cqm-parsers 0.1.0
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- checksums.yaml +7 -0
- data/Gemfile +29 -0
- data/README.md +21 -0
- data/Rakefile +19 -0
- data/lib/ext/code.rb +10 -0
- data/lib/ext/data_element.rb +24 -0
- data/lib/hqmf-model/attribute.rb +63 -0
- data/lib/hqmf-model/data_criteria.rb +467 -0
- data/lib/hqmf-model/document.rb +253 -0
- data/lib/hqmf-model/population_criteria.rb +102 -0
- data/lib/hqmf-model/precondition.rb +94 -0
- data/lib/hqmf-model/types.rb +457 -0
- data/lib/hqmf-model/utilities.rb +52 -0
- data/lib/hqmf-parser.rb +116 -0
- data/lib/hqmf-parser/1.0/attribute.rb +121 -0
- data/lib/hqmf-parser/1.0/comparison.rb +34 -0
- data/lib/hqmf-parser/1.0/data_criteria.rb +92 -0
- data/lib/hqmf-parser/1.0/document.rb +195 -0
- data/lib/hqmf-parser/1.0/expression.rb +60 -0
- data/lib/hqmf-parser/1.0/observation.rb +61 -0
- data/lib/hqmf-parser/1.0/population_criteria.rb +75 -0
- data/lib/hqmf-parser/1.0/precondition.rb +90 -0
- data/lib/hqmf-parser/1.0/range.rb +76 -0
- data/lib/hqmf-parser/1.0/restriction.rb +162 -0
- data/lib/hqmf-parser/1.0/utilities.rb +55 -0
- data/lib/hqmf-parser/2.0/data_criteria.rb +372 -0
- data/lib/hqmf-parser/2.0/data_criteria_helpers/dc_base_extract.rb +80 -0
- data/lib/hqmf-parser/2.0/data_criteria_helpers/dc_definition_from_template_or_type_extract.rb +201 -0
- data/lib/hqmf-parser/2.0/data_criteria_helpers/dc_post_processing.rb +85 -0
- data/lib/hqmf-parser/2.0/data_criteria_helpers/dc_specific_occurrences_and_source_data_criteria_extract.rb +117 -0
- data/lib/hqmf-parser/2.0/document.rb +304 -0
- data/lib/hqmf-parser/2.0/document_helpers/doc_population_helper.rb +173 -0
- data/lib/hqmf-parser/2.0/document_helpers/doc_utilities.rb +131 -0
- data/lib/hqmf-parser/2.0/field_value_helper.rb +251 -0
- data/lib/hqmf-parser/2.0/population_criteria.rb +134 -0
- data/lib/hqmf-parser/2.0/precondition.rb +73 -0
- data/lib/hqmf-parser/2.0/source_data_criteria_helper.rb +112 -0
- data/lib/hqmf-parser/2.0/types.rb +448 -0
- data/lib/hqmf-parser/2.0/utilities.rb +45 -0
- data/lib/hqmf-parser/2.0/value_set_helper.rb +104 -0
- data/lib/hqmf-parser/converter/pass1/data_criteria_converter.rb +257 -0
- data/lib/hqmf-parser/converter/pass1/document_converter.rb +133 -0
- data/lib/hqmf-parser/converter/pass1/population_criteria_converter.rb +185 -0
- data/lib/hqmf-parser/converter/pass1/precondition_converter.rb +173 -0
- data/lib/hqmf-parser/converter/pass1/precondition_extractor.rb +201 -0
- data/lib/hqmf-parser/converter/pass1/simple_data_criteria.rb +26 -0
- data/lib/hqmf-parser/converter/pass1/simple_operator.rb +89 -0
- data/lib/hqmf-parser/converter/pass1/simple_population_criteria.rb +10 -0
- data/lib/hqmf-parser/converter/pass1/simple_precondition.rb +51 -0
- data/lib/hqmf-parser/converter/pass1/simple_restriction.rb +64 -0
- data/lib/hqmf-parser/converter/pass2/comparison_converter.rb +112 -0
- data/lib/hqmf-parser/converter/pass2/operator_converter.rb +102 -0
- data/lib/hqmf-parser/cql/data_criteria.rb +57 -0
- data/lib/hqmf-parser/cql/data_criteria_helpers/dc_definition_from_template_or_type_extract.rb +79 -0
- data/lib/hqmf-parser/cql/data_criteria_helpers/dc_post_processing.rb +43 -0
- data/lib/hqmf-parser/cql/document.rb +78 -0
- data/lib/hqmf-parser/cql/document_helpers/doc_population_helper.rb +124 -0
- data/lib/hqmf-parser/cql/value_set_helper.rb +103 -0
- data/lib/hqmf-parser/parser.rb +100 -0
- data/lib/qrda-export/catI-r5/qrda1_r5.rb +125 -0
- data/lib/qrda-export/helper/cat_1_view_helper.rb +142 -0
- data/lib/qrda-export/helper/code_system_helper.rb +77 -0
- data/lib/qrda-export/helper/date_helper.rb +81 -0
- data/lib/qrda-import/base-importers/demographics_importer.rb +47 -0
- data/lib/qrda-import/base-importers/medication_importer.rb +22 -0
- data/lib/qrda-import/base-importers/section_importer.rb +196 -0
- data/lib/qrda-import/cda_identifier.rb +19 -0
- data/lib/qrda-import/data-element-importers/adverse_event_importer.rb +23 -0
- data/lib/qrda-import/data-element-importers/allergy_intolerance_importer.rb +21 -0
- data/lib/qrda-import/data-element-importers/assessment_performed_importer.rb +23 -0
- data/lib/qrda-import/data-element-importers/communication_from_patient_to_provider_importer.rb +18 -0
- data/lib/qrda-import/data-element-importers/communication_from_provider_to_patient_importer.rb +18 -0
- data/lib/qrda-import/data-element-importers/communication_from_provider_to_provider_importer.rb +20 -0
- data/lib/qrda-import/data-element-importers/device_applied_importer.rb +23 -0
- data/lib/qrda-import/data-element-importers/device_order_importer.rb +18 -0
- data/lib/qrda-import/data-element-importers/diagnosis_importer.rb +23 -0
- data/lib/qrda-import/data-element-importers/diagnostic_study_order_importer.rb +20 -0
- data/lib/qrda-import/data-element-importers/diagnostic_study_performed_importer.rb +30 -0
- data/lib/qrda-import/data-element-importers/encounter_order_importer.rb +20 -0
- data/lib/qrda-import/data-element-importers/encounter_performed_importer.rb +41 -0
- data/lib/qrda-import/data-element-importers/immunization_administered_importer.rb +18 -0
- data/lib/qrda-import/data-element-importers/intervention_order_importer.rb +18 -0
- data/lib/qrda-import/data-element-importers/intervention_performed_importer.rb +22 -0
- data/lib/qrda-import/data-element-importers/laboratory_test_order_importer.rb +20 -0
- data/lib/qrda-import/data-element-importers/laboratory_test_performed_importer.rb +28 -0
- data/lib/qrda-import/data-element-importers/medication_active_importer.rb +17 -0
- data/lib/qrda-import/data-element-importers/medication_administered_importer.rb +17 -0
- data/lib/qrda-import/data-element-importers/medication_discharge_importer.rb +19 -0
- data/lib/qrda-import/data-element-importers/medication_dispensed_importer.rb +19 -0
- data/lib/qrda-import/data-element-importers/medication_order_importer.rb +16 -0
- data/lib/qrda-import/data-element-importers/patient_characteristic_expired.rb +21 -0
- data/lib/qrda-import/data-element-importers/physical_exam_performed_importer.rb +26 -0
- data/lib/qrda-import/data-element-importers/procedure_order_importer.rb +26 -0
- data/lib/qrda-import/data-element-importers/procedure_performed_importer.rb +34 -0
- data/lib/qrda-import/data-element-importers/substance_administered_importer.rb +16 -0
- data/lib/qrda-import/entry_finder.rb +20 -0
- data/lib/qrda-import/entry_package.rb +16 -0
- data/lib/qrda-import/narrative_reference_handler.rb +33 -0
- data/lib/qrda-import/patient_importer.rb +105 -0
- data/lib/util/code_system_helper.rb +76 -0
- data/lib/util/counter.rb +20 -0
- data/lib/util/hqmf_template_helper.rb +39 -0
- metadata +340 -0
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module QRDA
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module Cat1
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class SubstanceAdministeredImporter < MedicationAdministeredImporter
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def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:substanceAdministration[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.42']"))
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super(entry_finder)
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@entry_class = QDM::SubstanceAdministered
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end
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def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
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substance_administered = super
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substance_administered
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end
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end
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end
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end
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module QRDA
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module Cat1
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class EntryFinder
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def initialize(entry_xpath)
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@entry_xpath = entry_xpath
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end
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def entries(doc)
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entry_elements = doc.xpath(@entry_xpath)
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if block_given?
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entry_elements.each do |entry_element|
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yield entry_element
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end
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else
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entry_elements
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end
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end
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end
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end
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end
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module QRDA
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module Cat1
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class NarrativeReferenceHandler
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def initialize
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@id_map = {}
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end
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def build_id_map(doc)
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path = "//*[@ID]"
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ids = doc.xpath(path)
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ids.each do |id|
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tag = id['ID']
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value = id.content
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@id_map[tag] = value
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end
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end
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# @param [String] tag
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# @return [String] text description of tag
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def lookup_tag(tag)
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value = @id_map[tag]
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# Not sure why, but sometimes the reference is #<Reference> and the ID value is <Reference>, and
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# sometimes it is #<Reference>. We look for both.
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if !value and tag[0] == '#'
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tag = tag[1,tag.length]
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value = @id_map[tag]
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end
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value
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end
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end
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end
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end
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module QRDA
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module Cat1
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# This class is the central location for taking a QRDA Cat 1 XML document and converting it
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# into the processed form we store in MongoDB. The class does this by running each measure
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# independently on the XML document
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#
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# This class is a Singleton. It should be accessed by calling PatientImporter.instance
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class PatientImporter
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include Singleton
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include DemographicsImporter
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def initialize
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# This differs from other HDS patient importers in that sections can have multiple importers
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@data_element_importers = []
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@data_element_importers << generate_importer(EncounterPerformedImporter)
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@data_element_importers << generate_importer(PhysicalExamPerformedImporter)
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@data_element_importers << generate_importer(LaboratoryTestPerformedImporter)
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@data_element_importers << generate_importer(DiagnosisImporter)
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@data_element_importers << generate_importer(InterventionOrderImporter)
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@data_element_importers << generate_importer(ProcedurePerformedImporter)
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@data_element_importers << generate_importer(MedicationActiveImporter)
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@data_element_importers << generate_importer(AllergyIntoleranceImporter)
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@data_element_importers << generate_importer(MedicationOrderImporter)
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@data_element_importers << generate_importer(DiagnosticStudyOrderImporter)
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@data_element_importers << generate_importer(AdverseEventImporter)
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@data_element_importers << generate_importer(AssessmentPerformedImporter)
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@data_element_importers << generate_importer(CommunicationFromPatientToProviderImporter)
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@data_element_importers << generate_importer(CommunicationFromProviderToPatientImporter)
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@data_element_importers << generate_importer(CommunicationFromProviderToProviderImporter)
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@data_element_importers << generate_importer(DeviceAppliedImporter)
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@data_element_importers << generate_importer(DeviceOrderImporter)
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@data_element_importers << generate_importer(DiagnosticStudyPerformedImporter)
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@data_element_importers << generate_importer(EncounterOrderImporter)
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@data_element_importers << generate_importer(ImmunizationAdministeredImporter)
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@data_element_importers << generate_importer(InterventionPerformedImporter)
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@data_element_importers << generate_importer(LaboratoryTestOrderImporter)
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@data_element_importers << generate_importer(MedicationAdministeredImporter)
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@data_element_importers << generate_importer(MedicationDischargeImporter)
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@data_element_importers << generate_importer(MedicationDispensedImporter)
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@data_element_importers << generate_importer(PatientCharacteristicExpired)
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@data_element_importers << generate_importer(ProcedureOrderImporter)
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@data_element_importers << generate_importer(SubstanceAdministeredImporter)
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end
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def parse_cat1(doc)
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patient = QDM::Patient.new
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entry_id_map = {}
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import_data_elements(patient, doc, entry_id_map)
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normalize_references(patient, entry_id_map)
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get_demographics(patient, doc)
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patient
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end
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def import_data_elements(patient, doc, entry_id_map)
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context = doc.xpath("/cda:ClinicalDocument/cda:component/cda:structuredBody/cda:component/cda:section[cda:templateId/@root = '2.16.840.1.113883.10.20.24.2.1']")
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nrh = NarrativeReferenceHandler.new
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nrh.build_id_map(doc)
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@data_element_importers.each do |entry_package|
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data_elements, id_map = entry_package.package_entries(context, nrh)
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new_data_elements = []
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id_map.each_value do |elem_ids|
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elem_id = elem_ids.first
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data_element = data_elements.find { |de| de.id == elem_id }
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elem_ids[1,elem_ids.length].each do |merge_id|
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merge_element = data_elements.find { |de| de.id == merge_id }
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data_element.merge!(merge_element)
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end
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new_data_elements << data_element
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end
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patient.dataElements << new_data_elements
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entry_id_map.merge!(id_map)
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end
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end
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def get_patient_expired(record, doc)
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entry_elements = doc.xpath("/cda:ClinicalDocument/cda:component/cda:structuredBody/cda:component/cda:section[cda:templateId/@root = '2.16.840.1.113883.10.20.24.2.1']/cda:entry/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.54']")
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return unless entry_elements.empty?
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record.expired = true
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record.deathdate = HealthDataStandards::Util::HL7Helper.timestamp_to_integer(entry_elements.at_xpath("./cda:effectiveTime/cda:low")['value'])
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end
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def normalize_references(patient, entry_id_map)
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patient.dataElements.each do |data_element|
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if data_element.respond_to?(:relatedTo) && data_element.relatedTo
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data_element.relatedTo.map! { |related_to| entry_id_map[related_to] }
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end
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end
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end
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private
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def generate_importer(importer_class)
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EntryPackage.new(importer_class.new)
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end
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end
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end
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end
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module HQMF
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module Util
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# General helpers for working with codes and code systems
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class CodeSystemHelper
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CODE_SYSTEMS = {
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'2.16.840.1.113883.6.1' => 'LOINC',
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'2.16.840.1.113883.6.96' => 'SNOMED-CT',
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'2.16.840.1.113883.6.12' => 'CPT',
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#'2.16.840.1.113883.3.88.12.80.32' => 'CPT', # Encounter Type from C32, a subset of CPT
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'2.16.840.1.113883.6.88' => 'RxNorm',
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'2.16.840.1.113883.6.103' => 'ICD-9-CM',
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'2.16.840.1.113883.6.104' => 'ICD-9-PCS',
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'2.16.840.1.113883.6.4' => 'ICD-10-PCS',
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'2.16.840.1.113883.6.90' => 'ICD-10-CM',
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'2.16.840.1.113883.6.14' => 'HCP',
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'2.16.840.1.113883.6.285' => 'HCPCS',
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'2.16.840.1.113883.5.2' => "HL7 Marital Status",
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'2.16.840.1.113883.12.292' => 'CVX',
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'2.16.840.1.113883.5.83' => 'HITSP C80 Observation Status',
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'2.16.840.1.113883.3.26.1.1' => 'NCI Thesaurus',
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'2.16.840.1.113883.3.88.12.80.20' => 'FDA',
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"2.16.840.1.113883.4.9" => "UNII",
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"2.16.840.1.113883.6.69" => "NDC",
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'2.16.840.1.113883.5.14' => 'HL7 ActStatus',
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'2.16.840.1.113883.6.259' => 'HL7 Healthcare Service Location',
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'2.16.840.1.113883.12.112' => 'DischargeDisposition',
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'2.16.840.1.113883.5.4' => 'HL7 Act Code',
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'2.16.840.1.113883.1.11.18877' => 'HL7 Relationship Code',
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'2.16.840.1.113883.6.238' => 'CDC Race',
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'2.16.840.1.113883.6.177' => 'NLM MeSH',
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'2.16.840.1.113883.5.1076' => "Religious Affiliation",
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+
'2.16.840.1.113883.1.11.19717' => "HL7 ActNoImmunicationReason",
|
33
|
+
'2.16.840.1.113883.3.88.12.80.33' => "NUBC",
|
34
|
+
'2.16.840.1.113883.1.11.78' => "HL7 Observation Interpretation",
|
35
|
+
'2.16.840.1.113883.3.221.5' => "Source of Payment Typology",
|
36
|
+
'2.16.840.1.113883.6.13' => 'CDT',
|
37
|
+
'2.16.840.1.113883.18.2' => 'AdministrativeSex'
|
38
|
+
}
|
39
|
+
|
40
|
+
CODE_SYSTEM_ALIASES = {
|
41
|
+
'FDA SPL' => 'NCI Thesaurus',
|
42
|
+
'HSLOC' => 'HL7 Healthcare Service Location',
|
43
|
+
'SOP' => "Source of Payment Typology"
|
44
|
+
}
|
45
|
+
|
46
|
+
# Some old OID are still around in data, this hash maps retired OID values to
|
47
|
+
# the new value
|
48
|
+
OID_ALIASES = {
|
49
|
+
'2.16.840.1.113883.6.59' => '2.16.840.1.113883.12.292' # CVX
|
50
|
+
}
|
51
|
+
|
52
|
+
# Returns the name of a code system given an oid
|
53
|
+
# @param [String] oid of a code system
|
54
|
+
# @return [String] the name of the code system as described in the measure definition JSON
|
55
|
+
def self.code_system_for(oid)
|
56
|
+
oid = OID_ALIASES[oid] if OID_ALIASES[oid]
|
57
|
+
CODE_SYSTEMS[oid] || "Unknown"
|
58
|
+
end
|
59
|
+
|
60
|
+
# Returns the oid for a code system given a codesystem name
|
61
|
+
# @param [String] the name of the code system
|
62
|
+
# @return [String] the oid of the code system
|
63
|
+
def self.oid_for_code_system(code_system)
|
64
|
+
code_system = CODE_SYSTEM_ALIASES[code_system] if CODE_SYSTEM_ALIASES[code_system]
|
65
|
+
CODE_SYSTEMS.invert[code_system]
|
66
|
+
end
|
67
|
+
|
68
|
+
# Returns the whole map of OIDs to code systems
|
69
|
+
# @terurn [Hash] oids as keys, code system names as values
|
70
|
+
def self.code_systems
|
71
|
+
CODE_SYSTEMS
|
72
|
+
end
|
73
|
+
end
|
74
|
+
end
|
75
|
+
end
|
76
|
+
|
data/lib/util/counter.rb
ADDED
@@ -0,0 +1,20 @@
|
|
1
|
+
module HQMF
|
2
|
+
# Simple class to issue monotonically increasing integer identifiers
|
3
|
+
class InstanceCounter
|
4
|
+
def initialize
|
5
|
+
@count=0
|
6
|
+
end
|
7
|
+
|
8
|
+
def reset
|
9
|
+
@count=0
|
10
|
+
end
|
11
|
+
|
12
|
+
def next
|
13
|
+
@count+=1
|
14
|
+
end
|
15
|
+
end
|
16
|
+
|
17
|
+
class Counter < InstanceCounter
|
18
|
+
include Singleton
|
19
|
+
end
|
20
|
+
end
|
@@ -0,0 +1,39 @@
|
|
1
|
+
module HQMF
|
2
|
+
module Util
|
3
|
+
# General helpers for working with codes and code systems
|
4
|
+
class HQMFTemplateHelper
|
5
|
+
|
6
|
+
def self.definition_for_template_id(template_id, version="r1")
|
7
|
+
template_id_map(version)[template_id]
|
8
|
+
end
|
9
|
+
|
10
|
+
def self.template_id_map(version)
|
11
|
+
if @id_map.blank?
|
12
|
+
@id_map = {
|
13
|
+
'r1' => JSON.parse(File.read(File.expand_path('../hqmf_template_oid_map.json', __FILE__))),
|
14
|
+
'r2' => JSON.parse(File.read(File.expand_path('../hqmfr2_template_oid_map.json', __FILE__))),
|
15
|
+
'r2cql' => JSON.parse(File.read(File.expand_path('../hqmfr2cql_template_oid_map.json', __FILE__)))
|
16
|
+
}
|
17
|
+
end
|
18
|
+
@id_map[version]
|
19
|
+
end
|
20
|
+
|
21
|
+
def self.template_id_by_definition_and_status(definition, status, negation=false, version="r1")
|
22
|
+
case version
|
23
|
+
when "r1"
|
24
|
+
kv_pair = template_id_map(version).find {|k, v| v['definition'] == definition &&
|
25
|
+
v['status'] == status &&
|
26
|
+
v['negation'] == negation}
|
27
|
+
when "r2", "r2cql"
|
28
|
+
kv_pair = template_id_map(version).find {|k, v| v['definition'] == definition &&
|
29
|
+
v['status'] == status}
|
30
|
+
end
|
31
|
+
if kv_pair
|
32
|
+
kv_pair.first
|
33
|
+
else
|
34
|
+
nil
|
35
|
+
end
|
36
|
+
end
|
37
|
+
end
|
38
|
+
end
|
39
|
+
end
|
metadata
ADDED
@@ -0,0 +1,340 @@
|
|
1
|
+
--- !ruby/object:Gem::Specification
|
2
|
+
name: cqm-parsers
|
3
|
+
version: !ruby/object:Gem::Version
|
4
|
+
version: 0.1.0
|
5
|
+
platform: ruby
|
6
|
+
authors:
|
7
|
+
- The MITRE Corporation
|
8
|
+
autorequire:
|
9
|
+
bindir: bin
|
10
|
+
cert_chain: []
|
11
|
+
date: 2018-07-25 00:00:00.000000000 Z
|
12
|
+
dependencies:
|
13
|
+
- !ruby/object:Gem::Dependency
|
14
|
+
name: rest-client
|
15
|
+
requirement: !ruby/object:Gem::Requirement
|
16
|
+
requirements:
|
17
|
+
- - "~>"
|
18
|
+
- !ruby/object:Gem::Version
|
19
|
+
version: 1.8.0
|
20
|
+
type: :runtime
|
21
|
+
prerelease: false
|
22
|
+
version_requirements: !ruby/object:Gem::Requirement
|
23
|
+
requirements:
|
24
|
+
- - "~>"
|
25
|
+
- !ruby/object:Gem::Version
|
26
|
+
version: 1.8.0
|
27
|
+
- !ruby/object:Gem::Dependency
|
28
|
+
name: erubis
|
29
|
+
requirement: !ruby/object:Gem::Requirement
|
30
|
+
requirements:
|
31
|
+
- - "~>"
|
32
|
+
- !ruby/object:Gem::Version
|
33
|
+
version: 2.7.0
|
34
|
+
type: :runtime
|
35
|
+
prerelease: false
|
36
|
+
version_requirements: !ruby/object:Gem::Requirement
|
37
|
+
requirements:
|
38
|
+
- - "~>"
|
39
|
+
- !ruby/object:Gem::Version
|
40
|
+
version: 2.7.0
|
41
|
+
- !ruby/object:Gem::Dependency
|
42
|
+
name: mongoid
|
43
|
+
requirement: !ruby/object:Gem::Requirement
|
44
|
+
requirements:
|
45
|
+
- - "~>"
|
46
|
+
- !ruby/object:Gem::Version
|
47
|
+
version: 5.0.0
|
48
|
+
type: :runtime
|
49
|
+
prerelease: false
|
50
|
+
version_requirements: !ruby/object:Gem::Requirement
|
51
|
+
requirements:
|
52
|
+
- - "~>"
|
53
|
+
- !ruby/object:Gem::Version
|
54
|
+
version: 5.0.0
|
55
|
+
- !ruby/object:Gem::Dependency
|
56
|
+
name: mongoid-tree
|
57
|
+
requirement: !ruby/object:Gem::Requirement
|
58
|
+
requirements:
|
59
|
+
- - "~>"
|
60
|
+
- !ruby/object:Gem::Version
|
61
|
+
version: 2.0.0
|
62
|
+
type: :runtime
|
63
|
+
prerelease: false
|
64
|
+
version_requirements: !ruby/object:Gem::Requirement
|
65
|
+
requirements:
|
66
|
+
- - "~>"
|
67
|
+
- !ruby/object:Gem::Version
|
68
|
+
version: 2.0.0
|
69
|
+
- !ruby/object:Gem::Dependency
|
70
|
+
name: activesupport
|
71
|
+
requirement: !ruby/object:Gem::Requirement
|
72
|
+
requirements:
|
73
|
+
- - "~>"
|
74
|
+
- !ruby/object:Gem::Version
|
75
|
+
version: 4.2.0
|
76
|
+
type: :runtime
|
77
|
+
prerelease: false
|
78
|
+
version_requirements: !ruby/object:Gem::Requirement
|
79
|
+
requirements:
|
80
|
+
- - "~>"
|
81
|
+
- !ruby/object:Gem::Version
|
82
|
+
version: 4.2.0
|
83
|
+
- !ruby/object:Gem::Dependency
|
84
|
+
name: protected_attributes
|
85
|
+
requirement: !ruby/object:Gem::Requirement
|
86
|
+
requirements:
|
87
|
+
- - "~>"
|
88
|
+
- !ruby/object:Gem::Version
|
89
|
+
version: 1.0.5
|
90
|
+
type: :runtime
|
91
|
+
prerelease: false
|
92
|
+
version_requirements: !ruby/object:Gem::Requirement
|
93
|
+
requirements:
|
94
|
+
- - "~>"
|
95
|
+
- !ruby/object:Gem::Version
|
96
|
+
version: 1.0.5
|
97
|
+
- !ruby/object:Gem::Dependency
|
98
|
+
name: uuid
|
99
|
+
requirement: !ruby/object:Gem::Requirement
|
100
|
+
requirements:
|
101
|
+
- - "~>"
|
102
|
+
- !ruby/object:Gem::Version
|
103
|
+
version: 2.3.7
|
104
|
+
type: :runtime
|
105
|
+
prerelease: false
|
106
|
+
version_requirements: !ruby/object:Gem::Requirement
|
107
|
+
requirements:
|
108
|
+
- - "~>"
|
109
|
+
- !ruby/object:Gem::Version
|
110
|
+
version: 2.3.7
|
111
|
+
- !ruby/object:Gem::Dependency
|
112
|
+
name: builder
|
113
|
+
requirement: !ruby/object:Gem::Requirement
|
114
|
+
requirements:
|
115
|
+
- - "~>"
|
116
|
+
- !ruby/object:Gem::Version
|
117
|
+
version: '3.1'
|
118
|
+
type: :runtime
|
119
|
+
prerelease: false
|
120
|
+
version_requirements: !ruby/object:Gem::Requirement
|
121
|
+
requirements:
|
122
|
+
- - "~>"
|
123
|
+
- !ruby/object:Gem::Version
|
124
|
+
version: '3.1'
|
125
|
+
- !ruby/object:Gem::Dependency
|
126
|
+
name: nokogiri
|
127
|
+
requirement: !ruby/object:Gem::Requirement
|
128
|
+
requirements:
|
129
|
+
- - "~>"
|
130
|
+
- !ruby/object:Gem::Version
|
131
|
+
version: 1.8.3
|
132
|
+
type: :runtime
|
133
|
+
prerelease: false
|
134
|
+
version_requirements: !ruby/object:Gem::Requirement
|
135
|
+
requirements:
|
136
|
+
- - "~>"
|
137
|
+
- !ruby/object:Gem::Version
|
138
|
+
version: 1.8.3
|
139
|
+
- !ruby/object:Gem::Dependency
|
140
|
+
name: highline
|
141
|
+
requirement: !ruby/object:Gem::Requirement
|
142
|
+
requirements:
|
143
|
+
- - "~>"
|
144
|
+
- !ruby/object:Gem::Version
|
145
|
+
version: 1.7.0
|
146
|
+
type: :runtime
|
147
|
+
prerelease: false
|
148
|
+
version_requirements: !ruby/object:Gem::Requirement
|
149
|
+
requirements:
|
150
|
+
- - "~>"
|
151
|
+
- !ruby/object:Gem::Version
|
152
|
+
version: 1.7.0
|
153
|
+
- !ruby/object:Gem::Dependency
|
154
|
+
name: rubyzip
|
155
|
+
requirement: !ruby/object:Gem::Requirement
|
156
|
+
requirements:
|
157
|
+
- - "~>"
|
158
|
+
- !ruby/object:Gem::Version
|
159
|
+
version: 1.2.1
|
160
|
+
type: :runtime
|
161
|
+
prerelease: false
|
162
|
+
version_requirements: !ruby/object:Gem::Requirement
|
163
|
+
requirements:
|
164
|
+
- - "~>"
|
165
|
+
- !ruby/object:Gem::Version
|
166
|
+
version: 1.2.1
|
167
|
+
- !ruby/object:Gem::Dependency
|
168
|
+
name: zip-zip
|
169
|
+
requirement: !ruby/object:Gem::Requirement
|
170
|
+
requirements:
|
171
|
+
- - "~>"
|
172
|
+
- !ruby/object:Gem::Version
|
173
|
+
version: '0.3'
|
174
|
+
type: :runtime
|
175
|
+
prerelease: false
|
176
|
+
version_requirements: !ruby/object:Gem::Requirement
|
177
|
+
requirements:
|
178
|
+
- - "~>"
|
179
|
+
- !ruby/object:Gem::Version
|
180
|
+
version: '0.3'
|
181
|
+
- !ruby/object:Gem::Dependency
|
182
|
+
name: log4r
|
183
|
+
requirement: !ruby/object:Gem::Requirement
|
184
|
+
requirements:
|
185
|
+
- - "~>"
|
186
|
+
- !ruby/object:Gem::Version
|
187
|
+
version: 1.1.10
|
188
|
+
type: :runtime
|
189
|
+
prerelease: false
|
190
|
+
version_requirements: !ruby/object:Gem::Requirement
|
191
|
+
requirements:
|
192
|
+
- - "~>"
|
193
|
+
- !ruby/object:Gem::Version
|
194
|
+
version: 1.1.10
|
195
|
+
- !ruby/object:Gem::Dependency
|
196
|
+
name: memoist
|
197
|
+
requirement: !ruby/object:Gem::Requirement
|
198
|
+
requirements:
|
199
|
+
- - "~>"
|
200
|
+
- !ruby/object:Gem::Version
|
201
|
+
version: 0.9.1
|
202
|
+
type: :runtime
|
203
|
+
prerelease: false
|
204
|
+
version_requirements: !ruby/object:Gem::Requirement
|
205
|
+
requirements:
|
206
|
+
- - "~>"
|
207
|
+
- !ruby/object:Gem::Version
|
208
|
+
version: 0.9.1
|
209
|
+
description: A library for parsing HQMF documents.
|
210
|
+
email: tacoma-list@lists.mitre.org
|
211
|
+
executables: []
|
212
|
+
extensions: []
|
213
|
+
extra_rdoc_files: []
|
214
|
+
files:
|
215
|
+
- Gemfile
|
216
|
+
- README.md
|
217
|
+
- Rakefile
|
218
|
+
- lib/ext/code.rb
|
219
|
+
- lib/ext/data_element.rb
|
220
|
+
- lib/hqmf-model/attribute.rb
|
221
|
+
- lib/hqmf-model/data_criteria.rb
|
222
|
+
- lib/hqmf-model/document.rb
|
223
|
+
- lib/hqmf-model/population_criteria.rb
|
224
|
+
- lib/hqmf-model/precondition.rb
|
225
|
+
- lib/hqmf-model/types.rb
|
226
|
+
- lib/hqmf-model/utilities.rb
|
227
|
+
- lib/hqmf-parser.rb
|
228
|
+
- lib/hqmf-parser/1.0/attribute.rb
|
229
|
+
- lib/hqmf-parser/1.0/comparison.rb
|
230
|
+
- lib/hqmf-parser/1.0/data_criteria.rb
|
231
|
+
- lib/hqmf-parser/1.0/document.rb
|
232
|
+
- lib/hqmf-parser/1.0/expression.rb
|
233
|
+
- lib/hqmf-parser/1.0/observation.rb
|
234
|
+
- lib/hqmf-parser/1.0/population_criteria.rb
|
235
|
+
- lib/hqmf-parser/1.0/precondition.rb
|
236
|
+
- lib/hqmf-parser/1.0/range.rb
|
237
|
+
- lib/hqmf-parser/1.0/restriction.rb
|
238
|
+
- lib/hqmf-parser/1.0/utilities.rb
|
239
|
+
- lib/hqmf-parser/2.0/data_criteria.rb
|
240
|
+
- lib/hqmf-parser/2.0/data_criteria_helpers/dc_base_extract.rb
|
241
|
+
- lib/hqmf-parser/2.0/data_criteria_helpers/dc_definition_from_template_or_type_extract.rb
|
242
|
+
- lib/hqmf-parser/2.0/data_criteria_helpers/dc_post_processing.rb
|
243
|
+
- lib/hqmf-parser/2.0/data_criteria_helpers/dc_specific_occurrences_and_source_data_criteria_extract.rb
|
244
|
+
- lib/hqmf-parser/2.0/document.rb
|
245
|
+
- lib/hqmf-parser/2.0/document_helpers/doc_population_helper.rb
|
246
|
+
- lib/hqmf-parser/2.0/document_helpers/doc_utilities.rb
|
247
|
+
- lib/hqmf-parser/2.0/field_value_helper.rb
|
248
|
+
- lib/hqmf-parser/2.0/population_criteria.rb
|
249
|
+
- lib/hqmf-parser/2.0/precondition.rb
|
250
|
+
- lib/hqmf-parser/2.0/source_data_criteria_helper.rb
|
251
|
+
- lib/hqmf-parser/2.0/types.rb
|
252
|
+
- lib/hqmf-parser/2.0/utilities.rb
|
253
|
+
- lib/hqmf-parser/2.0/value_set_helper.rb
|
254
|
+
- lib/hqmf-parser/converter/pass1/data_criteria_converter.rb
|
255
|
+
- lib/hqmf-parser/converter/pass1/document_converter.rb
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256
|
+
- lib/hqmf-parser/converter/pass1/population_criteria_converter.rb
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257
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+
- lib/hqmf-parser/converter/pass1/precondition_converter.rb
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258
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+
- lib/hqmf-parser/converter/pass1/precondition_extractor.rb
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259
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+
- lib/hqmf-parser/converter/pass1/simple_data_criteria.rb
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260
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+
- lib/hqmf-parser/converter/pass1/simple_operator.rb
|
261
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+
- lib/hqmf-parser/converter/pass1/simple_population_criteria.rb
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262
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+
- lib/hqmf-parser/converter/pass1/simple_precondition.rb
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263
|
+
- lib/hqmf-parser/converter/pass1/simple_restriction.rb
|
264
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+
- lib/hqmf-parser/converter/pass2/comparison_converter.rb
|
265
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+
- lib/hqmf-parser/converter/pass2/operator_converter.rb
|
266
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+
- lib/hqmf-parser/cql/data_criteria.rb
|
267
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+
- lib/hqmf-parser/cql/data_criteria_helpers/dc_definition_from_template_or_type_extract.rb
|
268
|
+
- lib/hqmf-parser/cql/data_criteria_helpers/dc_post_processing.rb
|
269
|
+
- lib/hqmf-parser/cql/document.rb
|
270
|
+
- lib/hqmf-parser/cql/document_helpers/doc_population_helper.rb
|
271
|
+
- lib/hqmf-parser/cql/value_set_helper.rb
|
272
|
+
- lib/hqmf-parser/parser.rb
|
273
|
+
- lib/qrda-export/catI-r5/qrda1_r5.rb
|
274
|
+
- lib/qrda-export/helper/cat_1_view_helper.rb
|
275
|
+
- lib/qrda-export/helper/code_system_helper.rb
|
276
|
+
- lib/qrda-export/helper/date_helper.rb
|
277
|
+
- lib/qrda-import/base-importers/demographics_importer.rb
|
278
|
+
- lib/qrda-import/base-importers/medication_importer.rb
|
279
|
+
- lib/qrda-import/base-importers/section_importer.rb
|
280
|
+
- lib/qrda-import/cda_identifier.rb
|
281
|
+
- lib/qrda-import/data-element-importers/adverse_event_importer.rb
|
282
|
+
- lib/qrda-import/data-element-importers/allergy_intolerance_importer.rb
|
283
|
+
- lib/qrda-import/data-element-importers/assessment_performed_importer.rb
|
284
|
+
- lib/qrda-import/data-element-importers/communication_from_patient_to_provider_importer.rb
|
285
|
+
- lib/qrda-import/data-element-importers/communication_from_provider_to_patient_importer.rb
|
286
|
+
- lib/qrda-import/data-element-importers/communication_from_provider_to_provider_importer.rb
|
287
|
+
- lib/qrda-import/data-element-importers/device_applied_importer.rb
|
288
|
+
- lib/qrda-import/data-element-importers/device_order_importer.rb
|
289
|
+
- lib/qrda-import/data-element-importers/diagnosis_importer.rb
|
290
|
+
- lib/qrda-import/data-element-importers/diagnostic_study_order_importer.rb
|
291
|
+
- lib/qrda-import/data-element-importers/diagnostic_study_performed_importer.rb
|
292
|
+
- lib/qrda-import/data-element-importers/encounter_order_importer.rb
|
293
|
+
- lib/qrda-import/data-element-importers/encounter_performed_importer.rb
|
294
|
+
- lib/qrda-import/data-element-importers/immunization_administered_importer.rb
|
295
|
+
- lib/qrda-import/data-element-importers/intervention_order_importer.rb
|
296
|
+
- lib/qrda-import/data-element-importers/intervention_performed_importer.rb
|
297
|
+
- lib/qrda-import/data-element-importers/laboratory_test_order_importer.rb
|
298
|
+
- lib/qrda-import/data-element-importers/laboratory_test_performed_importer.rb
|
299
|
+
- lib/qrda-import/data-element-importers/medication_active_importer.rb
|
300
|
+
- lib/qrda-import/data-element-importers/medication_administered_importer.rb
|
301
|
+
- lib/qrda-import/data-element-importers/medication_discharge_importer.rb
|
302
|
+
- lib/qrda-import/data-element-importers/medication_dispensed_importer.rb
|
303
|
+
- lib/qrda-import/data-element-importers/medication_order_importer.rb
|
304
|
+
- lib/qrda-import/data-element-importers/patient_characteristic_expired.rb
|
305
|
+
- lib/qrda-import/data-element-importers/physical_exam_performed_importer.rb
|
306
|
+
- lib/qrda-import/data-element-importers/procedure_order_importer.rb
|
307
|
+
- lib/qrda-import/data-element-importers/procedure_performed_importer.rb
|
308
|
+
- lib/qrda-import/data-element-importers/substance_administered_importer.rb
|
309
|
+
- lib/qrda-import/entry_finder.rb
|
310
|
+
- lib/qrda-import/entry_package.rb
|
311
|
+
- lib/qrda-import/narrative_reference_handler.rb
|
312
|
+
- lib/qrda-import/patient_importer.rb
|
313
|
+
- lib/util/code_system_helper.rb
|
314
|
+
- lib/util/counter.rb
|
315
|
+
- lib/util/hqmf_template_helper.rb
|
316
|
+
homepage: https://github.com/projecttacoma/cqm-parsers
|
317
|
+
licenses:
|
318
|
+
- Apache-2.0
|
319
|
+
metadata: {}
|
320
|
+
post_install_message:
|
321
|
+
rdoc_options: []
|
322
|
+
require_paths:
|
323
|
+
- lib
|
324
|
+
required_ruby_version: !ruby/object:Gem::Requirement
|
325
|
+
requirements:
|
326
|
+
- - ">="
|
327
|
+
- !ruby/object:Gem::Version
|
328
|
+
version: '0'
|
329
|
+
required_rubygems_version: !ruby/object:Gem::Requirement
|
330
|
+
requirements:
|
331
|
+
- - ">="
|
332
|
+
- !ruby/object:Gem::Version
|
333
|
+
version: '0'
|
334
|
+
requirements: []
|
335
|
+
rubyforge_project:
|
336
|
+
rubygems_version: 2.6.14
|
337
|
+
signing_key:
|
338
|
+
specification_version: 4
|
339
|
+
summary: A library for parsing HQMF documents.
|
340
|
+
test_files: []
|