cqm-parsers 0.2.2 → 3.0.0.0

data/lib/qrda-import/data-element-importers/adverse_event_importer.rb

@@ -1,24 +0,0 @@
-module QRDA
-  module Cat1
-    class AdverseEventImporter < SectionImporter
-      def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.146']"))
-        super(entry_finder)
-        @id_xpath = './cda:id'
-        @code_xpath = './cda:entryRelationship/cda:observation/cda:value'
-        @author_datetime_xpath = './cda:author/cda:time'
-        @relevant_period_xpath = './cda:effectiveTime'
-        @severity_xpath = "./cda:entryRelationship/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.22.4.8']/cda:value"
-        @facility_xpath = "./cda:participant[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.100']"
-        @entry_class = QDM::AdverseEvent
-      end
-
-      def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
-        adverse_event = super
-        adverse_event.severity = code_if_present(entry_element.at_xpath(@severity_xpath))
-        extract_facility(entry_element, adverse_event)
-        adverse_event
-      end
-
-    end
-  end
-end

data/lib/qrda-import/data-element-importers/allergy_intolerance_importer.rb

@@ -1,22 +0,0 @@
-module QRDA
-  module Cat1
-    class AllergyIntoleranceImporter < SectionImporter
-      def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.147']"))
-        super(entry_finder)
-        @id_xpath = './cda:id'
-        @code_xpath = './cda:participant/cda:participantRole/cda:playingEntity/cda:code'
-        @author_datetime_xpath = "./cda:author/cda:time"
-        @prevalence_period_xpath = "./cda:effectiveTime"
-        @severity_xpath = "./cda:entryRelationship/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.22.4.8']/cda:value"
-        @entry_class = QDM::AllergyIntolerance
-      end
-
-      def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
-        allergy_intolerance = super
-        allergy_intolerance.severity = code_if_present(entry_element.at_xpath(@severity_xpath))
-        allergy_intolerance
-      end
-
-    end
-  end
-end

data/lib/qrda-import/data-element-importers/assessment_performed_importer.rb

@@ -1,24 +0,0 @@
-module QRDA
-  module Cat1
-    class AssessmentPerformedImporter < SectionImporter
-      def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.144']"))
-        super(entry_finder)
-        @id_xpath = './cda:id'
-        @code_xpath = './cda:code'
-        @author_datetime_xpath = "./cda:author/cda:time"
-        @result_xpath = "./cda:value"
-        @method_xpath = './cda:methodCode'
-        @components_xpath = "./cda:entryRelationship/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.149']"
-        @entry_class = QDM::AssessmentPerformed
-      end
-
-      def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
-        assessment_performed = super
-        assessment_performed.method = code_if_present(entry_element.at_xpath(@method_xpath))
-        assessment_performed.components = extract_components(entry_element)
-        assessment_performed
-      end
-
-    end
-  end
-end

data/lib/qrda-import/data-element-importers/communication_from_patient_to_provider_importer.rb

@@ -1,19 +0,0 @@
-module QRDA
-  module Cat1
-    class CommunicationFromPatientToProviderImporter < SectionImporter
-      def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:act[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.2']"))
-        super(entry_finder)
-        @id_xpath = './cda:id'
-        @code_xpath = './cda:code'
-        @author_datetime_xpath = "./cda:author/cda:time"
-        @entry_class = QDM::CommunicationFromPatientToProvider
-      end
-
-      def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
-        communication_from_patient_to_provider = super
-        communication_from_patient_to_provider
-      end
-
-    end
-  end
-end

data/lib/qrda-import/data-element-importers/communication_from_provider_to_patient_importer.rb

@@ -1,19 +0,0 @@
-module QRDA
-  module Cat1
-    class CommunicationFromProviderToPatientImporter < SectionImporter
-      def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:act[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.3']"))
-        super(entry_finder)
-        @id_xpath = './cda:id'
-        @code_xpath = './cda:code'
-        @author_datetime_xpath = "./cda:author/cda:time"
-        @entry_class = QDM::CommunicationFromProviderToPatient
-      end
-
-      def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
-        communication_from_provider_to_patient = super
-        communication_from_provider_to_patient
-      end
-
-    end
-  end
-end

data/lib/qrda-import/data-element-importers/communication_from_provider_to_provider_importer.rb

@@ -1,21 +0,0 @@
-module QRDA
-  module Cat1
-    class CommunicationFromProviderToProviderImporter < SectionImporter
-      def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:act[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.4']"))
-        super(entry_finder)
-        @id_xpath = './cda:id'
-        @code_xpath = './cda:code'
-        @author_datetime_xpath = "./cda:author/cda:time"
-        @related_to_xpath = "./sdtc:inFulfillmentOf1/sdtc:actReference"
-        @entry_class = QDM::CommunicationFromProviderToProvider
-      end
-
-      def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
-        communication_from_provider_to_provider = super
-        communication_from_provider_to_provider.relatedTo = extract_related_to(entry_element)
-        communication_from_provider_to_provider
-      end
-
-    end
-  end
-end

data/lib/qrda-import/data-element-importers/device_applied_importer.rb

@@ -1,24 +0,0 @@
-module QRDA
-  module Cat1
-    class DeviceAppliedImporter < SectionImporter
-      def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:procedure[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.7']"))
-        super(entry_finder)
-        @id_xpath = './cda:id'
-        @code_xpath = './cda:participant/cda:participantRole/cda:playingDevice/cda:code'
-        @author_datetime_xpath = "./cda:author/cda:time"
-        @relevant_period_xpath = "./cda:effectiveTime"
-        @anatomical_location_site_xpath = "./cda:targetSiteCode"
-        @anatomical_approach_site_xpath = "./cda:approachSiteCode"
-        @entry_class = QDM::DeviceApplied
-      end
-
-      def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
-        device_applied = super
-        device_applied.anatomicalLocationSite = code_if_present(entry_element.at_xpath(@anatomical_location_site_xpath))
-        device_applied.anatomicalApproachSite = code_if_present(entry_element.at_xpath(@anatomical_approach_site_xpath))
-        device_applied
-      end
-
-    end
-  end
-end

data/lib/qrda-import/data-element-importers/device_order_importer.rb

@@ -1,19 +0,0 @@
-module QRDA
-  module Cat1
-    class DeviceOrderImporter < SectionImporter
-      def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:act[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.130']"))
-        super(entry_finder)
-        @id_xpath = './cda:entryRelationship/cda:supply/cda:id'
-        @code_xpath = "./cda:entryRelationship/cda:supply[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.9']/cda:participant/cda:participantRole/cda:playingDevice/cda:code"
-        @author_datetime_xpath = "./cda:entryRelationship/cda:supply[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.9']/cda:author/cda:time"
-        @entry_class = QDM::DeviceOrder
-      end
-
-      def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
-        device_order = super
-        device_order
-      end
-
-    end
-  end
-end

data/lib/qrda-import/data-element-importers/diagnosis_importer.rb

@@ -1,24 +0,0 @@
-module QRDA
-  module Cat1
-    class DiagnosisImporter < SectionImporter
-      def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:act[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.137']"))
-        super(entry_finder)
-        @id_xpath = './cda:entryRelationship/cda:observation/cda:id'
-        @code_xpath = "./cda:entryRelationship/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.135']/cda:value"
-        @author_datetime_xpath = "./cda:author/cda:time"
-        @prevalence_period_xpath = "./cda:entryRelationship/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.135']/cda:effectiveTime"
-        @anatomical_location_site_xpath = "./cda:entryRelationship/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.135']/cda:targetSiteCode"
-        @severity_xpath = "./cda:entryRelationship/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.135']/cda:entryRelationship/cda:observation[cda:templateId/@root='2.16.840.1.113883.10.20.22.4.8']/cda:value"
-        @entry_class = QDM::Diagnosis
-      end
-
-      def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
-        diagnosis = super
-        diagnosis.anatomicalLocationSite = code_if_present(entry_element.at_xpath(@anatomical_location_site_xpath))
-        diagnosis.severity = code_if_present(entry_element.at_xpath(@severity_xpath))
-        diagnosis
-      end
-
-    end
-  end
-end

data/lib/qrda-import/data-element-importers/diagnostic_study_order_importer.rb

@@ -1,21 +0,0 @@
-module QRDA
-  module Cat1
-    class DiagnosticStudyOrderImporter < SectionImporter
-      def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.17']"))
-        super(entry_finder)
-        @id_xpath = './cda:id'
-        @code_xpath = './cda:code'
-        @author_datetime_xpath = "./cda:author/cda:time"
-        @method_xpath = './cda:methodCode'
-        @entry_class = QDM::DiagnosticStudyOrder
-      end
-
-      def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
-        diagnostic_study_order = super
-        diagnostic_study_order.method = code_if_present(entry_element.at_xpath(@method_xpath))
-        diagnostic_study_order
-      end
-
-    end
-  end
-end

data/lib/qrda-import/data-element-importers/diagnostic_study_performed_importer.rb

@@ -1,31 +0,0 @@
-module QRDA
-  module Cat1
-    class DiagnosticStudyPerformedImporter < SectionImporter
-      def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.18']"))
-        super(entry_finder)
-        @id_xpath = './cda:id'
-        @code_xpath = './cda:code'
-        @relevant_period_xpath = "./cda:effectiveTime"
-        @author_datetime_xpath = "./cda:author/cda:time"
-        @result_xpath = "./cda:entryRelationship[@typeCode='REFR']/cda:observation/cda:value"
-        @result_datetime_xpath = "./cda:entryRelationship[@typeCode='REFR']/cda:observation/cda:effectiveTime"
-        @status_xpath = "./cda:entryRelationship/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.93']/cda:value"
-        @method_xpath = './cda:methodCode'
-        @facility_location_xpath = "./cda:participant[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.100']/cda:participantRole[@classCode='SDLOC']/cda:code"
-        @components_xpath = "./cda:entryRelationship/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.149']"
-        @entry_class = QDM::DiagnosticStudyPerformed
-      end
-
-      def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
-        diagnostic_study_performed = super
-        diagnostic_study_performed.resultDatetime = extract_time(entry_element, @result_datetime_xpath)
-        diagnostic_study_performed.status = code_if_present(entry_element.at_xpath(@status_xpath))
-        diagnostic_study_performed.method = code_if_present(entry_element.at_xpath(@method_xpath))
-        diagnostic_study_performed.facilityLocation = code_if_present(entry_element.at_xpath(@facility_location_xpath))
-        diagnostic_study_performed.components = extract_components(entry_element)
-        diagnostic_study_performed
-      end
-
-    end
-  end
-end

data/lib/qrda-import/data-element-importers/encounter_order_importer.rb

@@ -1,21 +0,0 @@
-module QRDA
-  module Cat1
-    class EncounterOrderImporter < SectionImporter
-      def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:act[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.132']"))
-        super(entry_finder)
-        @id_xpath = './cda:entryRelationship/cda:encounter/cda:id'
-        @code_xpath = "./cda:entryRelationship/cda:encounter[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.22']/cda:code"
-        @author_datetime_xpath = "./cda:entryRelationship/cda:encounter[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.22']/cda:author/cda:time"
-        @facility_location_xpath = "./cda:entryRelationship/cda:encounter[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.22']/cda:participant[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.100']/cda:participantRole[@classCode='SDLOC']/cda:code"
-        @entry_class = QDM::EncounterOrder
-      end
-
-      def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
-        encounter_order = super
-        encounter_order.facilityLocation = code_if_present(entry_element.at_xpath(@facility_location_xpath))
-        encounter_order
-      end
-
-    end
-  end
-end

data/lib/qrda-import/data-element-importers/encounter_performed_importer.rb

@@ -1,42 +0,0 @@
-module QRDA
-  module Cat1
-    class EncounterPerformedImporter < SectionImporter
-      def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:act[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.133']"))
-        super(entry_finder)
-        @id_xpath = './cda:entryRelationship/cda:encounter/cda:id'
-        @code_xpath = "./cda:entryRelationship/cda:encounter[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.23']/cda:code"
-        @relevant_period_xpath = "./cda:entryRelationship/cda:encounter[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.23']/cda:effectiveTime"
-        @author_datetime_xpath = "./cda:entryRelationship/cda:encounter[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.23']/cda:author/cda:time"
-        @admission_source_xpath = "./cda:entryRelationship/cda:encounter[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.23']/cda:participant/cda:participantRole[cda:templateId/@root='2.16.840.1.113883.10.20.24.3.151']/cda:code"
-        @discharge_disposition_xpath = "./cda:entryRelationship/cda:encounter[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.23']/sdtc:dischargeDispositionCode"
-        @facility_xpath = "./cda:entryRelationship/cda:encounter/cda:participant[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.100']"
-        @principal_diagnosis_xpath = "./cda:entryRelationship/cda:encounter[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.23']/cda:entryRelationship/cda:observation[cda:code/@code='8319008']/cda:value"
-        @diagnosis_xpath = "./cda:entryRelationship/cda:encounter[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.23']/cda:entryRelationship/cda:act/cda:entryRelationship/cda:observation[cda:templateId/@root='2.16.840.1.113883.10.20.22.4.4']"
-        @entry_class = QDM::EncounterPerformed
-      end
-
-      def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
-        encounter_performed = super
-        encounter_performed.admissionSource = code_if_present(entry_element.at_xpath(@admission_source_xpath))
-        encounter_performed.dischargeDisposition = code_if_present(entry_element.at_xpath(@discharge_disposition_xpath))
-        extract_facility(entry_element, encounter_performed)
-        encounter_performed.principalDiagnosis = code_if_present(entry_element.at_xpath(@principal_diagnosis_xpath))
-        encounter_performed.diagnoses = extract_diagnoses(entry_element)
-        encounter_performed
-      end
-
-      private
-
-      def extract_diagnoses(parent_element)
-        diagnosis_elements = parent_element.xpath(@diagnosis_xpath)
-        diagnosis_list = []
-        diagnosis_elements.each do |diagnosis_element|
-          diagnosis_value = diagnosis_element.at_xpath("./cda:value")
-          diagnosis_list << code_if_present(diagnosis_value)
-        end
-        diagnosis_list.empty? ? nil : diagnosis_list
-      end
-
-    end
-  end
-end

data/lib/qrda-import/data-element-importers/immunization_administered_importer.rb

@@ -1,18 +0,0 @@
-module QRDA
-  module Cat1
-    class ImmunizationAdministeredImporter < MedicationImporter
-      def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:substanceAdministration[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.140']"))
-        super(entry_finder)
-        @relevant_period_xpath = nil
-        @author_datetime_xpath = "./cda:effectiveTime"
-        @entry_class = QDM::ImmunizationAdministered
-      end
-
-      def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
-        immunization_administered = super
-        immunization_administered
-      end
-
-    end
-  end
-end

data/lib/qrda-import/data-element-importers/intervention_order_importer.rb

@@ -1,19 +0,0 @@
-module QRDA
-  module Cat1
-    class InterventionOrderImporter < SectionImporter
-      def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:act[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.31']"))
-        super(entry_finder)
-        @id_xpath = './cda:id'
-        @code_xpath = './cda:code'
-        @author_datetime_xpath = "./cda:author/cda:time"
-        @entry_class = QDM::InterventionOrder
-      end
-
-      def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
-        intervention_order = super
-        intervention_order
-      end
-
-    end
-  end
-end

data/lib/qrda-import/data-element-importers/intervention_performed_importer.rb

@@ -1,23 +0,0 @@
-module QRDA
-  module Cat1
-    class InterventionPerformedImporter < SectionImporter
-      def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:act[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.32']"))
-        super(entry_finder)
-        @id_xpath = './cda:id'
-        @code_xpath = './cda:code'
-        @relevant_period_xpath = "./cda:effectiveTime"
-        @author_datetime_xpath = "./cda:author/cda:time"
-        @result_xpath = "./cda:entryRelationship[@typeCode='REFR']/cda:observation/cda:value"
-        @status_xpath = "./cda:entryRelationship/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.93']/cda:value"
-        @entry_class = QDM::InterventionPerformed
-      end
-
-      def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
-        intervention_performed = super
-        intervention_performed.status = code_if_present(entry_element.at_xpath(@status_xpath))
-        intervention_performed
-      end
-
-    end
-  end
-end

data/lib/qrda-import/data-element-importers/laboratory_test_order_importer.rb

@@ -1,21 +0,0 @@
-module QRDA
-  module Cat1
-    class LaboratoryTestOrderImporter < SectionImporter
-      def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.37']"))
-        super(entry_finder)
-        @id_xpath = './cda:id'
-        @code_xpath = './cda:code'
-        @author_datetime_xpath = "./cda:author/cda:time"
-        @method_xpath = './cda:methodCode'
-        @entry_class = QDM::LaboratoryTestOrder
-      end
-
-      def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
-        laboratory_test_order = super
-        laboratory_test_order.method = code_if_present(entry_element.at_xpath(@method_xpath))
-        laboratory_test_order
-      end
-
-    end
-  end
-end

data/lib/qrda-import/data-element-importers/laboratory_test_performed_importer.rb

@@ -1,29 +0,0 @@
-module QRDA
-  module Cat1
-    class LaboratoryTestPerformedImporter < SectionImporter
-      def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.38']"))
-        super(entry_finder)
-        @id_xpath = './cda:id'
-        @code_xpath = './cda:code'
-        @relevant_period_xpath = "./cda:effectiveTime"
-        @author_datetime_xpath = "./cda:author/cda:time"
-        @status_xpath = "./cda:entryRelationship/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.93']/cda:value"
-        @method_xpath = './cda:methodCode'
-        @result_xpath = "./cda:entryRelationship[@typeCode='REFR']/cda:observation/cda:value"
-        @result_datetime_xpath = "./cda:entryRelationship[@typeCode='REFR']/cda:observation/cda:effectiveTime"
-        @components_xpath = "./cda:entryRelationship/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.149']"
-        @entry_class = QDM::LaboratoryTestPerformed
-      end
-
-      def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
-        laboratory_test_performed = super
-        laboratory_test_performed.status = code_if_present(entry_element.at_xpath(@status_xpath))
-        laboratory_test_performed.method = code_if_present(entry_element.at_xpath(@method_xpath))
-        laboratory_test_performed.resultDatetime = extract_time(entry_element, @result_datetime_xpath)
-        laboratory_test_performed.components = extract_components(entry_element)
-        laboratory_test_performed
-      end
-
-    end
-  end
-end