cqm-reports 2.0.4 → 2.1.0
Sign up to get free protection for your applications and to get access to all the features.
- checksums.yaml +5 -5
- data/Gemfile +0 -1
- data/README.md +27 -0
- data/lib/cqm_report.rb +1 -4
- data/lib/qrda-export/catI-r5/_header.mustache +2 -2
- data/lib/qrda-export/catI-r5/qrda1_r5.mustache +2 -2
- data/lib/qrda-export/catI-r5/qrda1_r5.rb +24 -2
- data/lib/qrda-export/catI-r5/qrda_header/_record_target.mustache +24 -11
- data/lib/qrda-export/catI-r5/qrda_templates/allergy_intolerance.mustache +1 -6
- data/lib/qrda-export/catI-r5/qrda_templates/communication_performed.mustache +2 -2
- data/lib/qrda-export/catI-r5/qrda_templates/diagnosis.mustache +1 -6
- data/lib/qrda-export/catI-r5/qrda_templates/immunization_administered.mustache +7 -2
- data/lib/qrda-export/catI-r5/qrda_templates/medication_discharge.mustache +0 -2
- data/lib/qrda-export/catI-r5/qrda_templates/substance_recommended.mustache +1 -0
- data/lib/qrda-export/catI-r5/qrda_templates/symptom.mustache +1 -6
- data/lib/qrda-export/catI-r5/qrda_templates/template_partials/_medication_supply_request.mustache +1 -1
- data/lib/qrda-export/helper/cat1_view_helper.rb +2 -0
- data/lib/qrda-import/base-importers/demographics_importer.rb +3 -3
- data/lib/qrda-import/base-importers/section_importer.rb +44 -10
- data/lib/qrda-import/data-element-importers/diagnostic_study_performed_importer.rb +1 -1
- data/lib/qrda-import/data-element-importers/encounter_performed_importer.rb +10 -0
- data/lib/qrda-import/data-element-importers/immunization_order_importer.rb +1 -1
- data/lib/qrda-import/patient_importer.rb +85 -63
- metadata +18 -6
- data/lib/ext/code.rb +0 -11
- data/lib/ext/data_element.rb +0 -24
- data/lib/qrda-import/entry_package.rb +0 -16
checksums.yaml
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
---
|
|
2
|
-
|
|
3
|
-
metadata.gz:
|
|
4
|
-
data.tar.gz:
|
|
2
|
+
SHA1:
|
|
3
|
+
metadata.gz: e8ef5e1f1c6d14646a8d523109b41d9d9609503c
|
|
4
|
+
data.tar.gz: 1ccc64f200b387965a3271501cb933e795435cba
|
|
5
5
|
SHA512:
|
|
6
|
-
metadata.gz:
|
|
7
|
-
data.tar.gz:
|
|
6
|
+
metadata.gz: 62af1b280c4701bed265910f768bb6d19be6f087bd028b022b9cdfbd4b02fae834252fc1ed0798e6555b4e978962f9e4d237d27c9528523cc5c6ba89d8ace2e1
|
|
7
|
+
data.tar.gz: 71cc7d395c9af17f8d946e28ac108f25142c9d2e4e6028e4799e8297fb8a5fc47f1b898939554cbd7616494320ec9d79c8caa489fc8bda0b60f3eb4050f8d69f
|
data/Gemfile
CHANGED
data/README.md
CHANGED
|
@@ -18,6 +18,33 @@ Starting with version **2.0.0** released on 6/20/2019, cqm-reports versioning ha
|
|
|
18
18
|
|
|
19
19
|
For the versions available, see [tags on this repository](https://github.com/projecttacoma/cqm-validators/tags).
|
|
20
20
|
|
|
21
|
+
=======
|
|
22
|
+
Importing QRDA
|
|
23
|
+
==========
|
|
24
|
+
|
|
25
|
+
A QRDA document can be imported into a CQM::Patient (defined in [cqm-models](https://github.com/projecttacoma/cqm-models)) using the following commands.
|
|
26
|
+
|
|
27
|
+
doc = Nokogiri::XML(file)
|
|
28
|
+
patient, warnings = QRDA::Cat1::PatientImporter.instance.parse_cat1(doc)
|
|
29
|
+
|
|
30
|
+
Exporting QRDA Category I
|
|
31
|
+
==========
|
|
32
|
+
|
|
33
|
+
Exporting a QRDA document from a CQM::Patient (defined in [cqm-models](https://github.com/projecttacoma/cqm-models)) using the following command.
|
|
34
|
+
|
|
35
|
+
Qrda1R5.new(patient, measures, options).render
|
|
36
|
+
* patient is a [CQM::Patient](https://github.com/projecttacoma/cqm-models/blob/master/app/models/cqm/patient.rb)
|
|
37
|
+
* measures is an array of [CQM::Measure](https://github.com/projecttacoma/cqm-models/blob/master/app/models/cqm/measure.rb)
|
|
38
|
+
* options is a hash that can be used to pass in:
|
|
39
|
+
* provider
|
|
40
|
+
* patient_addresses
|
|
41
|
+
* patient_telecoms
|
|
42
|
+
* start_time
|
|
43
|
+
* end_time
|
|
44
|
+
* submission_program
|
|
45
|
+
|
|
46
|
+
QRDA export requires the [mustache](https://github.com/mustache/mustache) gem
|
|
47
|
+
|
|
21
48
|
## License
|
|
22
49
|
|
|
23
50
|
Copyright 2019 The MITRE Corporation
|
data/lib/cqm_report.rb
CHANGED
|
@@ -18,7 +18,6 @@ require_relative 'html-export/qdm-patient/qdm_patient.rb'
|
|
|
18
18
|
require_relative 'qrda-export/catI-r5/qrda1_r5.rb'
|
|
19
19
|
require_relative 'qrda-export/catIII-r2-1/qrda3_r21.rb'
|
|
20
20
|
|
|
21
|
-
require_relative 'qrda-import/entry_package.rb'
|
|
22
21
|
require_relative 'qrda-import/cda_identifier.rb'
|
|
23
22
|
require_relative 'qrda-import/narrative_reference_handler.rb'
|
|
24
23
|
require_relative 'qrda-import/entry_finder.rb'
|
|
@@ -72,6 +71,4 @@ require_relative 'qrda-import/data-element-importers/substance_administered_impo
|
|
|
72
71
|
require_relative 'qrda-import/data-element-importers/substance_order_importer.rb'
|
|
73
72
|
require_relative 'qrda-import/data-element-importers/substance_recommended_importer.rb'
|
|
74
73
|
require_relative 'qrda-import/data-element-importers/symptom_importer.rb'
|
|
75
|
-
require_relative 'qrda-import/patient_importer.rb'
|
|
76
|
-
require_relative 'ext/data_element.rb'
|
|
77
|
-
require_relative 'ext/code.rb'
|
|
74
|
+
require_relative 'qrda-import/patient_importer.rb'
|
|
@@ -6,9 +6,9 @@
|
|
|
6
6
|
<!-- QRDA templateId -->
|
|
7
7
|
<templateId root="2.16.840.1.113883.10.20.24.1.1" extension="2017-08-01"/>
|
|
8
8
|
<!-- QDM-based QRDA templateId -->
|
|
9
|
-
<templateId root="2.16.840.1.113883.10.20.24.1.2" extension="
|
|
9
|
+
<templateId root="2.16.840.1.113883.10.20.24.1.2" extension="2018-10-01"/>
|
|
10
10
|
<!-- CMS QRDA templateId -->
|
|
11
|
-
<templateId root="2.16.840.1.113883.10.20.24.1.3" extension="
|
|
11
|
+
<templateId root="2.16.840.1.113883.10.20.24.1.3" extension="2019-02-01"/>
|
|
12
12
|
<!-- This is the globally unique identifier for this QRDA document -->
|
|
13
13
|
<id root="{{random_id}}"/>
|
|
14
14
|
<!-- QRDA document type code -->
|
|
@@ -12,8 +12,8 @@
|
|
|
12
12
|
<!-- This is the templateId for Patient Data section -->
|
|
13
13
|
<templateId root="2.16.840.1.113883.10.20.17.2.4"/>
|
|
14
14
|
<!-- This is the templateId for Patient Data QDM section -->
|
|
15
|
-
<templateId extension="
|
|
16
|
-
<templateId extension="
|
|
15
|
+
<templateId extension="2018-10-01" root="2.16.840.1.113883.10.20.24.2.1"/>
|
|
16
|
+
<templateId extension="2019-02-01" root="2.16.840.1.113883.10.20.24.2.1.1"/>
|
|
17
17
|
<code code="55188-7" codeSystem="2.16.840.1.113883.6.1"/>
|
|
18
18
|
<title>Patient Data</title>
|
|
19
19
|
<text/>
|
|
@@ -13,11 +13,33 @@ class Qrda1R5 < Mustache
|
|
|
13
13
|
@qdmPatient = patient.qdmPatient
|
|
14
14
|
@measures = measures
|
|
15
15
|
@provider = options[:provider]
|
|
16
|
+
@patient_address_option = options[:patient_addresses]
|
|
17
|
+
@patient_telecom_option = options[:patient_telecoms]
|
|
16
18
|
@performance_period_start = options[:start_time]
|
|
17
19
|
@performance_period_end = options[:end_time]
|
|
18
20
|
@submission_program = options[:submission_program]
|
|
19
21
|
end
|
|
20
22
|
|
|
23
|
+
def patient_addresses
|
|
24
|
+
@patient_address_option ||= [CQM::Address.new(
|
|
25
|
+
use: 'HP',
|
|
26
|
+
street: ['202 Burlington Rd.'],
|
|
27
|
+
city: 'Bedford',
|
|
28
|
+
state: 'MA',
|
|
29
|
+
zip: '01730',
|
|
30
|
+
country: 'US'
|
|
31
|
+
)]
|
|
32
|
+
JSON.parse(@patient_address_option.to_json)
|
|
33
|
+
end
|
|
34
|
+
|
|
35
|
+
def patient_telecoms
|
|
36
|
+
@patient_telecom_option ||= [CQM::Telecom.new(
|
|
37
|
+
use: 'HP',
|
|
38
|
+
value: '555-555-2003'
|
|
39
|
+
)]
|
|
40
|
+
JSON.parse(@patient_telecom_option.to_json)
|
|
41
|
+
end
|
|
42
|
+
|
|
21
43
|
def patient_characteristic_payer
|
|
22
44
|
JSON.parse(@qdmPatient.get_data_elements('patient_characteristic', 'payer').to_json)
|
|
23
45
|
end
|
|
@@ -173,7 +195,7 @@ class Qrda1R5 < Mustache
|
|
|
173
195
|
def physical_exam_order
|
|
174
196
|
JSON.parse(@qdmPatient.get_data_elements('physical_exam', 'order').to_json)
|
|
175
197
|
end
|
|
176
|
-
|
|
198
|
+
|
|
177
199
|
def physical_exam_performed
|
|
178
200
|
JSON.parse(@qdmPatient.get_data_elements('physical_exam', 'performed').to_json)
|
|
179
201
|
end
|
|
@@ -213,7 +235,7 @@ class Qrda1R5 < Mustache
|
|
|
213
235
|
def substance_recommended
|
|
214
236
|
JSON.parse(@qdmPatient.get_data_elements('substance', 'recommended').to_json)
|
|
215
237
|
end
|
|
216
|
-
|
|
238
|
+
|
|
217
239
|
def symptom
|
|
218
240
|
JSON.parse(@qdmPatient.get_data_elements('symptom', nil).to_json)
|
|
219
241
|
end
|
|
@@ -1,14 +1,20 @@
|
|
|
1
1
|
<recordTarget>
|
|
2
2
|
<patientRole>
|
|
3
3
|
<id extension="{{mrn}}" root="1.3.6.1.4.1.115" />
|
|
4
|
-
|
|
5
|
-
<
|
|
6
|
-
|
|
7
|
-
|
|
8
|
-
|
|
9
|
-
|
|
10
|
-
|
|
11
|
-
|
|
4
|
+
{{#patient_addresses}}
|
|
5
|
+
<addr use="{{use}}">
|
|
6
|
+
{{#street}}
|
|
7
|
+
<streetAddressLine>{{.}}</streetAddressLine>
|
|
8
|
+
{{/street}}
|
|
9
|
+
<city>{{city}}</city>
|
|
10
|
+
<state>{{state}}</state>
|
|
11
|
+
<postalCode>{{zip}}</postalCode>
|
|
12
|
+
<country>{{country}}</country>
|
|
13
|
+
</addr>
|
|
14
|
+
{{/patient_addresses}}
|
|
15
|
+
{{#patient_telecoms}}
|
|
16
|
+
<telecom use="{{use}}" value="tel:{{value}}"/>
|
|
17
|
+
{{/patient_telecoms}}
|
|
12
18
|
<patient>
|
|
13
19
|
{{#patient}}
|
|
14
20
|
<name>
|
|
@@ -21,6 +27,9 @@
|
|
|
21
27
|
<administrativeGenderCode {{> _code}}/>
|
|
22
28
|
{{/dataElementCodes}}
|
|
23
29
|
{{/patient_characteristic_sex}}
|
|
30
|
+
{{^patient_characteristic_sex}}
|
|
31
|
+
<administrativeGenderCode nullFlavor="UNK"/>
|
|
32
|
+
{{/patient_characteristic_sex}}
|
|
24
33
|
{{#patient_characteristic_birthdate}}
|
|
25
34
|
{{{birth_date_time}}}
|
|
26
35
|
{{/patient_characteristic_birthdate}}
|
|
@@ -29,16 +38,20 @@
|
|
|
29
38
|
<raceCode {{> _code}}/>
|
|
30
39
|
{{/dataElementCodes}}
|
|
31
40
|
{{/patient_characteristic_race}}
|
|
41
|
+
{{^patient_characteristic_race}}
|
|
42
|
+
<raceCode nullFlavor="UNK"/>
|
|
43
|
+
{{/patient_characteristic_race}}
|
|
32
44
|
{{#patient_characteristic_ethnicity}}
|
|
33
45
|
{{#dataElementCodes}}
|
|
34
46
|
<ethnicGroupCode {{> _code}}/>
|
|
35
47
|
{{/dataElementCodes}}
|
|
36
48
|
{{/patient_characteristic_ethnicity}}
|
|
49
|
+
{{^patient_characteristic_ethnicity}}
|
|
50
|
+
<ethnicGroupCode nullFlavor="UNK"/>
|
|
51
|
+
{{/patient_characteristic_ethnicity}}
|
|
37
52
|
<languageCommunication>
|
|
38
|
-
<templateId root="2.16.840.1.113883.3.88.11.83.2" assigningAuthorityName="HITSP/C83"/>
|
|
39
|
-
<templateId root="1.3.6.1.4.1.19376.1.5.3.1.2.1" assigningAuthorityName="IHE/PCC"/>
|
|
40
53
|
<languageCode code="eng"/>
|
|
41
54
|
</languageCommunication>
|
|
42
55
|
</patient>
|
|
43
56
|
</patientRole>
|
|
44
|
-
</recordTarget>
|
|
57
|
+
</recordTarget>
|
|
@@ -6,13 +6,8 @@
|
|
|
6
6
|
<templateId root="2.16.840.1.113883.10.20.24.3.147" extension="2017-08-01"/>
|
|
7
7
|
<id root="1.3.6.1.4.1.115" extension="{{object_id}}"/>
|
|
8
8
|
<code code="ASSERTION" codeSystem="2.16.840.1.113883.5.4"/>
|
|
9
|
-
{{#prevalencePeriod}}
|
|
10
|
-
{{#completed_prevalence_period}}
|
|
11
9
|
<statusCode code="completed" />
|
|
12
|
-
{{
|
|
13
|
-
{{^completed_prevalence_period}}
|
|
14
|
-
<statusCode code="active" />
|
|
15
|
-
{{/completed_prevalence_period}}
|
|
10
|
+
{{#prevalencePeriod}}
|
|
16
11
|
<!-- QDM Attribute: Prevalence Period -->
|
|
17
12
|
{{{prevalence_period}}}
|
|
18
13
|
{{/prevalencePeriod}}
|
|
@@ -8,7 +8,7 @@
|
|
|
8
8
|
{{/category}}
|
|
9
9
|
{{^category}}
|
|
10
10
|
<!-- QDM Attribute: Category -->
|
|
11
|
-
<code nullFlavor="
|
|
11
|
+
<code nullFlavor="NA"/>
|
|
12
12
|
{{/category}}
|
|
13
13
|
<statusCode code="completed"/>
|
|
14
14
|
{{#relevantPeriod}}
|
|
@@ -48,7 +48,7 @@
|
|
|
48
48
|
{{/negationRationale}}
|
|
49
49
|
<entryRelationship typeCode="REFR">
|
|
50
50
|
<observation classCode="OBS" moodCode="EVN">
|
|
51
|
-
<templateId root="2.16.840.1.113883.10.20.24.3.88" extension="
|
|
51
|
+
<templateId root="2.16.840.1.113883.10.20.24.3.88" extension="2017-08-01"/>
|
|
52
52
|
<id root="1.3.6.1.4.1.115" extension="{{object_id}}" />
|
|
53
53
|
<code code="77301-0" codeSystem="2.16.840.1.113883.6.1" displayName="reason" codeSystemName="LOINC"/>
|
|
54
54
|
<statusCode code="completed"/>
|
|
@@ -25,13 +25,8 @@
|
|
|
25
25
|
<code code="29308-4" codeSystem="2.16.840.1.113883.6.1">
|
|
26
26
|
<translation code="282291009" codeSystem="2.16.840.1.113883.6.96"/>
|
|
27
27
|
</code>
|
|
28
|
-
{{#prevalencePeriod}}
|
|
29
|
-
{{#completed_prevalence_period}}
|
|
30
28
|
<statusCode code="completed" />
|
|
31
|
-
{{
|
|
32
|
-
{{^completed_prevalence_period}}
|
|
33
|
-
<statusCode code="active" />
|
|
34
|
-
{{/completed_prevalence_period}}
|
|
29
|
+
{{#prevalencePeriod}}
|
|
35
30
|
<!-- QDM Attribute: Prevalence Period -->
|
|
36
31
|
{{{prevalence_period}}}
|
|
37
32
|
{{/prevalencePeriod}}
|
|
@@ -1,7 +1,12 @@
|
|
|
1
1
|
<entry>
|
|
2
|
-
|
|
2
|
+
{{#negated}}
|
|
3
|
+
<substanceAdministration classCode="SBADM" moodCode="EVN" {{{negation_ind}}}>
|
|
4
|
+
{{/negated}}
|
|
5
|
+
{{^negated}}
|
|
6
|
+
<substanceAdministration classCode="SBADM" moodCode="EVN" negationInd="false">
|
|
7
|
+
{{/negated}}
|
|
3
8
|
<!-- C-CDA R2 Immunization Activity -->
|
|
4
|
-
<templateId root="2.16.840.1.113883.10.20.22.4.52" extension="
|
|
9
|
+
<templateId root="2.16.840.1.113883.10.20.22.4.52" extension="2015-08-01"/>
|
|
5
10
|
<!-- Immunization Administered -->
|
|
6
11
|
<templateId root="2.16.840.1.113883.10.20.24.3.140" extension="2017-08-01"/>
|
|
7
12
|
<id root="1.3.6.1.4.1.115" extension="{{object_id}}"/>
|
|
@@ -9,8 +9,6 @@
|
|
|
9
9
|
<substanceAdministration moodCode="EVN" classCode="SBADM">
|
|
10
10
|
<!-- Medication Activity (consolidation) template -->
|
|
11
11
|
<templateId root="2.16.840.1.113883.10.20.22.4.16" extension="2014-06-09"/>
|
|
12
|
-
<!-- Medication, Active template -->
|
|
13
|
-
<templateId root="2.16.840.1.113883.10.20.24.3.41" extension="2016-02-01"/>
|
|
14
12
|
<id root="1.3.6.1.4.1.115" extension="{{object_id}}"/>
|
|
15
13
|
<text>{{description}}</text>
|
|
16
14
|
<statusCode code="active"/>
|
|
@@ -6,6 +6,7 @@
|
|
|
6
6
|
<templateId root="2.16.840.1.113883.10.20.24.3.75" extension="2017-08-01"/>
|
|
7
7
|
<id root="1.3.6.1.4.1.115" extension="{{object_id}}"/>
|
|
8
8
|
<statusCode code="active"/>
|
|
9
|
+
{{{author_effective_time}}}
|
|
9
10
|
{{> qrda_templates/template_partials/_medication_details}}
|
|
10
11
|
<consumable>
|
|
11
12
|
<manufacturedProduct classCode="MANU">
|
|
@@ -25,13 +25,8 @@
|
|
|
25
25
|
<code code="75325-1" codeSystem="2.16.840.1.113883.6.1">
|
|
26
26
|
<translation code="418799008" displayName="Symptom" codeSystem="2.16.840.1.113883.6.96"/>
|
|
27
27
|
</code>
|
|
28
|
-
{{#prevalencePeriod}}
|
|
29
|
-
{{#completed_prevalence_period}}
|
|
30
28
|
<statusCode code="completed" />
|
|
31
|
-
{{
|
|
32
|
-
{{^completed_prevalence_period}}
|
|
33
|
-
<statusCode code="active" />
|
|
34
|
-
{{/completed_prevalence_period}}
|
|
29
|
+
{{#prevalencePeriod}}
|
|
35
30
|
<!-- QDM Attribute: Prevalence Period -->
|
|
36
31
|
{{{prevalence_period}}}
|
|
37
32
|
{{/prevalencePeriod}}
|
data/lib/qrda-export/catI-r5/qrda_templates/template_partials/_medication_supply_request.mustache
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
<supply classCode="SPLY" moodCode="RQO">
|
|
2
2
|
<!-- Medication Supply Request (V2) template -->
|
|
3
|
-
<templateId root="2.16.840.1.113883.10.20.24.3.99" extension="
|
|
3
|
+
<templateId root="2.16.840.1.113883.10.20.24.3.99" extension="2015-04-05"/>
|
|
4
4
|
<!-- Conforms to C-CDA R2 Planned Supply (V2) template-->
|
|
5
5
|
<templateId root="2.16.840.1.113883.10.20.22.4.43" extension="2014-06-09" />
|
|
6
6
|
<id root="{{random_id}}"/>
|
|
@@ -67,6 +67,8 @@ module Qrda
|
|
|
67
67
|
result_value_as_string(self['result'][0])
|
|
68
68
|
elsif self['result'].is_a? Hash
|
|
69
69
|
result_value_as_string(self['result'])
|
|
70
|
+
elsif self['result'].is_a? String
|
|
71
|
+
"<value xsi:type=\"ST\">#{self['result']}</value>"
|
|
70
72
|
elsif !self['result'].nil?
|
|
71
73
|
"<value xsi:type=\"PQ\" value=\"#{self['result']}\" unit=\"1\"/>"
|
|
72
74
|
end
|
|
@@ -15,17 +15,17 @@ module QRDA
|
|
|
15
15
|
pcs = QDM::PatientCharacteristicSex.new
|
|
16
16
|
code_element = patient_element.at_xpath('cda:administrativeGenderCode')
|
|
17
17
|
pcs.dataElementCodes = [code_if_present(code_element)]
|
|
18
|
-
patient.qdmPatient.dataElements << pcs
|
|
18
|
+
patient.qdmPatient.dataElements << pcs unless pcs.dataElementCodes.compact.blank?
|
|
19
19
|
|
|
20
20
|
pcr = QDM::PatientCharacteristicRace.new
|
|
21
21
|
code_element = patient_element.at_xpath('cda:raceCode')
|
|
22
22
|
pcr.dataElementCodes = [code_if_present(code_element)]
|
|
23
|
-
patient.qdmPatient.dataElements << pcr
|
|
23
|
+
patient.qdmPatient.dataElements << pcr unless pcr.dataElementCodes.compact.blank?
|
|
24
24
|
|
|
25
25
|
pce = QDM::PatientCharacteristicEthnicity.new
|
|
26
26
|
code_element = patient_element.at_xpath('cda:ethnicGroupCode')
|
|
27
27
|
pce.dataElementCodes = [code_if_present(code_element)]
|
|
28
|
-
patient.qdmPatient.dataElements << pce
|
|
28
|
+
patient.qdmPatient.dataElements << pce unless pce.dataElementCodes.compact.blank?
|
|
29
29
|
end
|
|
30
30
|
|
|
31
31
|
def code_if_present(code_element)
|
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
module QRDA
|
|
2
2
|
module Cat1
|
|
3
3
|
class SectionImporter
|
|
4
|
-
attr_accessor :check_for_usable, :status_xpath, :code_xpath
|
|
4
|
+
attr_accessor :check_for_usable, :status_xpath, :code_xpath, :warnings, :codes_modifiers
|
|
5
5
|
|
|
6
6
|
def initialize(entry_finder)
|
|
7
7
|
@entry_finder = entry_finder
|
|
@@ -9,6 +9,8 @@ module QRDA
|
|
|
9
9
|
@entry_id_map = {}
|
|
10
10
|
@check_for_usable = true
|
|
11
11
|
@entry_class = QDM::DataElement
|
|
12
|
+
@warnings = []
|
|
13
|
+
@codes_modifiers = {}
|
|
12
14
|
end
|
|
13
15
|
|
|
14
16
|
# Traverses an HL7 CDA document passed in and creates an Array of Entry
|
|
@@ -41,7 +43,7 @@ module QRDA
|
|
|
41
43
|
# This is the id found in the QRDA file
|
|
42
44
|
entry_qrda_id = extract_id(entry_element, @id_xpath)
|
|
43
45
|
# Create a hash to map all of entry.ids to the same QRDA ids. This will be used to merge QRDA entries
|
|
44
|
-
# that represent the same event.
|
|
46
|
+
# that represent the same event.
|
|
45
47
|
@entry_id_map["#{entry_qrda_id.value}_#{entry_qrda_id.namingSystem}"] ||= []
|
|
46
48
|
@entry_id_map["#{entry_qrda_id.value}_#{entry_qrda_id.namingSystem}"] << entry.id
|
|
47
49
|
entry.dataElementCodes = extract_codes(entry_element, @code_xpath)
|
|
@@ -90,6 +92,7 @@ module QRDA
|
|
|
90
92
|
end
|
|
91
93
|
|
|
92
94
|
def extract_interval(parent_element, interval_xpath)
|
|
95
|
+
return nil unless parent_element.at_xpath(interval_xpath)
|
|
93
96
|
if parent_element.at_xpath("#{interval_xpath}/@value")
|
|
94
97
|
low_time = DateTime.parse(parent_element.at_xpath(interval_xpath)['value'])
|
|
95
98
|
high_time = DateTime.parse(parent_element.at_xpath(interval_xpath)['value'])
|
|
@@ -108,6 +111,21 @@ module QRDA
|
|
|
108
111
|
low_time = Time.parse(parent_element.at_xpath("#{interval_xpath}/cda:center")['value'])
|
|
109
112
|
high_time = Time.parse(parent_element.at_xpath("#{interval_xpath}/cda:center")['value'])
|
|
110
113
|
end
|
|
114
|
+
if low_time && high_time && low_time > high_time
|
|
115
|
+
# pass warning: current code continues as expected, but adds warning
|
|
116
|
+
id_attr = parent_element.at_xpath(".//cda:id")&.attributes
|
|
117
|
+
id_str = id_attr ? "and id: #{id_attr['root']&.value}(root), #{id_attr['extension']&.value}(extension)" : ""
|
|
118
|
+
qrda_type = @entry_class.to_s.split("::")[1]
|
|
119
|
+
@warnings << ValidationError.new(message: "Interval with low time after high time. Located in element with QRDA type: #{qrda_type} #{id_str}",
|
|
120
|
+
location: parent_element.path)
|
|
121
|
+
end
|
|
122
|
+
if low_time.nil? && high_time.nil?
|
|
123
|
+
id_attr = parent_element.at_xpath(".//cda:id")&.attributes
|
|
124
|
+
id_str = id_attr ? "and id: #{id_attr['root']&.value}(root), #{id_attr['extension']&.value}(extension)" : ""
|
|
125
|
+
qrda_type = @entry_class.to_s.split("::")[1]
|
|
126
|
+
@warnings << ValidationError.new(message: "Interval with nullFlavor low time and nullFlavor high time. Located in element with QRDA type: #{qrda_type} #{id_str}",
|
|
127
|
+
location: parent_element.path)
|
|
128
|
+
end
|
|
111
129
|
QDM::Interval.new(low_time, high_time).shift_dates(0)
|
|
112
130
|
end
|
|
113
131
|
|
|
@@ -150,12 +168,11 @@ module QRDA
|
|
|
150
168
|
parent_element.xpath(@result_xpath).each do |elem|
|
|
151
169
|
result << extract_result_value(elem)
|
|
152
170
|
end
|
|
153
|
-
result.size > 1 ? result : result.first
|
|
171
|
+
result.size > 1 ? result : result.first
|
|
154
172
|
end
|
|
155
173
|
|
|
156
174
|
def extract_result_value(value_element)
|
|
157
175
|
return unless value_element && !value_element['nullFlavor']
|
|
158
|
-
|
|
159
176
|
value = value_element['value']
|
|
160
177
|
if value.present?
|
|
161
178
|
return value.strip.to_f if (value_element['unit'] == "1" || value_element['unit'].nil?)
|
|
@@ -163,6 +180,13 @@ module QRDA
|
|
|
163
180
|
return QDM::Quantity.new(value.strip.to_f, value_element['unit'])
|
|
164
181
|
elsif value_element['code'].present?
|
|
165
182
|
return code_if_present(value_element)
|
|
183
|
+
elsif value_element.text.present?
|
|
184
|
+
id_attr = value_element.parent.at_xpath(".//cda:id")&.attributes
|
|
185
|
+
id_str = id_attr ? "and id: #{id_attr['root']&.value}(root), #{id_attr['extension']&.value}(extension)" : ""
|
|
186
|
+
qrda_type = @entry_class.to_s.split("::")[1]
|
|
187
|
+
@warnings << ValidationError.new(message: "Value with string type found. When possible, it's best practice to use a coded value or scalar. Located in element with QRDA type: #{qrda_type} #{id_str}",
|
|
188
|
+
location: value_element.path)
|
|
189
|
+
return value_element.text
|
|
166
190
|
end
|
|
167
191
|
end
|
|
168
192
|
|
|
@@ -172,16 +196,16 @@ module QRDA
|
|
|
172
196
|
negation_indicator = parent_element['negationInd']
|
|
173
197
|
# Return and do not set reason attribute if the entry is negated
|
|
174
198
|
return nil if negation_indicator.eql?('true')
|
|
175
|
-
|
|
176
|
-
reason_element.blank? ? nil : code_if_present(reason_element.first)
|
|
199
|
+
|
|
200
|
+
reason_element.blank? ? nil : code_if_present(reason_element.first)
|
|
177
201
|
end
|
|
178
202
|
|
|
179
203
|
def extract_negation(parent_element, entry)
|
|
180
204
|
negation_element = parent_element.xpath("./cda:entryRelationship[@typeCode='RSON']/cda:observation[cda:templateId/@root='2.16.840.1.113883.10.20.24.3.88']/cda:value")
|
|
181
205
|
negation_indicator = parent_element['negationInd']
|
|
182
206
|
# Return and do not set negationRationale attribute if the entry is not negated
|
|
183
|
-
return unless negation_indicator.eql?('true')
|
|
184
|
-
|
|
207
|
+
return unless negation_indicator.eql?('true')
|
|
208
|
+
|
|
185
209
|
entry.negationRationale = code_if_present(negation_element.first) unless negation_element.blank?
|
|
186
210
|
extract_negated_code(parent_element, entry)
|
|
187
211
|
end
|
|
@@ -189,8 +213,18 @@ module QRDA
|
|
|
189
213
|
def extract_negated_code(parent_element, entry)
|
|
190
214
|
code_elements = parent_element.xpath(@code_xpath)
|
|
191
215
|
code_elements.each do |code_element|
|
|
192
|
-
if code_element['nullFlavor'] == 'NA'
|
|
193
|
-
|
|
216
|
+
if code_element['nullFlavor'] == 'NA'
|
|
217
|
+
if code_element['sdtc:valueSet']
|
|
218
|
+
entry.dataElementCodes = [{ code: code_element['sdtc:valueSet'], codeSystemOid: '1.2.3.4.5.6.7.8.9.10' }]
|
|
219
|
+
else
|
|
220
|
+
# negated code is nullFlavored with no valueset
|
|
221
|
+
entry.dataElementCodes = [{ code: "NA", codeSystemOid: '1.2.3.4.5.6.7.8.9.10' }]
|
|
222
|
+
id_attr = parent_element.at_xpath(".//cda:id")&.attributes
|
|
223
|
+
id_str = id_attr ? "and id: #{id_attr['root']&.value}(root), #{id_attr['extension']&.value}(extension)" : ""
|
|
224
|
+
qrda_type = @entry_class.to_s.split("::")[1]
|
|
225
|
+
@warnings << ValidationError.new(message: "Negated code element contains nullFlavor code but no valueset. Located in element with QRDA type: #{qrda_type} #{id_str}.",
|
|
226
|
+
location: parent_element.path)
|
|
227
|
+
end
|
|
194
228
|
end
|
|
195
229
|
end
|
|
196
230
|
end
|
|
@@ -20,7 +20,7 @@ module QRDA
|
|
|
20
20
|
def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
|
|
21
21
|
diagnostic_study_performed = super
|
|
22
22
|
diagnostic_study_performed.resultDatetime = extract_time(entry_element, @result_datetime_xpath)
|
|
23
|
-
diagnostic_study_performed.resultDatetime ||= extract_interval(entry_element, @result_datetime_xpath)
|
|
23
|
+
diagnostic_study_performed.resultDatetime ||= extract_interval(entry_element, @result_datetime_xpath)&.low
|
|
24
24
|
diagnostic_study_performed.status = code_if_present(entry_element.at_xpath(@status_xpath))
|
|
25
25
|
diagnostic_study_performed.method = code_if_present(entry_element.at_xpath(@method_xpath))
|
|
26
26
|
diagnostic_study_performed.facilityLocation = extract_facility_locations(entry_element)[0]
|
|
@@ -26,11 +26,21 @@ module QRDA
|
|
|
26
26
|
los = encounter_performed.relevantPeriod.high - encounter_performed.relevantPeriod.low
|
|
27
27
|
encounter_performed.lengthOfStay = QDM::Quantity.new(los.to_i, 'd')
|
|
28
28
|
end
|
|
29
|
+
extract_modifier_code(encounter_performed, entry_element)
|
|
29
30
|
encounter_performed
|
|
30
31
|
end
|
|
31
32
|
|
|
32
33
|
private
|
|
33
34
|
|
|
35
|
+
def extract_modifier_code(encounter_performed, entry_element)
|
|
36
|
+
code_element = entry_element.at_xpath(@code_xpath)
|
|
37
|
+
return unless code_element
|
|
38
|
+
|
|
39
|
+
qualifier_name = code_element.at_xpath('./cda:qualifier/cda:name')
|
|
40
|
+
qualifier_value = code_element.at_xpath('./cda:qualifier/cda:value')
|
|
41
|
+
codes_modifiers[encounter_performed.id] = { name: code_if_present(qualifier_name), value: code_if_present(qualifier_value), xpath_location: entry_element.path } if qualifier_value || qualifier_name
|
|
42
|
+
end
|
|
43
|
+
|
|
34
44
|
def extract_diagnoses(parent_element)
|
|
35
45
|
diagnosis_elements = parent_element.xpath(@diagnosis_xpath)
|
|
36
46
|
diagnosis_list = []
|
|
@@ -16,7 +16,7 @@ module QRDA
|
|
|
16
16
|
|
|
17
17
|
def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
|
|
18
18
|
immunization_order = super
|
|
19
|
-
immunization_order.activeDatetime = extract_interval(entry_element, @active_datetime_xpath)
|
|
19
|
+
immunization_order.activeDatetime = extract_interval(entry_element, @active_datetime_xpath)&.low
|
|
20
20
|
immunization_order.dosage = extract_scalar(entry_element, @dosage_xpath)
|
|
21
21
|
immunization_order.supply = extract_scalar(entry_element, @supply_xpath)
|
|
22
22
|
immunization_order.route = code_if_present(entry_element.at_xpath(@route_xpath))
|
|
@@ -12,89 +12,117 @@ module QRDA
|
|
|
12
12
|
def initialize
|
|
13
13
|
# This differs from other HDS patient importers in that sections can have multiple importers
|
|
14
14
|
@data_element_importers = []
|
|
15
|
-
@data_element_importers <<
|
|
16
|
-
@data_element_importers <<
|
|
17
|
-
@data_element_importers <<
|
|
18
|
-
@data_element_importers <<
|
|
19
|
-
@data_element_importers <<
|
|
20
|
-
@data_element_importers <<
|
|
21
|
-
@data_element_importers <<
|
|
22
|
-
@data_element_importers <<
|
|
23
|
-
@data_element_importers <<
|
|
24
|
-
@data_element_importers <<
|
|
25
|
-
@data_element_importers <<
|
|
26
|
-
@data_element_importers <<
|
|
27
|
-
@data_element_importers <<
|
|
28
|
-
@data_element_importers <<
|
|
29
|
-
@data_element_importers <<
|
|
30
|
-
@data_element_importers <<
|
|
31
|
-
@data_element_importers <<
|
|
32
|
-
@data_element_importers <<
|
|
33
|
-
@data_element_importers <<
|
|
34
|
-
@data_element_importers <<
|
|
35
|
-
@data_element_importers <<
|
|
36
|
-
@data_element_importers <<
|
|
37
|
-
@data_element_importers <<
|
|
38
|
-
@data_element_importers <<
|
|
39
|
-
@data_element_importers <<
|
|
40
|
-
@data_element_importers <<
|
|
41
|
-
@data_element_importers <<
|
|
42
|
-
@data_element_importers <<
|
|
43
|
-
@data_element_importers <<
|
|
44
|
-
@data_element_importers <<
|
|
45
|
-
@data_element_importers <<
|
|
46
|
-
@data_element_importers <<
|
|
47
|
-
@data_element_importers <<
|
|
48
|
-
@data_element_importers <<
|
|
49
|
-
@data_element_importers <<
|
|
50
|
-
@data_element_importers <<
|
|
51
|
-
@data_element_importers <<
|
|
52
|
-
@data_element_importers <<
|
|
53
|
-
@data_element_importers <<
|
|
54
|
-
@data_element_importers <<
|
|
55
|
-
@data_element_importers <<
|
|
56
|
-
@data_element_importers <<
|
|
57
|
-
@data_element_importers <<
|
|
58
|
-
@data_element_importers <<
|
|
59
|
-
@data_element_importers <<
|
|
60
|
-
@data_element_importers <<
|
|
15
|
+
@data_element_importers << AdverseEventImporter.new
|
|
16
|
+
@data_element_importers << AllergyIntoleranceImporter.new
|
|
17
|
+
@data_element_importers << AssessmentOrderImporter.new
|
|
18
|
+
@data_element_importers << AssessmentPerformedImporter.new
|
|
19
|
+
@data_element_importers << AssessmentRecommendedImporter.new
|
|
20
|
+
@data_element_importers << CommunicationPerformedImporter.new
|
|
21
|
+
@data_element_importers << DeviceAppliedImporter.new
|
|
22
|
+
@data_element_importers << DeviceOrderImporter.new
|
|
23
|
+
@data_element_importers << DeviceRecommendedImporter.new
|
|
24
|
+
@data_element_importers << DiagnosisImporter.new
|
|
25
|
+
@data_element_importers << DiagnosticStudyOrderImporter.new
|
|
26
|
+
@data_element_importers << DiagnosticStudyPerformedImporter.new
|
|
27
|
+
@data_element_importers << DiagnosticStudyRecommendedImporter.new
|
|
28
|
+
@data_element_importers << EncounterOrderImporter.new
|
|
29
|
+
@data_element_importers << EncounterPerformedImporter.new
|
|
30
|
+
@data_element_importers << EncounterRecommendedImporter.new
|
|
31
|
+
@data_element_importers << FamilyHistoryImporter.new
|
|
32
|
+
@data_element_importers << ImmunizationAdministeredImporter.new
|
|
33
|
+
@data_element_importers << ImmunizationOrderImporter.new
|
|
34
|
+
@data_element_importers << InterventionOrderImporter.new
|
|
35
|
+
@data_element_importers << InterventionPerformedImporter.new
|
|
36
|
+
@data_element_importers << InterventionRecommendedImporter.new
|
|
37
|
+
@data_element_importers << LaboratoryTestOrderImporter.new
|
|
38
|
+
@data_element_importers << LaboratoryTestPerformedImporter.new
|
|
39
|
+
@data_element_importers << LaboratoryTestRecommendedImporter.new
|
|
40
|
+
@data_element_importers << MedicationActiveImporter.new
|
|
41
|
+
@data_element_importers << MedicationAdministeredImporter.new
|
|
42
|
+
@data_element_importers << MedicationDischargeImporter.new
|
|
43
|
+
@data_element_importers << MedicationDispensedImporter.new
|
|
44
|
+
@data_element_importers << MedicationOrderImporter.new
|
|
45
|
+
@data_element_importers << PatientCareExperienceImporter.new
|
|
46
|
+
@data_element_importers << PatientCharacteristicClinicalTrialParticipantImporter.new
|
|
47
|
+
@data_element_importers << PatientCharacteristicExpiredImporter.new
|
|
48
|
+
@data_element_importers << PatientCharacteristicPayerImporter.new
|
|
49
|
+
@data_element_importers << PhysicalExamOrderImporter.new
|
|
50
|
+
@data_element_importers << PhysicalExamPerformedImporter.new
|
|
51
|
+
@data_element_importers << PhysicalExamRecommendedImporter.new
|
|
52
|
+
@data_element_importers << ProcedureOrderImporter.new
|
|
53
|
+
@data_element_importers << ProcedurePerformedImporter.new
|
|
54
|
+
@data_element_importers << ProcedureRecommendedImporter.new
|
|
55
|
+
@data_element_importers << ProviderCareExperienceImporter.new
|
|
56
|
+
@data_element_importers << ProviderCharacteristicImporter.new
|
|
57
|
+
@data_element_importers << SubstanceAdministeredImporter.new
|
|
58
|
+
@data_element_importers << SubstanceOrderImporter.new
|
|
59
|
+
@data_element_importers << SubstanceRecommendedImporter.new
|
|
60
|
+
@data_element_importers << SymptomImporter.new
|
|
61
61
|
end
|
|
62
62
|
|
|
63
63
|
def parse_cat1(doc)
|
|
64
64
|
patient = CQM::Patient.new
|
|
65
|
+
warnings = []
|
|
66
|
+
codes_modifiers = {}
|
|
65
67
|
entry_id_map = {}
|
|
66
|
-
import_data_elements(patient, doc, entry_id_map)
|
|
68
|
+
import_data_elements(patient, doc, entry_id_map, codes_modifiers, warnings)
|
|
67
69
|
normalize_references(patient, entry_id_map)
|
|
68
70
|
get_demographics(patient, doc)
|
|
69
|
-
patient
|
|
71
|
+
[patient, warnings, codes_modifiers]
|
|
70
72
|
end
|
|
71
73
|
|
|
72
|
-
def import_data_elements(patient, doc, entry_id_map)
|
|
74
|
+
def import_data_elements(patient, doc, entry_id_map, codes_modifiers, warnings = [])
|
|
73
75
|
context = doc.xpath("/cda:ClinicalDocument/cda:component/cda:structuredBody/cda:component/cda:section[cda:templateId/@root = '2.16.840.1.113883.10.20.24.2.1']")
|
|
74
76
|
nrh = NarrativeReferenceHandler.new
|
|
75
77
|
nrh.build_id_map(doc)
|
|
76
|
-
@data_element_importers.each do |
|
|
77
|
-
data_elements, id_map =
|
|
78
|
+
@data_element_importers.each do |importer|
|
|
79
|
+
data_elements, id_map = importer.create_entries(context, nrh)
|
|
78
80
|
new_data_elements = []
|
|
79
81
|
|
|
80
82
|
id_map.each_value do |elem_ids|
|
|
81
|
-
|
|
82
83
|
elem_id = elem_ids.first
|
|
83
84
|
data_element = data_elements.find { |de| de.id == elem_id }
|
|
85
|
+
# Keep the first element with a shared ID
|
|
86
|
+
new_data_elements << data_element
|
|
84
87
|
|
|
85
|
-
|
|
86
|
-
|
|
87
|
-
|
|
88
|
-
|
|
88
|
+
# Encounters require elements beyond id for uniqueness
|
|
89
|
+
next unless data_element._type == 'QDM::EncounterPerformed'
|
|
90
|
+
unique_element_keys = []
|
|
91
|
+
# Add key_elements_for_determining_encounter_uniqueness to array, this is used to determine if other
|
|
92
|
+
# elements with the same ID should be considered as unique
|
|
93
|
+
unique_element_keys << key_elements_for_determining_encounter_uniqueness(data_element)
|
|
89
94
|
|
|
90
|
-
|
|
95
|
+
# Loop through all other data elements with the same id
|
|
96
|
+
elem_ids[1,elem_ids.length].each do |dup_id|
|
|
97
|
+
dup_element = data_elements.find { |de| de.id == dup_id }
|
|
98
|
+
dup_element_keys = key_elements_for_determining_encounter_uniqueness(dup_element)
|
|
99
|
+
# See if a previously selected data element shared all of the keys files
|
|
100
|
+
# If all key fields match, move on.
|
|
101
|
+
next if unique_element_keys.include?(dup_element_keys)
|
|
102
|
+
# If all key fields don't match, keep element
|
|
103
|
+
new_data_elements << dup_element
|
|
104
|
+
# Add to list of unique element keys
|
|
105
|
+
unique_element_keys << dup_element_keys
|
|
106
|
+
end
|
|
91
107
|
end
|
|
92
108
|
|
|
93
109
|
patient.qdmPatient.dataElements << new_data_elements
|
|
94
110
|
entry_id_map.merge!(id_map)
|
|
111
|
+
warnings.concat(importer.warnings)
|
|
112
|
+
codes_modifiers.merge!(importer.codes_modifiers)
|
|
113
|
+
# reset warnings after they're captured so that the importer can be re-used
|
|
114
|
+
importer.warnings = []
|
|
115
|
+
importer.codes_modifiers = {}
|
|
95
116
|
end
|
|
96
117
|
end
|
|
97
118
|
|
|
119
|
+
def key_elements_for_determining_encounter_uniqueness(encounter)
|
|
120
|
+
codes = encounter.codes.collect { |dec| "#{dec.code}_#{dec.codeSystemOid}" }.sort.to_s
|
|
121
|
+
admission_date_time = encounter&.relevantPeriod&.low.to_s
|
|
122
|
+
discharge_date_time = encounter&.relevantPeriod&.high.to_s
|
|
123
|
+
"#{codes}#{admission_date_time}#{discharge_date_time}"
|
|
124
|
+
end
|
|
125
|
+
|
|
98
126
|
def get_patient_expired(record, doc)
|
|
99
127
|
entry_elements = doc.xpath("/cda:ClinicalDocument/cda:component/cda:structuredBody/cda:component/cda:section[cda:templateId/@root = '2.16.840.1.113883.10.20.24.2.1']/cda:entry/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.54']")
|
|
100
128
|
return unless entry_elements.empty?
|
|
@@ -117,12 +145,6 @@ module QRDA
|
|
|
117
145
|
end
|
|
118
146
|
end
|
|
119
147
|
end
|
|
120
|
-
|
|
121
|
-
private
|
|
122
|
-
|
|
123
|
-
def generate_importer(importer_class)
|
|
124
|
-
EntryPackage.new(importer_class.new)
|
|
125
|
-
end
|
|
126
148
|
end
|
|
127
149
|
end
|
|
128
150
|
end
|
metadata
CHANGED
|
@@ -1,14 +1,14 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: cqm-reports
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 2.0
|
|
4
|
+
version: 2.1.0
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- The MITRE Corporation
|
|
8
8
|
autorequire:
|
|
9
9
|
bindir: bin
|
|
10
10
|
cert_chain: []
|
|
11
|
-
date:
|
|
11
|
+
date: 2020-09-02 00:00:00.000000000 Z
|
|
12
12
|
dependencies:
|
|
13
13
|
- !ruby/object:Gem::Dependency
|
|
14
14
|
name: cqm-models
|
|
@@ -24,6 +24,20 @@ dependencies:
|
|
|
24
24
|
- - "~>"
|
|
25
25
|
- !ruby/object:Gem::Version
|
|
26
26
|
version: 2.0.0
|
|
27
|
+
- !ruby/object:Gem::Dependency
|
|
28
|
+
name: cqm-validators
|
|
29
|
+
requirement: !ruby/object:Gem::Requirement
|
|
30
|
+
requirements:
|
|
31
|
+
- - "~>"
|
|
32
|
+
- !ruby/object:Gem::Version
|
|
33
|
+
version: 2.0.0
|
|
34
|
+
type: :runtime
|
|
35
|
+
prerelease: false
|
|
36
|
+
version_requirements: !ruby/object:Gem::Requirement
|
|
37
|
+
requirements:
|
|
38
|
+
- - "~>"
|
|
39
|
+
- !ruby/object:Gem::Version
|
|
40
|
+
version: 2.0.0
|
|
27
41
|
- !ruby/object:Gem::Dependency
|
|
28
42
|
name: mustache
|
|
29
43
|
requirement: !ruby/object:Gem::Requirement
|
|
@@ -147,8 +161,6 @@ files:
|
|
|
147
161
|
- README.md
|
|
148
162
|
- Rakefile
|
|
149
163
|
- lib/cqm_report.rb
|
|
150
|
-
- lib/ext/code.rb
|
|
151
|
-
- lib/ext/data_element.rb
|
|
152
164
|
- lib/html-export/qdm-patient/_header_css.mustache
|
|
153
165
|
- lib/html-export/qdm-patient/_javascript.mustache
|
|
154
166
|
- lib/html-export/qdm-patient/data_element/_data_element.mustache
|
|
@@ -308,7 +320,6 @@ files:
|
|
|
308
320
|
- lib/qrda-import/data-element-importers/substance_recommended_importer.rb
|
|
309
321
|
- lib/qrda-import/data-element-importers/symptom_importer.rb
|
|
310
322
|
- lib/qrda-import/entry_finder.rb
|
|
311
|
-
- lib/qrda-import/entry_package.rb
|
|
312
323
|
- lib/qrda-import/narrative_reference_handler.rb
|
|
313
324
|
- lib/qrda-import/patient_importer.rb
|
|
314
325
|
- lib/util/code_system_helper.rb
|
|
@@ -338,7 +349,8 @@ required_rubygems_version: !ruby/object:Gem::Requirement
|
|
|
338
349
|
- !ruby/object:Gem::Version
|
|
339
350
|
version: '0'
|
|
340
351
|
requirements: []
|
|
341
|
-
|
|
352
|
+
rubyforge_project:
|
|
353
|
+
rubygems_version: 2.6.14
|
|
342
354
|
signing_key:
|
|
343
355
|
specification_version: 4
|
|
344
356
|
summary: A library for import and export of reports for use with electronic Clinical
|
data/lib/ext/code.rb
DELETED
data/lib/ext/data_element.rb
DELETED
|
@@ -1,24 +0,0 @@
|
|
|
1
|
-
module QDM
|
|
2
|
-
class DataElement
|
|
3
|
-
def merge!(other)
|
|
4
|
-
# ensure they're the same category (e.g. 'encounter')
|
|
5
|
-
return unless qdmCategory == other.qdmCategory
|
|
6
|
-
|
|
7
|
-
# ensure they're the same status (e.g. 'performed'), and that they both have a status set (or that they both don't)
|
|
8
|
-
return if respond_to?(:qdmStatus) && !other.respond_to?(:qdmStatus)
|
|
9
|
-
return if !respond_to?(:qdmStatus) && other.respond_to?(:qdmStatus)
|
|
10
|
-
return if respond_to?(:qdmStatus) && other.respond_to?(:qdmStatus) && qdmStatus != other.qdmStatus
|
|
11
|
-
|
|
12
|
-
# iterate over non-code fields
|
|
13
|
-
fields.each_key do |field|
|
|
14
|
-
next if field[0] == '_' || %w[dataElementCodes qdmCategory qdmVersion qdmStatus].include?(field)
|
|
15
|
-
|
|
16
|
-
if send(field).nil?
|
|
17
|
-
send(field + '=', other.send(field))
|
|
18
|
-
end
|
|
19
|
-
end
|
|
20
|
-
|
|
21
|
-
self.dataElementCodes = dataElementCodes.concat(other.dataElementCodes).uniq
|
|
22
|
-
end
|
|
23
|
-
end
|
|
24
|
-
end
|