coderunner 0.11.10 → 0.11.11
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- data/VERSION +1 -1
- data/coderunner.gemspec +3 -2
- data/lib/coderunner/system_modules/iridis.rb +30 -0
- data/lib/coderunner/system_modules/moab.rb +7 -3
- metadata +3 -2
data/VERSION
CHANGED
@@ -1 +1 @@
|
|
1
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-
0.11.
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1
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+
0.11.11
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data/coderunner.gemspec
CHANGED
@@ -5,11 +5,11 @@
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5
5
|
|
6
6
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Gem::Specification.new do |s|
|
7
7
|
s.name = "coderunner"
|
8
|
-
s.version = "0.11.
|
8
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+
s.version = "0.11.11"
|
9
9
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|
10
10
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s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
|
11
11
|
s.authors = ["Edmund Highcock"]
|
12
|
-
s.date = "2012-11-
|
12
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+
s.date = "2012-11-22"
|
13
13
|
s.description = "CodeRunner is a framework for the automated running and analysis of simulations. It automatically generates any necessary input files, organises the output data and analyses it. Because it is a modular system, it can easily be customised to work with any system and any simulation code. One of its greatest strengths is that it is independent of any one simulation code; thus it can easily plot and compare the data from different codes."
|
14
14
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s.email = "edmundhighcock@sourceforge.net"
|
15
15
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s.executables = ["coderunner"]
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@@ -52,6 +52,7 @@ Gem::Specification.new do |s|
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52
52
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"lib/coderunner/system_modules/genericlinux_testsystem.rb",
|
53
53
|
"lib/coderunner/system_modules/hector.rb",
|
54
54
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"lib/coderunner/system_modules/helios.rb",
|
55
|
+
"lib/coderunner/system_modules/iridis.rb",
|
55
56
|
"lib/coderunner/system_modules/juropa.rb",
|
56
57
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"lib/coderunner/system_modules/macosx.rb",
|
57
58
|
"lib/coderunner/system_modules/moab.rb",
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@@ -0,0 +1,30 @@
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|
1
|
+
class CodeRunner
|
2
|
+
require SCRIPT_FOLDER + '/system_modules/moab.rb'
|
3
|
+
module Iridis
|
4
|
+
include Moab
|
5
|
+
def batch_script
|
6
|
+
raise "Please specify project" unless @project
|
7
|
+
super
|
8
|
+
end
|
9
|
+
def max_ppn
|
10
|
+
12
|
11
|
+
end
|
12
|
+
def mpi_prog
|
13
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+
"mpirun"
|
14
|
+
end
|
15
|
+
def execute
|
16
|
+
if ((prefix = ENV['CODE_RUNNER_LAUNCHER']).size > 0 rescue false)
|
17
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+
launch_id = "#{Time.now.to_i}#{$$}"
|
18
|
+
fname = ENV['HOME'] + "/.coderunner_to_launch_#{prefix}/#{launch_id}"
|
19
|
+
File.open(fname + '.start', 'w'){|file| file.puts "cd #{Dir.pwd};#{run_command}"}
|
20
|
+
sleep 1 until FileTest.exist? fname + '.pid'
|
21
|
+
pid = File.read(fname + '.pid').to_i
|
22
|
+
FileUtils.rm fname + '.pid'
|
23
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+
return pid
|
24
|
+
else
|
25
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+
File.open(batch_script_file, 'w'){|file| file.puts batch_script + run_command + "\n"}
|
26
|
+
pid = %x[qsub -q #@project #{batch_script_file}].to_i
|
27
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+
end
|
28
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+
end
|
29
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+
end
|
30
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+
end
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@@ -17,10 +17,14 @@ EOF
|
|
17
17
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%x[cat #{ENV['HOME']}/.coderunner_to_launch_#{prefix}/queue_status.txt] +
|
18
18
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%x[cat #{ENV['HOME']}/.coderunner_to_launch_#{prefix}/queue_status2.txt]
|
19
19
|
else
|
20
|
-
%x[qstat | grep $USER]
|
20
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+
%x[qstat -q consort | grep $USER]
|
21
21
|
end
|
22
22
|
end
|
23
23
|
|
24
|
+
def mpi_prog
|
25
|
+
"aprun"
|
26
|
+
end
|
27
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+
|
24
28
|
def run_command
|
25
29
|
# "qsub #{batch_script_file}"
|
26
30
|
if (ENV['CODE_RUNNER_LAUNCHER'].size > 0 rescue false)
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@@ -28,7 +32,7 @@ EOF
|
|
28
32
|
else
|
29
33
|
nodes, ppn = @nprocs.split(/x/)
|
30
34
|
nprocstot = nodes.to_i * ppn.to_i
|
31
|
-
"
|
35
|
+
"#{mpi_prog} -n #{nprocstot} -N #{ppn} #{executable_location}/#{executable_name} #{parameter_string}"
|
32
36
|
end
|
33
37
|
end
|
34
38
|
|
@@ -84,7 +88,7 @@ EOF
|
|
84
88
|
cd $PBS_O_WORKDIR
|
85
89
|
echo "workdir: $PBS_O_WORKDIR"
|
86
90
|
|
87
|
-
echo "Submitting #{nodes}x#{ppn} job on
|
91
|
+
echo "Submitting #{nodes}x#{ppn} job on #{CodeRunner::SYS} for project #@project..."
|
88
92
|
|
89
93
|
|
90
94
|
EOF
|
metadata
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: coderunner
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 0.11.
|
4
|
+
version: 0.11.11
|
5
5
|
prerelease:
|
6
6
|
platform: ruby
|
7
7
|
authors:
|
@@ -9,7 +9,7 @@ authors:
|
|
9
9
|
autorequire:
|
10
10
|
bindir: bin
|
11
11
|
cert_chain: []
|
12
|
-
date: 2012-11-
|
12
|
+
date: 2012-11-22 00:00:00.000000000 Z
|
13
13
|
dependencies:
|
14
14
|
- !ruby/object:Gem::Dependency
|
15
15
|
name: graphkit
|
@@ -219,6 +219,7 @@ files:
|
|
219
219
|
- lib/coderunner/system_modules/genericlinux_testsystem.rb
|
220
220
|
- lib/coderunner/system_modules/hector.rb
|
221
221
|
- lib/coderunner/system_modules/helios.rb
|
222
|
+
- lib/coderunner/system_modules/iridis.rb
|
222
223
|
- lib/coderunner/system_modules/juropa.rb
|
223
224
|
- lib/coderunner/system_modules/macosx.rb
|
224
225
|
- lib/coderunner/system_modules/moab.rb
|