comana 0.0.7 → 0.0.8
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- data/Gemfile +1 -1
- data/VERSION +1 -1
- data/comana.gemspec +5 -5
- data/lib/comana/machineinfo.rb +4 -1
- data/lib/comana/queuesubmitter.rb +125 -35
- data/memo.txt +5 -1
- data/spec/machineinfo_spec.rb +0 -13
- data/spec/queuesubmitter_spec.rb +151 -77
- metadata +14 -14
data/Gemfile
CHANGED
@@ -6,7 +6,7 @@ source "http://rubygems.org"
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|
6
6
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# Add dependencies to develop your gem here.
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7
7
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# Include everything needed to run rake, tests, features, etc.
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8
8
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group :development do
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9
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-
gem "rspec", ">= 2.
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9
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+
gem "rspec", ">= 2.10.0"
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10
10
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gem "rdoc", ">= 3.12"
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11
11
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gem "bundler", ">= 1.1.3"
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12
12
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gem "jeweler", ">= 1.8.3"
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data/VERSION
CHANGED
@@ -1 +1 @@
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1
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-
0.0.
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1
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+
0.0.8
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data/comana.gemspec
CHANGED
@@ -5,11 +5,11 @@
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5
5
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6
6
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Gem::Specification.new do |s|
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7
7
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s.name = "comana"
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8
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-
s.version = "0.0.
|
8
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+
s.version = "0.0.8"
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9
9
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|
10
10
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s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
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11
11
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s.authors = ["ippei94da"]
|
12
|
-
s.date = "2012-05-
|
12
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+
s.date = "2012-05-18"
|
13
13
|
s.description = "Comana, COmputation MANAger,\n is a software to provide a framework of\n managing scientific computing.\n Researchers on computing have to check calculation and\n generate new calculation and execute, repeatedly.\n The abstract class that this gem provide would help the work.\n "
|
14
14
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s.email = "ippei94da@gmail.com"
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15
15
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s.extra_rdoc_files = [
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@@ -61,20 +61,20 @@ Gem::Specification.new do |s|
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61
61
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s.specification_version = 3
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62
62
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|
63
63
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if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
|
64
|
-
s.add_development_dependency(%q<rspec>, [">= 2.
|
64
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+
s.add_development_dependency(%q<rspec>, [">= 2.10.0"])
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65
65
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s.add_development_dependency(%q<rdoc>, [">= 3.12"])
|
66
66
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s.add_development_dependency(%q<bundler>, [">= 1.1.3"])
|
67
67
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s.add_development_dependency(%q<jeweler>, [">= 1.8.3"])
|
68
68
|
s.add_development_dependency(%q<simplecov>, [">= 0"])
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69
69
|
else
|
70
|
-
s.add_dependency(%q<rspec>, [">= 2.
|
70
|
+
s.add_dependency(%q<rspec>, [">= 2.10.0"])
|
71
71
|
s.add_dependency(%q<rdoc>, [">= 3.12"])
|
72
72
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s.add_dependency(%q<bundler>, [">= 1.1.3"])
|
73
73
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s.add_dependency(%q<jeweler>, [">= 1.8.3"])
|
74
74
|
s.add_dependency(%q<simplecov>, [">= 0"])
|
75
75
|
end
|
76
76
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else
|
77
|
-
s.add_dependency(%q<rspec>, [">= 2.
|
77
|
+
s.add_dependency(%q<rspec>, [">= 2.10.0"])
|
78
78
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s.add_dependency(%q<rdoc>, [">= 3.12"])
|
79
79
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s.add_dependency(%q<bundler>, [">= 1.1.3"])
|
80
80
|
s.add_dependency(%q<jeweler>, [">= 1.8.3"])
|
data/lib/comana/machineinfo.rb
CHANGED
@@ -1,46 +1,98 @@
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1
1
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#! /usr/bin/env ruby
|
2
2
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# coding: utf-8
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3
3
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|
4
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+
require "fileutils"
|
4
5
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require "comana/computationmanager.rb"
|
5
6
|
require "comana/machineinfo.rb"
|
7
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+
require "optparse"
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6
8
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|
7
9
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#
|
8
10
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#
|
9
11
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#
|
10
12
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class QueueSubmitter < ComputationManager
|
11
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-
|
13
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+
SCRIPT = "script.sh"
|
14
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+
PROLOGUE = "prologue_script.sh"
|
15
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+
EPILOGUE = "epilogue_script.sh"
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12
16
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WALLTIME = "7:00:00:00" # day:hour:minute:second
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13
17
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|
14
18
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class PrepareNextError < Exception; end
|
15
19
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class InitializeError < Exception; end
|
20
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+
class InvalidArgumentError < Exception; end
|
16
21
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|
17
22
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# opts is a hash includes data belows:
|
18
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-
# :
|
19
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-
# :
|
20
|
-
# :n => name of cluster.
|
21
|
-
# :s => flag for speed prior mode (option).
|
23
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+
# :command => command line.
|
24
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+
# :cluster => name of cluster.
|
22
25
|
# :machineinfo => MachineInfo class instance.
|
23
|
-
#
|
24
|
-
#
|
26
|
+
# :directory => calculation as ComputationManager subclass.
|
27
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+
# Note that this is not directory name, to check to be calculatable.
|
25
28
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def initialize(opts)
|
26
|
-
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27
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-
|
28
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-
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29
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-
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30
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-
|
31
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-
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32
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-
@
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-
@
|
34
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-
@
|
35
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-
@
|
36
|
-
|
29
|
+
[:directory, :command, :number, :cluster, :fileserver].each do |symbol|
|
30
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+
raise InitializeError, "No #{symbol}" unless opts.has_key?(symbol)
|
31
|
+
end
|
32
|
+
|
33
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+
super(opts[:directory].dir)
|
34
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+
@command = opts[:command]
|
35
|
+
@cluster = opts[:cluster]
|
36
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+
@number = opts[:number]
|
37
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+
@fileserver = opts[:fileserver]
|
38
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+
@lockdir = "lock_queuesubmitter"
|
39
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+
end
|
40
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+
|
41
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+
def self.parse_options(ary, machineinfo)
|
42
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+
## option analysis
|
43
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+
opts = {}
|
44
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+
op = OptionParser.new
|
45
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+
op.on("-c cluster", "--cluster" , "Cluster name."){|v| opts[:cluster] = v }
|
46
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+
op.on("-n number", "--number", "Indicate node number, or key in ~/.machineinfo."){|v|
|
47
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+
opts[:number] = v
|
48
|
+
}
|
49
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+
op.parse!(ary)
|
50
|
+
|
51
|
+
unless ary.size == 1
|
52
|
+
raise InitializeError, "Not one directory indicated: #{ary.join(", ")}."
|
53
|
+
end
|
54
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+
|
55
|
+
opts[:fileserver] = machineinfo.get_info("fileserver")
|
56
|
+
|
57
|
+
unless opts[:cluster]
|
58
|
+
raise InvalidArgumentError,
|
59
|
+
"-c option not set."
|
60
|
+
end
|
61
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+
|
62
|
+
# Number of nodes: number, key string, or default value(1).
|
63
|
+
if opts[:number].to_i > 0
|
64
|
+
opts[:number] = opts[:number].to_i
|
65
|
+
else
|
66
|
+
number = machineinfo.get_info(opts[:cluster])[opts[:number]]
|
67
|
+
if number
|
68
|
+
opts[:number] = number
|
69
|
+
else
|
70
|
+
raise InvalidArgumentError,
|
71
|
+
"No entry '#{opts[:number]}' in machineinfo: #{machineinfo.inspect}."
|
72
|
+
end
|
73
|
+
end
|
74
|
+
opts[:number] ||= 1
|
75
|
+
|
76
|
+
opts
|
37
77
|
end
|
38
78
|
|
39
79
|
def calculate
|
40
|
-
|
41
|
-
|
80
|
+
# prologue
|
81
|
+
prologue_path = "#{@dir}/#{PROLOGUE}"
|
82
|
+
File.open(prologue_path, "w") { |io| dump_prologue(io) }
|
83
|
+
FileUtils.chmod(0700, prologue_path)
|
84
|
+
|
85
|
+
# epilogue
|
86
|
+
epilogue_path = "#{@dir}/#{EPILOGUE}"
|
87
|
+
File.open(epilogue_path, "w") { |io| dump_epilogue(io) }
|
88
|
+
FileUtils.chmod(0700, epilogue_path)
|
42
89
|
|
43
|
-
|
90
|
+
# script
|
91
|
+
script_path = "#{@dir}/#{SCRIPT}"
|
92
|
+
File.open(script_path, "w") { |io| dump_script(io) }
|
93
|
+
|
94
|
+
# run
|
95
|
+
system("cd #{@dir}; qsub -l prologue=#{prologue_path} -l epilogue=#{epilogue_path} #{script_path}")
|
44
96
|
end
|
45
97
|
|
46
98
|
# Raise QueueSubmitter::PrepareNextError when called.
|
@@ -55,25 +107,40 @@ class QueueSubmitter < ComputationManager
|
|
55
107
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|
56
108
|
private
|
57
109
|
|
58
|
-
def
|
59
|
-
|
60
|
-
|
61
|
-
|
62
|
-
|
110
|
+
def dump_prologue(io = nil)
|
111
|
+
str = [
|
112
|
+
'#! /bin/sh',
|
113
|
+
'LOGFILE="${PBS_O_WORKDIR}/prologue_script.log"',
|
114
|
+
'echo "hostname : `hostname`" >> $LOGFILE',
|
115
|
+
'echo "job id : $1" >> $LOGFILE',
|
116
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+
'echo "job execution user name : $2" >> $LOGFILE',
|
117
|
+
'echo "job execution group name : $3" >> $LOGFILE',
|
118
|
+
'echo "job name : $4" >> $LOGFILE',
|
119
|
+
'echo "list of requested resource limits: $5" >> $LOGFILE',
|
120
|
+
'echo "job execution queue : $6" >> $LOGFILE',
|
121
|
+
'echo "job account : $7" >> $LOGFILE',
|
122
|
+
'echo "PBS_O_WORKDIR : ${PBS_O_WORKDIR}" >> $LOGFILE',
|
123
|
+
'echo "nodes in pbs_nodefile : " >> $LOGFILE',
|
124
|
+
'cat ${PBS_NODEFILE} >> $LOGFILE',
|
125
|
+
'exit 0',
|
126
|
+
].join("\n")
|
63
127
|
|
128
|
+
if io
|
129
|
+
io.puts str
|
130
|
+
else
|
131
|
+
return str
|
132
|
+
end
|
133
|
+
end
|
134
|
+
|
135
|
+
def dump_script(io = nil)
|
64
136
|
str = [
|
65
137
|
"#! /bin/sh",
|
66
138
|
"#PBS -N #{@dir}",
|
67
|
-
"#PBS -l nodes=#{
|
139
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+
"#PBS -l nodes=#{@number}:ppn=1:#{@cluster},walltime=#{WALLTIME}",
|
68
140
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"#PBS -j oe",
|
69
|
-
"
|
70
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-
"rsync -azq --delete #{fs}:${PBS_O_WORKDIR}/ ${PBS_O_WORKDIR} && \\",
|
71
|
-
"cp ${PBS_NODEFILE} ${PBS_O_WORKDIR}/pbs_nodefile && \\",
|
141
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+
"",
|
72
142
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"cd ${PBS_O_WORKDIR} && \\",
|
73
|
-
"#{@command}
|
74
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-
"rsync -azq --delete ${PBS_O_WORKDIR}/ #{fs}:${PBS_O_WORKDIR} && \\",
|
75
|
-
"#rm -rf ${PBS_O_WORKDIR}",
|
76
|
-
"mv ${PBS_O_WORKDIR} ~/.trash",
|
143
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+
"#{@command}",
|
77
144
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].join("\n")
|
78
145
|
|
79
146
|
if io
|
@@ -82,6 +149,29 @@ class QueueSubmitter < ComputationManager
|
|
82
149
|
return str
|
83
150
|
end
|
84
151
|
end
|
85
|
-
end
|
86
152
|
|
153
|
+
def dump_epilogue(io = nil)
|
154
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+
str = [
|
155
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+
'#! /bin/sh',
|
156
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+
'LOGFILE="${PBS_O_WORKDIR}/epilogue_script.log"',
|
157
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+
'echo "job id : $1" >> $LOGFILE',
|
158
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+
'echo "job execution user name : $2" >> $LOGFILE',
|
159
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+
'echo "job execution group name : $3" >> $LOGFILE',
|
160
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+
'echo "job name : $4" >> $LOGFILE',
|
161
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+
'echo "session id : $5" >> $LOGFILE',
|
162
|
+
'echo "list of requested resource limits: $6" >> $LOGFILE',
|
163
|
+
'echo "list of resources used by job : $7" >> $LOGFILE',
|
164
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+
'echo "job execution queue : $8" >> $LOGFILE',
|
165
|
+
'echo "job account : $9" >> $LOGFILE',
|
166
|
+
'echo "job exit code : $10" >> $LOGFILE',
|
167
|
+
'exit 0',
|
168
|
+
].join("\n")
|
169
|
+
|
170
|
+
if io
|
171
|
+
io.puts str
|
172
|
+
else
|
173
|
+
return str
|
174
|
+
end
|
175
|
+
end
|
176
|
+
end
|
87
177
|
|
data/memo.txt
CHANGED
@@ -4,7 +4,11 @@ Comana don't have information of output files.
|
|
4
4
|
Because it is difficult to define final output and to deal systematically.
|
5
5
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e.g., repeated calculation till convergence.
|
6
6
|
|
7
|
-
0.0.
|
7
|
+
0.0.8 release
|
8
|
+
Changed queuesubmitter option. (long name symbol)
|
9
|
+
Add prologue and epilogue to QueueSubmitter.
|
10
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+
|
11
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+
0.0.7 release
|
8
12
|
Bugfix of danger to rsync large directory:
|
9
13
|
- bin/submitqueue is removed.
|
10
14
|
- lib/queuesubmitter.rb is modified.
|
data/spec/machineinfo_spec.rb
CHANGED
@@ -10,23 +10,10 @@ describe MachineInfo do
|
|
10
10
|
describe "#load_file" do
|
11
11
|
context "not exist machineinfo file" do
|
12
12
|
DATA_FILE = "spec/machineinfo"
|
13
|
-
#DATA_FILE = "spec/dummy.yaml"
|
14
|
-
#data = {
|
15
|
-
# "SeriesA" => { "data1" => "A-1", "data2" => "A-2" },
|
16
|
-
# "SeriesB" => { "data1" => "B-1", "data2" => "B-2" },
|
17
|
-
#}
|
18
|
-
#io = File.open(DATA_FILE, "w")
|
19
|
-
#YAML.dump(data, io)
|
20
|
-
#io.close
|
21
|
-
|
22
|
-
#pp File.open(DATA_FILE, "r").readlines
|
23
|
-
|
24
13
|
it { lambda{MachineInfo.load_file(DATA_FILE)}.should_not raise_error}
|
25
14
|
|
26
15
|
mi00 = MachineInfo.load_file(DATA_FILE)
|
27
16
|
it {mi00.get_info("SeriesA").should == { "data1" => "A-1", "data2" => "A-2" } }
|
28
|
-
|
29
|
-
#FileUtils.rm DATA_FILE
|
30
17
|
end
|
31
18
|
|
32
19
|
context "not exist machineinfo file" do
|
data/spec/queuesubmitter_spec.rb
CHANGED
@@ -3,87 +3,145 @@
|
|
3
3
|
|
4
4
|
require File.expand_path(File.dirname(__FILE__) + "/spec_helper")
|
5
5
|
require "comana/queuesubmitter.rb"
|
6
|
+
require "comana/computationmanager.rb"
|
6
7
|
require "comana/machineinfo.rb"
|
7
8
|
|
8
9
|
class QueueSubmitter < ComputationManager
|
9
|
-
public :
|
10
|
+
public :dump_prologue
|
11
|
+
public :dump_script
|
12
|
+
public :dump_epilogue
|
10
13
|
end
|
11
14
|
|
12
15
|
#describe QueueSubmitter, "with chars to be escaped" do
|
13
16
|
describe QueueSubmitter do
|
14
17
|
describe "#initialize" do
|
15
|
-
context "opts not have :
|
18
|
+
context "opts not have :directory" do
|
16
19
|
opts = {
|
17
|
-
#:
|
18
|
-
:
|
19
|
-
:
|
20
|
-
:
|
21
|
-
:
|
22
|
-
"fileserver" => "FS",
|
23
|
-
"Nodes" => { "speed_nodes" => 4, "economy_nodes" => 1, }
|
24
|
-
)
|
20
|
+
#:directory => "dir_name",
|
21
|
+
:command => "command_line",
|
22
|
+
:cluster => "Nodes",
|
23
|
+
:number => 4,
|
24
|
+
:fileserver => "FS",
|
25
25
|
}
|
26
26
|
it {lambda{QueueSubmitter.new(opts)}.should raise_error(
|
27
27
|
QueueSubmitter::InitializeError)}
|
28
28
|
end
|
29
29
|
|
30
|
-
context "opts not have :
|
30
|
+
context "opts not have :command" do
|
31
31
|
opts = {
|
32
|
-
:
|
33
|
-
#:
|
34
|
-
:
|
35
|
-
:
|
36
|
-
:
|
37
|
-
"fileserver" => "FS",
|
38
|
-
"Nodes" => { "speed_nodes" => 4, "economy_nodes" => 1, }
|
39
|
-
)
|
32
|
+
:directory => ComputationManager.new("dir_name"),
|
33
|
+
#:command => "command_line",
|
34
|
+
:cluster => "Nodes",
|
35
|
+
:number => 4,
|
36
|
+
:fileserver => "FS",
|
40
37
|
}
|
41
38
|
it {lambda{QueueSubmitter.new(opts)}.should raise_error(
|
42
39
|
QueueSubmitter::InitializeError)}
|
43
40
|
end
|
44
41
|
|
45
|
-
context "opts not have :
|
42
|
+
context "opts not have :cluster" do
|
46
43
|
opts = {
|
47
|
-
:
|
48
|
-
:
|
49
|
-
#:
|
50
|
-
:
|
51
|
-
:
|
52
|
-
"fileserver" => "FS",
|
53
|
-
"Nodes" => { "speed_nodes" => 4, "economy_nodes" => 1, }
|
54
|
-
)
|
44
|
+
:directory => ComputationManager.new("dir_name"),
|
45
|
+
:command => "command_line",
|
46
|
+
#:cluster => "Nodes",
|
47
|
+
:number => 4,
|
48
|
+
:fileserver => "FS",
|
55
49
|
}
|
56
50
|
it {lambda{QueueSubmitter.new(opts)}.should raise_error(
|
57
51
|
QueueSubmitter::InitializeError)}
|
58
52
|
end
|
59
53
|
|
60
|
-
context "opts not have :
|
54
|
+
context "opts not have :command" do
|
61
55
|
opts = {
|
62
|
-
:
|
63
|
-
|
64
|
-
:
|
65
|
-
:
|
66
|
-
|
67
|
-
# "fileserver" => "FS",
|
68
|
-
# "Nodes" => { "speed_nodes" => 4, "economy_nodes" => 1, }
|
69
|
-
#)
|
56
|
+
:directory => ComputationManager.new("dir_name"),
|
57
|
+
#:command => "command_line",
|
58
|
+
:cluster => "Nodes",
|
59
|
+
:number => 4,
|
60
|
+
:fileserver => "FS",
|
70
61
|
}
|
71
62
|
it {lambda{QueueSubmitter.new(opts)}.should raise_error(
|
72
63
|
QueueSubmitter::InitializeError)}
|
73
64
|
end
|
74
65
|
end
|
75
66
|
|
76
|
-
describe "#
|
67
|
+
describe "#self.parse_options" do
|
77
68
|
before do
|
78
|
-
|
79
|
-
|
80
|
-
:c => "command_line",
|
81
|
-
:n => "Nodes",
|
82
|
-
:s => true,
|
83
|
-
:machineinfo => MachineInfo.new(
|
69
|
+
@machine_info = MachineInfo.new(
|
70
|
+
{
|
84
71
|
"fileserver" => "FS",
|
85
|
-
"
|
86
|
-
|
72
|
+
"CLUSTER" => {
|
73
|
+
"speed" => 2,
|
74
|
+
"economy" => 1,
|
75
|
+
},
|
76
|
+
}
|
77
|
+
)
|
78
|
+
end
|
79
|
+
|
80
|
+
context "-c not indicated" do
|
81
|
+
ary = %w( a -n 1 )
|
82
|
+
it {lambda{QueueSubmitter.parse_options(ary, @machine_info)}.should raise_error(
|
83
|
+
QueueSubmitter::InvalidArgumentError)}
|
84
|
+
end
|
85
|
+
|
86
|
+
#context "-n not indicated" do
|
87
|
+
# ary = %w( a -c CLUSTER_DUMMY )
|
88
|
+
# it {lambda{QueueSubmitter.parse_options(ary, @machine_info)}.should raise_error(MachineInfo::NoEntryError)}
|
89
|
+
#end
|
90
|
+
|
91
|
+
context "-n not indicated" do
|
92
|
+
ary = %w( a -c CLUSTER )
|
93
|
+
it {lambda{QueueSubmitter.parse_options(ary, @machine_info)}.should raise_error(QueueSubmitter::InvalidArgumentError)}
|
94
|
+
end
|
95
|
+
|
96
|
+
context "-c and -n number indicated" do
|
97
|
+
ary = %w( a -c CLUSTER -n 1 )
|
98
|
+
it {lambda{QueueSubmitter.parse_options(ary, @machine_info)}.should_not raise_error}
|
99
|
+
end
|
100
|
+
|
101
|
+
end
|
102
|
+
|
103
|
+
describe "#dump_prologue" do
|
104
|
+
before do
|
105
|
+
opts = {
|
106
|
+
:directory => ComputationManager.new("spec/not_started"),
|
107
|
+
:command => "command_line",
|
108
|
+
:cluster => "Nodes",
|
109
|
+
:number => 4,
|
110
|
+
:fileserver => "FS",
|
111
|
+
}
|
112
|
+
@qs00 = QueueSubmitter.new(opts)
|
113
|
+
|
114
|
+
@correct = [
|
115
|
+
'#! /bin/sh',
|
116
|
+
'LOGFILE="${PBS_O_WORKDIR}/prologue_script.log"',
|
117
|
+
'echo "hostname : `hostname`" >> $LOGFILE',
|
118
|
+
'echo "job id : $1" >> $LOGFILE',
|
119
|
+
'echo "job execution user name : $2" >> $LOGFILE',
|
120
|
+
'echo "job execution group name : $3" >> $LOGFILE',
|
121
|
+
'echo "job name : $4" >> $LOGFILE',
|
122
|
+
'echo "list of requested resource limits: $5" >> $LOGFILE',
|
123
|
+
'echo "job execution queue : $6" >> $LOGFILE',
|
124
|
+
'echo "job account : $7" >> $LOGFILE',
|
125
|
+
'echo "PBS_O_WORKDIR : ${PBS_O_WORKDIR}" >> $LOGFILE',
|
126
|
+
'echo "nodes in pbs_nodefile : " >> $LOGFILE',
|
127
|
+
'cat ${PBS_NODEFILE} >> $LOGFILE',
|
128
|
+
'exit 0',
|
129
|
+
].join("\n")
|
130
|
+
end
|
131
|
+
|
132
|
+
context "speed mode" do
|
133
|
+
it { @qs00.dump_prologue.should == @correct}
|
134
|
+
end
|
135
|
+
end
|
136
|
+
|
137
|
+
describe "#dump_script" do
|
138
|
+
before do
|
139
|
+
opts = {
|
140
|
+
:directory => ComputationManager.new("spec/not_started"),
|
141
|
+
:command => "command_line",
|
142
|
+
:cluster => "Nodes",
|
143
|
+
:number => 4,
|
144
|
+
:fileserver => "FS",
|
87
145
|
}
|
88
146
|
@qs00 = QueueSubmitter.new(opts)
|
89
147
|
|
@@ -92,42 +150,61 @@ describe QueueSubmitter do
|
|
92
150
|
"#PBS -N spec/not_started",
|
93
151
|
"#PBS -l nodes=4:ppn=1:Nodes,walltime=7:00:00:00",
|
94
152
|
"#PBS -j oe",
|
95
|
-
"
|
96
|
-
"rsync -azq --delete FS:${PBS_O_WORKDIR}/ ${PBS_O_WORKDIR} && \\",
|
97
|
-
"cp ${PBS_NODEFILE} ${PBS_O_WORKDIR}/pbs_nodefile && \\",
|
153
|
+
"",
|
98
154
|
"cd ${PBS_O_WORKDIR} && \\",
|
99
|
-
"command_line
|
100
|
-
"rsync -azq --delete ${PBS_O_WORKDIR}/ FS:${PBS_O_WORKDIR} && \\",
|
101
|
-
"#rm -rf ${PBS_O_WORKDIR}",
|
102
|
-
"mv ${PBS_O_WORKDIR} ~/.trash",
|
155
|
+
"command_line",
|
103
156
|
].join("\n")
|
104
157
|
end
|
105
158
|
|
106
159
|
context "speed mode" do
|
107
|
-
it { @qs00.
|
160
|
+
it { @qs00.dump_script.should == @correct}
|
161
|
+
end
|
162
|
+
end
|
108
163
|
|
109
|
-
|
110
|
-
|
111
|
-
|
112
|
-
|
113
|
-
|
114
|
-
|
115
|
-
|
164
|
+
describe "#dump_epilogue" do
|
165
|
+
before do
|
166
|
+
opts = {
|
167
|
+
:directory => ComputationManager.new("spec/not_started"),
|
168
|
+
:command => "command_line",
|
169
|
+
:cluster => "Nodes",
|
170
|
+
:number => 4,
|
171
|
+
:fileserver => "FS",
|
172
|
+
}
|
173
|
+
@qs00 = QueueSubmitter.new(opts)
|
174
|
+
|
175
|
+
@correct = [
|
176
|
+
'#! /bin/sh',
|
177
|
+
'LOGFILE="${PBS_O_WORKDIR}/epilogue_script.log"',
|
178
|
+
'echo "job id : $1" >> $LOGFILE',
|
179
|
+
'echo "job execution user name : $2" >> $LOGFILE',
|
180
|
+
'echo "job execution group name : $3" >> $LOGFILE',
|
181
|
+
'echo "job name : $4" >> $LOGFILE',
|
182
|
+
'echo "session id : $5" >> $LOGFILE',
|
183
|
+
'echo "list of requested resource limits: $6" >> $LOGFILE',
|
184
|
+
'echo "list of resources used by job : $7" >> $LOGFILE',
|
185
|
+
'echo "job execution queue : $8" >> $LOGFILE',
|
186
|
+
'echo "job account : $9" >> $LOGFILE',
|
187
|
+
'echo "job exit code : $10" >> $LOGFILE',
|
188
|
+
'exit 0',
|
189
|
+
].join("\n")
|
190
|
+
end
|
191
|
+
|
192
|
+
context "speed mode" do
|
193
|
+
it { @qs00.dump_epilogue.should == @correct}
|
116
194
|
end
|
117
195
|
end
|
118
196
|
|
197
|
+
|
198
|
+
|
119
199
|
describe "#finished?" do
|
120
200
|
context "locked" do
|
121
201
|
it do
|
122
202
|
opts = {
|
123
|
-
:
|
124
|
-
:
|
125
|
-
:
|
126
|
-
:
|
127
|
-
:
|
128
|
-
"fileserver" => "FS",
|
129
|
-
"Nodes" => { "speed_nodes" => 4, "economy_nodes" => 1, }
|
130
|
-
)
|
203
|
+
:directory => ComputationManager.new("spec/queuesubmitter/locked"),
|
204
|
+
:command => "command_line",
|
205
|
+
:cluster => "Nodes",
|
206
|
+
:number => 4,
|
207
|
+
:fileserver => "FS",
|
131
208
|
}
|
132
209
|
@qs00 = QueueSubmitter.new(opts)
|
133
210
|
|
@@ -138,14 +215,11 @@ describe QueueSubmitter do
|
|
138
215
|
context "unlocked" do
|
139
216
|
it do
|
140
217
|
opts = {
|
141
|
-
:
|
142
|
-
:
|
143
|
-
:
|
144
|
-
:
|
145
|
-
:
|
146
|
-
"fileserver" => "FS",
|
147
|
-
"Nodes" => { "speed_nodes" => 4, "economy_nodes" => 1, }
|
148
|
-
)
|
218
|
+
:directory => ComputationManager.new("spec/queuesubmitter/unlocked"),
|
219
|
+
:command => "command_line",
|
220
|
+
:cluster => "Nodes",
|
221
|
+
:number => 4,
|
222
|
+
:fileserver => "FS",
|
149
223
|
}
|
150
224
|
@qs00 = QueueSubmitter.new(opts)
|
151
225
|
|
metadata
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: comana
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 0.0.
|
4
|
+
version: 0.0.8
|
5
5
|
prerelease:
|
6
6
|
platform: ruby
|
7
7
|
authors:
|
@@ -9,22 +9,22 @@ authors:
|
|
9
9
|
autorequire:
|
10
10
|
bindir: bin
|
11
11
|
cert_chain: []
|
12
|
-
date: 2012-05-
|
12
|
+
date: 2012-05-18 00:00:00.000000000 Z
|
13
13
|
dependencies:
|
14
14
|
- !ruby/object:Gem::Dependency
|
15
15
|
name: rspec
|
16
|
-
requirement: &
|
16
|
+
requirement: &71401920 !ruby/object:Gem::Requirement
|
17
17
|
none: false
|
18
18
|
requirements:
|
19
19
|
- - ! '>='
|
20
20
|
- !ruby/object:Gem::Version
|
21
|
-
version: 2.
|
21
|
+
version: 2.10.0
|
22
22
|
type: :development
|
23
23
|
prerelease: false
|
24
|
-
version_requirements: *
|
24
|
+
version_requirements: *71401920
|
25
25
|
- !ruby/object:Gem::Dependency
|
26
26
|
name: rdoc
|
27
|
-
requirement: &
|
27
|
+
requirement: &71401380 !ruby/object:Gem::Requirement
|
28
28
|
none: false
|
29
29
|
requirements:
|
30
30
|
- - ! '>='
|
@@ -32,10 +32,10 @@ dependencies:
|
|
32
32
|
version: '3.12'
|
33
33
|
type: :development
|
34
34
|
prerelease: false
|
35
|
-
version_requirements: *
|
35
|
+
version_requirements: *71401380
|
36
36
|
- !ruby/object:Gem::Dependency
|
37
37
|
name: bundler
|
38
|
-
requirement: &
|
38
|
+
requirement: &71400960 !ruby/object:Gem::Requirement
|
39
39
|
none: false
|
40
40
|
requirements:
|
41
41
|
- - ! '>='
|
@@ -43,10 +43,10 @@ dependencies:
|
|
43
43
|
version: 1.1.3
|
44
44
|
type: :development
|
45
45
|
prerelease: false
|
46
|
-
version_requirements: *
|
46
|
+
version_requirements: *71400960
|
47
47
|
- !ruby/object:Gem::Dependency
|
48
48
|
name: jeweler
|
49
|
-
requirement: &
|
49
|
+
requirement: &71400540 !ruby/object:Gem::Requirement
|
50
50
|
none: false
|
51
51
|
requirements:
|
52
52
|
- - ! '>='
|
@@ -54,10 +54,10 @@ dependencies:
|
|
54
54
|
version: 1.8.3
|
55
55
|
type: :development
|
56
56
|
prerelease: false
|
57
|
-
version_requirements: *
|
57
|
+
version_requirements: *71400540
|
58
58
|
- !ruby/object:Gem::Dependency
|
59
59
|
name: simplecov
|
60
|
-
requirement: &
|
60
|
+
requirement: &71399840 !ruby/object:Gem::Requirement
|
61
61
|
none: false
|
62
62
|
requirements:
|
63
63
|
- - ! '>='
|
@@ -65,7 +65,7 @@ dependencies:
|
|
65
65
|
version: '0'
|
66
66
|
type: :development
|
67
67
|
prerelease: false
|
68
|
-
version_requirements: *
|
68
|
+
version_requirements: *71399840
|
69
69
|
description: ! "Comana, COmputation MANAger,\n is a software to provide a framework
|
70
70
|
of\n managing scientific computing.\n Researchers on computing have to check
|
71
71
|
calculation and\n generate new calculation and execute, repeatedly.\n The
|
@@ -125,7 +125,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
|
|
125
125
|
version: '0'
|
126
126
|
segments:
|
127
127
|
- 0
|
128
|
-
hash:
|
128
|
+
hash: 49117789
|
129
129
|
required_rubygems_version: !ruby/object:Gem::Requirement
|
130
130
|
none: false
|
131
131
|
requirements:
|