commonmeta-ruby 3.0.8 → 3.0.10

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
checksums.yaml CHANGED
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data/.gitignore CHANGED
@@ -10,9 +10,6 @@
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  /test/version_tmp/
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  /tmp/
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- # Used by dotenv library to load environment variables.
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- .env
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-
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  ## Specific to RubyMotion:
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  .dat*
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  .repl_history
data/Gemfile.lock CHANGED
@@ -1,7 +1,7 @@
1
1
  PATH
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  remote: .
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3
  specs:
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- commonmeta-ruby (3.0.8)
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+ commonmeta-ruby (3.0.10)
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  activesupport (>= 4.2.5, < 8.0)
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  addressable (~> 2.8.1, < 2.8.2)
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  base32-url (>= 0.5.0, < 1)
@@ -9,7 +9,6 @@ PATH
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  builder (~> 3.2, >= 3.2.4)
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  citeproc-ruby (~> 2.0)
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  csl-styles (~> 2.0)
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- dotenv (~> 2.1, >= 2.1.1)
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  edtf (~> 3.0, >= 3.0.4)
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  gender_detector (~> 2.0)
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  http (~> 5.1, >= 5.1.1)
@@ -58,7 +57,6 @@ GEM
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  docile (1.4.0)
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  domain_name (0.5.20190701)
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  unf (>= 0.0.5, < 1.0.0)
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- dotenv (2.8.1)
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  ebnf (2.3.2)
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  htmlentities (~> 4.3)
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  rdf (~> 3.2)
@@ -74,9 +72,8 @@ GEM
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  ffi (>= 1.0.0)
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  rake
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  gender_detector (2.0.0)
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- haml (6.1.1)
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- temple (>= 0.8.2)
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- thor
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+ haml (5.2.2)
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+ temple (>= 0.8.0)
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  tilt
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  hana (1.3.7)
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  hashdiff (1.0.1)
@@ -123,9 +120,9 @@ GEM
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  minitest (5.18.0)
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  multi_json (1.15.0)
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  namae (1.1.1)
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- nokogiri (1.14.2-arm64-darwin)
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+ nokogiri (1.14.3-arm64-darwin)
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  racc (~> 1.4)
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- oj (3.14.2)
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+ oj (3.14.3)
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  optimist (3.0.1)
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  parallel (1.22.1)
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  parser (3.2.2.0)
@@ -145,14 +142,15 @@ GEM
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  link_header (~> 0.0, >= 0.0.8)
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  rdf-aggregate-repo (3.2.1)
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  rdf (~> 3.2)
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- rdf-rdfa (3.2.1)
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+ rdf-rdfa (3.2.2)
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  haml (>= 5.2, < 7)
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  htmlentities (~> 4.3)
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  rdf (~> 3.2)
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  rdf-aggregate-repo (~> 3.2)
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  rdf-vocab (~> 3.2)
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  rdf-xsd (~> 3.2)
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- rdf-rdfxml (3.2.0)
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+ rdf-rdfxml (3.2.1)
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+ haml (~> 5.2)
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  htmlentities (~> 4.3)
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  rdf (~> 3.2)
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  rdf-rdfa (~> 3.2)
@@ -160,7 +158,7 @@ GEM
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  rdf-turtle (3.2.1)
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  ebnf (~> 2.3)
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  rdf (~> 3.2)
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- rdf-vocab (3.2.4)
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+ rdf-vocab (3.2.5)
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  rdf (~> 3.2, >= 3.2.4)
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  rdf-xsd (3.2.1)
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  rdf (~> 3.2)
@@ -183,7 +181,7 @@ GEM
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  rspec-xsd (0.1.0)
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  nokogiri (~> 1.6)
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  rspec (~> 3)
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- rubocop (1.49.0)
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+ rubocop (1.50.1)
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  json (~> 2.3)
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  parallel (~> 1.10)
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  parser (>= 3.2.0.0)
@@ -197,7 +195,7 @@ GEM
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  parser (>= 3.2.1.0)
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  rubocop-capybara (2.17.1)
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  rubocop (~> 1.41)
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- rubocop-performance (1.16.0)
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+ rubocop-performance (1.17.1)
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  rubocop (>= 1.7.0, < 2.0)
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  rubocop-ast (>= 0.4.0)
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  rubocop-rake (0.6.0)
data/bin/commonmeta CHANGED
@@ -2,7 +2,7 @@
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  require File.expand_path("../../lib/commonmeta", __FILE__)
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4
 
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- if (ARGV & %w(--version -v help --help encode decode)).empty?
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+ if (ARGV & %w(--version -v help --help encode decode encode_id decode_id)).empty?
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  Commonmeta::CLI.start(ARGV.dup.unshift("convert"))
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  else
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  Commonmeta::CLI.start
data/commonmeta.gemspec CHANGED
@@ -25,7 +25,6 @@ Gem::Specification.new do |s|
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  s.add_dependency 'builder', '~> 3.2', '>= 3.2.4'
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  s.add_dependency 'citeproc-ruby', '~> 2.0'
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  s.add_dependency 'csl-styles', '~> 2.0'
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- s.add_dependency 'dotenv', '~> 2.1', '>= 2.1.1'
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  s.add_dependency 'edtf', '~> 3.0', '>= 3.0.4'
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  s.add_dependency 'gender_detector', '~> 2.0'
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  s.add_dependency 'http', '~> 5.1', '>= 5.1.1'
@@ -2,9 +2,6 @@
2
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3
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  module Commonmeta
4
4
  module CrossrefUtils
5
- # To configure the writing of Crossref metadata, use environmental
6
- # variables CROSSREF_DEPOSITOR_NAME, CROSSREF_DEPOSITOR_EMAIL and CROSSREF_REGISTRANT,
7
- # e.g. in a .env file
8
5
  def write_crossref_xml
9
6
  @crossref_xml ||= Nokogiri::XML::Builder.new(encoding: 'UTF-8') do |xml|
10
7
  xml.doi_batch(crossref_root_attributes) do
@@ -13,10 +10,10 @@ module Commonmeta
13
10
  xml.doi_batch_id(SecureRandom.uuid)
14
11
  xml.timestamp(Time.now.utc.strftime('%Y%m%d%H%M%S'))
15
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  xml.depositor do
16
- xml.depositor_name(ENV.fetch('CROSSREF_DEPOSITOR_NAME', nil))
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- xml.email_address(ENV.fetch('CROSSREF_DEPOSITOR_EMAIL', nil))
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+ xml.depositor_name(depositor)
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+ xml.email_address(email)
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15
  end
19
- xml.registrant(ENV.fetch('CROSSREF_REGISTRANT', nil))
16
+ xml.registrant(registrant)
20
17
  end
21
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  xml.body do
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19
  insert_crossref_work(xml)
@@ -133,7 +130,7 @@ module Commonmeta
133
130
 
134
131
  def insert_citation_list(xml)
135
132
  xml.citation_list do
136
- references.each do |ref|
133
+ Array.wrap(references).each do |ref|
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134
  xml.citation('key' => ref['key']) do
138
135
  xml.journal_article(ref['journal_title'])
139
136
  xml.author(ref['author'])
@@ -45,9 +45,6 @@ module Commonmeta
45
45
  'state' => options[:state],
46
46
  'provider_id' => options[:provider_id],
47
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  'client_id' => options[:client_id],
48
- 'depositor' => options[:depositor],
49
- 'email' => options[:email],
50
- 'registrant' => options[:registrant],
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48
  'content_url' => options[:content_url]
52
49
  }
53
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  string = File.read(options[:input])
@@ -62,9 +59,6 @@ module Commonmeta
62
59
  'state' => options[:state],
63
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  'provider_id' => options[:provider_id],
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  'client_id' => options[:client_id],
65
- 'depositor' => options[:depositor],
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- 'email' => options[:email],
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- 'registrant' => options[:registrant],
68
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  'content_url' => options[:content_url],
69
63
  'creators' => options[:creators],
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  'contributors' => options[:contributors],
@@ -94,11 +88,11 @@ module Commonmeta
94
88
  @client_id = hsh.to_h['client_id'].presence
95
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  @content_url = hsh.to_h['content_url'].presence
96
90
 
97
- # options that come from the submission, needed
91
+ # options that come from the cli, needed
98
92
  # for crossref doi registration
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- @depositor = hsh.to_h['depositor'].presence
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- @email = hsh.to_h['email'].presence
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- @registrant = hsh.to_h['registrant'].presence
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+ @depositor = options[:depositor]
94
+ @email = options[:email]
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+ @registrant = options[:registrant]
102
96
 
103
97
  # set attributes directly
104
98
  read_options = options.slice(
@@ -1,5 +1,5 @@
1
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  # frozen_string_literal: true
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2
 
3
3
  module Commonmeta
4
- VERSION = '3.0.8'
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+ VERSION = '3.0.10'
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5
  end
data/lib/commonmeta.rb CHANGED
@@ -1,6 +1,5 @@
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  # frozen_string_literal: true
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2
 
3
- require 'dotenv/load'
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  require 'active_support/all'
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  require 'nokogiri'
6
5
  ActiveSupport::XmlMini.backend = 'Nokogiri'
data/spec/cli_spec.rb CHANGED
@@ -11,6 +11,7 @@ describe Commonmeta::CLI do
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  describe "convert from id", vcr: true do
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  SCHEMA_ORG_REGEX = /"@context": "http:\/\/schema.org"/
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  CROSSREF_XML_REGEX = /<doi_batch/
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+ DEPOSITOR_REGEX = /<depositor_name>test<\/depositor_name>/
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  DATACITE_REGEX = /"types": {/
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  BIBTEX_REGEX = /@article{https:\/\/doi.org\/10.7554\/elife.01567/
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  BIBTEX_DATA_REGEX = /@misc{https:\/\/doi.org\/10.5061\/dryad.8515/
@@ -141,6 +142,12 @@ describe Commonmeta::CLI do
141
142
  expect { subject.convert id }.to output(DATACITE_REGEX).to_stdout
142
143
  end
143
144
 
145
+ it 'to crossref_xml' do
146
+ subject.options = { to: "crossref_xml", depositor: "test", email: "info@example.org", registrant: "test" }
147
+ expect { subject.convert id }.to output(CROSSREF_XML_REGEX).to_stdout
148
+ expect { subject.convert id }.to output(DEPOSITOR_REGEX).to_stdout
149
+ end
150
+
144
151
  # TODO
145
152
  # it 'to bibtex' do
146
153
  # subject.options = { to: "bibtex" }
@@ -166,6 +173,12 @@ describe Commonmeta::CLI do
166
173
  subject.options = { to: "datacite" }
167
174
  expect { subject.convert file }.to output(DATACITE_REGEX).to_stdout
168
175
  end
176
+
177
+ it 'to crossref_xml' do
178
+ subject.options = { to: "crossref_xml", depositor: "test", email: "info@example.org", registrant: "test" }
179
+ expect { subject.convert file }.to output(CROSSREF_XML_REGEX).to_stdout
180
+ expect { subject.convert file }.to output(DEPOSITOR_REGEX).to_stdout
181
+ end
169
182
  end
170
183
 
171
184
  context "crossref_xml", vcr: true do
@@ -209,8 +222,9 @@ describe Commonmeta::CLI do
209
222
  end
210
223
 
211
224
  it 'to crossref_xml' do
212
- subject.options = { to: "crossref_xml" }
225
+ subject.options = { to: "crossref_xml", depositor: "test", email: "info@example.org", registrant: "test" }
213
226
  expect { subject.convert file }.to output(CROSSREF_XML_REGEX).to_stdout
227
+ expect { subject.convert file }.to output(DEPOSITOR_REGEX).to_stdout
214
228
  end
215
229
 
216
230
  it 'to datacite' do
@@ -246,6 +260,12 @@ describe Commonmeta::CLI do
246
260
  expect { subject.convert file }.to output(/@article{https:\/\/doi.org\/10.5438\/4k3m-nyvg/).to_stdout
247
261
  end
248
262
 
263
+ it 'to crossref_xml' do
264
+ subject.options = { to: "crossref_xml", depositor: "test", email: "info@example.org", registrant: "test" }
265
+ expect { subject.convert file }.to output(CROSSREF_XML_REGEX).to_stdout
266
+ expect { subject.convert file }.to output(DEPOSITOR_REGEX).to_stdout
267
+ end
268
+
249
269
  it 'to datacite invalid' do
250
270
  file = fixture_path + "datacite_missing_creator.xml"
251
271
  subject.options = { to: "datacite", show_errors: "true" }
@@ -107,4 +107,111 @@ http_interactions:
107
107
  }
108
108
  ]
109
109
  recorded_at: Sun, 19 Mar 2023 17:35:44 GMT
110
+ - request:
111
+ method: get
112
+ uri: https://api.crossref.org/members/4374
113
+ body:
114
+ encoding: UTF-8
115
+ string: ''
116
+ headers:
117
+ Connection:
118
+ - close
119
+ Host:
120
+ - api.crossref.org
121
+ User-Agent:
122
+ - http.rb/5.1.1
123
+ response:
124
+ status:
125
+ code: 200
126
+ message: OK
127
+ headers:
128
+ Date:
129
+ - Fri, 14 Apr 2023 14:56:25 GMT
130
+ Content-Type:
131
+ - application/json
132
+ Transfer-Encoding:
133
+ - chunked
134
+ Access-Control-Expose-Headers:
135
+ - Link
136
+ Access-Control-Allow-Headers:
137
+ - X-Requested-With, Accept, Accept-Encoding, Accept-Charset, Accept-Language,
138
+ Accept-Ranges, Cache-Control
139
+ Access-Control-Allow-Origin:
140
+ - "*"
141
+ Server:
142
+ - Jetty(9.4.40.v20210413)
143
+ X-Ratelimit-Limit:
144
+ - '50'
145
+ X-Ratelimit-Interval:
146
+ - 1s
147
+ X-Api-Pool:
148
+ - public
149
+ X-Rate-Limit-Limit:
150
+ - '50'
151
+ X-Rate-Limit-Interval:
152
+ - 1s
153
+ Permissions-Policy:
154
+ - interest-cohort=()
155
+ Connection:
156
+ - close
157
+ body:
158
+ encoding: UTF-8
159
+ string: '{"status":"ok","message-type":"member","message-version":"1.0.0","message":{"last-status-check-time":1681445056270,"primary-name":"eLife
160
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