cqm-parsers 0.2.3 → 3.1.0.0

metadata

@@ -1,43 +1,43 @@
 --- !ruby/object:Gem::Specification
 name: cqm-parsers
 version: !ruby/object:Gem::Version
-  version: 0.2.3
+  version: 3.1.0.0
 platform: ruby
 authors:
 - The MITRE Corporation
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2019-04-30 00:00:00.000000000 Z
+date: 2020-06-30 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
-  name: mustache
+  name: cqm-models
   requirement: !ruby/object:Gem::Requirement
     requirements:
-    - - ">="
+    - - "~>"
       - !ruby/object:Gem::Version
-        version: '0'
+        version: 3.0.0
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
-    - - ">="
+    - - "~>"
       - !ruby/object:Gem::Version
-        version: '0'
+        version: 3.0.0
 - !ruby/object:Gem::Dependency
-  name: rest-client
+  name: mustache
   requirement: !ruby/object:Gem::Requirement
     requirements:
-    - - "~>"
+    - - ">="
       - !ruby/object:Gem::Version
-        version: 2.0.1
+        version: '0'
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
-    - - "~>"
+    - - ">="
       - !ruby/object:Gem::Version
-        version: 2.0.1
+        version: '0'
 - !ruby/object:Gem::Dependency
   name: erubis
   requirement: !ruby/object:Gem::Requirement
@@ -58,56 +58,56 @@ dependencies:
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: 5.0.0
+        version: '6.4'
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: 5.0.0
+        version: '6.4'
 - !ruby/object:Gem::Dependency
   name: mongoid-tree
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: 2.0.0
+        version: '2.1'
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: 2.0.0
+        version: '2.1'
 - !ruby/object:Gem::Dependency
   name: activesupport
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: 4.2.0
+        version: '5.0'
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: 4.2.0
+        version: '5.0'
 - !ruby/object:Gem::Dependency
-  name: protected_attributes
+  name: protected_attributes_continued
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: 1.0.5
+        version: 1.4.0
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: 1.0.5
+        version: 1.4.0
 - !ruby/object:Gem::Dependency
   name: uuid
   requirement: !ruby/object:Gem::Requirement
@@ -140,16 +140,22 @@ dependencies:
   name: nokogiri
   requirement: !ruby/object:Gem::Requirement
     requirements:
-    - - "~>"
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: 1.8.5
+    - - "<"
       - !ruby/object:Gem::Version
-        version: 1.10.3
+        version: 1.11.0
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
-    - - "~>"
+    - - ">="
       - !ruby/object:Gem::Version
-        version: 1.10.3
+        version: 1.8.5
+    - - "<"
+      - !ruby/object:Gem::Version
+        version: 1.11.0
 - !ruby/object:Gem::Dependency
   name: highline
   requirement: !ruby/object:Gem::Requirement
@@ -170,14 +176,28 @@ dependencies:
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: 1.2.2
+        version: '1.3'
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: 1.2.2
+        version: '1.3'
+- !ruby/object:Gem::Dependency
+  name: typhoeus
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
 - !ruby/object:Gem::Dependency
   name: zip-zip
   requirement: !ruby/object:Gem::Requirement
@@ -229,7 +249,7 @@ files:
 - Gemfile
 - README.md
 - Rakefile
-- lib/ext/code.rb
+- lib/cqm-parsers.rb
 - lib/ext/data_element.rb
 - lib/hqmf-model/attribute.rb
 - lib/hqmf-model/data_criteria.json
@@ -239,7 +259,6 @@ files:
 - lib/hqmf-model/precondition.rb
 - lib/hqmf-model/types.rb
 - lib/hqmf-model/utilities.rb
-- lib/hqmf-parser.rb
 - lib/hqmf-parser/1.0/attribute.rb
 - lib/hqmf-parser/1.0/comparison.rb
 - lib/hqmf-parser/1.0/data_criteria.rb
@@ -286,103 +305,16 @@ files:
 - lib/hqmf-parser/cql/document_helpers/doc_population_helper.rb
 - lib/hqmf-parser/cql/value_set_helper.rb
 - lib/hqmf-parser/parser.rb
-- lib/qrda-export/catI-r5/_code.mustache
-- lib/qrda-export/catI-r5/_codes.mustache
-- lib/qrda-export/catI-r5/_header.mustache
-- lib/qrda-export/catI-r5/_measure_section.mustache
-- lib/qrda-export/catI-r5/_reporting_period.mustache
-- lib/qrda-export/catI-r5/_values.mustache
-- lib/qrda-export/catI-r5/qrda1_r5.mustache
-- lib/qrda-export/catI-r5/qrda1_r5.rb
-- lib/qrda-export/catI-r5/qrda_header/_author.mustache
-- lib/qrda-export/catI-r5/qrda_header/_custodian.mustache
-- lib/qrda-export/catI-r5/qrda_header/_documentation_of_service_event.mustache
-- lib/qrda-export/catI-r5/qrda_header/_information_recipient.mustache
-- lib/qrda-export/catI-r5/qrda_header/_legal_authenticator.mustache
-- lib/qrda-export/catI-r5/qrda_header/_participant.mustache
-- lib/qrda-export/catI-r5/qrda_header/_record_target.mustache
-- lib/qrda-export/catI-r5/qrda_templates/adverse_event.mustache
-- lib/qrda-export/catI-r5/qrda_templates/allergy_intolerance.mustache
-- lib/qrda-export/catI-r5/qrda_templates/assessment_performed.mustache
-- lib/qrda-export/catI-r5/qrda_templates/communication_from_patient_to_provider.mustache
-- lib/qrda-export/catI-r5/qrda_templates/communication_from_provider_to_patient.mustache
-- lib/qrda-export/catI-r5/qrda_templates/communication_from_provider_to_provider.mustache
-- lib/qrda-export/catI-r5/qrda_templates/device_applied.mustache
-- lib/qrda-export/catI-r5/qrda_templates/device_ordered.mustache
-- lib/qrda-export/catI-r5/qrda_templates/diagnosis.mustache
-- lib/qrda-export/catI-r5/qrda_templates/diagnostic_study_ordered.mustache
-- lib/qrda-export/catI-r5/qrda_templates/diagnostic_study_performed.mustache
-- lib/qrda-export/catI-r5/qrda_templates/encounter_ordered.mustache
-- lib/qrda-export/catI-r5/qrda_templates/encounter_performed.mustache
-- lib/qrda-export/catI-r5/qrda_templates/immunization_administered.mustache
-- lib/qrda-export/catI-r5/qrda_templates/insurance_provider.mustache
-- lib/qrda-export/catI-r5/qrda_templates/intervention_ordered.mustache
-- lib/qrda-export/catI-r5/qrda_templates/intervention_performed.mustache
-- lib/qrda-export/catI-r5/qrda_templates/lab_test_ordered.mustache
-- lib/qrda-export/catI-r5/qrda_templates/lab_test_performed.mustache
-- lib/qrda-export/catI-r5/qrda_templates/medication_active.mustache
-- lib/qrda-export/catI-r5/qrda_templates/medication_administered.mustache
-- lib/qrda-export/catI-r5/qrda_templates/medication_discharge.mustache
-- lib/qrda-export/catI-r5/qrda_templates/medication_dispensed.mustache
-- lib/qrda-export/catI-r5/qrda_templates/medication_ordered.mustache
-- lib/qrda-export/catI-r5/qrda_templates/patient_characteristic_expired.mustache
-- lib/qrda-export/catI-r5/qrda_templates/physical_exam_performed.mustache
-- lib/qrda-export/catI-r5/qrda_templates/procedure_ordered.mustache
-- lib/qrda-export/catI-r5/qrda_templates/procedure_performed.mustache
-- lib/qrda-export/catI-r5/qrda_templates/template_partials/_admission_source.mustache
-- lib/qrda-export/catI-r5/qrda_templates/template_partials/_anatomical_location_site.mustache
-- lib/qrda-export/catI-r5/qrda_templates/template_partials/_author.mustache
-- lib/qrda-export/catI-r5/qrda_templates/template_partials/_author_participation.mustache
-- lib/qrda-export/catI-r5/qrda_templates/template_partials/_component.mustache
-- lib/qrda-export/catI-r5/qrda_templates/template_partials/_encounter_diagnosis.mustache
-- lib/qrda-export/catI-r5/qrda_templates/template_partials/_encounter_facility_location.mustache
-- lib/qrda-export/catI-r5/qrda_templates/template_partials/_mediation_frequency.mustache
-- lib/qrda-export/catI-r5/qrda_templates/template_partials/_medication_details.mustache
-- lib/qrda-export/catI-r5/qrda_templates/template_partials/_ordinality.mustache
-- lib/qrda-export/catI-r5/qrda_templates/template_partials/_principal_diagnosis.mustache
-- lib/qrda-export/catI-r5/qrda_templates/template_partials/_reason.mustache
-- lib/qrda-export/catI-r5/qrda_templates/template_partials/_related_to.mustache
-- lib/qrda-export/catI-r5/qrda_templates/template_partials/_results.mustache
-- lib/qrda-export/catI-r5/qrda_templates/template_partials/_severity.mustache
-- lib/qrda-export/helper/cat_1_view_helper.rb
-- lib/qrda-export/helper/code_system_helper.rb
-- lib/qrda-export/helper/date_helper.rb
-- lib/qrda-import/base-importers/demographics_importer.rb
-- lib/qrda-import/base-importers/medication_importer.rb
-- lib/qrda-import/base-importers/section_importer.rb
-- lib/qrda-import/cda_identifier.rb
-- lib/qrda-import/data-element-importers/adverse_event_importer.rb
-- lib/qrda-import/data-element-importers/allergy_intolerance_importer.rb
-- lib/qrda-import/data-element-importers/assessment_performed_importer.rb
-- lib/qrda-import/data-element-importers/communication_from_patient_to_provider_importer.rb
-- lib/qrda-import/data-element-importers/communication_from_provider_to_patient_importer.rb
-- lib/qrda-import/data-element-importers/communication_from_provider_to_provider_importer.rb
-- lib/qrda-import/data-element-importers/device_applied_importer.rb
-- lib/qrda-import/data-element-importers/device_order_importer.rb
-- lib/qrda-import/data-element-importers/diagnosis_importer.rb
-- lib/qrda-import/data-element-importers/diagnostic_study_order_importer.rb
-- lib/qrda-import/data-element-importers/diagnostic_study_performed_importer.rb
-- lib/qrda-import/data-element-importers/encounter_order_importer.rb
-- lib/qrda-import/data-element-importers/encounter_performed_importer.rb
-- lib/qrda-import/data-element-importers/immunization_administered_importer.rb
-- lib/qrda-import/data-element-importers/intervention_order_importer.rb
-- lib/qrda-import/data-element-importers/intervention_performed_importer.rb
-- lib/qrda-import/data-element-importers/laboratory_test_order_importer.rb
-- lib/qrda-import/data-element-importers/laboratory_test_performed_importer.rb
-- lib/qrda-import/data-element-importers/medication_active_importer.rb
-- lib/qrda-import/data-element-importers/medication_administered_importer.rb
-- lib/qrda-import/data-element-importers/medication_discharge_importer.rb
-- lib/qrda-import/data-element-importers/medication_dispensed_importer.rb
-- lib/qrda-import/data-element-importers/medication_order_importer.rb
-- lib/qrda-import/data-element-importers/patient_characteristic_expired.rb
-- lib/qrda-import/data-element-importers/physical_exam_performed_importer.rb
-- lib/qrda-import/data-element-importers/procedure_order_importer.rb
-- lib/qrda-import/data-element-importers/procedure_performed_importer.rb
-- lib/qrda-import/data-element-importers/substance_administered_importer.rb
-- lib/qrda-import/entry_finder.rb
-- lib/qrda-import/entry_package.rb
-- lib/qrda-import/narrative_reference_handler.rb
-- lib/qrda-import/patient_importer.rb
+- lib/measure-loader/cql_loader.rb
+- lib/measure-loader/elm_dependency_finder.rb
+- lib/measure-loader/elm_parser.rb
+- lib/measure-loader/exceptions.rb
+- lib/measure-loader/helpers.rb
+- lib/measure-loader/hqmf_measure_loader.rb
+- lib/measure-loader/mat_measure_files.rb
+- lib/measure-loader/source_data_criteria_loader.rb
+- lib/measure-loader/value_set_helpers.rb
+- lib/measure-loader/vsac_value_set_loader.rb
 - lib/tasks/hqmf.rake
 - lib/util/code_system_helper.rb
 - lib/util/counter.rb
@@ -390,6 +322,7 @@ files:
 - lib/util/hqmf_template_oid_map.json
 - lib/util/hqmfr2_template_oid_map.json
 - lib/util/hqmfr2cql_template_oid_map.json
+- lib/util/util.rb
 - lib/util/vsac_api.rb
 homepage: https://github.com/projecttacoma/cqm-parsers
 licenses:
@@ -411,7 +344,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
       version: '0'
 requirements: []
 rubyforge_project: 
-rubygems_version: 2.7.9
+rubygems_version: 2.6.14
 signing_key: 
 specification_version: 4
 summary: A library for parsing HQMF documents.

data/lib/ext/code.rb

@@ -1,10 +0,0 @@
-module QDM
-  class Code    
-    def ==(other)
-      return false unless other.is_a? QDM::Code
-      (code == other.code) && (codeSystem == other.codeSystem) && (codeSystemOid == other.codeSystemOid) && (version == other.version)
-    end
-
-    alias eql? ==
-  end
-end

data/lib/qrda-export/catI-r5/_code.mustache

@@ -1 +0,0 @@
-{{{code_and_codesystem}}}

data/lib/qrda-export/catI-r5/_codes.mustache

@@ -1,10 +0,0 @@
-{{#multiple_codes?}}
-  <code {{{primary_code_and_codesystem}}}>
-  {{{translation_codes_and_codesystem_list}}}
-  </code>
-{{/multiple_codes?}}
-{{^multiple_codes?}}
-  {{#dataElementCodes}}
-  <code {{> _code}}/>
-  {{/dataElementCodes}}
-{{/multiple_codes?}}

data/lib/qrda-export/catI-r5/_header.mustache

@@ -1,28 +0,0 @@
-<!-- QRDA Header -->
-<realmCode code="US"/>
-<typeId root="2.16.840.1.113883.1.3" extension="POCD_HD000040"/>
-<!-- US Realm Header Template Id -->
-<templateId root="2.16.840.1.113883.10.20.22.1.1" extension="2015-08-01"/>
-<!-- QRDA templateId -->
-<templateId root="2.16.840.1.113883.10.20.24.1.1" extension="2017-08-01"/>
-<!-- QDM-based QRDA templateId -->
-<templateId root="2.16.840.1.113883.10.20.24.1.2" extension="2017-08-01"/>
-<!-- CMS QRDA templateId -->
-<templateId root="2.16.840.1.113883.10.20.24.1.3" extension="2018-02-01"/>
-<!-- This is the globally unique identifier for this QRDA document -->
-<id root="{{random_id}}"/>
-<!-- QRDA document type code -->
-<code code="55182-0" codeSystem="2.16.840.1.113883.6.1" codeSystemName="LOINC" displayName="Quality Measure Report"/>
-<title>QRDA Incidence Report</title>
-<!-- This is the document creation time -->
-<effectiveTime value="{{{current_time}}}"/>
-<confidentialityCode code="N" codeSystem="2.16.840.1.113883.5.25"/>
-<languageCode code="en"/>
-<!-- reported patient -->
-{{> qrda_header/_record_target}}
-{{> qrda_header/_author}}
-{{> qrda_header/_custodian}}
-{{> qrda_header/_information_recipient}}
-{{> qrda_header/_legal_authenticator}}
-{{> qrda_header/_participant}}
-{{> qrda_header/_documentation_of_service_event}}

data/lib/qrda-export/catI-r5/_measure_section.mustache

@@ -1,59 +0,0 @@
-<component>
-  <section>
-    <!-- 
-      *****************************************************************
-      Measure Section
-      *****************************************************************
-    -->
-    <!-- This is the templateId for Measure Section -->
-    <templateId root="2.16.840.1.113883.10.20.24.2.2"/>
-    <!-- This is the templateId for Measure Section QDM -->
-    <templateId root="2.16.840.1.113883.10.20.24.2.3"/>
-    <!-- This is the LOINC code for "Measure document". This stays the same for all measure section required by QRDA standard -->
-    <code code="55186-1" codeSystem="2.16.840.1.113883.6.1"/>
-    <title>Measure Section</title>
-    <text>
-      <table border="1" width="100%">
-        <thead>
-          <tr>
-            <th>eMeasure Title</th>
-            <th>Version specific identifier</th>
-          </tr>
-        </thead>
-        <tbody>
-          {{#measures}}
-          <tr>
-            <td>{{description}}</td>
-            <td>{{hqmf_id}}</td>
-            <td/>
-          </tr>
-          {{/measures}}
-        </tbody>
-      </table>
-    </text>
-    <!-- 1..* Organizers, each containing a reference to an eMeasure -->
-    {{#measures}}
-    <entry>
-      <organizer classCode="CLUSTER" moodCode="EVN">
-        <!-- This is the templateId for Measure Reference -->
-        <templateId root="2.16.840.1.113883.10.20.24.3.98"/>
-        <!-- This is the templateId for eMeasure Reference QDM -->
-        <templateId root="2.16.840.1.113883.10.20.24.3.97"/>
-        <id extension="{{random_id}}" root="1.3.6.1.4.1.115"/>
-        <statusCode code="completed"/>
-        <!-- Containing isBranch external references -->
-        <reference typeCode="REFR">
-          <externalDocument classCode="DOC" moodCode="EVN">
-            <!-- SHALL: This is the version specific identifier for eMeasure: QualityMeasureDocument/id it is a GUID-->
-            <id extension="{{hqmf_id}}" root="2.16.840.1.113883.4.738"/>
-            <!-- SHOULD This is the title of the eMeasure -->
-            <text>{{description}}</text>
-            <!-- SHOULD: setId is the eMeasure version neutral id  -->
-            <setId root="{{hqmf_set_id}}"/>
-          </externalDocument>
-        </reference>
-      </organizer>
-    </entry>
-    {{/measures}}
-  </section>
-</component>

data/lib/qrda-export/catI-r5/_reporting_period.mustache

@@ -1,23 +0,0 @@
-<component>
-  <section>
-    <!-- This is the templateId for Reporting Parameters section -->
-    <templateId root="2.16.840.1.113883.10.20.17.2.1"/>
-    <templateId extension="2016-03-01" root="2.16.840.1.113883.10.20.17.2.1.1"/>
-    <code code="55187-9" codeSystem="2.16.840.1.113883.6.1"/>
-    <title>Reporting Parameters</title>
-    <text></text>
-    <entry typeCode="DRIV">
-      <act classCode="ACT" moodCode="EVN">
-        <!-- This is the templateId for Reporting Parameteres Act -->
-        <templateId root="2.16.840.1.113883.10.20.17.3.8"/>
-        <templateId extension="2016-03-01" root="2.16.840.1.113883.10.20.17.3.8.1"/>
-        <id extension="{{random_id}}" root="1.3.6.1.4.1.115"/>
-        <code code="252116004" codeSystem="2.16.840.1.113883.6.96" displayName="Observation Parameters"/>
-        <effectiveTime>
-          <low value="{{{performance_period_start}}}"/>
-          <high value="{{{performance_period_end}}}"/>
-        </effectiveTime>
-      </act>
-    </entry>
-  </section>
-</component>