correlation 0.0.1 → 0.0.2

data/LICENSE

@@ -0,0 +1,27 @@
+Copyright (c) 2009, Ralf Mueller (stark.dreamdetective@googlemail.com)
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+    * Redistributions of source code must retain the above copyright notice,
+      this list of conditions and the following disclaimer.
+
+    * Redistributions in binary form must reproduce the above copyright
+      notice, this list of conditions and the following disclaimer in the
+      documentation and/or other materials provided with the distribution.
+
+    * The names of its contributors may not be used to endorse or promote
+      products derived from this software without specific prior written
+      permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE
+FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

data/gemspec

@@ -1,20 +1,23 @@
 require 'rubygems'
 
 spec = Gem::Specification.new do |s|
-  s.name         = "correlation"
-  s.version      = "0.0.1"
-  s.author       = "Ralf M�ller"
-  s.email        = "stark.dreamdetective@gmail.com"
-  s.homepage     = "http://extcsv.rubyforge.org/correlation"
-  s.platform     = Gem::Platform::RUBY
-  s.summary      = "Extension of GSL: Compute correaltion of 2 datasets"
-  candidates     = Dir.glob("lib/*.rb") + [ "rakefile", "gemspec"]
-  s.files        = candidates.delete_if do |item|
-                     item.include?(".hg") || item.include?("doc")
-                   end
-  s.require_path = "lib"
-  s.test_files   = Dir.glob("test/test_*.rb")
-  s.has_rdoc     = true
+  s.name              = 'correlation'
+  s.version           = '0.0.2'
+  s.date              = Time.new.to_s
+  s.author            = 'Ralf Mueller'
+  s.email             = 'stark.dreamdetective@gmail.com'
+  s.homepage          = 'http://extcsv.rubyforge.org/correlation'
+  s.platform          = Gem::Platform::RUBY
+  s.rubyforge_project = "extcsv"
+  s.add_dependency('gsl')
+  s.summary           = 'Extension of GSL: Compute correaltion of 2 datasets'
+  candidates          = Dir.glob('lib/*.rb') + [ 'rakefile', 'gemspec','LICENSE']
+  s.files             = candidates.delete_if do |item|
+                          item.include?('www') || item.include?('pkg') || item.include?('doc')
+                        end
+  s.require_path      = 'lib'
+  s.test_files        = Dir.glob('test/test_*.rb')
+  s.has_rdoc          = true
 end
 
 # vim:ft=ruby

data/lib/correlation.rb

@@ -1,9 +1,9 @@
-require "rbgsl"
+require "gsl"
 
 # This Extension of the GNU Scientific Library bindings by Yoshiki Tsunesada
 # (http://rb-gsl.rubyforge.org) provides the computation of the correlation of two
 # GSL::Vectors. It is implemented as a method of a GSL::Vector for most easy
-# usage. 
+# usage. see project page: http://rubyforge.org/projects/extcsv
 class GSL::Vector
 
   # Follow the usual definition, e.g. from Sheriff and Geldart "Exploitation
@@ -19,8 +19,7 @@ class GSL::Vector
     end
 
     # predefine result vector
-    correlation = GSL::Vector.alloc(1)
-    correlation.shift
+    correlation = GSL::Vector.alloc(2*size+1)
 
     # Alternate definition, which is actually the opposite direction of the definition
     # (0...size).each {|i|
@@ -29,12 +28,11 @@ class GSL::Vector
     # (1...size).each {|i|
     #   correlation << self[i..size-1]*other[0...size-i].col
     # }
-
     (0...size).each {|i|
-      correlation << self[-i-1..-1]*other[0..i].col
+      correlation[0] = (self.to_a[-i-1..-1].to_gv)*(other.to_a[0..i].to_gv.col)
     }
     (1...size).each {|i|
-      correlation << self[0...size-i]*other[i..size-1].col
+      correlation[size+i] = (self.to_a[0...size-i].to_gv)*(other.to_a[i..size-1].to_gv.col)
     }
 
     [GSL::Vector.linspace(-size+1, size-1, 2*size-1) , correlation]

data/rakefile

@@ -14,6 +14,8 @@ def filename_to_sym(filename)
   File.basename(filename,File.extname(filename)).to_sym
 end
 
+# ====================================================================
+task :default => []
 # ====================================================================
 # TEST TASKS
 test_tasks = {
@@ -90,6 +92,7 @@ task :tags do
   com = "rtags --vi -f tags lib/*.rb"
   system(com)
 end
+
 #
 #
 # vim:ft=ruby

metadata

@@ -1,18 +1,35 @@
 --- !ruby/object:Gem::Specification 
 name: correlation
 version: !ruby/object:Gem::Version 
-  version: 0.0.1
+  prerelease: false
+  segments: 
+  - 0
+  - 0
+  - 2
+  version: 0.0.2
 platform: ruby
 authors: 
-- "Ralf M\xFCller"
+- Ralf Mueller
 autorequire: 
 bindir: bin
 cert_chain: []
 
-date: 2009-03-24 00:00:00 +01:00
+date: 2010-11-16 00:36:11 +01:00
 default_executable: 
-dependencies: []
-
+dependencies: 
+- !ruby/object:Gem::Dependency 
+  name: gsl
+  prerelease: false
+  requirement: &id001 !ruby/object:Gem::Requirement 
+    none: false
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        segments: 
+        - 0
+        version: "0"
+  type: :runtime
+  version_requirements: *id001
 description: 
 email: stark.dreamdetective@gmail.com
 executables: []
@@ -25,31 +42,39 @@ files:
 - lib/correlation.rb
 - rakefile
 - gemspec
+- LICENSE
+- test/test_correlation.rb
 has_rdoc: true
 homepage: http://extcsv.rubyforge.org/correlation
+licenses: []
+
 post_install_message: 
 rdoc_options: []
 
 require_paths: 
 - lib
 required_ruby_version: !ruby/object:Gem::Requirement 
+  none: false
   requirements: 
   - - ">="
     - !ruby/object:Gem::Version 
+      segments: 
+      - 0
       version: "0"
-  version: 
 required_rubygems_version: !ruby/object:Gem::Requirement 
+  none: false
   requirements: 
   - - ">="
     - !ruby/object:Gem::Version 
+      segments: 
+      - 0
       version: "0"
-  version: 
 requirements: []
 
-rubyforge_project: 
-rubygems_version: 1.2.0
+rubyforge_project: extcsv
+rubygems_version: 1.3.7
 signing_key: 
-specification_version: 2
+specification_version: 3
 summary: "Extension of GSL: Compute correaltion of 2 datasets"
 test_files: 
 - test/test_correlation.rb