commonmeta-ruby 3.5.2 → 3.5.4

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
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-  data.tar.gz: 578ae0ae2c0a8addf955e859d821312c1ca0951e8d9e4b542a6cf55c53055e8e
+  metadata.gz: c42c11b4ae0ee7743906d829813c5686e64359da51743c886b96dce34935556e
+  data.tar.gz: 2ab7d6c4fce7c9d33fb546a002cbad7c1220a8576cd2e73eb2341b39259eae9a
 SHA512:
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-  data.tar.gz: b3399a055354e06a990089880c228113cf6db476d4717954ffc053ed42fdbc16669a97327d420b2ecf6b014e79c7191aef0082de75b649170c76a30df58bb490
+  metadata.gz: f95088f184873a000063b3ea5bbc426723c3782d33b98956d07eeac152ba24c0445ad491b85b95aa7369df8c4705d867780d18d7ac92225839ef7133e8d7ee6e
+  data.tar.gz: 5e836d35579afa5921c4e342b6d66f2b5059b5f8165194d1508e45b9c92060f1ac67bdbffd87477650c1bc48f8defd10daeea19a42ca5b52c3590162ddffab94

data/Gemfile.lock

@@ -1,7 +1,7 @@
 PATH
   remote: .
   specs:
-    commonmeta-ruby (3.5.2)
+    commonmeta-ruby (3.5.4)
       activesupport (>= 4.2.5, < 8.0)
       addressable (~> 2.8.1, < 2.8.2)
       base32-url (>= 0.7.0, < 1)
@@ -73,7 +73,7 @@ GEM
     feedparser (2.2.0)
       logutils (>= 0.6.1)
       textutils (>= 1.0.0)
-    ffi (1.15.5)
+    ffi (1.16.2)
     ffi-compiler (1.0.1)
       ffi (>= 1.0.0)
       rake
@@ -179,7 +179,7 @@ GEM
     rspec-xsd (0.1.0)
       nokogiri (~> 1.6)
       rspec (~> 3)
-    rubocop (1.56.3)
+    rubocop (1.56.4)
       base64 (~> 0.1.1)
       json (~> 2.3)
       language_server-protocol (>= 3.17.0)
@@ -202,7 +202,7 @@ GEM
       rubocop-ast (>= 0.4.0)
     rubocop-rake (0.6.0)
       rubocop (~> 1.0)
-    rubocop-rspec (2.24.0)
+    rubocop-rspec (2.24.1)
       rubocop (~> 1.33)
       rubocop-capybara (~> 2.17)
       rubocop-factory_bot (~> 2.22)
@@ -232,7 +232,7 @@ GEM
       unf_ext
     unf_ext (0.0.8.2)
     unicode-display_width (2.4.2)
-    unicode-types (1.8.0)
+    unicode-types (1.9.0)
     uuidtools (2.2.0)
     vcr (6.2.0)
     webmock (3.19.1)

data/lib/commonmeta/cli.rb

@@ -26,7 +26,7 @@ module Commonmeta
 
     desc "", "convert metadata"
     method_option :from, aliases: "-f"
-    method_option :to, aliases: "-t", default: "schema_org"
+    method_option :to, aliases: "-t", default: "commonmeta"
     method_option :regenerate, type: :boolean, force: false
     method_option :style, aliases: "-s", default: "apa"
     method_option :locale, aliases: "-l", default: "en-US"
@@ -115,6 +115,12 @@ module Commonmeta
       puts get_json_feed_by_blog(id)
     end
 
+    desc "", "json_feed_blog_id"
+
+    def json_feed_blog_id(id)
+      puts get_json_feed_blog_id(id)
+    end
+
     desc "", "update_ghost_post"
 
     def update_ghost_post(id)

data/lib/commonmeta/metadata_utils.rb

@@ -22,6 +22,7 @@ require_relative 'writers/bibtex_writer'
 require_relative 'writers/citation_writer'
 require_relative 'writers/cff_writer'
 require_relative 'writers/codemeta_writer'
+require_relative 'writers/commonmeta_writer'
 require_relative 'writers/crossref_xml_writer'
 require_relative 'writers/csl_writer'
 require_relative 'writers/csv_writer'
@@ -56,6 +57,7 @@ module Commonmeta
     include Commonmeta::Writers::CitationWriter
     include Commonmeta::Writers::CffWriter
     include Commonmeta::Writers::CodemetaWriter
+    include Commonmeta::Writers::CommonmetaWriter
     include Commonmeta::Writers::CrossrefXmlWriter
     include Commonmeta::Writers::CslWriter
     include Commonmeta::Writers::CsvWriter

data/lib/commonmeta/readers/json_feed_reader.rb

@@ -198,6 +198,17 @@ module Commonmeta
         blog["items"].map { |item| item["id"] }.first
       end
 
+      def get_json_feed_blog_id(id)
+        # get JSON Feed item by id and return blog id
+
+        url = json_feed_item_by_id_url(id)
+        response = HTTP.get(url)
+        return nil unless response.status.success?
+
+        post = JSON.parse(response.body.to_s)
+        post.to_h.dig("blog", "slug")
+      end
+
       def get_doi_prefix_by_blog_id(blog_id)
         # for generating a random DOI.
 

data/lib/commonmeta/version.rb

@@ -1,5 +1,5 @@
 # frozen_string_literal: true
 
 module Commonmeta
-  VERSION = '3.5.2'
+  VERSION = '3.5.4'
 end

data/lib/commonmeta/writers/commonmeta_writer.rb

@@ -0,0 +1,11 @@
+# frozen_string_literal: true
+
+module Commonmeta
+  module Writers
+    module CommonmetaWriter
+      def commonmeta
+        JSON.pretty_generate meta
+      end
+    end
+  end
+end

data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_blog_id_for_json_feed_item_id/by_blog_post_id.yml

@@ -0,0 +1,132 @@
+---
+http_interactions:
+- request:
+    method: get
+    uri: https://rogue-scholar.org/api/posts/1898d2d7-4d87-4487-96c4-3073cf99e9a5
+    body:
+      encoding: ASCII-8BIT
+      string: ''
+    headers:
+      Connection:
+      - close
+      Host:
+      - rogue-scholar.org
+      User-Agent:
+      - http.rb/5.1.1
+  response:
+    status:
+      code: 200
+      message: OK
+    headers:
+      Age:
+      - '0'
+      Cache-Control:
+      - public, max-age=0, must-revalidate
+      Content-Length:
+      - '8651'
+      Content-Type:
+      - application/json; charset=utf-8
+      Date:
+      - Sun, 01 Oct 2023 12:54:48 GMT
+      Etag:
+      - '"cgg0qca1si6o1"'
+      Server:
+      - Vercel
+      Strict-Transport-Security:
+      - max-age=63072000
+      X-Matched-Path:
+      - "/api/posts/[[...params]]"
+      X-Vercel-Cache:
+      - MISS
+      X-Vercel-Id:
+      - fra1::iad1::chhkb-1696164887801-9f1569e3d50b
+      Connection:
+      - close
+    body:
+      encoding: UTF-8
+      string: '{"id":"1898d2d7-4d87-4487-96c4-3073cf99e9a5","doi":"https://doi.org/10.59350/63055-a8604","url":"http://sfmatheson.blogspot.com/2023/01/quintessence-of-dust-2023-restart-why.html","archive_url":null,"title":"Quintessence
+        of Dust 2023 restart: the why","summary":"It''s early January 2023, a little
+        before sunset in Tucson. Live image below, showing the glorious Santa Catalina
+        mountains (the snow on the upper reaches is more apparent earlier in the day)
+        and my dinner preparations (shrimp and veggies on the grill).I''ve decided
+        to start writing here at <i>Quintessence of Dust</i>, after another long hiatus.","content_html":"It''s
+        early January 2023, a little before sunset in Tucson. Live image below, showing
+        the glorious Santa Catalina mountains (the snow on the upper reaches is more
+        apparent earlier in the day) and my dinner preparations (shrimp and veggies
+        on the grill).<div><a href=\"https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEghgBx9BU21qMDFnLxgHmnsl6TQVfb3QCwOXrC1zcXq7WH9gN8E0TcH3pTslRBG6O8mb5gcuF9JVtDlJ2je6dFcfyzKE4OD38-ftr66nBxddo892_NkyuevrrX65ndSbwmXMaLh3F5yiqU1QIj8JtA8FLkKOcHOEVwVafz0rzh7PejbFzp3XT25nQxc/s4032/Jan%207.jpg\"><img
+        height=\"320\" src=\"https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEghgBx9BU21qMDFnLxgHmnsl6TQVfb3QCwOXrC1zcXq7WH9gN8E0TcH3pTslRBG6O8mb5gcuF9JVtDlJ2je6dFcfyzKE4OD38-ftr66nBxddo892_NkyuevrrX65ndSbwmXMaLh3F5yiqU1QIj8JtA8FLkKOcHOEVwVafz0rzh7PejbFzp3XT25nQxc/s320/Jan%207.jpg\"
+        width=\"240\" /></a></div><br /><div><div>I''ve decided to start writing here
+        at <i>Quintessence of Dust</i>, after another long hiatus. Here are some of
+        my reasons.</div><div><br /></div><div>1. I like to write, and I have things
+        to say, and I self-identify as an author. For eight years, I have co-organized
+        and taught in the <a href=\"https://meetings.cshl.edu/courses.aspx?course=C-WRITE&amp;year=23\"
+        target=\"_blank\">Scientific Writing Retreat at Cold Spring Harbor Laboratory</a>.
+        I''m a writer and I need to write, if only for myself.</div><div><br /></div><div>2.
+        I have an idea for a book, along with some introductory work (but no sample
+        chapters yet) and writing here will help me develop those thoughts. The idea
+        is over twelve years old and has never faded away, which I take to mean that
+        I need to get it out of my system somehow.</div><div><br /></div><div>3. I
+        have other ideas kicking around in my head and most of them are worth writing
+        about. I have one new intellectual passion that is totally worth writing about:
+        <a href=\"https://skyislandalliance.org/the-sky-islands/\" target=\"_blank\">the
+        Sky Islands</a> that nearly surround us here in Tucson.</div><div><br /></div><div>4.
+        I have an exciting new job with great new people at <a href=\"https://plos.org/\"
+        target=\"_blank\">an organization</a> that''s all in for <a href=\"https://plos.org/open-science/\"
+        target=\"_blank\">open science</a>. I recently turned over the tens digit
+        on my age-o-meter. My kids will very soon be all out of college. (One is about
+        to start a postdoc!) All of this led, predictably, to a spasm of reflection
+        on projects and vision. One clear result is that I''m feeling more inspired.<span><a
+        name=\"more\"></a></span></div><div><br /></div><div>5. The demise of Twitter
+        has led to a lot of <a href=\"https://www.theatlantic.com/technology/archive/2022/11/twitter-facebook-social-media-decline/672074/\"
+        target=\"_blank\">useful commentary</a> about the nature of social media.
+        I left Facebook two years ago and all but left Twitter two months ago. I''m
+        on a <a href=\"https://fediscience.org/explore\" target=\"_blank\">good server
+        at Mastodon</a> and I like it; maybe microblogging there can satisfy my desire
+        for conversation and connection. But <a href=\"https://www.theverge.com/23513418/bring-back-personal-blogging\"
+        target=\"_blank\">this recent piece</a> at <i>The Verge</i> by <a href=\"https://moniquejudge.com/\"
+        target=\"_blank\">Monique Judge</a> convinced me that blogging could (again)
+        have a place in the future.</div><div><br /><div>Here''s her summary, emphasis
+        mine:</div><div><blockquote>At the end of the day, we don’t know what is going
+        to happen next with Twitter or any of these platforms. We don’t know what
+        changes <a href=\"https://www.techtarget.com/whatis/definition/Web-30\" target=\"_blank\">Web
+        3.0</a> is going to bring to the internet. We do know that <b>we will all
+        still be here, wanting to share our thoughts, talk about anything and everything,
+        and commune with our people</b>. Personal blogging is the simplest and fastest
+        way to do all of that. </blockquote></div><div>That''s what I want! A place
+        to write, and (if I''m lucky) a place to discuss and \"commune\" with people.
+        That used to happen a lot at <i>Quintessence of Dust</i>.<span></span></div></div></div><div><br
+        /></div><div>Okay, but why here? This blog is over 15 years old and was started
+        when I was a Christian believer. <a href=\"https://sfmatheson.blogspot.com/2007/08/kicking-off-my-blog.html\"
+        target=\"_blank\">Its founding themes</a> were anchored in a desire to help
+        Christians understand and enjoy biology, to help them shake free of misinformation
+        and dishonesty. It has twice languished through long hiatuses and was <a href=\"https://sfmatheson.blogspot.com/p/about.html\"
+        target=\"_blank\">remodeled</a> back in 2017 a few years after I deconverted.
+        Maybe it''s time to start anew? I think not, for many of those same reasons:
+        I''m still a biologist who loves science, still worried about misinformation,
+        and still rooted in the power of scientific explanation. I''m still a bardolator
+        and a Red Sox fan. <a href=\"https://sfmatheson.blogspot.com/p/about.html\">I''m
+        still me</a>, and <i>Quintessence of Dust</i> is still my blog. The new <a
+        href=\"https://sfmatheson.blogspot.com/p/about.html\" target=\"_blank\">About
+        page</a> is slightly remodeled from 2017, and hints at the next post, which
+        will outline some new goals and ongoing projects.</div><div><br /></div><div>A
+        final note on inspiration, from Imani Perry, writing in her newsletter (<a
+        href=\"https://newsletters.theatlantic.com/unsettled-territory/\" target=\"_blank\">Unsettled
+        Territory</a>) at <i>The Atlantic</i>. The piece is \"<a href=\"https://newsletters.theatlantic.com/unsettled-territory/63af3facace609003751bacc/becoming-writer-habit-journalism/\"
+        target=\"_blank\">Writing is a Democratic Art</a>.\" It''s for subscribers
+        only but here is her challenge:</div><div><blockquote>Thinking and writing
+        at a faster pace stretched me and gave me greater confidence. Sometimes I
+        changed my mind about what I’d written a day later. But that was okay; a newsletter
+        is a moment in time. Writing it each week gave me a lovely rhythm in what
+        has otherwise been a difficult and disorienting season in history. Feeling
+        stuck can get you stuck. But writing can, and should, inspire deeds.</blockquote></div>","published_at":1673233380,"updated_at":1680470227,"indexed_at":1689006804,"authors":[{"url":null,"name":"Stephen
+        Matheson"}],"image":"https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEghgBx9BU21qMDFnLxgHmnsl6TQVfb3QCwOXrC1zcXq7WH9gN8E0TcH3pTslRBG6O8mb5gcuF9JVtDlJ2je6dFcfyzKE4OD38-ftr66nBxddo892_NkyuevrrX65ndSbwmXMaLh3F5yiqU1QIj8JtA8FLkKOcHOEVwVafz0rzh7PejbFzp3XT25nQxc/s320/Jan%207.jpg","tags":["Introduction"],"language":"en","reference":[],"relationships":[],"blog_id":"5764g49","blog_name":"Quintessence
+        of Dust","blog_slug":"sfmatheson","blog":{"id":"5764g49","title":"Quintessence
+        of Dust","description":"<i>Quintessence of Dust</i> explores science, society,
+        and human nature, focusing on genetics, development, evolution, neuroscience,
+        systems biology, and topics related to scientific literacy. I occasionally
+        discuss intelligent design, creationism, science denial, and other political/social
+        influences on scientific literacy. Additional topics: philosophy, baseball,
+        scientific culture, and Shakespeare. My main theme is <b><u>scientific explanation</u></b>.","language":"en","favicon":null,"feed_url":"http://sfmatheson.blogspot.com/feeds/posts/default","home_page_url":"http://sfmatheson.blogspot.com","user_id":"656f9875-3304-4056-935b-b29429e14222","created_at":"2023-04-18","feed_format":"application/atom+xml","license":"https://creativecommons.org/licenses/by/4.0/legalcode","generator":"Blogger
+        7.00","category":"socialSciences","prefix":"10.59350","modified_at":"2023-09-11T17:46:56+00:00","version":"https://jsonfeed.org/version/1.1","current_feed_url":null,"status":"active","issn":null,"backlog":0,"authors":null,"plan":"Team","slug":"sfmatheson","use_mastodon":false,"api":false,"funding":null,"archive_prefix":null,"use_api":null,"relative_url":null,"canonical_url":null}}'
+  recorded_at: Sun, 01 Oct 2023 12:54:48 GMT
+recorded_with: VCR 6.2.0

data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_blog_id_for_json_feed_item_id/not_found.yml

@@ -0,0 +1,49 @@
+---
+http_interactions:
+- request:
+    method: get
+    uri: https://rogue-scholar.org/api/posts/2b22bbba-bcba-4072-94cc-3f88442fff55
+    body:
+      encoding: ASCII-8BIT
+      string: ''
+    headers:
+      Connection:
+      - close
+      Host:
+      - rogue-scholar.org
+      User-Agent:
+      - http.rb/5.1.1
+  response:
+    status:
+      code: 404
+      message: Not Found
+    headers:
+      Age:
+      - '0'
+      Cache-Control:
+      - public, max-age=0, must-revalidate
+      Content-Length:
+      - '28'
+      Content-Type:
+      - application/json; charset=utf-8
+      Date:
+      - Sun, 01 Oct 2023 12:54:48 GMT
+      Etag:
+      - '"jtxxi9yf69s"'
+      Server:
+      - Vercel
+      Strict-Transport-Security:
+      - max-age=63072000
+      X-Matched-Path:
+      - "/api/posts/[[...params]]"
+      X-Vercel-Cache:
+      - MISS
+      X-Vercel-Id:
+      - fra1::iad1::6plz2-1696164888551-86b03621bd39
+      Connection:
+      - close
+    body:
+      encoding: UTF-8
+      string: '{"message":"Post not found"}'
+  recorded_at: Sun, 01 Oct 2023 12:54:48 GMT
+recorded_with: VCR 6.2.0

data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_commonmeta/with_data_citation.yml

@@ -0,0 +1,247 @@
+---
+http_interactions:
+- request:
+    method: get
+    uri: https://api.crossref.org/works/10.7554/elife.01567
+    body:
+      encoding: ASCII-8BIT
+      string: ''
+    headers:
+      Connection:
+      - close
+      Host:
+      - api.crossref.org
+      User-Agent:
+      - http.rb/5.1.1
+  response:
+    status:
+      code: 200
+      message: OK
+    headers:
+      Date:
+      - Sun, 01 Oct 2023 12:13:43 GMT
+      Content-Type:
+      - application/json
+      Transfer-Encoding:
+      - chunked
+      Access-Control-Expose-Headers:
+      - Link
+      Access-Control-Allow-Headers:
+      - X-Requested-With, Accept, Accept-Encoding, Accept-Charset, Accept-Language,
+        Accept-Ranges, Cache-Control
+      Access-Control-Allow-Origin:
+      - "*"
+      Server:
+      - Jetty(9.4.40.v20210413)
+      X-Ratelimit-Limit:
+      - '50'
+      X-Ratelimit-Interval:
+      - 1s
+      X-Api-Pool:
+      - public
+      X-Rate-Limit-Limit:
+      - '50'
+      X-Rate-Limit-Interval:
+      - 1s
+      Permissions-Policy:
+      - interest-cohort=()
+      Connection:
+      - close
+    body:
+      encoding: UTF-8
+      string: '{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2023,9,7]],"date-time":"2023-09-07T18:48:27Z","timestamp":1694112507116},"reference-count":27,"publisher":"eLife
+        Sciences Publications, Ltd","license":[{"start":{"date-parts":[[2014,2,11]],"date-time":"2014-02-11T00:00:00Z","timestamp":1392076800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/3.0\/"},{"start":{"date-parts":[[2014,2,11]],"date-time":"2014-02-11T00:00:00Z","timestamp":1392076800000},"content-version":"am","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/3.0\/"},{"start":{"date-parts":[[2014,2,11]],"date-time":"2014-02-11T00:00:00Z","timestamp":1392076800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/3.0\/"},{"start":{"date-parts":[[2014,2,11]],"date-time":"2014-02-11T00:00:00Z","timestamp":1392076800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/3.0\/"},{"start":{"date-parts":[[2014,2,11]],"date-time":"2014-02-11T00:00:00Z","timestamp":1392076800000},"content-version":"am","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/3.0\/"},{"start":{"date-parts":[[2014,2,11]],"date-time":"2014-02-11T00:00:00Z","timestamp":1392076800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/3.0\/"}],"funder":[{"name":"SystemsX"},{"name":"EMBO
+        longterm post-doctoral fellowships"},{"name":"Marie Heim-Voegtlin"},{"DOI":"10.13039\/501100006390","name":"University
+        of Lausanne","doi-asserted-by":"crossref"},{"name":"SystemsX"},{"DOI":"10.13039\/501100003043","name":"EMBO","doi-asserted-by":"publisher"},{"DOI":"10.13039\/501100001711","name":"Swiss
+        National Science Foundation","doi-asserted-by":"publisher"},{"DOI":"10.13039\/501100006390","name":"University
+        of Lausanne","doi-asserted-by":"crossref"}],"content-domain":{"domain":["www.elifesciences.org"],"crossmark-restriction":false},"short-container-title":[],"abstract":"<jats:p>Among
+        various advantages, their small size makes model organisms preferred subjects
+        of investigation. Yet, even in model systems detailed analysis of numerous
+        developmental processes at cellular level is severely hampered by their scale.
+        For instance, secondary growth of Arabidopsis hypocotyls creates a radial
+        pattern of highly specialized tissues that comprises several thousand cells
+        starting from a few dozen. This dynamic process is difficult to follow because
+        of its scale and because it can only be investigated invasively, precluding
+        comprehensive understanding of the cell proliferation, differentiation, and
+        patterning events involved. To overcome such limitation, we established an
+        automated quantitative histology approach. We acquired hypocotyl cross-sections
+        from tiled high-resolution images and extracted their information content
+        using custom high-throughput image processing and segmentation. Coupled with
+        automated cell type recognition through machine learning, we could establish
+        a cellular resolution atlas that reveals vascular morphodynamics during secondary
+        growth, for example equidistant phloem pole formation.<\/jats:p>","DOI":"10.7554\/elife.01567","type":"journal-article","created":{"date-parts":[[2014,2,11]],"date-time":"2014-02-11T16:29:04Z","timestamp":1392136144000},"source":"Crossref","is-referenced-by-count":31,"title":["Automated
+        quantitative histology reveals vascular morphodynamics during Arabidopsis
+        hypocotyl secondary growth"],"prefix":"10.7554","volume":"3","author":[{"given":"Martial","family":"Sankar","sequence":"first","affiliation":[{"name":"Department
+        of Plant Molecular Biology, University of Lausanne, Lausanne, Switzerland"}]},{"given":"Kaisa","family":"Nieminen","sequence":"additional","affiliation":[{"name":"Department
+        of Plant Molecular Biology, University of Lausanne, Lausanne, Switzerland"}]},{"given":"Laura","family":"Ragni","sequence":"additional","affiliation":[{"name":"Department
+        of Plant Molecular Biology, University of Lausanne, Lausanne, Switzerland"}]},{"given":"Ioannis","family":"Xenarios","sequence":"additional","affiliation":[{"name":"Vital-IT,
+        Swiss Institute of Bioinformatics, Lausanne, Switzerland"}]},{"given":"Christian
+        S","family":"Hardtke","sequence":"additional","affiliation":[{"name":"Department
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+        peptide signaling regulates vascular stem cell proliferation via the WOX4
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+        Cell"},{"key":"bib14","doi-asserted-by":"publisher","first-page":"15208","DOI":"10.1073\/pnas.0808444105","article-title":"Non-cell-autonomous
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+        Physiol"},{"key":"bib18","doi-asserted-by":"publisher","first-page":"1565","DOI":"10.1038\/nbt1206-1565","article-title":"What
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+        Biotechnology"},{"key":"bib19","doi-asserted-by":"publisher","first-page":"1516","DOI":"10.1073\/pnas.77.3.1516","article-title":"Classification
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data/spec/readers/json_feed_reader_spec.rb

@@ -541,4 +541,16 @@ describe Commonmeta::Metadata, vcr: true do
       expect(response).to eq("10.54900")
     end
   end
+
+  context "get blog_id for json_feed item id", vcr: true do
+    it "by blog post id" do
+      response = subject.get_json_feed_blog_id("1898d2d7-4d87-4487-96c4-3073cf99e9a5")
+      expect(response).to eq("sfmatheson")
+    end
+
+    it "not found" do
+      response = subject.get_doi_prefix_by_json_feed_item_id("2b22bbba-bcba-4072-94cc-3f88442fff55")
+      expect(response).to eq(nil)
+    end
+  end
 end

data/spec/writers/commonmeta_writer_spec.rb

@@ -0,0 +1,43 @@
+# frozen_string_literal: true
+
+require "spec_helper"
+
+describe Commonmeta::Metadata, vcr: true do
+  context "write metadata as commonmeta" do
+    it "with data citation" do
+      input = "10.7554/eLife.01567"
+      subject = described_class.new(input: input, from: "crossref")
+      json = JSON.parse(subject.commonmeta)
+      expect(json["id"]).to eq("https://doi.org/10.7554/elife.01567")
+      expect(json["type"]).to eq("JournalArticle")
+      expect(json["url"]).to eq("https://elifesciences.org/articles/01567")
+      expect(json["titles"]).to eq([{ "title" => "Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth" }])
+      expect(json["contributors"].length).to eq(5)
+      expect(json["contributors"].first).to eq("affiliation" => [{ "name" => "Department of Plant Molecular Biology, University of Lausanne, Lausanne, Switzerland" }],
+                                               "contributorRoles" => ["Author"],
+                                               "familyName" => "Sankar",
+                                               "givenName" => "Martial",
+                                               "type" => "Person")
+      expect(json["container"]).to eq("identifier" => "2050-084X",
+                                      "identifierType" => "ISSN",
+                                      "title" => "eLife",
+                                      "type" => "Journal",
+                                      "volume" => "3")
+      expect(json["publisher"]).to eq("id" => "https://api.crossref.org/members/4374", "name" => "eLife Sciences Publications, Ltd")
+      expect(json["references"].length).to eq(27)
+      expect(json["references"].first).to eq("key" => "bib1",
+                                             "doi" => "https://doi.org/10.1038/nature02100",
+                                             "contributor" => "Bonke",
+                                             "title" => "APL regulates vascular tissue identity in Arabidopsis",
+                                             "publicationYear" => "2003",
+                                             "volume" => "426",
+                                             "firstPage" => "181",
+                                             "containerTitle" => "Nature")
+      expect(json["date"]).to eq("published"=>"2014-02-11", "updated"=>"2022-03-26")
+      expect(json["descriptions"].first["description"]).to start_with("Among various advantages,")
+      expect(json["license"]).to eq("id"=>"CC-BY-3.0", "url"=>"https://creativecommons.org/licenses/by/3.0/legalcode")
+      expect(json["provider"]).to eq("Crossref")
+      expect(json["files"].first).to eq("mimeType"=>"application/pdf", "url"=>"https://cdn.elifesciences.org/articles/01567/elife-01567-v1.pdf")
+    end
+  end
+end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: commonmeta-ruby
 version: !ruby/object:Gem::Version
-  version: 3.5.2
+  version: 3.5.4
 platform: ruby
 authors:
 - Martin Fenner
 autorequire:
 bindir: bin
 cert_chain: []
-date: 2023-09-22 00:00:00.000000000 Z
+date: 2023-10-01 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: activesupport
@@ -644,6 +644,7 @@ files:
 - lib/commonmeta/writers/cff_writer.rb
 - lib/commonmeta/writers/citation_writer.rb
 - lib/commonmeta/writers/codemeta_writer.rb
+- lib/commonmeta/writers/commonmeta_writer.rb
 - lib/commonmeta/writers/crossref_xml_writer.rb
 - lib/commonmeta/writers/csl_writer.rb
 - lib/commonmeta/writers/csv_writer.rb
@@ -810,6 +811,8 @@ files:
 - spec/fixtures/vcr_cassettes/Commonmeta_Metadata/find_from_format_by_ID/datacite.yml
 - spec/fixtures/vcr_cassettes/Commonmeta_Metadata/find_from_format_by_ID/datacite_doi_http.yml
 - spec/fixtures/vcr_cassettes/Commonmeta_Metadata/find_from_format_by_ID/unknown_DOI_registration_agency.yml
+- spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_blog_id_for_json_feed_item_id/by_blog_post_id.yml
+- spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_blog_id_for_json_feed_item_id/not_found.yml
 - spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_cff_metadata/cff-converter-python.yml
 - spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_cff_metadata/ruby-cff.yml
 - spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_cff_metadata/ruby-cff_repository_url.yml
@@ -928,6 +931,7 @@ files:
 - spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/software_w/version.yml
 - spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_codemeta/SoftwareSourceCode_DataCite.yml
 - spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_codemeta/SoftwareSourceCode_DataCite_check_codemeta_v2.yml
+- spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_commonmeta/with_data_citation.yml
 - spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/another_schema_org_from_front-matter.yml
 - spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/book_oup.yml
 - spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/journal_article.yml
@@ -1026,6 +1030,7 @@ files:
 - spec/writers/cff_writer_spec.rb
 - spec/writers/citation_writer_spec.rb
 - spec/writers/codemeta_writer_spec.rb
+- spec/writers/commonmeta_writer_spec.rb
 - spec/writers/crossref_xml_writer_spec.rb
 - spec/writers/csl_writer_spec.rb
 - spec/writers/csv_writer_spec.rb