cqm-models 3.1.0 → 4.0.2
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- checksums.yaml +4 -4
- data/.eslintrc.json +6 -0
- data/.github/workflows/ci.yml +2 -1
- data/README.md +3 -2
- data/app/assets/javascripts/AdverseEvent.js +2 -2
- data/app/assets/javascripts/AllDataElements.js +2 -2
- data/app/assets/javascripts/AllergyIntolerance.js +2 -2
- data/app/assets/javascripts/AssessmentOrder.js +2 -2
- data/app/assets/javascripts/AssessmentPerformed.js +3 -2
- data/app/assets/javascripts/AssessmentRecommended.js +2 -2
- data/app/assets/javascripts/CareGoal.js +2 -2
- data/app/assets/javascripts/CommunicationPerformed.js +3 -3
- data/app/assets/javascripts/DeviceOrder.js +2 -2
- data/app/assets/javascripts/DeviceRecommended.js +2 -2
- data/app/assets/javascripts/Diagnosis.js +2 -2
- data/app/assets/javascripts/DiagnosticStudyOrder.js +2 -2
- data/app/assets/javascripts/DiagnosticStudyPerformed.js +4 -2
- data/app/assets/javascripts/DiagnosticStudyRecommended.js +2 -2
- data/app/assets/javascripts/EncounterOrder.js +2 -2
- data/app/assets/javascripts/EncounterPerformed.js +7 -3
- data/app/assets/javascripts/EncounterRecommended.js +2 -2
- data/app/assets/javascripts/FamilyHistory.js +2 -2
- data/app/assets/javascripts/ImmunizationAdministered.js +2 -2
- data/app/assets/javascripts/ImmunizationOrder.js +2 -2
- data/app/assets/javascripts/InterventionOrder.js +2 -2
- data/app/assets/javascripts/InterventionPerformed.js +3 -2
- data/app/assets/javascripts/InterventionRecommended.js +2 -2
- data/app/assets/javascripts/LaboratoryTestOrder.js +2 -2
- data/app/assets/javascripts/LaboratoryTestPerformed.js +4 -2
- data/app/assets/javascripts/LaboratoryTestRecommended.js +2 -2
- data/app/assets/javascripts/MedicationActive.js +2 -2
- data/app/assets/javascripts/MedicationAdministered.js +2 -2
- data/app/assets/javascripts/MedicationDischarge.js +3 -3
- data/app/assets/javascripts/MedicationDispensed.js +4 -3
- data/app/assets/javascripts/MedicationOrder.js +3 -2
- data/app/assets/javascripts/Participation.js +1 -2
- data/app/assets/javascripts/PatientCareExperience.js +2 -2
- data/app/assets/javascripts/PatientCharacteristic.js +1 -1
- data/app/assets/javascripts/PatientCharacteristicBirthdate.js +1 -1
- data/app/assets/javascripts/PatientCharacteristicClinicalTrialParticipant.js +1 -1
- data/app/assets/javascripts/PatientCharacteristicEthnicity.js +1 -1
- data/app/assets/javascripts/PatientCharacteristicExpired.js +1 -1
- data/app/assets/javascripts/PatientCharacteristicPayer.js +1 -1
- data/app/assets/javascripts/PatientCharacteristicRace.js +1 -1
- data/app/assets/javascripts/PatientCharacteristicSex.js +1 -1
- data/app/assets/javascripts/PhysicalExamOrder.js +2 -2
- data/app/assets/javascripts/PhysicalExamPerformed.js +3 -2
- data/app/assets/javascripts/PhysicalExamRecommended.js +2 -2
- data/app/assets/javascripts/ProcedureOrder.js +2 -2
- data/app/assets/javascripts/ProcedurePerformed.js +3 -3
- data/app/assets/javascripts/ProcedureRecommended.js +2 -2
- data/app/assets/javascripts/ProviderCareExperience.js +2 -2
- data/app/assets/javascripts/QDMPatient.js +26 -1
- data/app/assets/javascripts/RelatedPerson.js +1 -1
- data/app/assets/javascripts/SubstanceAdministered.js +2 -2
- data/app/assets/javascripts/SubstanceOrder.js +2 -2
- data/app/assets/javascripts/SubstanceRecommended.js +2 -2
- data/app/assets/javascripts/Symptom.js +2 -2
- data/app/assets/javascripts/attributes/Component.js +2 -2
- data/app/assets/javascripts/attributes/DiagnosisComponent.js +1 -1
- data/app/assets/javascripts/attributes/Entity.js +2 -2
- data/app/assets/javascripts/attributes/FacilityLocation.js +1 -1
- data/app/assets/javascripts/attributes/Identifier.js +1 -1
- data/app/assets/javascripts/attributes/Location.js +32 -0
- data/app/assets/javascripts/attributes/Organization.js +1 -1
- data/app/assets/javascripts/basetypes/AnyEntity.js +3 -0
- data/app/assets/javascripts/basetypes/DataElement.js +26 -1
- data/app/models/hqmfOid_to_datatype_map.json +1 -1
- data/app/models/models.rb +2 -2
- data/app/models/qdm/adverse_event.rb +2 -2
- data/app/models/qdm/allergy_intolerance.rb +2 -2
- data/app/models/qdm/assessment_order.rb +2 -2
- data/app/models/qdm/assessment_performed.rb +3 -2
- data/app/models/qdm/assessment_recommended.rb +2 -2
- data/app/models/qdm/attributes/component.rb +1 -1
- data/app/models/qdm/attributes/diagnosis_component.rb +1 -1
- data/app/models/qdm/attributes/entity.rb +1 -1
- data/app/models/qdm/attributes/facility_location.rb +1 -1
- data/app/models/qdm/attributes/identifier.rb +1 -1
- data/app/models/qdm/attributes/location.rb +9 -0
- data/app/models/qdm/attributes/organization.rb +1 -1
- data/app/models/qdm/basetypes/data_element.rb +5 -0
- data/app/models/qdm/care_goal.rb +2 -2
- data/app/models/qdm/communication_performed.rb +3 -3
- data/app/models/qdm/device_order.rb +2 -2
- data/app/models/qdm/device_recommended.rb +2 -2
- data/app/models/qdm/diagnosis.rb +2 -2
- data/app/models/qdm/diagnostic_study_order.rb +2 -2
- data/app/models/qdm/diagnostic_study_performed.rb +4 -2
- data/app/models/qdm/diagnostic_study_recommended.rb +2 -2
- data/app/models/qdm/encounter_order.rb +2 -2
- data/app/models/qdm/encounter_performed.rb +4 -3
- data/app/models/qdm/encounter_recommended.rb +2 -2
- data/app/models/qdm/family_history.rb +2 -2
- data/app/models/qdm/immunization_administered.rb +2 -2
- data/app/models/qdm/immunization_order.rb +2 -2
- data/app/models/qdm/intervention_order.rb +2 -2
- data/app/models/qdm/intervention_performed.rb +3 -2
- data/app/models/qdm/intervention_recommended.rb +2 -2
- data/app/models/qdm/laboratory_test_order.rb +2 -2
- data/app/models/qdm/laboratory_test_performed.rb +4 -2
- data/app/models/qdm/laboratory_test_recommended.rb +2 -2
- data/app/models/qdm/medication_active.rb +2 -2
- data/app/models/qdm/medication_administered.rb +2 -2
- data/app/models/qdm/medication_discharge.rb +3 -3
- data/app/models/qdm/medication_dispensed.rb +4 -3
- data/app/models/qdm/medication_order.rb +3 -2
- data/app/models/qdm/participation.rb +1 -2
- data/app/models/qdm/patient.rb +1 -1
- data/app/models/qdm/patient_care_experience.rb +2 -2
- data/app/models/qdm/patient_characteristic.rb +1 -1
- data/app/models/qdm/patient_characteristic_birthdate.rb +1 -1
- data/app/models/qdm/patient_characteristic_clinical_trial_participant.rb +1 -1
- data/app/models/qdm/patient_characteristic_ethnicity.rb +1 -1
- data/app/models/qdm/patient_characteristic_expired.rb +1 -1
- data/app/models/qdm/patient_characteristic_payer.rb +1 -1
- data/app/models/qdm/patient_characteristic_race.rb +1 -1
- data/app/models/qdm/patient_characteristic_sex.rb +1 -1
- data/app/models/qdm/physical_exam_order.rb +2 -2
- data/app/models/qdm/physical_exam_performed.rb +3 -2
- data/app/models/qdm/physical_exam_recommended.rb +2 -2
- data/app/models/qdm/procedure_order.rb +2 -2
- data/app/models/qdm/procedure_performed.rb +3 -3
- data/app/models/qdm/procedure_recommended.rb +2 -2
- data/app/models/qdm/provider_care_experience.rb +2 -2
- data/app/models/qdm/related_person.rb +1 -1
- data/app/models/qdm/substance_administered.rb +2 -2
- data/app/models/qdm/substance_order.rb +2 -2
- data/app/models/qdm/substance_recommended.rb +2 -2
- data/app/models/qdm/symptom.rb +2 -2
- data/bin/validate_generator.sh +1 -1
- data/cqm-models.gemspec +1 -1
- data/data/oids_qdm_5.6.json +335 -0
- data/dist/browser.js +2200 -1451
- data/dist/index.js +2200 -1451
- data/lib/generate_entities.rb +18 -10
- data/lib/generate_models.rb +27 -19
- data/lib/generate_patients.rb +1 -1
- data/modelinfo/qdm-modelinfo-5.6.xml +1102 -0
- data/package.json +5 -5
- data/templates/models_template.rb.erb +3 -1
- data/templates/mongoose_template.js.erb +9 -2
- data/templates/patient_template.js.erb +25 -0
- data/yarn.lock +699 -682
- metadata +6 -4
- data/app/assets/javascripts/DeviceApplied.js +0 -48
- data/app/models/qdm/device_applied.rb +0 -19
data/lib/generate_entities.rb
CHANGED
@@ -5,22 +5,23 @@ module QDM
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|
5
5
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# BaseTypeGeneration contains functions to randomly generate basetypes used by PatientGeneration
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6
6
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module EntityGeneration
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7
7
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def self.generate_entities(data_element)
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8
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-
data_element.performer = generate_entity if data_element.respond_to? 'performer'
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9
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-
data_element.recorder = generate_entity if data_element.respond_to? 'recorder'
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10
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-
data_element.requester = generate_entity if data_element.respond_to? 'requester'
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11
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-
data_element.sender = generate_entity if data_element.respond_to? 'sender'
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12
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-
data_element.recipient = generate_entity if data_element.respond_to? 'recipient'
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13
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-
data_element.participant = generate_entity if data_element.respond_to? 'participant'
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14
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-
data_element.prescriber = generate_entity if data_element.respond_to? 'prescriber'
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15
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-
data_element.dispenser = generate_entity if data_element.respond_to? 'dispenser'
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8
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+
data_element.performer = [generate_entity] if data_element.respond_to? 'performer'
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9
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+
data_element.recorder = [generate_entity] if data_element.respond_to? 'recorder'
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10
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+
data_element.requester = [generate_entity] if data_element.respond_to? 'requester'
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11
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+
data_element.sender = [generate_entity] if data_element.respond_to? 'sender'
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12
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+
data_element.recipient = [generate_entity] if data_element.respond_to? 'recipient'
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13
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+
data_element.participant = [generate_entity] if data_element.respond_to? 'participant'
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14
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+
data_element.prescriber = [generate_entity] if data_element.respond_to? 'prescriber'
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15
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+
data_element.dispenser = [generate_entity] if data_element.respond_to? 'dispenser'
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16
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end
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17
17
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18
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def self.generate_entity
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19
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-
case Random.rand(
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19
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+
case Random.rand(5)
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20
20
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when 0 then return generate_patient_entity
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21
21
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when 1 then return generate_care_partner_entity
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22
22
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when 2 then return generate_organization_entity
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23
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when 3 then return generate_practitioner_entity
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24
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+
when 4 then return generate_location_entity
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25
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end
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26
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end
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27
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@@ -40,7 +41,7 @@ module QDM
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def self.generate_organization_entity
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organization_entity = QDM::Organization.new
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42
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organization_entity.identifier = QDM::BaseTypeGeneration.generate_qdm_id
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43
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-
organization_entity.
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44
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+
organization_entity.organizationType = QDM::BaseTypeGeneration.generate_code_field
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organization_entity
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end
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47
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@@ -52,5 +53,12 @@ module QDM
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practitioner_entity.qualification = QDM::BaseTypeGeneration.generate_code_field
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practitioner_entity
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end
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+
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+
def self.generate_location_entity
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58
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location_entity = QDM::Location.new
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59
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+
location_entity.identifier = QDM::BaseTypeGeneration.generate_qdm_id
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60
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+
location_entity.locationType = QDM::BaseTypeGeneration.generate_code_field
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+
location_entity
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+
end
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55
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end
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end
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data/lib/generate_models.rb
CHANGED
@@ -62,6 +62,10 @@ TYPE_LOOKUP_JS = {
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'System.Concept': '{}'
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}.stringify_keys!
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64
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+
RESERVED_WORDS = {
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+
'class': 'clazz'
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+
}.stringify_keys!
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68
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+
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65
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###############################################################################
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# Start of modelinfo file parsing
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###############################################################################
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@@ -240,6 +244,7 @@ unless IS_TEST
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contents.gsub!(%r{\/Practitioner.js}, '/attributes/Practitioner.js')
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contents.gsub!(%r{\/ResultComponent.js}, '/attributes/ResultComponent.js')
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contents.gsub!(%r{\/Identifier.js}, '/attributes/Identifier.js')
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+
contents.gsub!(%r{\/Location.js}, '/attributes/Location.js')
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File.open(file_path, 'w') { |file| file.puts contents }
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end
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@@ -265,16 +270,19 @@ Dir.glob(ruby_models_path + '*.rb').each do |file_name|
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contents.gsub!(/field :facilityLocation, type: Code/, 'field :facilityLocation, type: QDM::FacilityLocation')
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# Make Entity subclasses of type QDM::Entity
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-
contents.gsub!(/field :participant/, "
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-
contents.gsub!(/field :sender/, "
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270
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-
contents.gsub!(/field :recipient/, "
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-
contents.gsub!(/field :recorder/, "
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-
contents.gsub!(/field :performer/, "
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contents.gsub!(/field :requester/, "
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-
contents.gsub!(/field :prescriber/, "
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-
contents.gsub!(/field :dispenser/, "
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273
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contents.gsub!(/field :participant/, "embeds_many :participant, class_name: 'QDM::Entity'")
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274
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+
contents.gsub!(/field :sender/, "embeds_many :sender, class_name: 'QDM::Entity'")
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275
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+
contents.gsub!(/field :recipient/, "embeds_many :recipient, class_name: 'QDM::Entity'")
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276
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+
contents.gsub!(/field :recorder/, "embeds_many :recorder, class_name: 'QDM::Entity'")
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277
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+
contents.gsub!(/field :performer/, "embeds_many :performer, class_name: 'QDM::Entity'")
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+
contents.gsub!(/field :requester/, "embeds_many :requester, class_name: 'QDM::Entity'")
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279
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contents.gsub!(/field :prescriber/, "embeds_many :prescriber, class_name: 'QDM::Entity'")
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contents.gsub!(/field :dispenser/, "embeds_many :dispenser, class_name: 'QDM::Entity'")
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contents.gsub!(/field :identifier, type: Identifier/, "embeds_one :identifier, class_name: 'QDM::Identifier'")
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# EncounterPerformed
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contents.gsub!(/field :class/, 'field :clazz')
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+
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File.open(file_name, 'w') { |file| file.puts contents }
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end
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@@ -293,14 +301,14 @@ Dir.glob(js_models_path + '*.js').each do |file_name|
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contents.gsub!(/components: \[\]/, 'components: [ComponentSchema]')
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contents.gsub!(/component: Code/, 'component: ComponentSchema')
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contents.gsub!(/diagnoses: \[\]/, 'diagnoses: [DiagnosisComponentSchema]')
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-
contents.gsub!(/sender: Any/, 'sender: AnyEntity')
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contents.gsub!(/recipient: Any/, 'recipient: AnyEntity')
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contents.gsub!(/participant: Any/, 'participant: AnyEntity')
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contents.gsub!(/recorder: Any/, 'recorder: AnyEntity')
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contents.gsub!(/performer: Any/, 'performer: AnyEntity')
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contents.gsub!(/requester: Any/, 'requester: AnyEntity')
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contents.gsub!(/prescriber: Any/, 'prescriber: AnyEntity')
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-
contents.gsub!(/dispenser: Any/, 'dispenser: AnyEntity')
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+
contents.gsub!(/sender: Any/, 'sender: [AnyEntity]')
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305
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+
contents.gsub!(/recipient: Any/, 'recipient: [AnyEntity]')
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306
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+
contents.gsub!(/participant: Any/, 'participant: [AnyEntity]')
|
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contents.gsub!(/recorder: Any/, 'recorder: [AnyEntity]')
|
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+
contents.gsub!(/performer: Any/, 'performer: [AnyEntity]')
|
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+
contents.gsub!(/requester: Any/, 'requester: [AnyEntity]')
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contents.gsub!(/prescriber: Any/, 'prescriber: [AnyEntity]')
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+
contents.gsub!(/dispenser: Any/, 'dispenser: [AnyEntity]')
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contents.gsub!(/relatedTo: \[\]/, 'relatedTo: [String]')
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305
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306
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File.open(file_name, 'w') { |file| file.puts contents }
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@@ -325,15 +333,15 @@ Dir.glob(ruby_models_path + '*.rb').each do |file_name|
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325
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File.open(file_name, 'w') { |file| file.puts contents }
|
326
334
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end
|
327
335
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328
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-
types_not_inherited_by_data_element = ['/patient.rb', '/identifier.rb', '/component.rb', '/facility_location.rb', '/entity.rb', '/organization.rb', '/patient_entity.rb', '/practitioner.rb', '/care_partner.rb', '/diagnosis_component.rb', '/result_component.rb']
|
336
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+
types_not_inherited_by_data_element = ['/patient.rb', '/identifier.rb', '/component.rb', '/facility_location.rb', '/entity.rb', '/organization.rb', '/patient_entity.rb', '/practitioner.rb', '/care_partner.rb', '/location.rb', '/diagnosis_component.rb', '/result_component.rb']
|
329
337
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types_inherited_by_attribute = ['/component', '/facility_location', '/entity', '/diagnosis_component', '/identifier']
|
330
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-
types_inherited_by_entity = ['/patient_entity', '/care_partner', '/practitioner', '/organization']
|
338
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+
types_inherited_by_entity = ['/patient_entity', '/care_partner', '/practitioner', '/organization', '/location']
|
331
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types_inherited_by_component = ['/result_component']
|
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340
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333
341
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# Set embedded in for datatypes
|
334
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Dir.glob(ruby_models_path + '*.rb').each do |file_name|
|
335
343
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contents = File.read(file_name)
|
336
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-
if ['entity.rb', 'organization.rb', 'patient_entity.rb', 'practitioner.rb', 'care_partner.rb'].any? { |sub_string| sub_string.include?(File.basename(file_name)) }
|
344
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+
if ['entity.rb', 'organization.rb', 'patient_entity.rb', 'practitioner.rb', 'care_partner.rb', 'location.rb'].any? { |sub_string| sub_string.include?(File.basename(file_name)) }
|
337
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contents.gsub!(/ include Mongoid::Document\n/, " include Mongoid::Document\n embedded_in :data_element\n")
|
338
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File.open(file_name, 'w') { |file| file.puts contents }
|
339
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end
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data/lib/generate_patients.rb
CHANGED
@@ -9,7 +9,7 @@ module QDM
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|
9
9
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module PatientGeneration
|
10
10
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# Generates patient(s) with fully-loaded dataElements if new_patient_for_each_type is false then a
|
11
11
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# single patient will be returned that has every data element on it
|
12
|
-
def self.generate_exhaustive_data_element_patients(new_patient_for_each_type = true, model_info_file = 'qdm-modelinfo-5.
|
12
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+
def self.generate_exhaustive_data_element_patients(new_patient_for_each_type = true, model_info_file = 'qdm-modelinfo-5.6.xml')
|
13
13
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datatypes = get_datatypes(File.join(File.dirname(__FILE__), "../modelinfo/#{model_info_file}"))
|
14
14
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patients = []
|
15
15
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cqm_patient = nil
|