cqm-converter 0.3.0 → 0.3.1

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@@ -1,7 +1,7 @@
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data/README.md

@@ -1,3 +1,5 @@
+[![Build Status](https://travis-ci.org/projecttacoma/cqm-converter.svg?branch=master)](https://travis-ci.org/projecttacoma/cqm-converter)
+
 # HDS <=> QDM Models Converter
 
 This repository includes a Ruby Gem that provides a module for converting between the older HDS based models (https://github.com/projectcypress/health-data-standards) and the newer QDM based models (https://github.com/projecttacoma/cqm-models).

data/cqm-converter.gemspec

@@ -3,7 +3,7 @@ $LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
 
 Gem::Specification.new do |spec|
   spec.name          = 'cqm-converter'
-  spec.version       = '0.3.0'
+  spec.version       = '0.3.1'
   spec.authors       = ['aholmes@mitre.org']
   spec.email         = ['aholmes@mitre.org']
 

data/lib/cqm/converter/hds_record.rb

@@ -71,7 +71,8 @@ module CQM::Converter
       # Convert patient characteristic ethnicity.
       ethnicity = record.ethnicity
       if ethnicity
-        code = QDM::Code.new(ethnicity['code'], ethnicity['codeSystem'], ethnicity['name'], Utils.code_system_helper(ethnicity['codeSystem']))
+        # See: https://phinvads.cdc.gov/vads/ViewCodeSystem.action?id=2.16.840.1.113883.6.238
+        code = QDM::Code.new(ethnicity['code'], 'cdcrec', ethnicity['name'], '2.16.840.1.113883.6.238')
         patient.dataElements << QDM::PatientCharacteristicEthnicity.new(dataElementCodes: [code])
       end
 
@@ -86,14 +87,16 @@ module CQM::Converter
       # Convert patient characteristic race.
       race = record.race
       if race
-        code = QDM::Code.new(race['code'], race['codeSystem'], race['name'], Utils.code_system_helper(race['codeSystem']))
+        # See: https://phinvads.cdc.gov/vads/ViewCodeSystem.action?id=2.16.840.1.113883.6.238
+        code = QDM::Code.new(race['code'], 'cdcrec', race['name'], '2.16.840.1.113883.6.238')
         patient.dataElements << QDM::PatientCharacteristicRace.new(dataElementCodes: [code])
       end
 
       # Convert patient characteristic sex.
       sex = record.gender
       if sex
-        code = QDM::Code.new(sex, 'AdministrativeSex', Utils.code_system_helper('AdministrativeSex'))
+        # See: https://phinvads.cdc.gov/vads/ViewCodeSystem.action?id=2.16.840.1.113883.5.1
+        code = QDM::Code.new(sex, 'AdministrativeGender', sex, '2.16.840.1.113883.5.1')
         patient.dataElements << QDM::PatientCharacteristicSex.new(dataElementCodes: [code])
       end
 

data/lib/cqm/converter/qdm_patient.rb

@@ -278,7 +278,7 @@ module CQM::Converter
       # Convert patient characteristic ethnicity.
       ethnicity = get_data_elements(patient, 'patient_characteristic', 'ethnicity').first
       ethnicity_code = ethnicity.dataElementCodes.first.symbolize_keys if ethnicity.dataElementCodes.any?
-      record.ethnicity = { code: ethnicity_code[:code], name: ethnicity_code[:descriptor], codeSystem: ethnicity_code[:codeSystem] } if ethnicity_code
+      record.ethnicity = { code: ethnicity_code[:code], name: ethnicity_code[:descriptor], codeSystem: 'CDC Race' } if ethnicity_code
 
       # Convert patient characteristic expired.
       expired = get_data_elements_by_type(patient, 'QDM::PatientCharacteristicExpired').first
@@ -288,7 +288,7 @@ module CQM::Converter
       # Convert patient characteristic race.
       race = get_data_elements(patient, 'patient_characteristic', 'race').first
       race_code = race.dataElementCodes.first.symbolize_keys if race.dataElementCodes.any?
-      record.race = { code: race_code[:code], name: race_code[:descriptor], codeSystem: race_code[:codeSystem] } if race_code
+      record.race = { code: race_code[:code], name: race_code[:descriptor], codeSystem: 'CDC Race' } if race_code
 
       # Convert patient characteristic sex.
       sex = get_data_elements_by_type(patient, 'QDM::PatientCharacteristicSex').first

data/lib/cqm/converter/utils.rb

@@ -194,9 +194,5 @@ module CQM::Converter
         category
       end
     end
-
-    def self.code_system_helper(code_system)
-      HealthDataStandards::Util::CodeSystemHelper::CODE_SYSTEMS.key(code_system)
-    end
   end
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: cqm-converter
 version: !ruby/object:Gem::Version
-  version: 0.3.0
+  version: 0.3.1
 platform: ruby
 authors:
 - aholmes@mitre.org
 autorequire: 
 bindir: exe
 cert_chain: []
-date: 2018-04-24 00:00:00.000000000 Z
+date: 2018-04-30 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: activesupport