commonmeta-ruby 3.2.6 → 3.2.7
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/Gemfile.lock +16 -2
- data/commonmeta.gemspec +1 -0
- data/lib/commonmeta/author_utils.rb +20 -3
- data/lib/commonmeta/cli.rb +2 -2
- data/lib/commonmeta/crossref_utils.rb +22 -18
- data/lib/commonmeta/readers/json_feed_reader.rb +27 -2
- data/lib/commonmeta/utils.rb +13 -1
- data/lib/commonmeta/version.rb +1 -1
- data/resources/crossref/common5.3.1.xsd +43 -35
- data/spec/author_utils_spec.rb +38 -0
- data/spec/cli_spec.rb +5 -5
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/json_feed_unregistered/blog_post_uuid.yml +49 -0
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed/unregistered_posts.yml +215 -0
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/blogger_post.yml +20 -11
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_author_name_suffix.yml +215 -0
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_doi.yml +14 -9
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_without_doi.yml +9 -8
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/jekyll_post.yml +15 -10
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/syldavia_gazette_post_with_references.yml +328 -0
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/upstream_post_with_references.yml +824 -0
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/wordpress_post.yml +14 -9
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/wordpress_post_with_references.yml +390 -0
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/{json_feed_url → json_feed_unregistered_url}/all_posts.yml +11 -11
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/another_schema_org_from_front-matter.yml +103 -105
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/journal_article.yml +5 -5
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/journal_article_from_datacite.yml +4 -4
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_rogue_scholar_with_doi.yml +60 -9
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_upstream_blog.yml +55 -7
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_with_references.yml +824 -0
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/posted_content.yml +17 -17
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/schema_org_from_another_science_blog.yml +12 -8
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/schema_org_from_front_matter.yml +178 -181
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/schema_org_from_upstream_blog.yml +104 -92
- data/spec/readers/json_feed_reader_spec.rb +106 -12
- data/spec/utils_spec.rb +23 -5
- data/spec/writers/crossref_xml_writer_spec.rb +31 -3
- metadata +24 -8
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/json_feed_url/front-matter_blog.yml +0 -221
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_item_from_rogue_scholar_with_doi.yml +0 -163
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_item_from_upstream_blog.yml +0 -243
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_post_from_rogue_scholar_with_doi.yml +0 -210
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_post_from_upstream_blog.yml +0 -290
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Research Software Alliance (ReSA)","summary":"Research software is a key part
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of most research today. As University of Manchester Professor Carole Goble
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has said, \"software is the ubiquitous instrument of science.\" Creating and
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maintaining research software is a human effort, and as Yanina Bellina, rOpenSci
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Community Manager, has said, \"the work of the people who develop and maintain
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research software is often hidden and needs to be recognized.\"Studies of
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researchers at leading UK universities [1] and of postdoctoral researchers
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in the US...","date_published":"2023-04-18T10:36:52Z","date_modified":"2023-04-18T10:36:52Z","authors":[{"url":"https://orcid.org/0000-0001-5934-7525","name":"Daniel
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S. Katz"},{"url":null,"name":"Michelle Barker"}],"image":"https://upstream.force11.org/content/images/2023/04/resa-logo-7.png","content_html":"
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<p>Research software is a key part of most research today. As University of
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Manchester Professor Carole Goble has said, \"software is the ubiquitous instrument
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of science.\" Creating and maintaining research software is a human effort,
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and as Yanina Bellina, rOpenSci Community Manager, has said, \"the work of
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the people who develop and maintain research software is often hidden and
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needs to be recognized.\"</p><p>Studies of researchers at leading UK universities
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[<a href=\"https://www.software.ac.uk/blog/2014-12-04-its-impossible-conduct-research-without-software-say-7-out-10-uk-researchers?bw\">1</a>] and
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of postdoctoral researchers in the US [<a href=\"https://doi.org/10.6084/m9.figshare.5328442\">2</a>]
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have found that over 90% use research software, over 65% see research software
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as fundamental to their research, and 25-55% develop software as part of the
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research.</p><p>Research software, being ubiquitous, is difficult to concisely
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define. One recent attempt [<a href=\"https://doi.org/10.54900/9akm9y5-5ject5y\">3</a>]
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says that research software:</p><figure class=\"kg-card kg-image-card kg-card-hascaption\"><img
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src=\"https://upstream.force11.org/content/images/2023/04/rob-v2-table-6.jpg\"
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class=\"kg-image\" alt loading=\"lazy\" width=\"1080\" height=\"608\" srcset=\"https://upstream.force11.org/content/images/size/w600/2023/04/rob-v2-table-6.jpg
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1000w, https://upstream.force11.org/content/images/2023/04/rob-v2-table-6.jpg
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1080w\" sizes=\"(min-width: 720px) 720px\"><figcaption>Figure from <a href=\"https://doi.org/10.54900/9akm9y5-5ject5y\">https://doi.org/10.54900/9akm9y5-5ject5y</a></figcaption></figure><p>Once
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research software is developed, however, users can find bugs, users can want
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new features, and the underlying hardware and software on which the software
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is built (e.g., libraries, OS) can change. The research software needs to
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be manually maintained in response to these issues. In other words, research
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software is not a one-time investment, but requires ongoing maintenance.</p><p>Research
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software sustainability can be defined as occurring when the resources (people,
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funding, etc.) to enable maintenance are gathered and applied. </p><p>This
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is different from challenges for publications and datasets because while research
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software can similarly be a research result and research product, it has properties
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that differ from papers and datasets, and needs different policies and funding
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models.</p><h2 id=\"research-software-alliance-resa\">Research Software Alliance
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(ReSA)</h2><p>In response to these facts, the <a href=\"http://www.researchsoft.org/\">Research
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Software Alliance (ReSA)</a> was founded in 2019 by the <a href=\"https://ardc.edu.au/\">Australia
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Research Data Commons (ARDC)</a>, the <a href=\"https://alliancecan.ca/en\">Digital
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Research Alliance of Canada</a>, the <a href=\"https://www.ncsa.illinois.edu/\">National
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Center for Supercomputing Applications (NCSA)</a>, the <a href=\"https://www.esciencecenter.nl/\">Netherlands
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eScience Center</a>, and the <a href=\"https://www.software.ac.uk/\">Software
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Sustainability Institute (SSI)</a> to help these organisations and other stakeholders
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collaborate on the advancement of the research software ecosystem. </p><p>ReSA''s
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vision is that research software and those who develop and maintain it are
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recognised and valued as fundamental and vital to research worldwide, while
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its mission is to advance the research software ecosystem by collaborating
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with key influencers and decision makers.</p><p>ReSA is a fiscally-sponsored
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project of <a href=\"https://www.codeforsociety.org/\">Code for Science &
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Society</a>, has part time <a href=\"https://www.researchsoft.org/people/\">staff
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members </a>who include a Director, Dr Michelle Barker, and Community Managers
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located in Africa, Asia, Australia and Canada, and is led by a <a href=\"https://www.researchsoft.org/people/\">steering
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committee</a> chaired by Daniel S. Katz, Chief Scientist at NCSA at the University
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of Illinois Urbana Champaign. ReSA has received support totalling USD$663,500
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in cash, and USD$344,000 (details are <a href=\"https://www.researchsoft.org/about-resa/\">publicly
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available</a>) as in-kind contributions from its <a href=\"https://www.researchsoft.org/about-resa/\">sponsors</a>,
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<a href=\"https://www.researchsoft.org/about-resa/\">Founding Members</a>,
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and <a href=\"https://www.researchsoft.org/membership/\">Organisational Members</a>.</p><h2
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id=\"activities\">Activities</h2><p>ReSA accomplishes work primarily through
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forums and task forces. </p><h3 id=\"funders-forum\"><a href=\"https://www.researchsoft.org/funders-forum/\">Funders
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Forum</a></h3><p>The ReSA Funders Forum, a collaboration of 30+ research software
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funding organisations, started in 2022. The organisations represented are
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currently about 2/3 government, 1/4 philanthropic, and 1/12 industry. Geographically,
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41% are in Europe, 34% in North America, 17% in Australasia, and 4% each in
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African and South America.</p><p>The Funders Forum provides a formal mechanism
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for funders to share funding practices, address research software community
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challenges, facilitate networks and collaboration, and consider how to achieve
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long-term sustainability for research software. It meets monthly, with each
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meeting repeating twice in a day to allow those in different time zones to
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participate each time, and shifting in time from month to month to allow different
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sets of participants to form each time. Each meeting includes short presentations
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from funders on their new activities, and a discussion topic that is either
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led by ReSA or by a funder, such as on diversity, equity, and inclusion in
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research software, open source program offices, collaboration mechanisms,
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and landscape analysis. The Funder Forums also has working groups in which
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more focused activities can occur, such as planning for a multi-organisational
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funding call and defining policies around FAIR for research software.</p><p>Discussions
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in the ReSA steering committee and the funders forum led ReSA and the Netherlands
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eScience Center to co-convene the “<a href=\"https://future-of-research-software.org/\">International
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Funders Workshop: The Future of Research Software</a>” in Amsterdam in November
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2022, with representation from 45 funding organisations (those who provide
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monetary and/or in-kind support to research software and/or the people who
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develop and maintain it). </p><figure class=\"kg-card kg-image-card kg-card-hascaption\"><img
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src=\"https://upstream.force11.org/content/images/2023/04/52502576946_04a37f7888_k.jpg\"
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class=\"kg-image\" alt loading=\"lazy\" width=\"2000\" height=\"1334\" srcset=\"https://upstream.force11.org/content/images/size/w600/2023/04/52502576946_04a37f7888_k.jpg
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600w, https://upstream.force11.org/content/images/size/w1000/2023/04/52502576946_04a37f7888_k.jpg
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1000w, https://upstream.force11.org/content/images/size/w1600/2023/04/52502576946_04a37f7888_k.jpg
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2048w\" sizes=\"(min-width: 720px) 720px\"><figcaption><a href=\"https://www.flickr.com/photos/esciencecenter/52502576946/in/album-72177720303712317/&sa=D&source=docs&ust=1681327121704634&usg=AOvVaw0eLOLV0UmKvACkvx-vuQCj\">Photo
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via Flickr</a>. Credit: <a href=\"https://https://anneliesverhelst.com/&sa=D&source=docs&ust=1681327121686238&usg=AOvVaw29udzgf41EP21WHifLfeUF\">Annelies
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Verhelst</a>.</figcaption></figure><p>In this workshop, attendees discussed
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a draft of the Amsterdam Declaration on Funding Research Software Sustainability
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[<a href=\"https://doi.org/10.5281/zenodo.7330541\">4</a>], which continues
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to be <a href=\"https://adore.software/\">open for consultation</a>. </p><figure
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class=\"kg-card kg-image-card kg-card-hascaption\"><img src=\"https://upstream.force11.org/content/images/2023/04/52502848059_61f6ab1780_k.jpg\"
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class=\"kg-image\" alt loading=\"lazy\" width=\"2000\" height=\"1331\" srcset=\"https://upstream.force11.org/content/images/size/w600/2023/04/52502848059_61f6ab1780_k.jpg
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2048w\" sizes=\"(min-width: 720px) 720px\"><figcaption><a href=\"https://www.flickr.com/photos/esciencecenter/52502848059/in/album-72177720303712317/\">Photo
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via Flickr</a>. Credit: <a href=\"https://anneliesverhelst.com/&sa=D&source=docs&ust=1681327121686238&usg=AOvVaw29udzgf41EP21WHifLfeUF\">Annelies
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Verhelst</a>.</figcaption></figure><h3 id=\"community-forum\"><a href=\"https://www.researchsoft.org/events/2022-06/\">Community
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Forum</a></h3><p>ReSA hosts an occasional online community forum for the global
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research software community, as an opportunity for participants to meet and
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share information. Each call features a short talk and follow-up discussion,
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with the aim of facilitating community consideration about what’s needed next
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to address particular issues. The Community Forum is open to everyone. Meetings
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occur at alternating times to maximise attendance by participants in different
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time zones. Meeting topics have included:</p><ul><li>Outcomes of Vive la différence
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- research software engineers [<a href=\"https://doi.org/10.5281/zenodo.6859709\">5</a>],
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a workshop that considered how to reframe research software engineering to
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place diversity, equity and inclusion as a central organising principle</li><li>The
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Research Software Roadmap</li><li>Aligning publisher policies for sharing
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code</li><li>The Research Software Community in the Global South [<a href=\"https://doi.org/10.5281/zenodo.7179892\">6</a>]</li><li><a
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href=\"https://future-of-research-software.org/\">The International Funders
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Workshop</a></li></ul><h3 id=\"task-forces\"><a href=\"https://www.researchsoft.org/taskforces/\">Task
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Forces</a></h3><ul><li>Evidence for the importance of research software (completed,
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2020): identified and analysed resources [<a href=\"https://doi.org/10.5281/zenodo.3884311\">7</a>]
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that demonstrate the importance of research software to research outcomes,
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to provide information for sharing with key influencers.</li><li>Software
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sections of RDA COVID-19 Guidelines and Recommendations for policy makers,
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funders and the research community (completed, 2020) [<a href=\"https://doi.org/10.15497/RDA00052\">8</a>]:
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helping COVID-19 stakeholders follow best practices to maximise the efficiency
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of their work, and to act as a blueprint for future emergencies.</li><li>FAIR
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for research software (completed, 2022): Jointly with FORCE11 and RDA, developed
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the FAIR for research software (FAIR4RS) principles [<a href=\"https://doi.org/10.15497/RDA00068\">9</a>]</li><li>FAIR
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4 Research Software Roadmap (completed, 2022) [<a href=\"https://doi.org/10.5281/zenodo.6239373\">10</a>]:
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Identified key stakeholders in areas arising from the application of the FAIR
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principles to research software, to guide strategic planning and investment.
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Consultation with key stakeholders enabled mapping of existing projects that
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apply some of the elements of the FAIR principles to research software into
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a longer-term framework to improve strategic alignment and potential collaborators/leads
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for parts of the Roadmap.</li><li>Software landscape analysis (completed,
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2022): Mapping the international research software community landscape</li><li>Initial
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mapping (2020) [<a href=\"https://doi.org/10.5281/zenodo.3699950\">11</a>]</li><li>Expanded
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mapping of the Global South (2022) [<a href=\"https://doi.org/10.5281/zenodo.7179892\">6</a>]</li><li>Code
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availability (active): Jointly with FORCE11, working towards greater alignment
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on policy and other related actions for code (the code associated with the
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findings of an article) being made available alongside (or prior to) the publication
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of the article.</li><li><a href=\"https://www.researchsoft.org/funding-opportunities/\">Database
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of research funding software opportunities</a> (active): maintaining, adding
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to, and analysing the database to better understand opportunities and their
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characteristics.</li><li>Research institution policies to support research
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software (starting): is building a <a href=\"https://docs.google.com/spreadsheets/d/1YgXG1eSrby8e5wzqYOiOZW6KmJtR-wdBTrjr1_aMtF4/edit#gid=0\">collection
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of institutional policies</a> that support research software and the people
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who develop and maintain it, and work to better share them with interested
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stakeholders.</li></ul><p>In addition, ReSA participates in ad hoc activities
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that support its mission, such as sharing diversity, equity, and inclusion
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best practices at the 2022 Vive la difference - research software engineers
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hybrid workshop [<a href=\"https://doi.org/10.5281/zenodo.6859709\">5</a>].</p><figure
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class=\"kg-card kg-image-card\"><img src=\"https://upstream.force11.org/content/images/2023/04/s22004-lcp-vive-la-difference-04---623c6b3946587.png\"
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class=\"kg-image\" alt loading=\"lazy\" width=\"2000\" height=\"2828\" srcset=\"https://upstream.force11.org/content/images/size/w600/2023/04/s22004-lcp-vive-la-difference-04---623c6b3946587.png
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600w, https://upstream.force11.org/content/images/size/w1000/2023/04/s22004-lcp-vive-la-difference-04---623c6b3946587.png
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1000w, https://upstream.force11.org/content/images/size/w1600/2023/04/s22004-lcp-vive-la-difference-04---623c6b3946587.png
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1600w, https://upstream.force11.org/content/images/2023/04/s22004-lcp-vive-la-difference-04---623c6b3946587.png
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2381w\" sizes=\"(min-width: 720px) 720px\"></figure><h2 id=\"participate\">Participate</h2><p>ReSA
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provides freely available <a href=\"https://www.researchsoft.org/resa-resources/\">resources</a>
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that anyone can use to raise awareness of the importance of research software
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and a <a href=\"https://www.researchsoft.org/funding-opportunities/\">database</a>
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or research software funding opportunities. </p><p>Anyone can sign up to
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receive updates on ReSA through its regular <a href=\"https://www.researchsoft.org/news/\">newsletter</a>,
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provide information on <a href=\"https://docs.google.com/forms/d/e/1FAIpQLSdeZrx0kXAhD4XfpDrQ8Dmg4qJTRZWboMd-zvgjjtgBs1I68g/viewform\">new
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funding calls</a> to our <a href=\"https://www.researchsoft.org/funding-opportunities/\">database</a>,
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join <a href=\"https://www.researchsoft.org/taskforces/\">task forces</a>
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focused on specific activities, and join the ReSA <a href=\"http://researchsoft.slack.com\">Slack</a>
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to share what is happening in their community.</p><p>Anyone who represents
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a funding organisation and wants to interact with other funders, can join
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the (free) <a href=\"https://www.researchsoft.org/funders-forum/\">Research
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Software Funders Forum</a>.</p><p>Finally, ReSA is always looking for organisations
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who want to become recognised as <a href=\"https://www.researchsoft.org/membership/\">organisational
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members</a> in order to financially support its work.</p><h2 id=\"references\">References</h2><ol><li>It’s
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impossible to conduct research without software, say 7 out of 10 UK researchers.
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Accessed April 13, 2023. <a href=\"https://www.software.ac.uk/blog/2014-12-04-its-impossible-conduct-research-without-software-say-7-out-10-uk-researchers\">https://www.software.ac.uk/blog/2014-12-04-its-impossible-conduct-research-without-software-say-7-out-10-uk-researchers</a></li><li>Nangia
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U, Katz DS. Track 1 Paper: Surveying the U.S. National Postdoctoral Association
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Regarding Software Use and Training in Research. Published online August 30,
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2017. doi:<a href=\"https://doi.org/10.6084/m9.figshare.5328442.v3\">10.6084/m9.figshare.5328442.v3</a></li><li>Nieuwpoort
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R van, Katz DS. Defining the roles of research software. <em>Upstream</em>.
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Published online March 14, 2023. doi:<a href=\"https://doi.org/10.54900/9akm9y5-5ject5y\">10.54900/9akm9y5-5ject5y</a></li><li>Barker
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M, Hong NPC, Eijnatten J van, Katz DS. Amsterdam Declaration on Funding Research
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Software Sustainability. Published online March 16, 2023. doi:<a href=\"https://doi.org/10.5281/zenodo.7740084\">10.5281/zenodo.7740084</a></li><li>Barker
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M, Leung MA, Martinez PA, et al. <em>Report on Vive La Différence - Research
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Software Engineers</em>. Zenodo; 2022. doi:<a href=\"https://doi.org/10.5281/zenodo.6859709\">10.5281/zenodo.6859709</a></li><li>Martinez
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PA. The Research Software Community Landscape in the Global South. Published
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online October 10, 2022. doi:<a href=\"https://doi.org/10.5281/zenodo.7179892\">10.5281/zenodo.7179892</a></li><li>Barker
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M, Katz DS, Gonzalez-Beltran A. <em>Evidence for the Importance of Research
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Software</em>. Zenodo; 2020. doi:<a href=\"https://doi.org/10.5281/zenodo.3884311\">10.5281/zenodo.3884311</a></li><li>Research
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Data Alliance. Final release: COVID-19 guidelines. Published online 2020.
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doi:<a href=\"https://doi.org/10.15497/RDA00052\">10.15497/RDA00052</a></li><li>Chue
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Hong NP, Katz DS, Barker M, et al. FAIR Principles for Research Software (FAIR4RS
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Principles). Published online 2021. doi:<a href=\"https://doi.org/10.15497/RDA00068\">10.15497/RDA00068</a></li><li>Barker,
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Michelle. FAIR4RS Roadmap Report. Published online February 20, 2022. doi:<a
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href=\"https://doi.org/10.5281/ZENODO.6239373\">10.5281/ZENODO.6239373</a></li><li>Katz
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DS, Barker M, Martinez PA, Anzt H, Gonzalez-Beltran A, Bakker T. The Research
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Software Alliance (ReSA) and the community landscape. Published online March
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11, 2020. doi:<a href=\"https://doi.org/10.5281/ZENODO.3699950\">10.5281/ZENODO.3699950</a><br></li></ol>
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body:
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821
|
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encoding: UTF-8
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822
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string: ''
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823
|
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recorded_at: Thu, 15 Jun 2023 12:31:06 GMT
|
824
|
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recorded_with: VCR 6.1.0
|