cmdstan 0.1.5 → 0.1.9

checksums.yaml

@@ -1,7 +1,7 @@
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+  data.tar.gz: 4921aae2623e273021f1a3f37f11bd16631902f0b6fb663b36a28d8412968abf
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data/CHANGELOG.md

@@ -1,3 +1,20 @@
+## 0.1.9 (2022-02-07)
+
+- Added support for Linux ARM
+- Updated CmdStan to 2.28.2
+
+## 0.1.8 (2022-01-16)
+
+- Updated CmdStan to 2.28.1
+
+## 0.1.7 (2021-08-23)
+
+- Updated CmdStan to 2.27.0
+
+## 0.1.6 (2021-02-08)
+
+- Updated CmdStan to 2.26.0
+
 ## 0.1.5 (2020-11-21)
 
 - Added `tbb` to path for Linux

data/LICENSE.txt

@@ -1,7 +1,7 @@
 BSD 3-Clause License
 
 Copyright (c) 2019, Stan Developers and their Assignees
-Copyright (c) 2020, Andrew Kane
+Copyright (c) 2020-2022, Andrew Kane
 All rights reserved.
 
 Redistribution and use in source and binary forms, with or without

data/README.md

@@ -2,14 +2,14 @@
 
 Bayesian inference for Ruby, powered by [CmdStan](https://github.com/stan-dev/cmdstan)
 
-[![Build Status](https://github.com/ankane/cmdstan/workflows/build/badge.svg?branch=master)](https://github.com/ankane/cmdstan/actions)
+[![Build Status](https://github.com/ankane/cmdstan-ruby/workflows/build/badge.svg?branch=master)](https://github.com/ankane/cmdstan-ruby/actions)
 
 ## Installation
 
 Add this line to your application’s Gemfile:
 
 ```ruby
-gem 'cmdstan'
+gem "cmdstan"
 ```
 
 Installation can take a few minutes as CmdStan downloads and builds.
@@ -64,22 +64,22 @@ This library is modeled after the [CmdStanPy API](https://github.com/stan-dev/cm
 
 ## History
 
-View the [changelog](https://github.com/ankane/cmdstan/blob/master/CHANGELOG.md)
+View the [changelog](https://github.com/ankane/cmdstan-ruby/blob/master/CHANGELOG.md)
 
 ## Contributing
 
 Everyone is encouraged to help improve this project. Here are a few ways you can help:
 
-- [Report bugs](https://github.com/ankane/cmdstan/issues)
-- Fix bugs and [submit pull requests](https://github.com/ankane/cmdstan/pulls)
+- [Report bugs](https://github.com/ankane/cmdstan-ruby/issues)
+- Fix bugs and [submit pull requests](https://github.com/ankane/cmdstan-ruby/pulls)
 - Write, clarify, or fix documentation
 - Suggest or add new features
 
 To get started with development:
 
 ```sh
-git clone https://github.com/ankane/cmdstan.git
-cd cmdstan
+git clone https://github.com/ankane/cmdstan-ruby.git
+cd cmdstan-ruby
 bundle install
 bundle exec ruby ext/cmdstan/extconf.rb
 bundle exec rake test

data/ext/cmdstan/extconf.rb

@@ -3,13 +3,25 @@ require "fileutils"
 require "net/http"
 require "tmpdir"
 
-version = "2.25.0"
-checksum = "6bd90c6513d386f22007750f136c3f8db0132aa3e80c7298095516c68ab95a4a"
-url = "https://github.com/stan-dev/cmdstan/releases/download/v#{version}/cmdstan-#{version}.tar.gz"
+version = "2.28.2"
+# TODO figure out Mac ARM
+if RbConfig::CONFIG["host_os"] !~ /darwin/i && RbConfig::CONFIG["host_cpu"] =~ /arm|aarch64/i
+  checksum = "cd8f588a1267e3e36761b7bcdff1b7f36bf43b8ec119667654995bfa5f921fa4"
+  url =  "https://github.com/stan-dev/cmdstan/releases/download/v#{version}/cmdstan-#{version}-linux-arm64.tar.gz"
+else
+  checksum = "4e6ed2685460d7f33ddbc81ccb1e59befa7efd91e46d5b040027aab8daec4526"
+  url = "https://github.com/stan-dev/cmdstan/releases/download/v#{version}/cmdstan-#{version}.tar.gz"
+end
+
+path = ENV["CMDSTAN"] || File.expand_path("../../tmp/cmdstan", __dir__)
+FileUtils.mkdir_p(path)
+raise "Directory not empty. Run: rake clean" unless Dir.empty?(path)
 
 $stdout.sync = true
 
-def download_file(url, download_path, checksum)
+def download_file(url, download_path, checksum, redirects = 0)
+  raise "Too many redirects" if redirects > 10
+
   uri = URI(url)
   location = nil
 
@@ -35,7 +47,7 @@ def download_file(url, download_path, checksum)
         end
         puts # newline
 
-        abort "Bad checksum" if digest.hexdigest != checksum
+        abort "Bad checksum: #{digest.hexdigest}" if digest.hexdigest != checksum
       else
         abort "Bad response"
       end
@@ -43,7 +55,7 @@ def download_file(url, download_path, checksum)
   end
 
   # outside of Net::HTTP block to close previous connection
-  download_file(location, download_path, checksum) if location
+  download_file(location, download_path, checksum, redirects + 1) if location
 end
 
 # download
@@ -52,8 +64,6 @@ download_path = "#{Dir.tmpdir}/cmdstan-#{version}.tar.gz"
 download_file(url, download_path, checksum)
 
 # extract
-path = ENV["CMDSTAN"] || File.expand_path("../../tmp/cmdstan", __dir__)
-FileUtils.mkdir_p(path)
 Dir.chdir(path)
 # TODO use Gem::Package::TarReader from Rubygems
 tar_args = Gem.win_platform? ? ["--force-local"] : []
@@ -61,4 +71,5 @@ system "tar", "zxf", download_path, "-C", path, "--strip-components=1", *tar_arg
 
 # build
 make_command = Gem.win_platform? ? "mingw32-make" : "make"
-system make_command, "build"
+success = system(make_command, "build")
+raise "Build failed" unless success

data/lib/cmdstan/mcmc.rb

@@ -25,11 +25,12 @@ module CmdStan
     end
 
     def summary
-      csv_file = Tempfile.new
-      run_command "#{CmdStan.path}/bin/stansummary#{extension}", "--csv_file=#{csv_file.path}", *@output_files.map(&:path)
+      # add suffix since path can't already exist
+      path = "#{Tempfile.new.path}.csv"
+      run_command "#{CmdStan.path}/bin/stansummary#{extension}", "--csv_filename=#{path}", *@output_files.map(&:path)
 
       result = {}
-      CSV.foreach(csv_file.path, headers: true, converters: :numeric) do |row|
+      CSV.foreach(path, headers: true, converters: :numeric) do |row|
         value = row.to_h
         name = value.delete("name")
         result[name] = value if name == "lp__" || !name.end_with?("__")

data/lib/cmdstan/model.rb

@@ -61,7 +61,7 @@ module CmdStan
         args << "num_samples=#{sampling_iters.to_i}" if sampling_iters
         args += ["algorithm=hmc", "adapt", "engaged=1"]
 
-        run_command *args
+        run_command(*args)
 
         output_files << output_file
       end
@@ -99,7 +99,7 @@ module CmdStan
       args << "algorithm=#{algorithm.to_s.downcase}" if algorithm
       args << "iter=#{iter.to_i}" if iter
 
-      run_command *args
+      run_command(*args)
 
       MLE.new(output_file)
     end

data/lib/cmdstan/version.rb

@@ -1,3 +1,3 @@
 module CmdStan
-  VERSION = "0.1.5"
+  VERSION = "0.1.9"
 end

metadata

@@ -1,59 +1,17 @@
 --- !ruby/object:Gem::Specification
 name: cmdstan
 version: !ruby/object:Gem::Version
-  version: 0.1.5
+  version: 0.1.9
 platform: ruby
 authors:
 - Andrew Kane
 autorequire:
 bindir: bin
 cert_chain: []
-date: 2020-11-21 00:00:00.000000000 Z
-dependencies:
-- !ruby/object:Gem::Dependency
-  name: bundler
-  requirement: !ruby/object:Gem::Requirement
-    requirements:
-    - - ">="
-      - !ruby/object:Gem::Version
-        version: '0'
-  type: :development
-  prerelease: false
-  version_requirements: !ruby/object:Gem::Requirement
-    requirements:
-    - - ">="
-      - !ruby/object:Gem::Version
-        version: '0'
-- !ruby/object:Gem::Dependency
-  name: rake
-  requirement: !ruby/object:Gem::Requirement
-    requirements:
-    - - ">="
-      - !ruby/object:Gem::Version
-        version: '0'
-  type: :development
-  prerelease: false
-  version_requirements: !ruby/object:Gem::Requirement
-    requirements:
-    - - ">="
-      - !ruby/object:Gem::Version
-        version: '0'
-- !ruby/object:Gem::Dependency
-  name: minitest
-  requirement: !ruby/object:Gem::Requirement
-    requirements:
-    - - ">="
-      - !ruby/object:Gem::Version
-        version: '5'
-  type: :development
-  prerelease: false
-  version_requirements: !ruby/object:Gem::Requirement
-    requirements:
-    - - ">="
-      - !ruby/object:Gem::Version
-        version: '5'
+date: 2022-02-07 00:00:00.000000000 Z
+dependencies: []
 description:
-email: andrew@chartkick.com
+email: andrew@ankane.org
 executables: []
 extensions:
 - ext/cmdstan/extconf.rb
@@ -70,7 +28,7 @@ files:
 - lib/cmdstan/model.rb
 - lib/cmdstan/utils.rb
 - lib/cmdstan/version.rb
-homepage: https://github.com/ankane/cmdstan
+homepage: https://github.com/ankane/cmdstan-ruby
 licenses:
 - BSD-3-Clause
 metadata: {}
@@ -89,7 +47,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
     - !ruby/object:Gem::Version
       version: '0'
 requirements: []
-rubygems_version: 3.1.4
+rubygems_version: 3.3.3
 signing_key:
 specification_version: 4
 summary: Bayesian inference for Ruby, powered by CmdStan