commonmeta-ruby 3.8.3 → 3.11.0

data/spec/readers/commonmeta_reader_spec.rb

@@ -0,0 +1,56 @@
+# frozen_string_literal: true
+
+require 'spec_helper'
+
+describe Commonmeta::Metadata, vcr: true do
+  subject { described_class.new(input: input) }
+
+  let(:input) { "#{fixture_path}commonmeta.json" }
+
+  context 'read commonmeta metadata' do
+    it "default" do
+      expect(subject.valid?).to be true
+      expect(subject.schema_version).to eq("https://commonmeta.org/commonmeta_v0.10")
+      expect(subject.id).to eq("https://doi.org/10.7554/elife.01567")
+      expect(subject.type).to eq("JournalArticle")
+      expect(subject.url).to eq("https://elifesciences.org/articles/01567")
+      expect(subject.contributors.length).to eq(5)
+      expect(subject.contributors.first).to eq("type" => "Person", "contributorRoles" => ["Author"],
+                                               "givenName" => "Martial", "familyName" => "Sankar", "affiliation" => [{ "name" => "Department of Plant Molecular Biology, University of Lausanne, Lausanne, Switzerland" }])
+      expect(subject.license).to eq("id" => "CC-BY-3.0",
+                                    "url" => "https://creativecommons.org/licenses/by/3.0/legalcode")
+      expect(subject.titles).to eq([{ "title" => "Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth" }])
+      expect(subject.date).to eq("published" => "2014-02-11", "updated" => "2022-03-26")
+      expect(subject.publisher).to eq("id" => "https://api.crossref.org/members/4374",
+                                      "name" => "eLife Sciences Publications, Ltd")
+      expect(subject.container).to eq("identifier" => "2050-084X",
+                                      "identifierType" => "ISSN", "title" => "eLife", "type" => "Journal", "volume" => "3")
+      expect(subject.references.length).to eq(27)
+      expect(subject.references.last).to eq("containerTitle" => "Nature Cell Biology",
+                                            "contributor" => "Yin",
+                                            "doi" => "https://doi.org/10.1038/ncb2764",
+                                            "firstPage" => "860",
+                                            "key" => "bib27",
+                                            "publicationYear" => "2013",
+                                            "title" => "A screen for morphological complexity identifies regulators of switch-like transitions between discrete cell shapes",
+                                            "volume" => "15")
+      expect(subject.funding_references).to eq([{ "funderName" => "SystemsX" },
+                                                { "funderName" => "EMBO longterm post-doctoral fellowships" },
+                                                { "funderName" => "Marie Heim-Voegtlin" },
+                                                { "funderIdentifier" => "https://doi.org/10.13039/501100006390",
+                                                  "funderIdentifierType" => "Crossref Funder ID",
+                                                  "funderName" => "University of Lausanne" },
+                                                { "funderName" => "SystemsX" },
+                                                { "funderIdentifier" => "https://doi.org/10.13039/501100003043",
+                                                  "funderIdentifierType" => "Crossref Funder ID",
+                                                  "funderName" => "EMBO" },
+                                                { "funderIdentifier" => "https://doi.org/10.13039/501100001711",
+                                                  "funderIdentifierType" => "Crossref Funder ID",
+                                                  "funderName" => "Swiss National Science Foundation" },
+                                                { "funderIdentifier" => "https://doi.org/10.13039/501100006390",
+                                                  "funderIdentifierType" => "Crossref Funder ID",
+                                                  "funderName" => "University of Lausanne" }])
+      expect(subject.provider).to eq("Crossref")
+    end
+  end
+end

data/spec/readers/datacite_reader_spec.rb

@@ -36,13 +36,12 @@ describe Commonmeta::Metadata, vcr: true do
       # expect(subject.valid?).to be true
       expect(subject.id).to eq("https://doi.org/10.5063/f1m61h5x")
       expect(subject.type).to eq("Software")
-      expect(subject.contributors).to eq([{"contributorRoles"=>["Author"],
-        "name"=>
-        "Jones, Matthew B.; Slaughter, Peter; Nahf, Rob; Boettiger, Carl ; Jones, Chris; Read, Jordan; Walker, Lauren; Hart, Edmund; Chamberlain, Scott",
-        "type"=>"Organization"}])
-      expect(subject.titles).to eq([{"title"=>"dataone: R interface to the DataONE network of data repositories"}])
-      expect(subject.date).to eq("created"=>"2016-03-12", "published"=>"2016", "registered"=>"2016-03-12", "updated"=>"2020-09-18")
-      expect(subject.publisher).to eq("name"=>"KNB Data Repository")
+      expect(subject.contributors).to eq([{ "contributorRoles" => ["Author"],
+                                            "name" => "Jones, Matthew B.; Slaughter, Peter; Nahf, Rob; Boettiger, Carl ; Jones, Chris; Read, Jordan; Walker, Lauren; Hart, Edmund; Chamberlain, Scott",
+                                            "type" => "Organization" }])
+      expect(subject.titles).to eq([{ "title" => "dataone: R interface to the DataONE network of data repositories" }])
+      expect(subject.date).to eq("created" => "2016-03-12", "published" => "2016", "registered" => "2016-03-12", "updated" => "2020-09-18")
+      expect(subject.publisher).to eq("name" => "KNB Data Repository")
       expect(subject.provider).to eq("DataCite")
     end
 
@@ -70,8 +69,8 @@ describe Commonmeta::Metadata, vcr: true do
       expect(subject.type).to eq("Dissertation")
       expect(subject.contributors.length).to eq(3)
       expect(subject.contributors.first).to eq("type" => "Person", "contributorRoles" => ["Author"],
-                                            "givenName" => "Heiko", "familyName" => "Conrad")
-      expect(subject.contributors.last).to eq("id"=>"https://orcid.org/0000-0002-8633-8234", "type"=>"Person", "contributorRoles"=>["Supervision"], "givenName"=>"Gerhard", "familyName"=>"Gruebel", "affiliation"=>[{"name"=>"Deutsches Elektronen-Synchrotron"}])
+                                               "givenName" => "Heiko", "familyName" => "Conrad")
+      expect(subject.contributors.last).to eq("id" => "https://orcid.org/0000-0002-8633-8234", "type" => "Person", "contributorRoles" => ["Supervision"], "givenName" => "Gerhard", "familyName" => "Gruebel", "affiliation" => [{ "name" => "Deutsches Elektronen-Synchrotron" }])
       expect(subject.titles).to eq([{ "title" => "Dynamics of colloids in molecular glass forming liquids studied via X-ray photon correlation spectroscopy" }])
       expect(subject.date).to eq("created" => "2018-01-25", "published" => "2014",
                                  "registered" => "2018-01-25", "updated" => "2020-09-19")
@@ -155,5 +154,31 @@ describe Commonmeta::Metadata, vcr: true do
       expect(subject.license).to eq("id" => "CC-BY-4.0",
                                     "url" => "https://creativecommons.org/licenses/by/4.0/legalcode")
     end
+
+    it "dataset schema v4.5" do
+      input = "#{fixture_path}datacite-dataset_v4.5.json"
+      subject = described_class.new(input: input)
+      expect(subject.id).to eq("https://doi.org/10.82433/b09z-4k37")
+      expect(subject.type).to eq("Dataset")
+      expect(subject.contributors.length).to eq(23)
+      expect(subject.contributors[0]).to eq("contributorRoles" => ["Author"], "familyName" => "ExampleFamilyName", "givenName" => "ExampleGivenName", "type" => "Person")
+      expect(subject.contributors[2]).to eq("contributorRoles" => ["ContactPerson"], "familyName" => "ExampleFamilyName", "givenName" => "ExampleGivenName", "type" => "Person")
+      expect(subject.date).to eq("created"=>"2022-10-27", "published"=>"2022", "registered"=>"2022-10-27", "updated"=>"2024-01-02")
+      expect(subject.publisher).to eq("name" => "Example Publisher")
+      expect(subject.license).to eq("id"=>"CC-PDDC", "url"=>"https://creativecommons.org/licenses/publicdomain/")
+    end
+
+    it "instrument" do
+      input = "#{fixture_path}datacite-instrument.json"
+      subject = described_class.new(input: input)
+      expect(subject.valid?).to be true
+      expect(subject.id).to eq("https://doi.org/10.82433/08qf-ee96")
+      expect(subject.type).to eq("Instrument")
+      expect(subject.contributors.length).to eq(2)
+      expect(subject.contributors.first).to eq("contributorRoles" => ["Author"], "name" => "DECTRIS", "type" => "Organization", "id" => "https://www.wikidata.org/wiki/Q107529885")
+      expect(subject.date).to eq("created" => "2022-10-20", "published" => "2022", "registered" => "2022-10-20", "updated" => "2024-01-02")
+      expect(subject.publisher).to eq("name" => "Helmholtz Centre Potsdam - GFZ German Research Centre for Geosciences")
+      expect(subject.license).to be_nil
+    end
   end
 end

data/spec/utils_spec.rb

@@ -502,7 +502,7 @@ describe Commonmeta::Metadata do
     links = [{ "rel" => "self", "type" => "application/atom+xml", "href" => "https://syldavia-gazette.org/atom/" },
              { "rel" => "alternate", "type" => "text/html", "href" => "https://syldavia-gazette.org" },
              { "rel" => "license", "type" => "text/html", "href" => "https://creativecommons.org/licenses/by/4.0/legalcode" }]
-    
+
     it "url" do
       response = subject.get_link(links, "self")
       expect(response).to eq("https://syldavia-gazette.org/atom/")
@@ -721,7 +721,7 @@ describe Commonmeta::Metadata do
     it "decode doi to uuid" do
       doi = "https://doi.org/10.53731/6315bn4-aqg82ja-4a9wxdt-29f7279"
       response = subject.decode_doi(doi, uuid: true)
-      expect(response).to eq('255d48ab-c102-9288-a4f3-add092f388e9')
+      expect(response).to eq("255d48ab-c102-9288-a4f3-add092f388e9")
     end
   end
 
@@ -745,10 +745,36 @@ describe Commonmeta::Metadata do
     end
   end
 
-  context 'json_feed_unregistered_url' do
-    it 'all posts' do
+  context "json_feed_unregistered_url" do
+    it "all posts" do
       response = subject.json_feed_unregistered_url
       expect(response).to eq("https://api.rogue-scholar.org/posts/unregistered")
     end
   end
+
+  context "normalize_name_identifier" do
+    it "ORCID" do
+      hsh = {"schemeUri"=>"https://orcid.org", "nameIdentifier"=>"https://orcid.org/0000-0003-1419-2405", "nameIdentifierScheme"=>"ORCID"}
+      response = subject.normalize_name_identifier(hsh)
+      expect(response).to eq("https://orcid.org/0000-0003-1419-2405")
+    end
+
+    it "ROR" do
+      hsh = { "schemeUri" => "https://ror.org", "nameIdentifier" => "https://ror.org/02aj13c28", "nameIdentifierScheme" => "ROR" }
+      response = subject.normalize_name_identifier(hsh)
+      expect(response).to eq("https://ror.org/02aj13c28")
+    end
+
+    it "ISNI" do
+      hsh = { "schemeUri" => "http://isni.org/isni/", "nameIdentifier" => "0000000134596520", "nameIdentifierScheme" => "ISNI" }
+      response = subject.normalize_name_identifier(hsh)
+      expect(response).to eq("https://isni.org/isni/0000000134596520")
+    end
+
+    it "Wikidata" do
+      hsh = {"schemeUri"=>"https://www.wikidata.org/wiki/", "nameIdentifier"=>"Q107529885", "nameIdentifierScheme"=>"Wikidata"}
+      response = subject.normalize_name_identifier(hsh)
+      expect(response).to eq("https://www.wikidata.org/wiki/Q107529885")
+    end
+  end
 end

data/spec/writers/datacite_writer_spec.rb

@@ -136,7 +136,6 @@ describe Commonmeta::Metadata, vcr: true do
     it 'from schema.org' do
       input = 'https://blog.front-matter.io/posts/eating-your-own-dog-food/'
       subject = described_class.new(input: input, from: 'schema_org')
-      puts subject.errors
       expect(subject.valid?).to be true
       datacite = JSON.parse(subject.datacite)
       expect(datacite.fetch('titles')).to eq([{ 'title' => 'Eating your own Dog Food' }])

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: commonmeta-ruby
 version: !ruby/object:Gem::Version
-  version: 3.8.3
+  version: 3.11.0
 platform: ruby
 authors:
 - Martin Fenner
 autorequire:
 bindir: bin
 cert_chain: []
-date: 2024-01-10 00:00:00.000000000 Z
+date: 2024-01-26 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: activesupport
@@ -663,6 +663,7 @@ files:
 - lib/commonmeta/readers/bibtex_reader.rb
 - lib/commonmeta/readers/cff_reader.rb
 - lib/commonmeta/readers/codemeta_reader.rb
+- lib/commonmeta/readers/commonmeta_reader.rb
 - lib/commonmeta/readers/crossref_reader.rb
 - lib/commonmeta/readers/crossref_xml_reader.rb
 - lib/commonmeta/readers/csl_reader.rb
@@ -693,7 +694,7 @@ files:
 - lib/commonmeta/xml_converter.rb
 - resources/2008/09/xsd.xsl
 - resources/cff.json
-- resources/commonmeta_v0.10.4.json
+- resources/commonmeta_v0.10.6.json
 - resources/crossref/AccessIndicators.xsd
 - resources/crossref/JATS-journalpublishing1-3d2-mathml3-elements.xsd
 - resources/crossref/JATS-journalpublishing1-3d2-mathml3.xsd
@@ -719,7 +720,7 @@ files:
 - resources/datacite-resourceType-v4.xsd
 - resources/datacite-titleType-v4.xsd
 - resources/datacite-v3.json
-- resources/datacite-v4.json
+- resources/datacite-v45.json
 - resources/kernel-3.0/include/datacite-contributorType-v3.xsd
 - resources/kernel-3.0/include/datacite-dateType-v3.xsd
 - resources/kernel-3.0/include/datacite-descriptionType-v3.xsd
@@ -763,11 +764,14 @@ files:
 - spec/fixtures/citeproc.json
 - spec/fixtures/codemeta.json
 - spec/fixtures/codemeta_v2.json
+- spec/fixtures/commonmeta.json
 - spec/fixtures/crosscite.json
 - spec/fixtures/crossref.bib
 - spec/fixtures/crossref.json
 - spec/fixtures/crossref.ris
 - spec/fixtures/crossref.xml
+- spec/fixtures/datacite-dataset_v4.5.json
+- spec/fixtures/datacite-instrument.json
 - spec/fixtures/datacite.json
 - spec/fixtures/datacite_software.json
 - spec/fixtures/datacite_software_missing_comma.json
@@ -1045,6 +1049,7 @@ files:
 - spec/readers/bibtex_reader_spec.rb
 - spec/readers/cff_reader_spec.rb
 - spec/readers/codemeta_reader_spec.rb
+- spec/readers/commonmeta_reader_spec.rb
 - spec/readers/crossref_reader_spec.rb
 - spec/readers/crossref_xml_reader_spec.rb
 - spec/readers/csl_reader_spec.rb