file_name])
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end
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errors.uniq{|e| "#{e.location}#{e.message}"}
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-
end
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+
def initialize(name, schematron_file)
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@name = name
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@schematron_file = schematron_file
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end
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24
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-
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-
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+
def validate(document, data = {})
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file_errors = get_document(document).errors.select { |e| e.fatal? || e.error? }
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file_errors&.each do |error|
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build_error(error, '/', data[:file_name])
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+
end
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+
errors = get_errors(document).root.xpath('//svrl:failed-assert', NAMESPACE).map do |el|
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+
build_error(el.xpath('svrl:text', NAMESPACE).text, el['location'], data[:file_name])
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+
end
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+
errors.uniq { |e| "#{e.location}#{e.message}" }
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+
end
|
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+
end
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+
end
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end
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data/lib/validation_error.rb
CHANGED
@@ -1,10 +1,12 @@
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1
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+
# frozen_string_literal: true
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class ValidationError
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9
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-
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10
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-
end
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4
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+
attr_accessor :message, :location, :file_name, :validator
|
5
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+
|
6
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+
def initialize(params = {})
|
7
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+
@location = params[:location]
|
8
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+
@message = params[:message]
|
9
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+
@validator = params[:validator]
|
10
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+
@file_name = params[:file_name]
|
11
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+
end
|
12
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+
end
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data/lib/validators.rb
CHANGED
@@ -1,3 +1,5 @@
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1
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+
# frozen_string_literal: true
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2
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+
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1
3
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require_relative 'validation_error'
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2
4
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require_relative 'base_validator'
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3
5
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require_relative 'schema_validator'
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@@ -8,129 +10,61 @@ require_relative 'performance_rate_validator'
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8
10
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require_relative 'qrda_qdm_template_validator'
|
9
11
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|
10
12
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module CqmValidators
|
13
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+
CDA_SDTC_SCHEMA = 'lib/schema/infrastructure/cda/CDA_SDTC.xsd'
|
14
|
+
QRDA_CAT1_R5_SCHEMATRON = 'lib/schematron/qrda/cat_1_r5/HL7 QRDA Category I STU 5.sch'
|
15
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+
QRDA_CAT1_R51_SCHEMATRON = 'lib/schematron/qrda/cat_1_r5_1/HL7 QRDA Category I STU 5.1.sch'
|
16
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+
QRDA_CAT3_21SCHEMATRON = 'lib/schematron/qrda/cat_3_r2_1/HL7 QRDA Category III STU 2.1.sch'
|
17
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+
BASE_DIR = File.expand_path('..', __dir__)
|
11
18
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|
12
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-
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13
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-
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14
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-
QRDA_CAT1_R3_SCHEMATRON = 'lib/schematron/qrda/cat_1/HL7_CDAR2_QRDA_Category_I_2_12_16.sch'
|
15
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-
QRDA_CAT1_R3_1_SCHEMATRON = 'lib/schematron/qrda/cat_1_r3_1/HL7 QRDA Category I STU 3.1.sch'
|
16
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-
QRDA_CAT1_R4_SCHEMATRON = 'lib/schematron/qrda/cat_1_r4/HL7 QRDA Category I STU 4.sch'
|
17
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-
QRDA_CAT1_R5_SCHEMATRON = 'lib/schematron/qrda/cat_1_r5/HL7 QRDA Category I STU 5.sch'
|
18
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-
QRDA_CAT3_SCHEMATRON = 'lib/schematron/qrda/cat_3/QRDA Category III.sch'
|
19
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-
QRDA_CAT3_1_1SCHEMATRON = 'lib/schematron/qrda/cat_3_r1_1/HL7 QRDA Category III STU 1.1.sch'
|
20
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-
QRDA_CAT3_2SCHEMATRON = 'lib/schematron/qrda/cat_3_r2/HL7 QRDA Category III STU 2.sch'
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21
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-
QRDA_CAT3_21SCHEMATRON = 'lib/schematron/qrda/cat_3_r2_1/HL7 QRDA Category III STU 2.1.sch'
|
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-
BASE_DIR = File.expand_path("../../", __FILE__)
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23
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-
|
24
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-
class Cat1Measure < MeasureValidator
|
25
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-
include Singleton
|
26
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-
|
27
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-
def initialize()
|
28
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super("2.16.840.1.113883.10.20.24.3.97")
|
29
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-
end
|
30
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-
|
31
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-
end
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32
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-
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33
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class Cat3Measure < MeasureValidator
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34
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-
include Singleton
|
35
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-
|
36
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def initialize()
|
37
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super("2.16.840.1.113883.10.20.27.3.1")
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38
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-
end
|
39
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-
|
40
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-
end
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41
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-
|
42
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-
class CDA < Schema::Validator
|
43
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include Singleton
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44
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-
|
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def initialize
|
46
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-
super("CDA SDTC Validator", File.join(BASE_DIR, CDA_SDTC_SCHEMA))
|
47
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-
end
|
19
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+
class Cat1Measure < MeasureValidator
|
20
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+
include Singleton
|
48
21
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22
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+
def initialize
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23
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+
super('2.16.840.1.113883.10.20.24.3.97')
|
49
24
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end
|
25
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+
end
|
50
26
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|
51
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-
|
52
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-
|
53
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-
|
54
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-
def initialize
|
55
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-
super("QRDA Cat 1 R3 Validator", File.join(BASE_DIR, QRDA_CAT1_R3_SCHEMATRON))
|
56
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-
end
|
27
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+
class Cat3Measure < MeasureValidator
|
28
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+
include Singleton
|
57
29
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|
30
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+
def initialize
|
31
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+
super('2.16.840.1.113883.10.20.27.3.1')
|
58
32
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end
|
33
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+
end
|
59
34
|
|
60
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-
|
61
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-
|
62
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-
|
63
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-
def initialize
|
64
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-
super("QRDA Cat 1 Validator", File.join(BASE_DIR, QRDA_CAT1_SCHEMATRON))
|
65
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-
end
|
35
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+
class CDA < Schema::Validator
|
36
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+
include Singleton
|
66
37
|
|
38
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+
def initialize
|
39
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+
super('CDA SDTC Validator', File.join(BASE_DIR, CDA_SDTC_SCHEMA))
|
67
40
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end
|
41
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+
end
|
68
42
|
|
69
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-
|
70
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-
|
71
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-
|
72
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-
def initialize
|
73
|
-
super("QRDA Cat 1 Validator", File.join(BASE_DIR, QRDA_CAT1_R3_1_SCHEMATRON))
|
74
|
-
end
|
43
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+
class Cat1R5 < Schematron::Validator
|
44
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+
include Singleton
|
75
45
|
|
46
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+
def initialize
|
47
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+
super('QRDA Cat 1 Validator', File.join(BASE_DIR, QRDA_CAT1_R5_SCHEMATRON))
|
76
48
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end
|
49
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+
end
|
77
50
|
|
78
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-
|
79
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-
|
80
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-
|
81
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-
def initialize
|
82
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-
super("QRDA Cat 1 Validator", File.join(BASE_DIR, QRDA_CAT1_R4_SCHEMATRON))
|
83
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-
end
|
51
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+
class Cat1R51 < Schematron::Validator
|
52
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+
include Singleton
|
84
53
|
|
54
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+
def initialize
|
55
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+
super('QRDA Cat 1 Validator', File.join(BASE_DIR, QRDA_CAT1_R51_SCHEMATRON))
|
85
56
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end
|
57
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+
end
|
86
58
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|
87
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-
|
88
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-
|
89
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-
|
90
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-
def initialize
|
91
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-
super("QRDA Cat 1 Validator", File.join(BASE_DIR, QRDA_CAT1_R5_SCHEMATRON))
|
92
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-
end
|
59
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+
class Cat3R21 < Schematron::Validator
|
60
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+
include Singleton
|
93
61
|
|
62
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+
def initialize
|
63
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+
super('QRDA Cat 3 Validator', File.join(BASE_DIR, QRDA_CAT3_21SCHEMATRON))
|
94
64
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end
|
65
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+
end
|
95
66
|
|
96
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-
|
97
|
-
|
98
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-
|
99
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-
def initialize
|
100
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super("QRDA Cat 3 Validator", File.join(BASE_DIR, QRDA_CAT3_SCHEMATRON))
|
101
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-
end
|
102
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-
end
|
103
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-
|
104
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-
class Cat3R11 < Schematron::Validator
|
105
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-
include Singleton
|
106
|
-
|
107
|
-
def initialize
|
108
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-
super("QRDA Cat 3 Validator", File.join(BASE_DIR, QRDA_CAT3_1_1SCHEMATRON))
|
109
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-
end
|
110
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-
end
|
111
|
-
|
112
|
-
class Cat3R2 < Schematron::Validator
|
113
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-
include Singleton
|
114
|
-
|
115
|
-
def initialize
|
116
|
-
super("QRDA Cat 3 Validator", File.join(BASE_DIR, QRDA_CAT3_2SCHEMATRON))
|
117
|
-
end
|
118
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-
end
|
119
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-
|
120
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-
class Cat3R21 < Schematron::Validator
|
121
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include Singleton
|
122
|
-
|
123
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-
def initialize
|
124
|
-
super("QRDA Cat 3 Validator", File.join(BASE_DIR, QRDA_CAT3_21SCHEMATRON))
|
125
|
-
end
|
126
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-
end
|
127
|
-
|
128
|
-
class Cat3PerformanceRate < PerformanceRateValidator
|
129
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-
include Singleton
|
130
|
-
|
131
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-
#def initialize
|
132
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-
# super("Performance Rate Validator", File.join(BASE_DIR, CDA_SDTC_SCHEMA))
|
133
|
-
#end
|
134
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-
|
135
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-
end
|
67
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+
class Cat3PerformanceRate < PerformanceRateValidator
|
68
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+
include Singleton
|
69
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+
end
|
136
70
|
end
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data/notice.md
ADDED
@@ -0,0 +1,9 @@
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1
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+
NOTICE
|
2
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+
======
|
3
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+
This (software/technical data) was produced for the U. S. Government under Contract Number HHSM-500-2012-00008I, and is subject to Federal Acquisition Regulation Clause 52.227-14, Rights in Data-General.
|
4
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+
|
5
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+
No other use other than that granted to the U. S. Government, or to those acting on behalf of the U. S. Government under that Clause is authorized without the express written permission of The MITRE Corporation.
|
6
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+
|
7
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+
To the extent necessary MITRE hereby grants express written permission to use, reproduce, distribute, modify, and otherwise leverage this software to the extent permitted by the Apache 2.0 license.
|
8
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+
|
9
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For further information, please contact The MITRE Corporation, Contracts Management Office, 7515 Colshire Drive, McLean, VA 22102-7539, (703) 983-6000.
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metadata
CHANGED
@@ -1,15 +1,15 @@
|
|
1
1
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--- !ruby/object:Gem::Specification
|
2
2
|
name: cqm-validators
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 0.
|
4
|
+
version: 2.0.2
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Laura
|
8
8
|
- Michael O'Keefe
|
9
|
-
autorequire:
|
9
|
+
autorequire:
|
10
10
|
bindir: exe
|
11
11
|
cert_chain: []
|
12
|
-
date:
|
12
|
+
date: 2020-11-25 00:00:00.000000000 Z
|
13
13
|
dependencies:
|
14
14
|
- !ruby/object:Gem::Dependency
|
15
15
|
name: nokogiri
|
@@ -17,42 +17,42 @@ dependencies:
|
|
17
17
|
requirements:
|
18
18
|
- - "~>"
|
19
19
|
- !ruby/object:Gem::Version
|
20
|
-
version: 1.
|
20
|
+
version: '1.10'
|
21
21
|
type: :runtime
|
22
22
|
prerelease: false
|
23
23
|
version_requirements: !ruby/object:Gem::Requirement
|
24
24
|
requirements:
|
25
25
|
- - "~>"
|
26
26
|
- !ruby/object:Gem::Version
|
27
|
-
version: 1.
|
27
|
+
version: '1.10'
|
28
28
|
- !ruby/object:Gem::Dependency
|
29
29
|
name: bundler
|
30
30
|
requirement: !ruby/object:Gem::Requirement
|
31
31
|
requirements:
|
32
|
-
- - "
|
32
|
+
- - ">="
|
33
33
|
- !ruby/object:Gem::Version
|
34
|
-
version: '
|
34
|
+
version: '0'
|
35
35
|
type: :development
|
36
36
|
prerelease: false
|
37
37
|
version_requirements: !ruby/object:Gem::Requirement
|
38
38
|
requirements:
|
39
|
-
- - "
|
39
|
+
- - ">="
|
40
40
|
- !ruby/object:Gem::Version
|
41
|
-
version: '
|
41
|
+
version: '0'
|
42
42
|
- !ruby/object:Gem::Dependency
|
43
|
-
name:
|
43
|
+
name: byebug
|
44
44
|
requirement: !ruby/object:Gem::Requirement
|
45
45
|
requirements:
|
46
|
-
- - "
|
46
|
+
- - ">="
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- !ruby/object:Gem::Version
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version: '
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version: '0'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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-
- - "
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+
- - ">="
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- !ruby/object:Gem::Version
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version: '
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+
version: '0'
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- !ruby/object:Gem::Dependency
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name: minitest
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requirement: !ruby/object:Gem::Requirement
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@@ -67,6 +67,76 @@ dependencies:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '5.0'
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- !ruby/object:Gem::Dependency
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name: minitest-reporters
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requirement: !ruby/object:Gem::Requirement
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requirements:
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+
- - ">="
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+
- !ruby/object:Gem::Version
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version: '0'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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+
requirements:
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+
- - ">="
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+
- !ruby/object:Gem::Version
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version: '0'
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+
- !ruby/object:Gem::Dependency
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name: mongoid
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requirement: !ruby/object:Gem::Requirement
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+
requirements:
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+
- - ">="
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+
- !ruby/object:Gem::Version
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version: '0'
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+
type: :development
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prerelease: false
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+
version_requirements: !ruby/object:Gem::Requirement
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+
requirements:
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+
- - ">="
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+
- !ruby/object:Gem::Version
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version: '0'
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+
- !ruby/object:Gem::Dependency
|
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+
name: overcommit
|
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+
requirement: !ruby/object:Gem::Requirement
|
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+
requirements:
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+
- - ">="
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+
- !ruby/object:Gem::Version
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+
version: '0'
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+
type: :development
|
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+
prerelease: false
|
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+
version_requirements: !ruby/object:Gem::Requirement
|
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+
requirements:
|
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+
- - ">="
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+
- !ruby/object:Gem::Version
|
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+
version: '0'
|
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+
- !ruby/object:Gem::Dependency
|
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|
+
name: rake
|
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|
+
requirement: !ruby/object:Gem::Requirement
|
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|
+
requirements:
|
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|
+
- - ">="
|
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|
+
- !ruby/object:Gem::Version
|
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|
+
version: 12.3.3
|
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|
+
type: :development
|
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+
prerelease: false
|
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+
version_requirements: !ruby/object:Gem::Requirement
|
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+
requirements:
|
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|
+
- - ">="
|
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+
- !ruby/object:Gem::Version
|
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|
+
version: 12.3.3
|
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+
- !ruby/object:Gem::Dependency
|
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|
+
name: rubocop
|
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+
requirement: !ruby/object:Gem::Requirement
|
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+
requirements:
|
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|
+
- - "~>"
|
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|
+
- !ruby/object:Gem::Version
|
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|
+
version: '0.93'
|
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|
+
type: :development
|
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|
+
prerelease: false
|
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|
+
version_requirements: !ruby/object:Gem::Requirement
|
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|
+
requirements:
|
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+
- - "~>"
|
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|
+
- !ruby/object:Gem::Version
|
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|
+
version: '0.93'
|
70
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|
description: new cqm validator library
|
71
141
|
email:
|
72
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|
- laclark@mitre.org
|
@@ -75,8 +145,12 @@ executables: []
|
|
75
145
|
extensions: []
|
76
146
|
extra_rdoc_files: []
|
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|
files:
|
78
|
-
- ".
|
148
|
+
- ".github/PULL_REQUEST_TEMPLATE.md"
|
79
149
|
- ".gitignore"
|
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|
+
- ".overcommit.yml"
|
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|
+
- ".rubocop.yml"
|
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|
+
- ".simplecov"
|
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|
+
- ".travis.yml"
|
80
154
|
- Gemfile
|
81
155
|
- LICENSE.txt
|
82
156
|
- QRDA_Schematron_License.txt
|
@@ -84,6 +158,7 @@ files:
|
|
84
158
|
- Rakefile
|
85
159
|
- bin/console
|
86
160
|
- bin/setup
|
161
|
+
- config/mongoid.yml
|
87
162
|
- cqm_validators.gemspec
|
88
163
|
- lib/base_validator.rb
|
89
164
|
- lib/cqm_validators.rb
|
@@ -127,34 +202,21 @@ files:
|
|
127
202
|
- lib/schematron/iso-schematron-xslt2/sch-messages-nl.xhtml
|
128
203
|
- lib/schematron/iso-schematron-xslt2/schematron-skeleton-api.htm
|
129
204
|
- lib/schematron/java_processor.rb
|
130
|
-
- lib/schematron/qrda/cat_1/HL7_CDAR2_QRDA_Category_I_2_12_16.sch
|
131
|
-
- lib/schematron/qrda/cat_1/voc.xml
|
132
|
-
- lib/schematron/qrda/cat_1_r2/QRDA Category I Release 2.sch
|
133
|
-
- lib/schematron/qrda/cat_1_r2/voc.xml
|
134
|
-
- lib/schematron/qrda/cat_1_r3_1/HL7 QRDA Category I STU 3.1.sch
|
135
|
-
- lib/schematron/qrda/cat_1_r3_1/HL7 QRDA Category III STU 1.1.sch
|
136
|
-
- lib/schematron/qrda/cat_1_r3_1/QRDA Category I STU Release 3.1.sch
|
137
|
-
- lib/schematron/qrda/cat_1_r3_1/voc.xml
|
138
|
-
- lib/schematron/qrda/cat_1_r4/HL7 QRDA Category I STU 4.sch
|
139
|
-
- lib/schematron/qrda/cat_1_r4/voc.xml
|
140
205
|
- lib/schematron/qrda/cat_1_r5/HL7 QRDA Category I STU 5.sch
|
141
206
|
- lib/schematron/qrda/cat_1_r5/voc.xml
|
142
|
-
- lib/schematron/qrda/
|
143
|
-
- lib/schematron/qrda/
|
144
|
-
- lib/schematron/qrda/cat_3_r1_1/HL7 QRDA Category III STU 1.1.sch
|
145
|
-
- lib/schematron/qrda/cat_3_r1_1/voc.xml
|
146
|
-
- lib/schematron/qrda/cat_3_r2/HL7 QRDA Category III STU 2.sch
|
147
|
-
- lib/schematron/qrda/cat_3_r2/voc.xml
|
207
|
+
- lib/schematron/qrda/cat_1_r5_1/HL7 QRDA Category I STU 5.1.sch
|
208
|
+
- lib/schematron/qrda/cat_1_r5_1/voc.xml
|
148
209
|
- lib/schematron/qrda/cat_3_r2_1/HL7 QRDA Category III STU 2.1.sch
|
149
210
|
- lib/schematron/qrda/cat_3_r2_1/voc.xml
|
150
211
|
- lib/schematron_validator.rb
|
151
212
|
- lib/validation_error.rb
|
152
213
|
- lib/validators.rb
|
214
|
+
- notice.md
|
153
215
|
homepage: https://github.com/projecttacoma/cqm-validators
|
154
216
|
licenses:
|
155
217
|
- Apache-2.0
|
156
218
|
metadata: {}
|
157
|
-
post_install_message:
|
219
|
+
post_install_message:
|
158
220
|
rdoc_options: []
|
159
221
|
require_paths:
|
160
222
|
- lib
|
@@ -162,16 +224,15 @@ required_ruby_version: !ruby/object:Gem::Requirement
|
|
162
224
|
requirements:
|
163
225
|
- - ">="
|
164
226
|
- !ruby/object:Gem::Version
|
165
|
-
version:
|
227
|
+
version: 2.5.0
|
166
228
|
required_rubygems_version: !ruby/object:Gem::Requirement
|
167
229
|
requirements:
|
168
230
|
- - ">="
|
169
231
|
- !ruby/object:Gem::Version
|
170
232
|
version: '0'
|
171
233
|
requirements: []
|
172
|
-
|
173
|
-
|
174
|
-
signing_key:
|
234
|
+
rubygems_version: 3.1.4
|
235
|
+
signing_key:
|
175
236
|
specification_version: 4
|
176
237
|
summary: new cqm validator library
|
177
238
|
test_files: []
|