cqm-models 0.7.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +7 -0
- data/.eslintignore +1 -0
- data/.eslintrc.json +26 -0
- data/.github/PULL_REQUEST_TEMPLATE.md +32 -0
- data/.gitignore +21 -0
- data/.rspec +2 -0
- data/.rubocop.yml +42 -0
- data/.travis.yml +21 -0
- data/Gemfile +5 -0
- data/LICENSE.txt +201 -0
- data/README.md +26 -0
- data/Rakefile +12 -0
- data/app/assets/javascripts/AdverseEvent.js +27 -0
- data/app/assets/javascripts/AllDataElements.js +120 -0
- data/app/assets/javascripts/AllergyIntolerance.js +27 -0
- data/app/assets/javascripts/AssessmentPerformed.js +30 -0
- data/app/assets/javascripts/AssessmentRecommended.js +27 -0
- data/app/assets/javascripts/CareGoal.js +25 -0
- data/app/assets/javascripts/CommunicationFromPatientToProvider.js +26 -0
- data/app/assets/javascripts/CommunicationFromProviderToPatient.js +26 -0
- data/app/assets/javascripts/CommunicationFromProviderToProvider.js +26 -0
- data/app/assets/javascripts/Component.js +22 -0
- data/app/assets/javascripts/Concept.js +14 -0
- data/app/assets/javascripts/DeviceApplied.js +29 -0
- data/app/assets/javascripts/DeviceOrder.js +26 -0
- data/app/assets/javascripts/DeviceRecommended.js +26 -0
- data/app/assets/javascripts/Diagnosis.js +27 -0
- data/app/assets/javascripts/DiagnosticStudyOrder.js +27 -0
- data/app/assets/javascripts/DiagnosticStudyPerformed.js +33 -0
- data/app/assets/javascripts/DiagnosticStudyRecommended.js +27 -0
- data/app/assets/javascripts/EncounterOrder.js +27 -0
- data/app/assets/javascripts/EncounterPerformed.js +32 -0
- data/app/assets/javascripts/EncounterRecommended.js +27 -0
- data/app/assets/javascripts/FacilityLocation.js +22 -0
- data/app/assets/javascripts/FamilyHistory.js +25 -0
- data/app/assets/javascripts/Id.js +22 -0
- data/app/assets/javascripts/ImmunizationAdministered.js +30 -0
- data/app/assets/javascripts/ImmunizationOrder.js +30 -0
- data/app/assets/javascripts/InterventionOrder.js +26 -0
- data/app/assets/javascripts/InterventionPerformed.js +29 -0
- data/app/assets/javascripts/InterventionRecommended.js +26 -0
- data/app/assets/javascripts/LaboratoryTestOrder.js +27 -0
- data/app/assets/javascripts/LaboratoryTestPerformed.js +33 -0
- data/app/assets/javascripts/LaboratoryTestRecommended.js +27 -0
- data/app/assets/javascripts/Measure.js +76 -0
- data/app/assets/javascripts/MeasurePackage.js +20 -0
- data/app/assets/javascripts/MedicationActive.js +28 -0
- data/app/assets/javascripts/MedicationAdministered.js +31 -0
- data/app/assets/javascripts/MedicationDischarge.js +30 -0
- data/app/assets/javascripts/MedicationDispensed.js +31 -0
- data/app/assets/javascripts/MedicationOrder.js +34 -0
- data/app/assets/javascripts/Participation.js +21 -0
- data/app/assets/javascripts/Patient.js +248 -0
- data/app/assets/javascripts/PatientCareExperience.js +23 -0
- data/app/assets/javascripts/PatientCharacteristic.js +23 -0
- data/app/assets/javascripts/PatientCharacteristicBirthdate.js +24 -0
- data/app/assets/javascripts/PatientCharacteristicClinicalTrialParticipant.js +26 -0
- data/app/assets/javascripts/PatientCharacteristicEthnicity.js +23 -0
- data/app/assets/javascripts/PatientCharacteristicExpired.js +25 -0
- data/app/assets/javascripts/PatientCharacteristicPayer.js +24 -0
- data/app/assets/javascripts/PatientCharacteristicRace.js +23 -0
- data/app/assets/javascripts/PatientCharacteristicSex.js +23 -0
- data/app/assets/javascripts/PhysicalExamOrder.js +28 -0
- data/app/assets/javascripts/PhysicalExamPerformed.js +31 -0
- data/app/assets/javascripts/PhysicalExamRecommended.js +28 -0
- data/app/assets/javascripts/ProcedureOrder.js +30 -0
- data/app/assets/javascripts/ProcedurePerformed.js +35 -0
- data/app/assets/javascripts/ProcedureRecommended.js +30 -0
- data/app/assets/javascripts/ProviderCareExperience.js +23 -0
- data/app/assets/javascripts/ProviderCharacteristic.js +23 -0
- data/app/assets/javascripts/Ratio.js +22 -0
- data/app/assets/javascripts/Result.js +28 -0
- data/app/assets/javascripts/ResultComponent.js +21 -0
- data/app/assets/javascripts/SubstanceAdministered.js +30 -0
- data/app/assets/javascripts/SubstanceOrder.js +32 -0
- data/app/assets/javascripts/SubstanceRecommended.js +32 -0
- data/app/assets/javascripts/Symptom.js +25 -0
- data/app/assets/javascripts/ValueSet.js +30 -0
- data/app/assets/javascripts/basetypes/Code.js +25 -0
- data/app/assets/javascripts/basetypes/DataElement.js +36 -0
- data/app/assets/javascripts/basetypes/DateTime.js +18 -0
- data/app/assets/javascripts/basetypes/Interval.js +35 -0
- data/app/assets/javascripts/basetypes/Quantity.js +20 -0
- data/app/assets/javascripts/index.js +12 -0
- data/app/models/models.rb +78 -0
- data/app/models/qdm/adverse_event.rb +15 -0
- data/app/models/qdm/allergy_intolerance.rb +15 -0
- data/app/models/qdm/assessment_performed.rb +18 -0
- data/app/models/qdm/assessment_recommended.rb +15 -0
- data/app/models/qdm/basetypes/code.rb +56 -0
- data/app/models/qdm/basetypes/data_element.rb +42 -0
- data/app/models/qdm/basetypes/interval.rb +54 -0
- data/app/models/qdm/basetypes/quantity.rb +52 -0
- data/app/models/qdm/care_goal.rb +13 -0
- data/app/models/qdm/communication_from_patient_to_provider.rb +14 -0
- data/app/models/qdm/communication_from_provider_to_patient.rb +14 -0
- data/app/models/qdm/communication_from_provider_to_provider.rb +14 -0
- data/app/models/qdm/component.rb +10 -0
- data/app/models/qdm/device_applied.rb +17 -0
- data/app/models/qdm/device_order.rb +14 -0
- data/app/models/qdm/device_recommended.rb +14 -0
- data/app/models/qdm/diagnosis.rb +15 -0
- data/app/models/qdm/diagnostic_study_order.rb +15 -0
- data/app/models/qdm/diagnostic_study_performed.rb +21 -0
- data/app/models/qdm/diagnostic_study_recommended.rb +15 -0
- data/app/models/qdm/encounter_order.rb +15 -0
- data/app/models/qdm/encounter_performed.rb +20 -0
- data/app/models/qdm/encounter_recommended.rb +15 -0
- data/app/models/qdm/facility_location.rb +10 -0
- data/app/models/qdm/family_history.rb +13 -0
- data/app/models/qdm/id.rb +10 -0
- data/app/models/qdm/immunization_administered.rb +18 -0
- data/app/models/qdm/immunization_order.rb +18 -0
- data/app/models/qdm/intervention_order.rb +14 -0
- data/app/models/qdm/intervention_performed.rb +17 -0
- data/app/models/qdm/intervention_recommended.rb +14 -0
- data/app/models/qdm/laboratory_test_order.rb +15 -0
- data/app/models/qdm/laboratory_test_performed.rb +21 -0
- data/app/models/qdm/laboratory_test_recommended.rb +15 -0
- data/app/models/qdm/medication_active.rb +16 -0
- data/app/models/qdm/medication_administered.rb +19 -0
- data/app/models/qdm/medication_discharge.rb +18 -0
- data/app/models/qdm/medication_dispensed.rb +19 -0
- data/app/models/qdm/medication_order.rb +22 -0
- data/app/models/qdm/participation.rb +9 -0
- data/app/models/qdm/patient.rb +201 -0
- data/app/models/qdm/patient_care_experience.rb +11 -0
- data/app/models/qdm/patient_characteristic.rb +11 -0
- data/app/models/qdm/patient_characteristic_birthdate.rb +12 -0
- data/app/models/qdm/patient_characteristic_clinical_trial_participant.rb +14 -0
- data/app/models/qdm/patient_characteristic_ethnicity.rb +11 -0
- data/app/models/qdm/patient_characteristic_expired.rb +13 -0
- data/app/models/qdm/patient_characteristic_payer.rb +12 -0
- data/app/models/qdm/patient_characteristic_race.rb +11 -0
- data/app/models/qdm/patient_characteristic_sex.rb +11 -0
- data/app/models/qdm/physical_exam_order.rb +16 -0
- data/app/models/qdm/physical_exam_performed.rb +19 -0
- data/app/models/qdm/physical_exam_recommended.rb +16 -0
- data/app/models/qdm/procedure_order.rb +18 -0
- data/app/models/qdm/procedure_performed.rb +23 -0
- data/app/models/qdm/procedure_recommended.rb +18 -0
- data/app/models/qdm/provider_care_experience.rb +11 -0
- data/app/models/qdm/provider_characteristic.rb +11 -0
- data/app/models/qdm/ratio.rb +10 -0
- data/app/models/qdm/result_component.rb +9 -0
- data/app/models/qdm/substance_administered.rb +18 -0
- data/app/models/qdm/substance_order.rb +20 -0
- data/app/models/qdm/substance_recommended.rb +20 -0
- data/app/models/qdm/symptom.rb +13 -0
- data/app/models/qdm/tacoma/concept.rb +14 -0
- data/app/models/qdm/tacoma/measure.rb +172 -0
- data/app/models/qdm/tacoma/measure_package.rb +10 -0
- data/app/models/qdm/tacoma/valueset.rb +68 -0
- data/bin/console +14 -0
- data/bin/setup +8 -0
- data/bin/validate_dist.sh +17 -0
- data/config/mongoid.yml +6 -0
- data/cqm-models.gemspec +29 -0
- data/data/oids.json +584 -0
- data/dist/index.js +157647 -0
- data/lib/cqm/models.rb +1 -0
- data/lib/generate_models.rb +330 -0
- data/modelinfo/qdm-modelinfo-4.2.xml +515 -0
- data/modelinfo/qdm-modelinfo-4.3.xml +521 -0
- data/modelinfo/qdm-modelinfo-5.0.1.xml +436 -0
- data/modelinfo/qdm-modelinfo-5.0.2.xml +445 -0
- data/modelinfo/qdm-modelinfo-5.0.xml +429 -0
- data/modelinfo/qdm-modelinfo-5.3.xml +524 -0
- data/package.json +34 -0
- data/templates/all_data_elements_template.js.erb +4 -0
- data/templates/index_template.js.erb +12 -0
- data/templates/models_template.rb.erb +21 -0
- data/templates/mongoose_template.js.erb +20 -0
- data/templates/patient_extension.rb.erb +194 -0
- data/templates/patient_template.js.erb +247 -0
- data/tmp/.keep +0 -0
- data/yarn.lock +1901 -0
- metadata +320 -0
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const mongoose = require('mongoose');
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const { DataElementSchema } = require('./basetypes/DataElement');
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const Code = require('./basetypes/Code');
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const Interval = require('./basetypes/Interval');
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const Quantity = require('./basetypes/Quantity');
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const DateTime = require('./basetypes/DateTime');
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const [Number, String] = [
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mongoose.Schema.Types.Number,
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mongoose.Schema.Types.String,
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];
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const LaboratoryTestOrderSchema = DataElementSchema({
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authorDatetime: DateTime,
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reason: Code,
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method: Code,
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negationRationale: Code,
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hqmfOid: { type: String, default: '2.16.840.1.113883.10.20.28.3.41' },
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category: { type: String, default: 'laboratory_test' },
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qdmStatus: { type: String, default: 'order' },
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qdmVersion: { type: String, default: '5.3' },
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_type: { type: String, default: 'LaboratoryTestOrder' },
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});
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module.exports.LaboratoryTestOrderSchema = LaboratoryTestOrderSchema;
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module.exports.LaboratoryTestOrder = mongoose.model('LaboratoryTestOrder', LaboratoryTestOrderSchema);
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const mongoose = require('mongoose');
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const { DataElementSchema } = require('./basetypes/DataElement');
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const Code = require('./basetypes/Code');
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const Interval = require('./basetypes/Interval');
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const Quantity = require('./basetypes/Quantity');
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const DateTime = require('./basetypes/DateTime');
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const [Number, String] = [
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mongoose.Schema.Types.Number,
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mongoose.Schema.Types.String,
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];
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const LaboratoryTestPerformedSchema = DataElementSchema({
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authorDatetime: DateTime,
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relevantPeriod: Interval,
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status: Code,
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method: Code,
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result: {},
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resultDatetime: DateTime,
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reason: Code,
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referenceRange: Interval,
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negationRationale: Code,
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components: [],
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hqmfOid: { type: String, default: '2.16.840.1.113883.10.20.28.3.42' },
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category: { type: String, default: 'laboratory_test' },
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qdmStatus: { type: String, default: 'performed' },
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qdmVersion: { type: String, default: '5.3' },
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_type: { type: String, default: 'LaboratoryTestPerformed' },
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});
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module.exports.LaboratoryTestPerformedSchema = LaboratoryTestPerformedSchema;
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module.exports.LaboratoryTestPerformed = mongoose.model('LaboratoryTestPerformed', LaboratoryTestPerformedSchema);
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const mongoose = require('mongoose');
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const { DataElementSchema } = require('./basetypes/DataElement');
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const Code = require('./basetypes/Code');
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const Interval = require('./basetypes/Interval');
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const Quantity = require('./basetypes/Quantity');
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const DateTime = require('./basetypes/DateTime');
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const [Number, String] = [
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mongoose.Schema.Types.Number,
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mongoose.Schema.Types.String,
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];
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const LaboratoryTestRecommendedSchema = DataElementSchema({
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authorDatetime: DateTime,
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method: Code,
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reason: Code,
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negationRationale: Code,
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hqmfOid: { type: String, default: '2.16.840.1.113883.10.20.28.3.43' },
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category: { type: String, default: 'laboratory_test' },
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qdmStatus: { type: String, default: 'recommended' },
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qdmVersion: { type: String, default: '5.3' },
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_type: { type: String, default: 'LaboratoryTestRecommended' },
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});
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module.exports.LaboratoryTestRecommendedSchema = LaboratoryTestRecommendedSchema;
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module.exports.LaboratoryTestRecommended = mongoose.model('LaboratoryTestRecommended', LaboratoryTestRecommendedSchema);
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const mongoose = require('mongoose');
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const Code = require('./basetypes/Code');
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const Interval = require('./basetypes/Interval');
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const Quantity = require('./basetypes/Quantity');
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const [mNumber, mString, mBoolean, Mixed, ObjectId, mDate] = [
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mongoose.Schema.Types.Number,
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mongoose.Schema.Types.String,
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mongoose.Schema.Types.Boolean,
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mongoose.Schema.Types.Mixed,
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mongoose.Schema.Types.Date,
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];
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const MeasureSchema = mongoose.Schema(
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{
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// ID/other measure information
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id: mString,
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measure_id: mString,
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hqmf_id: mString,
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hqmf_set_id: mString,
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hqmf_version_number: mNumber,
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cms_id: mString,
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title: mString,
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description: mString,
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type: mString,
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category: { type: mString, default: 'Uncategorized' },
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// Measure type variables
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episode_of_care: mBoolean,
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continuous_constiable: mBoolean,
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episode_ids: [],
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// Publishing data (used by Bonnie)
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published: mBoolean,
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publish_date: mDate,
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version: mNumber,
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// ELM/CQL Measure-logic related data
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elm_annotations: Mixed,
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cql: [mString],
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elm: [Mixed],
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main_cql_library: mString,
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cql_statement_dependencies: Mixed,
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// HQMF/Tacoma-specific Measure-logic related data
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population_criteria: Mixed,
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data_criteria: Mixed,
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source_data_criteria: Mixed,
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measure_period: Interval,
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measure_attributes: [],
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populations: [Mixed],
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populations_cql_map: Mixed,
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observations: [Mixed],
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value_sets: [{ type: ObjectId, ref: 'ValueSet' }],
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complexity: Mixed, // Bonnie-specific?
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// Relations to other model classes
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user: { type: ObjectId, ref: 'User', index: true }, // Bonnie-specific
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bundle: { type: ObjectId, ref: 'Bundle' }, // Cypress-specific, but used in Bonnie-bundler as well
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package: { type: ObjectId, ref: 'MeasurePackage' }, // Bonnie specific
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},
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// Options
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{
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timestamps: { createdAt: 'created_at', updatedAt: 'updated_at' }, // These are the Mongoid conventions for timestamps
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}
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);
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MeasureSchema.virtual('ALL_POPULATION_CODES').get(() => ['STRAT', 'IPP', 'DENOM', 'DENEX', 'NUMER', 'NUMEX', 'DENEXCEP', 'MSRPOPL', 'OBSERV', 'MSRPOPLEX']);
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MeasureSchema.virtual('cqlSkipStatements').get(() => ['SDE Ethnicity', 'SDE Payer', 'SDE Race', 'SDE Sex']);
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module.exports.MeasureSchema = MeasureSchema;
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module.exports.Measure = mongoose.model('measure', MeasureSchema);
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|
1
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+
const mongoose = require('mongoose');
|
|
2
|
+
|
|
3
|
+
const [mBuffer, ObjectId] = [
|
|
4
|
+
mongoose.Schema.Types.Buffer,
|
|
5
|
+
mongoose.Schema.Types.ObjectId,
|
|
6
|
+
];
|
|
7
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+
|
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8
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+
const MeasurePackageSchema = mongoose.Schema(
|
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9
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+
{
|
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+
file: mBuffer,
|
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11
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+
measure: { type: ObjectId, ref: 'Measure' },
|
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+
},
|
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13
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+
// Options
|
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{
|
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15
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+
timestamps: { createdAt: 'created_at', updatedAt: 'updated_at' },
|
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+
}
|
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+
);
|
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+
|
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19
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+
module.exports.MeasurePackageSchema = MeasurePackageSchema;
|
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|
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module.exports.MeasurePackage = mongoose.model('measure_package', MeasurePackageSchema);
|
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@@ -0,0 +1,28 @@
|
|
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1
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+
const mongoose = require('mongoose');
|
|
2
|
+
const { DataElementSchema } = require('./basetypes/DataElement');
|
|
3
|
+
const Code = require('./basetypes/Code');
|
|
4
|
+
const Interval = require('./basetypes/Interval');
|
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5
|
+
const Quantity = require('./basetypes/Quantity');
|
|
6
|
+
const DateTime = require('./basetypes/DateTime');
|
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7
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+
|
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8
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+
const [Number, String] = [
|
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9
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mongoose.Schema.Types.Number,
|
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10
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+
mongoose.Schema.Types.String,
|
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11
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+
];
|
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12
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+
|
|
13
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+
const MedicationActiveSchema = DataElementSchema({
|
|
14
|
+
relevantPeriod: Interval,
|
|
15
|
+
dosage: Quantity,
|
|
16
|
+
supply: Quantity,
|
|
17
|
+
frequency: Code,
|
|
18
|
+
route: Code,
|
|
19
|
+
hqmfOid: { type: String, default: '2.16.840.1.113883.10.20.28.3.44' },
|
|
20
|
+
category: { type: String, default: 'medication' },
|
|
21
|
+
qdmStatus: { type: String, default: 'active' },
|
|
22
|
+
qdmVersion: { type: String, default: '5.3' },
|
|
23
|
+
_type: { type: String, default: 'MedicationActive' },
|
|
24
|
+
|
|
25
|
+
});
|
|
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|
+
|
|
27
|
+
module.exports.MedicationActiveSchema = MedicationActiveSchema;
|
|
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|
+
module.exports.MedicationActive = mongoose.model('MedicationActive', MedicationActiveSchema);
|
|
@@ -0,0 +1,31 @@
|
|
|
1
|
+
const mongoose = require('mongoose');
|
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2
|
+
const { DataElementSchema } = require('./basetypes/DataElement');
|
|
3
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+
const Code = require('./basetypes/Code');
|
|
4
|
+
const Interval = require('./basetypes/Interval');
|
|
5
|
+
const Quantity = require('./basetypes/Quantity');
|
|
6
|
+
const DateTime = require('./basetypes/DateTime');
|
|
7
|
+
|
|
8
|
+
const [Number, String] = [
|
|
9
|
+
mongoose.Schema.Types.Number,
|
|
10
|
+
mongoose.Schema.Types.String,
|
|
11
|
+
];
|
|
12
|
+
|
|
13
|
+
const MedicationAdministeredSchema = DataElementSchema({
|
|
14
|
+
authorDatetime: DateTime,
|
|
15
|
+
relevantPeriod: Interval,
|
|
16
|
+
dosage: Quantity,
|
|
17
|
+
supply: Quantity,
|
|
18
|
+
frequency: Code,
|
|
19
|
+
route: Code,
|
|
20
|
+
reason: Code,
|
|
21
|
+
negationRationale: Code,
|
|
22
|
+
hqmfOid: { type: String, default: '2.16.840.1.113883.10.20.28.3.45' },
|
|
23
|
+
category: { type: String, default: 'medication' },
|
|
24
|
+
qdmStatus: { type: String, default: 'administered' },
|
|
25
|
+
qdmVersion: { type: String, default: '5.3' },
|
|
26
|
+
_type: { type: String, default: 'MedicationAdministered' },
|
|
27
|
+
|
|
28
|
+
});
|
|
29
|
+
|
|
30
|
+
module.exports.MedicationAdministeredSchema = MedicationAdministeredSchema;
|
|
31
|
+
module.exports.MedicationAdministered = mongoose.model('MedicationAdministered', MedicationAdministeredSchema);
|
|
@@ -0,0 +1,30 @@
|
|
|
1
|
+
const mongoose = require('mongoose');
|
|
2
|
+
const { DataElementSchema } = require('./basetypes/DataElement');
|
|
3
|
+
const Code = require('./basetypes/Code');
|
|
4
|
+
const Interval = require('./basetypes/Interval');
|
|
5
|
+
const Quantity = require('./basetypes/Quantity');
|
|
6
|
+
const DateTime = require('./basetypes/DateTime');
|
|
7
|
+
|
|
8
|
+
const [Number, String] = [
|
|
9
|
+
mongoose.Schema.Types.Number,
|
|
10
|
+
mongoose.Schema.Types.String,
|
|
11
|
+
];
|
|
12
|
+
|
|
13
|
+
const MedicationDischargeSchema = DataElementSchema({
|
|
14
|
+
authorDatetime: DateTime,
|
|
15
|
+
refills: Number,
|
|
16
|
+
dosage: Quantity,
|
|
17
|
+
supply: Quantity,
|
|
18
|
+
frequency: Code,
|
|
19
|
+
route: Code,
|
|
20
|
+
negationRationale: Code,
|
|
21
|
+
hqmfOid: { type: String, default: '2.16.840.1.113883.10.20.28.3.48' },
|
|
22
|
+
category: { type: String, default: 'medication' },
|
|
23
|
+
qdmStatus: { type: String, default: 'discharge' },
|
|
24
|
+
qdmVersion: { type: String, default: '5.3' },
|
|
25
|
+
_type: { type: String, default: 'MedicationDischarge' },
|
|
26
|
+
|
|
27
|
+
});
|
|
28
|
+
|
|
29
|
+
module.exports.MedicationDischargeSchema = MedicationDischargeSchema;
|
|
30
|
+
module.exports.MedicationDischarge = mongoose.model('MedicationDischarge', MedicationDischargeSchema);
|
|
@@ -0,0 +1,31 @@
|
|
|
1
|
+
const mongoose = require('mongoose');
|
|
2
|
+
const { DataElementSchema } = require('./basetypes/DataElement');
|
|
3
|
+
const Code = require('./basetypes/Code');
|
|
4
|
+
const Interval = require('./basetypes/Interval');
|
|
5
|
+
const Quantity = require('./basetypes/Quantity');
|
|
6
|
+
const DateTime = require('./basetypes/DateTime');
|
|
7
|
+
|
|
8
|
+
const [Number, String] = [
|
|
9
|
+
mongoose.Schema.Types.Number,
|
|
10
|
+
mongoose.Schema.Types.String,
|
|
11
|
+
];
|
|
12
|
+
|
|
13
|
+
const MedicationDispensedSchema = DataElementSchema({
|
|
14
|
+
authorDatetime: DateTime,
|
|
15
|
+
relevantPeriod: Interval,
|
|
16
|
+
refills: Number,
|
|
17
|
+
dosage: Quantity,
|
|
18
|
+
supply: Quantity,
|
|
19
|
+
frequency: Code,
|
|
20
|
+
route: Code,
|
|
21
|
+
negationRationale: Code,
|
|
22
|
+
hqmfOid: { type: String, default: '2.16.840.1.113883.10.20.28.3.49' },
|
|
23
|
+
category: { type: String, default: 'medication' },
|
|
24
|
+
qdmStatus: { type: String, default: 'dispensed' },
|
|
25
|
+
qdmVersion: { type: String, default: '5.3' },
|
|
26
|
+
_type: { type: String, default: 'MedicationDispensed' },
|
|
27
|
+
|
|
28
|
+
});
|
|
29
|
+
|
|
30
|
+
module.exports.MedicationDispensedSchema = MedicationDispensedSchema;
|
|
31
|
+
module.exports.MedicationDispensed = mongoose.model('MedicationDispensed', MedicationDispensedSchema);
|
|
@@ -0,0 +1,34 @@
|
|
|
1
|
+
const mongoose = require('mongoose');
|
|
2
|
+
const { DataElementSchema } = require('./basetypes/DataElement');
|
|
3
|
+
const Code = require('./basetypes/Code');
|
|
4
|
+
const Interval = require('./basetypes/Interval');
|
|
5
|
+
const Quantity = require('./basetypes/Quantity');
|
|
6
|
+
const DateTime = require('./basetypes/DateTime');
|
|
7
|
+
|
|
8
|
+
const [Number, String] = [
|
|
9
|
+
mongoose.Schema.Types.Number,
|
|
10
|
+
mongoose.Schema.Types.String,
|
|
11
|
+
];
|
|
12
|
+
|
|
13
|
+
const MedicationOrderSchema = DataElementSchema({
|
|
14
|
+
activeDatetime: DateTime,
|
|
15
|
+
relevantPeriod: Interval,
|
|
16
|
+
authorDatetime: DateTime,
|
|
17
|
+
refills: Number,
|
|
18
|
+
dosage: Quantity,
|
|
19
|
+
supply: Quantity,
|
|
20
|
+
frequency: Code,
|
|
21
|
+
route: Code,
|
|
22
|
+
method: Code,
|
|
23
|
+
reason: Code,
|
|
24
|
+
negationRationale: Code,
|
|
25
|
+
hqmfOid: { type: String, default: '2.16.840.1.113883.10.20.28.3.51' },
|
|
26
|
+
category: { type: String, default: 'medication' },
|
|
27
|
+
qdmStatus: { type: String, default: 'order' },
|
|
28
|
+
qdmVersion: { type: String, default: '5.3' },
|
|
29
|
+
_type: { type: String, default: 'MedicationOrder' },
|
|
30
|
+
|
|
31
|
+
});
|
|
32
|
+
|
|
33
|
+
module.exports.MedicationOrderSchema = MedicationOrderSchema;
|
|
34
|
+
module.exports.MedicationOrder = mongoose.model('MedicationOrder', MedicationOrderSchema);
|
|
@@ -0,0 +1,21 @@
|
|
|
1
|
+
const mongoose = require('mongoose');
|
|
2
|
+
const { DataElementSchema } = require('./basetypes/DataElement');
|
|
3
|
+
const Code = require('./basetypes/Code');
|
|
4
|
+
const Interval = require('./basetypes/Interval');
|
|
5
|
+
const Quantity = require('./basetypes/Quantity');
|
|
6
|
+
const DateTime = require('./basetypes/DateTime');
|
|
7
|
+
|
|
8
|
+
const [Number, String] = [
|
|
9
|
+
mongoose.Schema.Types.Number,
|
|
10
|
+
mongoose.Schema.Types.String,
|
|
11
|
+
];
|
|
12
|
+
|
|
13
|
+
const ParticipationSchema = DataElementSchema({
|
|
14
|
+
participationPeriod: Interval,
|
|
15
|
+
qdmVersion: { type: String, default: '5.3' },
|
|
16
|
+
_type: { type: String, default: 'Participation' },
|
|
17
|
+
|
|
18
|
+
});
|
|
19
|
+
|
|
20
|
+
module.exports.ParticipationSchema = ParticipationSchema;
|
|
21
|
+
module.exports.Participation = mongoose.model('Participation', ParticipationSchema);
|
|
@@ -0,0 +1,248 @@
|
|
|
1
|
+
const mongoose = require('mongoose');
|
|
2
|
+
const Code = require('./basetypes/Code');
|
|
3
|
+
const Interval = require('./basetypes/Interval');
|
|
4
|
+
const Quantity = require('./basetypes/Quantity');
|
|
5
|
+
const DateTime = require('./basetypes/DateTime');
|
|
6
|
+
const AllDataElements = require('./AllDataElements');
|
|
7
|
+
|
|
8
|
+
const [Schema, Number, String] = [
|
|
9
|
+
mongoose.Schema,
|
|
10
|
+
mongoose.Schema.Types.Number,
|
|
11
|
+
mongoose.Schema.Types.String,
|
|
12
|
+
];
|
|
13
|
+
|
|
14
|
+
const PatientSchema = new Schema({
|
|
15
|
+
birthDatetime: DateTime,
|
|
16
|
+
qdmVersion: { type: String, default: '5.3' },
|
|
17
|
+
_type: { type: String, default: 'Patient' },
|
|
18
|
+
|
|
19
|
+
givenNames: [String],
|
|
20
|
+
familyName: String,
|
|
21
|
+
bundleId: String,
|
|
22
|
+
// These are the "data criteria", or QDM datatype elements that exist on a
|
|
23
|
+
// patient.
|
|
24
|
+
dataElements: [],
|
|
25
|
+
// This field is for application specific information only. If both Bonnie
|
|
26
|
+
// Cypress use a common field, it should be made a field on this model,
|
|
27
|
+
// and not put into extendedData.
|
|
28
|
+
extendedData: {},
|
|
29
|
+
}, { id: false });
|
|
30
|
+
|
|
31
|
+
// After initialization of a Patient model, initialize every individual data element
|
|
32
|
+
// to its respective Mongoose Model
|
|
33
|
+
PatientSchema.methods.initializeDataElements = function initializeDataElements() {
|
|
34
|
+
let typeStripped;
|
|
35
|
+
const dataElementsInit = [];
|
|
36
|
+
this.dataElements.forEach((element) => {
|
|
37
|
+
typeStripped = element._type.replace(/QDM::/, '');
|
|
38
|
+
if (typeStripped in AllDataElements) {
|
|
39
|
+
dataElementsInit.push(AllDataElements[typeStripped](element));
|
|
40
|
+
} else {
|
|
41
|
+
dataElementsInit.push(element);
|
|
42
|
+
}
|
|
43
|
+
});
|
|
44
|
+
this.set({ dataElements: dataElementsInit });
|
|
45
|
+
};
|
|
46
|
+
|
|
47
|
+
PatientSchema.queue('initializeDataElements');
|
|
48
|
+
|
|
49
|
+
PatientSchema.methods.id = function id() {
|
|
50
|
+
return this._id;
|
|
51
|
+
};
|
|
52
|
+
|
|
53
|
+
// Returns an array of elements that exist on this patient, that
|
|
54
|
+
// match the given HQMF data criteria OID.
|
|
55
|
+
PatientSchema.methods.getByHqmfOid = function getByHqmfOid(hqmfOid) {
|
|
56
|
+
return this.dataElements.filter(element => element.hqmfOid === hqmfOid);
|
|
57
|
+
};
|
|
58
|
+
|
|
59
|
+
// Returns an array of elements that exist on this patient, that
|
|
60
|
+
// match the given QRDA data criteria OID.
|
|
61
|
+
PatientSchema.methods.getByQrdaOid = function getByQrdaOid(qrdaOid) {
|
|
62
|
+
return this.dataElements.filter(element => element.qrdaOid === qrdaOid);
|
|
63
|
+
};
|
|
64
|
+
|
|
65
|
+
// Returns an array of elements that exist on this patient. Optionally
|
|
66
|
+
// takes a category, which returns all elements of that QDM category.
|
|
67
|
+
// Example: patient.getDataElements(category = 'encounters') will return
|
|
68
|
+
// all Encounter QDM data types active on the patient.
|
|
69
|
+
PatientSchema.methods.getDataElements = function getDataElements(params) {
|
|
70
|
+
if (params.category && params.qdmStatus) {
|
|
71
|
+
return this.dataElements.filter(element => (element.category === params.category) && (element.qdmStatus === params.qdmStatus));
|
|
72
|
+
} else if (params.category) {
|
|
73
|
+
return this.dataElements.filter(element => element.category === params.category);
|
|
74
|
+
}
|
|
75
|
+
return this.dataElements;
|
|
76
|
+
};
|
|
77
|
+
|
|
78
|
+
// Returns an array of dataElements that exist on the patient, queried by
|
|
79
|
+
// QDM profile
|
|
80
|
+
PatientSchema.methods.getByProfile = function getByProfile(profile, isNegated = null) {
|
|
81
|
+
if (isNegated === true) {
|
|
82
|
+
return this.dataElements.filter(element => element._type === `QDM::${profile}` && (typeof element.negationRationale !== 'undefined' && element.negationRationale != null));
|
|
83
|
+
} else if (isNegated === false) {
|
|
84
|
+
return this.dataElements.filter(element => element._type === `QDM::${profile}` && (typeof element.negationRationale === 'undefined' || element.negationRationale == null));
|
|
85
|
+
}
|
|
86
|
+
return this.dataElements.filter(element => element._type === `QDM::${profile}`);
|
|
87
|
+
};
|
|
88
|
+
|
|
89
|
+
// This method is called by the CQL execution engine on a CQLPatient when
|
|
90
|
+
// the execution engine wants information on a record. A record could be patient
|
|
91
|
+
// characteristic information about the patient, or it could be data criteria
|
|
92
|
+
// that currently exist on this patient (data criteria you drag on a patient
|
|
93
|
+
// in Bonnie's patient builder).
|
|
94
|
+
// @param {String} profile - the data criteria requested by the execution engine
|
|
95
|
+
// @returns {Object}
|
|
96
|
+
PatientSchema.methods.findRecords = function findRecords(profile) {
|
|
97
|
+
let profileStripped;
|
|
98
|
+
if (profile === 'Patient') {
|
|
99
|
+
// Requested generic patient info
|
|
100
|
+
return { birthDatetime: this.birthDatetime };
|
|
101
|
+
} else if (/PatientCharacteristic/.test(profile)) {
|
|
102
|
+
// Requested a patient characteristic
|
|
103
|
+
profileStripped = profile.replace(/ *\{[^)]*\} */g, '');
|
|
104
|
+
return this.getByProfile(profileStripped);
|
|
105
|
+
} else if (profile != null) {
|
|
106
|
+
// Requested something else (probably a QDM data type).
|
|
107
|
+
|
|
108
|
+
// Strip model details from request. The requested profile string contains
|
|
109
|
+
// a lot of things we don't need or care about. Example, we might see
|
|
110
|
+
// something like:
|
|
111
|
+
// "{urn:healthit-gov:qdm:v5_0_draft}PatientCharacteristicEthnicity"
|
|
112
|
+
// Where we only care about: "PatientCharacteristicEthnicity".
|
|
113
|
+
profileStripped = profile.replace(/ *\{[^)]*\} */g, '');
|
|
114
|
+
|
|
115
|
+
// Check and handle negation status
|
|
116
|
+
if (/Positive/.test(profileStripped)) {
|
|
117
|
+
profileStripped = profileStripped.replace(/Positive/, '');
|
|
118
|
+
// Since the data criteria is 'Positive', it is not negated.
|
|
119
|
+
return this.getByProfile(profileStripped, false);
|
|
120
|
+
} else if (/Negative/.test(profileStripped)) {
|
|
121
|
+
profileStripped = profileStripped.replace(/Negative/, '');
|
|
122
|
+
// Since the data criteria is 'Negative', it is negated.
|
|
123
|
+
return this.getByProfile(profileStripped, true);
|
|
124
|
+
}
|
|
125
|
+
// No negation status, proceed normally
|
|
126
|
+
return this.getByProfile(profileStripped);
|
|
127
|
+
}
|
|
128
|
+
return [];
|
|
129
|
+
};
|
|
130
|
+
|
|
131
|
+
PatientSchema.methods.adverse_events = function adverse_events() {
|
|
132
|
+
return this.getDataElements({ category: 'adverse_event' });
|
|
133
|
+
};
|
|
134
|
+
|
|
135
|
+
PatientSchema.methods.allergies = function allergies() {
|
|
136
|
+
return this.getDataElements({ category: 'allergy' });
|
|
137
|
+
};
|
|
138
|
+
|
|
139
|
+
PatientSchema.methods.assessments = function assessments() {
|
|
140
|
+
return this.getDataElements({ category: 'assessment' });
|
|
141
|
+
};
|
|
142
|
+
|
|
143
|
+
PatientSchema.methods.care_experiences = function care_experiences() {
|
|
144
|
+
return this.getDataElements({ category: 'care_experience' });
|
|
145
|
+
};
|
|
146
|
+
|
|
147
|
+
PatientSchema.methods.care_goals = function care_goals() {
|
|
148
|
+
return this.getDataElements({ category: 'care_goal' });
|
|
149
|
+
};
|
|
150
|
+
|
|
151
|
+
PatientSchema.methods.communications = function communications() {
|
|
152
|
+
return this.getDataElements({ category: 'communication' });
|
|
153
|
+
};
|
|
154
|
+
|
|
155
|
+
PatientSchema.methods.conditions = function conditions() {
|
|
156
|
+
return this.getDataElements({ category: 'condition' });
|
|
157
|
+
};
|
|
158
|
+
|
|
159
|
+
PatientSchema.methods.devices = function devices() {
|
|
160
|
+
return this.getDataElements({ category: 'device' });
|
|
161
|
+
};
|
|
162
|
+
|
|
163
|
+
PatientSchema.methods.diagnostic_studies = function diagnostic_studies() {
|
|
164
|
+
return this.getDataElements({ category: 'diagnostic_study' });
|
|
165
|
+
};
|
|
166
|
+
|
|
167
|
+
PatientSchema.methods.encounters = function encounters() {
|
|
168
|
+
return this.getDataElements({ category: 'encounter' });
|
|
169
|
+
};
|
|
170
|
+
|
|
171
|
+
PatientSchema.methods.family_history = function family_history() {
|
|
172
|
+
return this.getDataElements({ category: 'family_history' });
|
|
173
|
+
};
|
|
174
|
+
|
|
175
|
+
PatientSchema.methods.functional_statuses = function functional_statuses() {
|
|
176
|
+
return this.getDataElements({ category: 'functional_status' });
|
|
177
|
+
};
|
|
178
|
+
|
|
179
|
+
PatientSchema.methods.immunizations = function immunizations() {
|
|
180
|
+
return this.getDataElements({ category: 'immunization' });
|
|
181
|
+
};
|
|
182
|
+
|
|
183
|
+
PatientSchema.methods.interventions = function interventions() {
|
|
184
|
+
return this.getDataElements({ category: 'intervention' });
|
|
185
|
+
};
|
|
186
|
+
|
|
187
|
+
PatientSchema.methods.laboratory_tests = function laboratory_tests() {
|
|
188
|
+
return this.getDataElements({ category: 'laboratory_test' });
|
|
189
|
+
};
|
|
190
|
+
|
|
191
|
+
PatientSchema.methods.medical_equipment = function medical_equipment() {
|
|
192
|
+
return this.getDataElements({ category: 'medical_equipment' });
|
|
193
|
+
};
|
|
194
|
+
|
|
195
|
+
PatientSchema.methods.medications = function medications() {
|
|
196
|
+
return this.getDataElements({ category: 'medication' });
|
|
197
|
+
};
|
|
198
|
+
|
|
199
|
+
PatientSchema.methods.physical_exams = function physical_exams() {
|
|
200
|
+
return this.getDataElements({ category: 'physical_exam' });
|
|
201
|
+
};
|
|
202
|
+
|
|
203
|
+
PatientSchema.methods.preferences = function preferences() {
|
|
204
|
+
return this.getDataElements({ category: 'preference' });
|
|
205
|
+
};
|
|
206
|
+
|
|
207
|
+
PatientSchema.methods.provider_characteristics = function provider_characteristics() {
|
|
208
|
+
return this.getDataElements({ category: 'provider_characteristic' });
|
|
209
|
+
};
|
|
210
|
+
|
|
211
|
+
PatientSchema.methods.procedures = function procedures() {
|
|
212
|
+
return this.getDataElements({ category: 'procedure' });
|
|
213
|
+
};
|
|
214
|
+
|
|
215
|
+
PatientSchema.methods.results = function results() {
|
|
216
|
+
return this.getDataElements({ category: 'result' });
|
|
217
|
+
};
|
|
218
|
+
|
|
219
|
+
PatientSchema.methods.risk_category_assessments = function risk_category_assessments() {
|
|
220
|
+
return this.getDataElements({ category: 'risk_category_assessment' });
|
|
221
|
+
};
|
|
222
|
+
|
|
223
|
+
PatientSchema.methods.social_history = function social_history() {
|
|
224
|
+
return this.getDataElements({ category: 'social_history' });
|
|
225
|
+
};
|
|
226
|
+
|
|
227
|
+
PatientSchema.methods.substances = function substances() {
|
|
228
|
+
return this.getDataElements({ category: 'substance' });
|
|
229
|
+
};
|
|
230
|
+
|
|
231
|
+
PatientSchema.methods.symptoms = function symptoms() {
|
|
232
|
+
return this.getDataElements({ category: 'symptom' });
|
|
233
|
+
};
|
|
234
|
+
|
|
235
|
+
PatientSchema.methods.system_characteristics = function system_characteristics() {
|
|
236
|
+
return this.getDataElements({ category: 'system_characteristic' });
|
|
237
|
+
};
|
|
238
|
+
|
|
239
|
+
PatientSchema.methods.transfers = function transfers() {
|
|
240
|
+
return this.getDataElements({ category: 'transfer' });
|
|
241
|
+
};
|
|
242
|
+
|
|
243
|
+
PatientSchema.methods.vital_signs = function vital_signs() {
|
|
244
|
+
return this.getDataElements({ category: 'vital_sign' });
|
|
245
|
+
};
|
|
246
|
+
|
|
247
|
+
module.exports.PatientSchema = PatientSchema;
|
|
248
|
+
module.exports.Patient = mongoose.model('Patient', PatientSchema);
|
|
@@ -0,0 +1,23 @@
|
|
|
1
|
+
const mongoose = require('mongoose');
|
|
2
|
+
const { DataElementSchema } = require('./basetypes/DataElement');
|
|
3
|
+
const Code = require('./basetypes/Code');
|
|
4
|
+
const Interval = require('./basetypes/Interval');
|
|
5
|
+
const Quantity = require('./basetypes/Quantity');
|
|
6
|
+
const DateTime = require('./basetypes/DateTime');
|
|
7
|
+
|
|
8
|
+
const [Number, String] = [
|
|
9
|
+
mongoose.Schema.Types.Number,
|
|
10
|
+
mongoose.Schema.Types.String,
|
|
11
|
+
];
|
|
12
|
+
|
|
13
|
+
const PatientCareExperienceSchema = DataElementSchema({
|
|
14
|
+
authorDatetime: DateTime,
|
|
15
|
+
hqmfOid: { type: String, default: '2.16.840.1.113883.10.20.28.3.52' },
|
|
16
|
+
category: { type: String, default: 'care_experience' },
|
|
17
|
+
qdmVersion: { type: String, default: '5.3' },
|
|
18
|
+
_type: { type: String, default: 'PatientCareExperience' },
|
|
19
|
+
|
|
20
|
+
});
|
|
21
|
+
|
|
22
|
+
module.exports.PatientCareExperienceSchema = PatientCareExperienceSchema;
|
|
23
|
+
module.exports.PatientCareExperience = mongoose.model('PatientCareExperience', PatientCareExperienceSchema);
|
|
@@ -0,0 +1,23 @@
|
|
|
1
|
+
const mongoose = require('mongoose');
|
|
2
|
+
const { DataElementSchema } = require('./basetypes/DataElement');
|
|
3
|
+
const Code = require('./basetypes/Code');
|
|
4
|
+
const Interval = require('./basetypes/Interval');
|
|
5
|
+
const Quantity = require('./basetypes/Quantity');
|
|
6
|
+
const DateTime = require('./basetypes/DateTime');
|
|
7
|
+
|
|
8
|
+
const [Number, String] = [
|
|
9
|
+
mongoose.Schema.Types.Number,
|
|
10
|
+
mongoose.Schema.Types.String,
|
|
11
|
+
];
|
|
12
|
+
|
|
13
|
+
const PatientCharacteristicSchema = DataElementSchema({
|
|
14
|
+
authorDatetime: DateTime,
|
|
15
|
+
hqmfOid: { type: String, default: '2.16.840.1.113883.10.20.28.3.53' },
|
|
16
|
+
category: { type: String, default: 'patient_characteristic' },
|
|
17
|
+
qdmVersion: { type: String, default: '5.3' },
|
|
18
|
+
_type: { type: String, default: 'PatientCharacteristic' },
|
|
19
|
+
|
|
20
|
+
});
|
|
21
|
+
|
|
22
|
+
module.exports.PatientCharacteristicSchema = PatientCharacteristicSchema;
|
|
23
|
+
module.exports.PatientCharacteristic = mongoose.model('PatientCharacteristic', PatientCharacteristicSchema);
|