cqm-models 0.7.2
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- checksums.yaml +7 -0
- data/.eslintignore +1 -0
- data/.eslintrc.json +26 -0
- data/.github/PULL_REQUEST_TEMPLATE.md +32 -0
- data/.gitignore +21 -0
- data/.rspec +2 -0
- data/.rubocop.yml +42 -0
- data/.travis.yml +21 -0
- data/Gemfile +5 -0
- data/LICENSE.txt +201 -0
- data/README.md +26 -0
- data/Rakefile +12 -0
- data/app/assets/javascripts/AdverseEvent.js +27 -0
- data/app/assets/javascripts/AllDataElements.js +120 -0
- data/app/assets/javascripts/AllergyIntolerance.js +27 -0
- data/app/assets/javascripts/AssessmentPerformed.js +30 -0
- data/app/assets/javascripts/AssessmentRecommended.js +27 -0
- data/app/assets/javascripts/CareGoal.js +25 -0
- data/app/assets/javascripts/CommunicationFromPatientToProvider.js +26 -0
- data/app/assets/javascripts/CommunicationFromProviderToPatient.js +26 -0
- data/app/assets/javascripts/CommunicationFromProviderToProvider.js +26 -0
- data/app/assets/javascripts/Component.js +22 -0
- data/app/assets/javascripts/Concept.js +14 -0
- data/app/assets/javascripts/DeviceApplied.js +29 -0
- data/app/assets/javascripts/DeviceOrder.js +26 -0
- data/app/assets/javascripts/DeviceRecommended.js +26 -0
- data/app/assets/javascripts/Diagnosis.js +27 -0
- data/app/assets/javascripts/DiagnosticStudyOrder.js +27 -0
- data/app/assets/javascripts/DiagnosticStudyPerformed.js +33 -0
- data/app/assets/javascripts/DiagnosticStudyRecommended.js +27 -0
- data/app/assets/javascripts/EncounterOrder.js +27 -0
- data/app/assets/javascripts/EncounterPerformed.js +32 -0
- data/app/assets/javascripts/EncounterRecommended.js +27 -0
- data/app/assets/javascripts/FacilityLocation.js +22 -0
- data/app/assets/javascripts/FamilyHistory.js +25 -0
- data/app/assets/javascripts/Id.js +22 -0
- data/app/assets/javascripts/ImmunizationAdministered.js +30 -0
- data/app/assets/javascripts/ImmunizationOrder.js +30 -0
- data/app/assets/javascripts/InterventionOrder.js +26 -0
- data/app/assets/javascripts/InterventionPerformed.js +29 -0
- data/app/assets/javascripts/InterventionRecommended.js +26 -0
- data/app/assets/javascripts/LaboratoryTestOrder.js +27 -0
- data/app/assets/javascripts/LaboratoryTestPerformed.js +33 -0
- data/app/assets/javascripts/LaboratoryTestRecommended.js +27 -0
- data/app/assets/javascripts/Measure.js +76 -0
- data/app/assets/javascripts/MeasurePackage.js +20 -0
- data/app/assets/javascripts/MedicationActive.js +28 -0
- data/app/assets/javascripts/MedicationAdministered.js +31 -0
- data/app/assets/javascripts/MedicationDischarge.js +30 -0
- data/app/assets/javascripts/MedicationDispensed.js +31 -0
- data/app/assets/javascripts/MedicationOrder.js +34 -0
- data/app/assets/javascripts/Participation.js +21 -0
- data/app/assets/javascripts/Patient.js +248 -0
- data/app/assets/javascripts/PatientCareExperience.js +23 -0
- data/app/assets/javascripts/PatientCharacteristic.js +23 -0
- data/app/assets/javascripts/PatientCharacteristicBirthdate.js +24 -0
- data/app/assets/javascripts/PatientCharacteristicClinicalTrialParticipant.js +26 -0
- data/app/assets/javascripts/PatientCharacteristicEthnicity.js +23 -0
- data/app/assets/javascripts/PatientCharacteristicExpired.js +25 -0
- data/app/assets/javascripts/PatientCharacteristicPayer.js +24 -0
- data/app/assets/javascripts/PatientCharacteristicRace.js +23 -0
- data/app/assets/javascripts/PatientCharacteristicSex.js +23 -0
- data/app/assets/javascripts/PhysicalExamOrder.js +28 -0
- data/app/assets/javascripts/PhysicalExamPerformed.js +31 -0
- data/app/assets/javascripts/PhysicalExamRecommended.js +28 -0
- data/app/assets/javascripts/ProcedureOrder.js +30 -0
- data/app/assets/javascripts/ProcedurePerformed.js +35 -0
- data/app/assets/javascripts/ProcedureRecommended.js +30 -0
- data/app/assets/javascripts/ProviderCareExperience.js +23 -0
- data/app/assets/javascripts/ProviderCharacteristic.js +23 -0
- data/app/assets/javascripts/Ratio.js +22 -0
- data/app/assets/javascripts/Result.js +28 -0
- data/app/assets/javascripts/ResultComponent.js +21 -0
- data/app/assets/javascripts/SubstanceAdministered.js +30 -0
- data/app/assets/javascripts/SubstanceOrder.js +32 -0
- data/app/assets/javascripts/SubstanceRecommended.js +32 -0
- data/app/assets/javascripts/Symptom.js +25 -0
- data/app/assets/javascripts/ValueSet.js +30 -0
- data/app/assets/javascripts/basetypes/Code.js +25 -0
- data/app/assets/javascripts/basetypes/DataElement.js +36 -0
- data/app/assets/javascripts/basetypes/DateTime.js +18 -0
- data/app/assets/javascripts/basetypes/Interval.js +35 -0
- data/app/assets/javascripts/basetypes/Quantity.js +20 -0
- data/app/assets/javascripts/index.js +12 -0
- data/app/models/models.rb +78 -0
- data/app/models/qdm/adverse_event.rb +15 -0
- data/app/models/qdm/allergy_intolerance.rb +15 -0
- data/app/models/qdm/assessment_performed.rb +18 -0
- data/app/models/qdm/assessment_recommended.rb +15 -0
- data/app/models/qdm/basetypes/code.rb +56 -0
- data/app/models/qdm/basetypes/data_element.rb +42 -0
- data/app/models/qdm/basetypes/interval.rb +54 -0
- data/app/models/qdm/basetypes/quantity.rb +52 -0
- data/app/models/qdm/care_goal.rb +13 -0
- data/app/models/qdm/communication_from_patient_to_provider.rb +14 -0
- data/app/models/qdm/communication_from_provider_to_patient.rb +14 -0
- data/app/models/qdm/communication_from_provider_to_provider.rb +14 -0
- data/app/models/qdm/component.rb +10 -0
- data/app/models/qdm/device_applied.rb +17 -0
- data/app/models/qdm/device_order.rb +14 -0
- data/app/models/qdm/device_recommended.rb +14 -0
- data/app/models/qdm/diagnosis.rb +15 -0
- data/app/models/qdm/diagnostic_study_order.rb +15 -0
- data/app/models/qdm/diagnostic_study_performed.rb +21 -0
- data/app/models/qdm/diagnostic_study_recommended.rb +15 -0
- data/app/models/qdm/encounter_order.rb +15 -0
- data/app/models/qdm/encounter_performed.rb +20 -0
- data/app/models/qdm/encounter_recommended.rb +15 -0
- data/app/models/qdm/facility_location.rb +10 -0
- data/app/models/qdm/family_history.rb +13 -0
- data/app/models/qdm/id.rb +10 -0
- data/app/models/qdm/immunization_administered.rb +18 -0
- data/app/models/qdm/immunization_order.rb +18 -0
- data/app/models/qdm/intervention_order.rb +14 -0
- data/app/models/qdm/intervention_performed.rb +17 -0
- data/app/models/qdm/intervention_recommended.rb +14 -0
- data/app/models/qdm/laboratory_test_order.rb +15 -0
- data/app/models/qdm/laboratory_test_performed.rb +21 -0
- data/app/models/qdm/laboratory_test_recommended.rb +15 -0
- data/app/models/qdm/medication_active.rb +16 -0
- data/app/models/qdm/medication_administered.rb +19 -0
- data/app/models/qdm/medication_discharge.rb +18 -0
- data/app/models/qdm/medication_dispensed.rb +19 -0
- data/app/models/qdm/medication_order.rb +22 -0
- data/app/models/qdm/participation.rb +9 -0
- data/app/models/qdm/patient.rb +201 -0
- data/app/models/qdm/patient_care_experience.rb +11 -0
- data/app/models/qdm/patient_characteristic.rb +11 -0
- data/app/models/qdm/patient_characteristic_birthdate.rb +12 -0
- data/app/models/qdm/patient_characteristic_clinical_trial_participant.rb +14 -0
- data/app/models/qdm/patient_characteristic_ethnicity.rb +11 -0
- data/app/models/qdm/patient_characteristic_expired.rb +13 -0
- data/app/models/qdm/patient_characteristic_payer.rb +12 -0
- data/app/models/qdm/patient_characteristic_race.rb +11 -0
- data/app/models/qdm/patient_characteristic_sex.rb +11 -0
- data/app/models/qdm/physical_exam_order.rb +16 -0
- data/app/models/qdm/physical_exam_performed.rb +19 -0
- data/app/models/qdm/physical_exam_recommended.rb +16 -0
- data/app/models/qdm/procedure_order.rb +18 -0
- data/app/models/qdm/procedure_performed.rb +23 -0
- data/app/models/qdm/procedure_recommended.rb +18 -0
- data/app/models/qdm/provider_care_experience.rb +11 -0
- data/app/models/qdm/provider_characteristic.rb +11 -0
- data/app/models/qdm/ratio.rb +10 -0
- data/app/models/qdm/result_component.rb +9 -0
- data/app/models/qdm/substance_administered.rb +18 -0
- data/app/models/qdm/substance_order.rb +20 -0
- data/app/models/qdm/substance_recommended.rb +20 -0
- data/app/models/qdm/symptom.rb +13 -0
- data/app/models/qdm/tacoma/concept.rb +14 -0
- data/app/models/qdm/tacoma/measure.rb +172 -0
- data/app/models/qdm/tacoma/measure_package.rb +10 -0
- data/app/models/qdm/tacoma/valueset.rb +68 -0
- data/bin/console +14 -0
- data/bin/setup +8 -0
- data/bin/validate_dist.sh +17 -0
- data/config/mongoid.yml +6 -0
- data/cqm-models.gemspec +29 -0
- data/data/oids.json +584 -0
- data/dist/index.js +157647 -0
- data/lib/cqm/models.rb +1 -0
- data/lib/generate_models.rb +330 -0
- data/modelinfo/qdm-modelinfo-4.2.xml +515 -0
- data/modelinfo/qdm-modelinfo-4.3.xml +521 -0
- data/modelinfo/qdm-modelinfo-5.0.1.xml +436 -0
- data/modelinfo/qdm-modelinfo-5.0.2.xml +445 -0
- data/modelinfo/qdm-modelinfo-5.0.xml +429 -0
- data/modelinfo/qdm-modelinfo-5.3.xml +524 -0
- data/package.json +34 -0
- data/templates/all_data_elements_template.js.erb +4 -0
- data/templates/index_template.js.erb +12 -0
- data/templates/models_template.rb.erb +21 -0
- data/templates/mongoose_template.js.erb +20 -0
- data/templates/patient_extension.rb.erb +194 -0
- data/templates/patient_template.js.erb +247 -0
- data/tmp/.keep +0 -0
- data/yarn.lock +1901 -0
- metadata +320 -0
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const mongoose = require('mongoose');
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const { DataElementSchema } = require('./basetypes/DataElement');
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const Code = require('./basetypes/Code');
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const Interval = require('./basetypes/Interval');
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const Quantity = require('./basetypes/Quantity');
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const DateTime = require('./basetypes/DateTime');
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const [Number, String] = [
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mongoose.Schema.Types.Number,
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mongoose.Schema.Types.String,
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];
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const LaboratoryTestOrderSchema = DataElementSchema({
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authorDatetime: DateTime,
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reason: Code,
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method: Code,
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negationRationale: Code,
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hqmfOid: { type: String, default: '2.16.840.1.113883.10.20.28.3.41' },
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category: { type: String, default: 'laboratory_test' },
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qdmStatus: { type: String, default: 'order' },
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qdmVersion: { type: String, default: '5.3' },
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_type: { type: String, default: 'LaboratoryTestOrder' },
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});
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module.exports.LaboratoryTestOrderSchema = LaboratoryTestOrderSchema;
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module.exports.LaboratoryTestOrder = mongoose.model('LaboratoryTestOrder', LaboratoryTestOrderSchema);
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const mongoose = require('mongoose');
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const { DataElementSchema } = require('./basetypes/DataElement');
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const Code = require('./basetypes/Code');
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const Interval = require('./basetypes/Interval');
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const Quantity = require('./basetypes/Quantity');
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const DateTime = require('./basetypes/DateTime');
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const [Number, String] = [
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mongoose.Schema.Types.Number,
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mongoose.Schema.Types.String,
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];
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const LaboratoryTestPerformedSchema = DataElementSchema({
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authorDatetime: DateTime,
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relevantPeriod: Interval,
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status: Code,
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method: Code,
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result: {},
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resultDatetime: DateTime,
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reason: Code,
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referenceRange: Interval,
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negationRationale: Code,
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components: [],
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hqmfOid: { type: String, default: '2.16.840.1.113883.10.20.28.3.42' },
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category: { type: String, default: 'laboratory_test' },
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qdmStatus: { type: String, default: 'performed' },
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qdmVersion: { type: String, default: '5.3' },
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_type: { type: String, default: 'LaboratoryTestPerformed' },
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});
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module.exports.LaboratoryTestPerformedSchema = LaboratoryTestPerformedSchema;
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module.exports.LaboratoryTestPerformed = mongoose.model('LaboratoryTestPerformed', LaboratoryTestPerformedSchema);
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const mongoose = require('mongoose');
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const { DataElementSchema } = require('./basetypes/DataElement');
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const Code = require('./basetypes/Code');
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const Interval = require('./basetypes/Interval');
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const Quantity = require('./basetypes/Quantity');
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const DateTime = require('./basetypes/DateTime');
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const [Number, String] = [
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mongoose.Schema.Types.Number,
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mongoose.Schema.Types.String,
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];
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const LaboratoryTestRecommendedSchema = DataElementSchema({
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authorDatetime: DateTime,
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method: Code,
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reason: Code,
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negationRationale: Code,
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hqmfOid: { type: String, default: '2.16.840.1.113883.10.20.28.3.43' },
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category: { type: String, default: 'laboratory_test' },
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qdmStatus: { type: String, default: 'recommended' },
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qdmVersion: { type: String, default: '5.3' },
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_type: { type: String, default: 'LaboratoryTestRecommended' },
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});
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module.exports.LaboratoryTestRecommendedSchema = LaboratoryTestRecommendedSchema;
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module.exports.LaboratoryTestRecommended = mongoose.model('LaboratoryTestRecommended', LaboratoryTestRecommendedSchema);
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const mongoose = require('mongoose');
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const Code = require('./basetypes/Code');
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const Interval = require('./basetypes/Interval');
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const Quantity = require('./basetypes/Quantity');
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const [mNumber, mString, mBoolean, Mixed, ObjectId, mDate] = [
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mongoose.Schema.Types.Number,
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mongoose.Schema.Types.String,
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mongoose.Schema.Types.Boolean,
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mongoose.Schema.Types.Mixed,
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mongoose.Schema.Types.ObjectId,
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mongoose.Schema.Types.Date,
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];
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const MeasureSchema = mongoose.Schema(
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{
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// ID/other measure information
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id: mString,
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measure_id: mString,
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hqmf_id: mString,
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hqmf_set_id: mString,
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hqmf_version_number: mNumber,
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cms_id: mString,
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title: mString,
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description: mString,
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type: mString,
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category: { type: mString, default: 'Uncategorized' },
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// Measure type variables
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episode_of_care: mBoolean,
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continuous_constiable: mBoolean,
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episode_ids: [],
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// Publishing data (used by Bonnie)
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published: mBoolean,
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publish_date: mDate,
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version: mNumber,
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// ELM/CQL Measure-logic related data
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elm_annotations: Mixed,
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cql: [mString],
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elm: [Mixed],
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main_cql_library: mString,
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cql_statement_dependencies: Mixed,
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// HQMF/Tacoma-specific Measure-logic related data
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population_criteria: Mixed,
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data_criteria: Mixed,
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source_data_criteria: Mixed,
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measure_period: Interval,
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measure_attributes: [],
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populations: [Mixed],
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populations_cql_map: Mixed,
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observations: [Mixed],
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value_sets: [{ type: ObjectId, ref: 'ValueSet' }],
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complexity: Mixed, // Bonnie-specific?
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// Relations to other model classes
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user: { type: ObjectId, ref: 'User', index: true }, // Bonnie-specific
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bundle: { type: ObjectId, ref: 'Bundle' }, // Cypress-specific, but used in Bonnie-bundler as well
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package: { type: ObjectId, ref: 'MeasurePackage' }, // Bonnie specific
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},
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// Options
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{
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timestamps: { createdAt: 'created_at', updatedAt: 'updated_at' }, // These are the Mongoid conventions for timestamps
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}
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);
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MeasureSchema.virtual('ALL_POPULATION_CODES').get(() => ['STRAT', 'IPP', 'DENOM', 'DENEX', 'NUMER', 'NUMEX', 'DENEXCEP', 'MSRPOPL', 'OBSERV', 'MSRPOPLEX']);
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MeasureSchema.virtual('cqlSkipStatements').get(() => ['SDE Ethnicity', 'SDE Payer', 'SDE Race', 'SDE Sex']);
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module.exports.MeasureSchema = MeasureSchema;
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module.exports.Measure = mongoose.model('measure', MeasureSchema);
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const mongoose = require('mongoose');
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const [mBuffer, ObjectId] = [
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mongoose.Schema.Types.Buffer,
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mongoose.Schema.Types.ObjectId,
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];
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const MeasurePackageSchema = mongoose.Schema(
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{
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file: mBuffer,
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measure: { type: ObjectId, ref: 'Measure' },
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},
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// Options
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{
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timestamps: { createdAt: 'created_at', updatedAt: 'updated_at' },
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}
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);
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module.exports.MeasurePackageSchema = MeasurePackageSchema;
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module.exports.MeasurePackage = mongoose.model('measure_package', MeasurePackageSchema);
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const mongoose = require('mongoose');
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const { DataElementSchema } = require('./basetypes/DataElement');
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const Code = require('./basetypes/Code');
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const Interval = require('./basetypes/Interval');
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+
const Quantity = require('./basetypes/Quantity');
|
6
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+
const DateTime = require('./basetypes/DateTime');
|
7
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+
|
8
|
+
const [Number, String] = [
|
9
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+
mongoose.Schema.Types.Number,
|
10
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mongoose.Schema.Types.String,
|
11
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+
];
|
12
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+
|
13
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+
const MedicationActiveSchema = DataElementSchema({
|
14
|
+
relevantPeriod: Interval,
|
15
|
+
dosage: Quantity,
|
16
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+
supply: Quantity,
|
17
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+
frequency: Code,
|
18
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+
route: Code,
|
19
|
+
hqmfOid: { type: String, default: '2.16.840.1.113883.10.20.28.3.44' },
|
20
|
+
category: { type: String, default: 'medication' },
|
21
|
+
qdmStatus: { type: String, default: 'active' },
|
22
|
+
qdmVersion: { type: String, default: '5.3' },
|
23
|
+
_type: { type: String, default: 'MedicationActive' },
|
24
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+
|
25
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+
});
|
26
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+
|
27
|
+
module.exports.MedicationActiveSchema = MedicationActiveSchema;
|
28
|
+
module.exports.MedicationActive = mongoose.model('MedicationActive', MedicationActiveSchema);
|
@@ -0,0 +1,31 @@
|
|
1
|
+
const mongoose = require('mongoose');
|
2
|
+
const { DataElementSchema } = require('./basetypes/DataElement');
|
3
|
+
const Code = require('./basetypes/Code');
|
4
|
+
const Interval = require('./basetypes/Interval');
|
5
|
+
const Quantity = require('./basetypes/Quantity');
|
6
|
+
const DateTime = require('./basetypes/DateTime');
|
7
|
+
|
8
|
+
const [Number, String] = [
|
9
|
+
mongoose.Schema.Types.Number,
|
10
|
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mongoose.Schema.Types.String,
|
11
|
+
];
|
12
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+
|
13
|
+
const MedicationAdministeredSchema = DataElementSchema({
|
14
|
+
authorDatetime: DateTime,
|
15
|
+
relevantPeriod: Interval,
|
16
|
+
dosage: Quantity,
|
17
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+
supply: Quantity,
|
18
|
+
frequency: Code,
|
19
|
+
route: Code,
|
20
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+
reason: Code,
|
21
|
+
negationRationale: Code,
|
22
|
+
hqmfOid: { type: String, default: '2.16.840.1.113883.10.20.28.3.45' },
|
23
|
+
category: { type: String, default: 'medication' },
|
24
|
+
qdmStatus: { type: String, default: 'administered' },
|
25
|
+
qdmVersion: { type: String, default: '5.3' },
|
26
|
+
_type: { type: String, default: 'MedicationAdministered' },
|
27
|
+
|
28
|
+
});
|
29
|
+
|
30
|
+
module.exports.MedicationAdministeredSchema = MedicationAdministeredSchema;
|
31
|
+
module.exports.MedicationAdministered = mongoose.model('MedicationAdministered', MedicationAdministeredSchema);
|
@@ -0,0 +1,30 @@
|
|
1
|
+
const mongoose = require('mongoose');
|
2
|
+
const { DataElementSchema } = require('./basetypes/DataElement');
|
3
|
+
const Code = require('./basetypes/Code');
|
4
|
+
const Interval = require('./basetypes/Interval');
|
5
|
+
const Quantity = require('./basetypes/Quantity');
|
6
|
+
const DateTime = require('./basetypes/DateTime');
|
7
|
+
|
8
|
+
const [Number, String] = [
|
9
|
+
mongoose.Schema.Types.Number,
|
10
|
+
mongoose.Schema.Types.String,
|
11
|
+
];
|
12
|
+
|
13
|
+
const MedicationDischargeSchema = DataElementSchema({
|
14
|
+
authorDatetime: DateTime,
|
15
|
+
refills: Number,
|
16
|
+
dosage: Quantity,
|
17
|
+
supply: Quantity,
|
18
|
+
frequency: Code,
|
19
|
+
route: Code,
|
20
|
+
negationRationale: Code,
|
21
|
+
hqmfOid: { type: String, default: '2.16.840.1.113883.10.20.28.3.48' },
|
22
|
+
category: { type: String, default: 'medication' },
|
23
|
+
qdmStatus: { type: String, default: 'discharge' },
|
24
|
+
qdmVersion: { type: String, default: '5.3' },
|
25
|
+
_type: { type: String, default: 'MedicationDischarge' },
|
26
|
+
|
27
|
+
});
|
28
|
+
|
29
|
+
module.exports.MedicationDischargeSchema = MedicationDischargeSchema;
|
30
|
+
module.exports.MedicationDischarge = mongoose.model('MedicationDischarge', MedicationDischargeSchema);
|
@@ -0,0 +1,31 @@
|
|
1
|
+
const mongoose = require('mongoose');
|
2
|
+
const { DataElementSchema } = require('./basetypes/DataElement');
|
3
|
+
const Code = require('./basetypes/Code');
|
4
|
+
const Interval = require('./basetypes/Interval');
|
5
|
+
const Quantity = require('./basetypes/Quantity');
|
6
|
+
const DateTime = require('./basetypes/DateTime');
|
7
|
+
|
8
|
+
const [Number, String] = [
|
9
|
+
mongoose.Schema.Types.Number,
|
10
|
+
mongoose.Schema.Types.String,
|
11
|
+
];
|
12
|
+
|
13
|
+
const MedicationDispensedSchema = DataElementSchema({
|
14
|
+
authorDatetime: DateTime,
|
15
|
+
relevantPeriod: Interval,
|
16
|
+
refills: Number,
|
17
|
+
dosage: Quantity,
|
18
|
+
supply: Quantity,
|
19
|
+
frequency: Code,
|
20
|
+
route: Code,
|
21
|
+
negationRationale: Code,
|
22
|
+
hqmfOid: { type: String, default: '2.16.840.1.113883.10.20.28.3.49' },
|
23
|
+
category: { type: String, default: 'medication' },
|
24
|
+
qdmStatus: { type: String, default: 'dispensed' },
|
25
|
+
qdmVersion: { type: String, default: '5.3' },
|
26
|
+
_type: { type: String, default: 'MedicationDispensed' },
|
27
|
+
|
28
|
+
});
|
29
|
+
|
30
|
+
module.exports.MedicationDispensedSchema = MedicationDispensedSchema;
|
31
|
+
module.exports.MedicationDispensed = mongoose.model('MedicationDispensed', MedicationDispensedSchema);
|
@@ -0,0 +1,34 @@
|
|
1
|
+
const mongoose = require('mongoose');
|
2
|
+
const { DataElementSchema } = require('./basetypes/DataElement');
|
3
|
+
const Code = require('./basetypes/Code');
|
4
|
+
const Interval = require('./basetypes/Interval');
|
5
|
+
const Quantity = require('./basetypes/Quantity');
|
6
|
+
const DateTime = require('./basetypes/DateTime');
|
7
|
+
|
8
|
+
const [Number, String] = [
|
9
|
+
mongoose.Schema.Types.Number,
|
10
|
+
mongoose.Schema.Types.String,
|
11
|
+
];
|
12
|
+
|
13
|
+
const MedicationOrderSchema = DataElementSchema({
|
14
|
+
activeDatetime: DateTime,
|
15
|
+
relevantPeriod: Interval,
|
16
|
+
authorDatetime: DateTime,
|
17
|
+
refills: Number,
|
18
|
+
dosage: Quantity,
|
19
|
+
supply: Quantity,
|
20
|
+
frequency: Code,
|
21
|
+
route: Code,
|
22
|
+
method: Code,
|
23
|
+
reason: Code,
|
24
|
+
negationRationale: Code,
|
25
|
+
hqmfOid: { type: String, default: '2.16.840.1.113883.10.20.28.3.51' },
|
26
|
+
category: { type: String, default: 'medication' },
|
27
|
+
qdmStatus: { type: String, default: 'order' },
|
28
|
+
qdmVersion: { type: String, default: '5.3' },
|
29
|
+
_type: { type: String, default: 'MedicationOrder' },
|
30
|
+
|
31
|
+
});
|
32
|
+
|
33
|
+
module.exports.MedicationOrderSchema = MedicationOrderSchema;
|
34
|
+
module.exports.MedicationOrder = mongoose.model('MedicationOrder', MedicationOrderSchema);
|
@@ -0,0 +1,21 @@
|
|
1
|
+
const mongoose = require('mongoose');
|
2
|
+
const { DataElementSchema } = require('./basetypes/DataElement');
|
3
|
+
const Code = require('./basetypes/Code');
|
4
|
+
const Interval = require('./basetypes/Interval');
|
5
|
+
const Quantity = require('./basetypes/Quantity');
|
6
|
+
const DateTime = require('./basetypes/DateTime');
|
7
|
+
|
8
|
+
const [Number, String] = [
|
9
|
+
mongoose.Schema.Types.Number,
|
10
|
+
mongoose.Schema.Types.String,
|
11
|
+
];
|
12
|
+
|
13
|
+
const ParticipationSchema = DataElementSchema({
|
14
|
+
participationPeriod: Interval,
|
15
|
+
qdmVersion: { type: String, default: '5.3' },
|
16
|
+
_type: { type: String, default: 'Participation' },
|
17
|
+
|
18
|
+
});
|
19
|
+
|
20
|
+
module.exports.ParticipationSchema = ParticipationSchema;
|
21
|
+
module.exports.Participation = mongoose.model('Participation', ParticipationSchema);
|
@@ -0,0 +1,248 @@
|
|
1
|
+
const mongoose = require('mongoose');
|
2
|
+
const Code = require('./basetypes/Code');
|
3
|
+
const Interval = require('./basetypes/Interval');
|
4
|
+
const Quantity = require('./basetypes/Quantity');
|
5
|
+
const DateTime = require('./basetypes/DateTime');
|
6
|
+
const AllDataElements = require('./AllDataElements');
|
7
|
+
|
8
|
+
const [Schema, Number, String] = [
|
9
|
+
mongoose.Schema,
|
10
|
+
mongoose.Schema.Types.Number,
|
11
|
+
mongoose.Schema.Types.String,
|
12
|
+
];
|
13
|
+
|
14
|
+
const PatientSchema = new Schema({
|
15
|
+
birthDatetime: DateTime,
|
16
|
+
qdmVersion: { type: String, default: '5.3' },
|
17
|
+
_type: { type: String, default: 'Patient' },
|
18
|
+
|
19
|
+
givenNames: [String],
|
20
|
+
familyName: String,
|
21
|
+
bundleId: String,
|
22
|
+
// These are the "data criteria", or QDM datatype elements that exist on a
|
23
|
+
// patient.
|
24
|
+
dataElements: [],
|
25
|
+
// This field is for application specific information only. If both Bonnie
|
26
|
+
// Cypress use a common field, it should be made a field on this model,
|
27
|
+
// and not put into extendedData.
|
28
|
+
extendedData: {},
|
29
|
+
}, { id: false });
|
30
|
+
|
31
|
+
// After initialization of a Patient model, initialize every individual data element
|
32
|
+
// to its respective Mongoose Model
|
33
|
+
PatientSchema.methods.initializeDataElements = function initializeDataElements() {
|
34
|
+
let typeStripped;
|
35
|
+
const dataElementsInit = [];
|
36
|
+
this.dataElements.forEach((element) => {
|
37
|
+
typeStripped = element._type.replace(/QDM::/, '');
|
38
|
+
if (typeStripped in AllDataElements) {
|
39
|
+
dataElementsInit.push(AllDataElements[typeStripped](element));
|
40
|
+
} else {
|
41
|
+
dataElementsInit.push(element);
|
42
|
+
}
|
43
|
+
});
|
44
|
+
this.set({ dataElements: dataElementsInit });
|
45
|
+
};
|
46
|
+
|
47
|
+
PatientSchema.queue('initializeDataElements');
|
48
|
+
|
49
|
+
PatientSchema.methods.id = function id() {
|
50
|
+
return this._id;
|
51
|
+
};
|
52
|
+
|
53
|
+
// Returns an array of elements that exist on this patient, that
|
54
|
+
// match the given HQMF data criteria OID.
|
55
|
+
PatientSchema.methods.getByHqmfOid = function getByHqmfOid(hqmfOid) {
|
56
|
+
return this.dataElements.filter(element => element.hqmfOid === hqmfOid);
|
57
|
+
};
|
58
|
+
|
59
|
+
// Returns an array of elements that exist on this patient, that
|
60
|
+
// match the given QRDA data criteria OID.
|
61
|
+
PatientSchema.methods.getByQrdaOid = function getByQrdaOid(qrdaOid) {
|
62
|
+
return this.dataElements.filter(element => element.qrdaOid === qrdaOid);
|
63
|
+
};
|
64
|
+
|
65
|
+
// Returns an array of elements that exist on this patient. Optionally
|
66
|
+
// takes a category, which returns all elements of that QDM category.
|
67
|
+
// Example: patient.getDataElements(category = 'encounters') will return
|
68
|
+
// all Encounter QDM data types active on the patient.
|
69
|
+
PatientSchema.methods.getDataElements = function getDataElements(params) {
|
70
|
+
if (params.category && params.qdmStatus) {
|
71
|
+
return this.dataElements.filter(element => (element.category === params.category) && (element.qdmStatus === params.qdmStatus));
|
72
|
+
} else if (params.category) {
|
73
|
+
return this.dataElements.filter(element => element.category === params.category);
|
74
|
+
}
|
75
|
+
return this.dataElements;
|
76
|
+
};
|
77
|
+
|
78
|
+
// Returns an array of dataElements that exist on the patient, queried by
|
79
|
+
// QDM profile
|
80
|
+
PatientSchema.methods.getByProfile = function getByProfile(profile, isNegated = null) {
|
81
|
+
if (isNegated === true) {
|
82
|
+
return this.dataElements.filter(element => element._type === `QDM::${profile}` && (typeof element.negationRationale !== 'undefined' && element.negationRationale != null));
|
83
|
+
} else if (isNegated === false) {
|
84
|
+
return this.dataElements.filter(element => element._type === `QDM::${profile}` && (typeof element.negationRationale === 'undefined' || element.negationRationale == null));
|
85
|
+
}
|
86
|
+
return this.dataElements.filter(element => element._type === `QDM::${profile}`);
|
87
|
+
};
|
88
|
+
|
89
|
+
// This method is called by the CQL execution engine on a CQLPatient when
|
90
|
+
// the execution engine wants information on a record. A record could be patient
|
91
|
+
// characteristic information about the patient, or it could be data criteria
|
92
|
+
// that currently exist on this patient (data criteria you drag on a patient
|
93
|
+
// in Bonnie's patient builder).
|
94
|
+
// @param {String} profile - the data criteria requested by the execution engine
|
95
|
+
// @returns {Object}
|
96
|
+
PatientSchema.methods.findRecords = function findRecords(profile) {
|
97
|
+
let profileStripped;
|
98
|
+
if (profile === 'Patient') {
|
99
|
+
// Requested generic patient info
|
100
|
+
return { birthDatetime: this.birthDatetime };
|
101
|
+
} else if (/PatientCharacteristic/.test(profile)) {
|
102
|
+
// Requested a patient characteristic
|
103
|
+
profileStripped = profile.replace(/ *\{[^)]*\} */g, '');
|
104
|
+
return this.getByProfile(profileStripped);
|
105
|
+
} else if (profile != null) {
|
106
|
+
// Requested something else (probably a QDM data type).
|
107
|
+
|
108
|
+
// Strip model details from request. The requested profile string contains
|
109
|
+
// a lot of things we don't need or care about. Example, we might see
|
110
|
+
// something like:
|
111
|
+
// "{urn:healthit-gov:qdm:v5_0_draft}PatientCharacteristicEthnicity"
|
112
|
+
// Where we only care about: "PatientCharacteristicEthnicity".
|
113
|
+
profileStripped = profile.replace(/ *\{[^)]*\} */g, '');
|
114
|
+
|
115
|
+
// Check and handle negation status
|
116
|
+
if (/Positive/.test(profileStripped)) {
|
117
|
+
profileStripped = profileStripped.replace(/Positive/, '');
|
118
|
+
// Since the data criteria is 'Positive', it is not negated.
|
119
|
+
return this.getByProfile(profileStripped, false);
|
120
|
+
} else if (/Negative/.test(profileStripped)) {
|
121
|
+
profileStripped = profileStripped.replace(/Negative/, '');
|
122
|
+
// Since the data criteria is 'Negative', it is negated.
|
123
|
+
return this.getByProfile(profileStripped, true);
|
124
|
+
}
|
125
|
+
// No negation status, proceed normally
|
126
|
+
return this.getByProfile(profileStripped);
|
127
|
+
}
|
128
|
+
return [];
|
129
|
+
};
|
130
|
+
|
131
|
+
PatientSchema.methods.adverse_events = function adverse_events() {
|
132
|
+
return this.getDataElements({ category: 'adverse_event' });
|
133
|
+
};
|
134
|
+
|
135
|
+
PatientSchema.methods.allergies = function allergies() {
|
136
|
+
return this.getDataElements({ category: 'allergy' });
|
137
|
+
};
|
138
|
+
|
139
|
+
PatientSchema.methods.assessments = function assessments() {
|
140
|
+
return this.getDataElements({ category: 'assessment' });
|
141
|
+
};
|
142
|
+
|
143
|
+
PatientSchema.methods.care_experiences = function care_experiences() {
|
144
|
+
return this.getDataElements({ category: 'care_experience' });
|
145
|
+
};
|
146
|
+
|
147
|
+
PatientSchema.methods.care_goals = function care_goals() {
|
148
|
+
return this.getDataElements({ category: 'care_goal' });
|
149
|
+
};
|
150
|
+
|
151
|
+
PatientSchema.methods.communications = function communications() {
|
152
|
+
return this.getDataElements({ category: 'communication' });
|
153
|
+
};
|
154
|
+
|
155
|
+
PatientSchema.methods.conditions = function conditions() {
|
156
|
+
return this.getDataElements({ category: 'condition' });
|
157
|
+
};
|
158
|
+
|
159
|
+
PatientSchema.methods.devices = function devices() {
|
160
|
+
return this.getDataElements({ category: 'device' });
|
161
|
+
};
|
162
|
+
|
163
|
+
PatientSchema.methods.diagnostic_studies = function diagnostic_studies() {
|
164
|
+
return this.getDataElements({ category: 'diagnostic_study' });
|
165
|
+
};
|
166
|
+
|
167
|
+
PatientSchema.methods.encounters = function encounters() {
|
168
|
+
return this.getDataElements({ category: 'encounter' });
|
169
|
+
};
|
170
|
+
|
171
|
+
PatientSchema.methods.family_history = function family_history() {
|
172
|
+
return this.getDataElements({ category: 'family_history' });
|
173
|
+
};
|
174
|
+
|
175
|
+
PatientSchema.methods.functional_statuses = function functional_statuses() {
|
176
|
+
return this.getDataElements({ category: 'functional_status' });
|
177
|
+
};
|
178
|
+
|
179
|
+
PatientSchema.methods.immunizations = function immunizations() {
|
180
|
+
return this.getDataElements({ category: 'immunization' });
|
181
|
+
};
|
182
|
+
|
183
|
+
PatientSchema.methods.interventions = function interventions() {
|
184
|
+
return this.getDataElements({ category: 'intervention' });
|
185
|
+
};
|
186
|
+
|
187
|
+
PatientSchema.methods.laboratory_tests = function laboratory_tests() {
|
188
|
+
return this.getDataElements({ category: 'laboratory_test' });
|
189
|
+
};
|
190
|
+
|
191
|
+
PatientSchema.methods.medical_equipment = function medical_equipment() {
|
192
|
+
return this.getDataElements({ category: 'medical_equipment' });
|
193
|
+
};
|
194
|
+
|
195
|
+
PatientSchema.methods.medications = function medications() {
|
196
|
+
return this.getDataElements({ category: 'medication' });
|
197
|
+
};
|
198
|
+
|
199
|
+
PatientSchema.methods.physical_exams = function physical_exams() {
|
200
|
+
return this.getDataElements({ category: 'physical_exam' });
|
201
|
+
};
|
202
|
+
|
203
|
+
PatientSchema.methods.preferences = function preferences() {
|
204
|
+
return this.getDataElements({ category: 'preference' });
|
205
|
+
};
|
206
|
+
|
207
|
+
PatientSchema.methods.provider_characteristics = function provider_characteristics() {
|
208
|
+
return this.getDataElements({ category: 'provider_characteristic' });
|
209
|
+
};
|
210
|
+
|
211
|
+
PatientSchema.methods.procedures = function procedures() {
|
212
|
+
return this.getDataElements({ category: 'procedure' });
|
213
|
+
};
|
214
|
+
|
215
|
+
PatientSchema.methods.results = function results() {
|
216
|
+
return this.getDataElements({ category: 'result' });
|
217
|
+
};
|
218
|
+
|
219
|
+
PatientSchema.methods.risk_category_assessments = function risk_category_assessments() {
|
220
|
+
return this.getDataElements({ category: 'risk_category_assessment' });
|
221
|
+
};
|
222
|
+
|
223
|
+
PatientSchema.methods.social_history = function social_history() {
|
224
|
+
return this.getDataElements({ category: 'social_history' });
|
225
|
+
};
|
226
|
+
|
227
|
+
PatientSchema.methods.substances = function substances() {
|
228
|
+
return this.getDataElements({ category: 'substance' });
|
229
|
+
};
|
230
|
+
|
231
|
+
PatientSchema.methods.symptoms = function symptoms() {
|
232
|
+
return this.getDataElements({ category: 'symptom' });
|
233
|
+
};
|
234
|
+
|
235
|
+
PatientSchema.methods.system_characteristics = function system_characteristics() {
|
236
|
+
return this.getDataElements({ category: 'system_characteristic' });
|
237
|
+
};
|
238
|
+
|
239
|
+
PatientSchema.methods.transfers = function transfers() {
|
240
|
+
return this.getDataElements({ category: 'transfer' });
|
241
|
+
};
|
242
|
+
|
243
|
+
PatientSchema.methods.vital_signs = function vital_signs() {
|
244
|
+
return this.getDataElements({ category: 'vital_sign' });
|
245
|
+
};
|
246
|
+
|
247
|
+
module.exports.PatientSchema = PatientSchema;
|
248
|
+
module.exports.Patient = mongoose.model('Patient', PatientSchema);
|
@@ -0,0 +1,23 @@
|
|
1
|
+
const mongoose = require('mongoose');
|
2
|
+
const { DataElementSchema } = require('./basetypes/DataElement');
|
3
|
+
const Code = require('./basetypes/Code');
|
4
|
+
const Interval = require('./basetypes/Interval');
|
5
|
+
const Quantity = require('./basetypes/Quantity');
|
6
|
+
const DateTime = require('./basetypes/DateTime');
|
7
|
+
|
8
|
+
const [Number, String] = [
|
9
|
+
mongoose.Schema.Types.Number,
|
10
|
+
mongoose.Schema.Types.String,
|
11
|
+
];
|
12
|
+
|
13
|
+
const PatientCareExperienceSchema = DataElementSchema({
|
14
|
+
authorDatetime: DateTime,
|
15
|
+
hqmfOid: { type: String, default: '2.16.840.1.113883.10.20.28.3.52' },
|
16
|
+
category: { type: String, default: 'care_experience' },
|
17
|
+
qdmVersion: { type: String, default: '5.3' },
|
18
|
+
_type: { type: String, default: 'PatientCareExperience' },
|
19
|
+
|
20
|
+
});
|
21
|
+
|
22
|
+
module.exports.PatientCareExperienceSchema = PatientCareExperienceSchema;
|
23
|
+
module.exports.PatientCareExperience = mongoose.model('PatientCareExperience', PatientCareExperienceSchema);
|
@@ -0,0 +1,23 @@
|
|
1
|
+
const mongoose = require('mongoose');
|
2
|
+
const { DataElementSchema } = require('./basetypes/DataElement');
|
3
|
+
const Code = require('./basetypes/Code');
|
4
|
+
const Interval = require('./basetypes/Interval');
|
5
|
+
const Quantity = require('./basetypes/Quantity');
|
6
|
+
const DateTime = require('./basetypes/DateTime');
|
7
|
+
|
8
|
+
const [Number, String] = [
|
9
|
+
mongoose.Schema.Types.Number,
|
10
|
+
mongoose.Schema.Types.String,
|
11
|
+
];
|
12
|
+
|
13
|
+
const PatientCharacteristicSchema = DataElementSchema({
|
14
|
+
authorDatetime: DateTime,
|
15
|
+
hqmfOid: { type: String, default: '2.16.840.1.113883.10.20.28.3.53' },
|
16
|
+
category: { type: String, default: 'patient_characteristic' },
|
17
|
+
qdmVersion: { type: String, default: '5.3' },
|
18
|
+
_type: { type: String, default: 'PatientCharacteristic' },
|
19
|
+
|
20
|
+
});
|
21
|
+
|
22
|
+
module.exports.PatientCharacteristicSchema = PatientCharacteristicSchema;
|
23
|
+
module.exports.PatientCharacteristic = mongoose.model('PatientCharacteristic', PatientCharacteristicSchema);
|