cmap 0.6.0 → 0.7.0

checksums.yaml

@@ -1,7 +1,7 @@
 ---
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-  data.tar.gz: 1c4fab2a08df36492456fb29a872cf48a58391ef
+  metadata.gz: 2cd68b6863858c4d68effbc84b084161cd12bdeb
+  data.tar.gz: 40ec3cc6dab22ea9170c877f91b9e9bad364c7e8
 SHA512:
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data/lib/cmap/version.rb

@@ -1,3 +1,3 @@
 module Cmap
-  VERSION = "0.6.0"
+  VERSION = "0.7.0"
 end

data/lib/cmap.rb

@@ -7,12 +7,7 @@ require 'pry'
 require 'directed_graph'
 
 require_relative "./cmap/sanitize_graph.rb"
-require_relative "./cmap/subquery_expander.rb"
-require_relative "./cmap/edges_to_queries.rb"
 require_relative "./cmap/propositions_to_graph.rb"
-require_relative "./cmap/graph_to_sql.rb"
-require_relative "./cmap/propositions_to_sql.rb"
-require_relative "./cmap/sql_runner.rb"
 
 module Cmap
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: cmap
 version: !ruby/object:Gem::Version
-  version: 0.6.0
+  version: 0.7.0
 platform: ruby
 authors:
 - MrPowers
 autorequire: 
 bindir: exe
 cert_chain: []
-date: 2016-01-06 00:00:00.000000000 Z
+date: 2016-01-07 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: bundler
@@ -112,16 +112,9 @@ files:
 - bin/console
 - bin/setup
 - cmap.gemspec
-- example/acr.txt
-- example/cmap_to_sql.rb
 - lib/cmap.rb
-- lib/cmap/edges_to_queries.rb
-- lib/cmap/graph_to_sql.rb
 - lib/cmap/propositions_to_graph.rb
-- lib/cmap/propositions_to_sql.rb
 - lib/cmap/sanitize_graph.rb
-- lib/cmap/sql_runner.rb
-- lib/cmap/subquery_expander.rb
 - lib/cmap/version.rb
 - pictures/.DS_Store
 - pictures/cmap_example.png

data/example/acr.txt

@@ -1,32 +0,0 @@
-IGF-1 Result, Female	CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Male = 1 AND test_result_num >157) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Male = 1 AND test_result_num >167) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Male = 1 AND test_result_num >184) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Male = 1 AND test_result_num >225) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Male = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Male = 1 AND test_result_num >292) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Male = 1 AND test_result_num >323) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Male = 1 AND test_result_num >362) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Male = 1 AND test_result_num >407) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Male = 1 AND test_result_num >454) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Male = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Male = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Male = 1 AND test_result_num >551) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Male = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Male = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Male = 1 AND test_result_num >521) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Male = 1 AND test_result_num >494) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Male = 1 AND test_result_num >463) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Male = 1 AND test_result_num >430) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Male = 1 AND test_result_num >355) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Male = 1 AND test_result_num >282) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Male = 1 AND test_result_num >233) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Male = 1 AND test_result_num >216) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Male = 1 AND test_result_num >200) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Male = 1 AND test_result_num >194) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Male = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Male = 1 AND test_result_num >192) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Male = 1 AND test_result_num >179) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Male = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Male = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 ELSE 0 END	IGF-1 Result, Abn High, Male
-ai_ppdm_acr	test_result_name_stnd = 'IGF-I'	IGF-1 Result
-IGF-1 Result, Has 253 ICD9 Code	IGF-1 Result, Abnormal = 1 AND IGF-1 Result, Has 253 ICD9 Code = 1	Profile - Acromegarly - Patients With Abnormal IGF-1 Test and Acromegarly ICD9 Code
-IGF-1 Result, Has 253 ICD9 Code	IGF-1 Result, Abnormal = 0 AND IGF-1 Result, Has 253 ICD9 Code = 0	Profile - Acromegarly - Patients With Not Abnormal IGF-1 Test and Other ICD9 Code
-IGF-1 Result, Abnormal	IGF-1 Result, Abnormal = 1 AND IGF-1 Result, Has 253 ICD9 Code = 0	Profile - Acromegarly - Patients With Abnormal IGF-1 Test and Other ICD9 Code
-IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Hist	IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Hist = 1 AND IGF-1 Result, Abnormal = 0	Profile - Acromegarly - Patients With Not Abnormal IGF-1 Test and Pituitary Gland Neoplasm ICD9 Code
-IGF-1 Result, Age Group	CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Male = 1 AND test_result_num >157) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Male = 1 AND test_result_num >167) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Male = 1 AND test_result_num >184) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Male = 1 AND test_result_num >225) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Male = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Male = 1 AND test_result_num >292) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Male = 1 AND test_result_num >323) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Male = 1 AND test_result_num >362) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Male = 1 AND test_result_num >407) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Male = 1 AND test_result_num >454) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Male = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Male = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Male = 1 AND test_result_num >551) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Male = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Male = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Male = 1 AND test_result_num >521) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Male = 1 AND test_result_num >494) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Male = 1 AND test_result_num >463) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Male = 1 AND test_result_num >430) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Male = 1 AND test_result_num >355) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Male = 1 AND test_result_num >282) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Male = 1 AND test_result_num >233) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Male = 1 AND test_result_num >216) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Male = 1 AND test_result_num >200) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Male = 1 AND test_result_num >194) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Male = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Male = 1 AND test_result_num >192) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Male = 1 AND test_result_num >179) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Male = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Male = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 ELSE 0 END	IGF-1 Result, Abn High, Male
-Has Diag	equals	Profile - Acromegarly - Diagnosed Patients
-IGF-1 Result, Male	CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Male = 1 AND test_result_num >157) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Male = 1 AND test_result_num >167) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Male = 1 AND test_result_num >184) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Male = 1 AND test_result_num >225) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Male = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Male = 1 AND test_result_num >292) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Male = 1 AND test_result_num >323) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Male = 1 AND test_result_num >362) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Male = 1 AND test_result_num >407) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Male = 1 AND test_result_num >454) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Male = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Male = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Male = 1 AND test_result_num >551) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Male = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Male = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Male = 1 AND test_result_num >521) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Male = 1 AND test_result_num >494) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Male = 1 AND test_result_num >463) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Male = 1 AND test_result_num >430) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Male = 1 AND test_result_num >355) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Male = 1 AND test_result_num >282) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Male = 1 AND test_result_num >233) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Male = 1 AND test_result_num >216) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Male = 1 AND test_result_num >200) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Male = 1 AND test_result_num >194) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Male = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Male = 1 AND test_result_num >192) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Male = 1 AND test_result_num >179) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Male = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Male = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 ELSE 0 END	IGF-1 Result, Abn High, Male
-IGF-1 Result, Abnormal	IGF-1 Result, Abnormal = 0 AND IGF-1 Result, Has 253 ICD9 Code = 0	Profile - Acromegarly - Patients With Not Abnormal IGF-1 Test and Other ICD9 Code
-IGF-1 Result	IGF-1 Result = 1 AND patient_gender = 'M'	IGF-1 Result, Male
-IGF-1 Result	CASE WHEN IGF-1 Result = 1 AND patient_age < 20 THEN patient_age WHEN IGF-1 Result = 1 AND patient_age BETWEEN 21 AND 25 THEN 21 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 26 AND 30 THEN 26 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 31 AND 35 THEN 31 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 36 AND 40 THEN 36 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 41 AND 45 THEN 41 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 46 AND 50 THEN 46 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 51 AND 55 THEN 51 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 56 AND 60 THEN 56 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 61 AND 65 THEN 61 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 66 AND 70 THEN 66 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 71 AND 75 THEN 71 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 76 AND 80 THEN 76 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 81 AND 85 THEN 81 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 86 AND 90 THEN 86 WHEN IGF-1 Result = 1 AND patient_age > 90 THEN 91 END	IGF-1 Result, Age Group
-IGF-1 Result, Age Group	CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Female = 1 AND test_result_num >126) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Female = 1 AND test_result_num >132) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Female = 1 AND test_result_num >145) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Female = 1 AND test_result_num >164) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Female = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Female = 1 AND test_result_num >214) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Female = 1 AND test_result_num >240) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Female = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Female = 1 AND test_result_num >305) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Female = 1 AND test_result_num >349) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Female = 1 AND test_result_num >400) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Female = 1 AND test_result_num >453) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Female = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Female = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Female = 1 AND test_result_num >552) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Female = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Female = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Female = 1 AND test_result_num >517) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Female = 1 AND test_result_num >486) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Female = 1 AND test_result_num >451) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Female = 1 AND test_result_num >416) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Female = 1 AND test_result_num >342) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Female = 1 AND test_result_num >270) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Female = 1 AND test_result_num >243) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Female = 1 AND test_result_num >227) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Female = 1 AND test_result_num >204) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Female = 1 AND test_result_num >195) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Female = 1 AND test_result_num >190) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Female = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Female = 1 AND test_result_num >169) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Female = 1 AND test_result_num >163) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Female = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Female = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Female = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Female = 1 AND test_result_num >178) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Female = 1 AND test_result_num >178) THEN 1 ELSE 0 END	IGF-1 Result, Abn High, Female
-IGF-1 Result, Male	CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Female = 1 AND test_result_num >126) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Female = 1 AND test_result_num >132) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Female = 1 AND test_result_num >145) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Female = 1 AND test_result_num >164) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Female = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Female = 1 AND test_result_num >214) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Female = 1 AND test_result_num >240) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Female = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Female = 1 AND test_result_num >305) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Female = 1 AND test_result_num >349) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Female = 1 AND test_result_num >400) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Female = 1 AND test_result_num >453) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Female = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Female = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Female = 1 AND test_result_num >552) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Female = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Female = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Female = 1 AND test_result_num >517) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Female = 1 AND test_result_num >486) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Female = 1 AND test_result_num >451) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Female = 1 AND test_result_num >416) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Female = 1 AND test_result_num >342) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Female = 1 AND test_result_num >270) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Female = 1 AND test_result_num >243) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Female = 1 AND test_result_num >227) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Female = 1 AND test_result_num >204) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Female = 1 AND test_result_num >195) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Female = 1 AND test_result_num >190) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Female = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Female = 1 AND test_result_num >169) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Female = 1 AND test_result_num >163) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Female = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Female = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Female = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Female = 1 AND test_result_num >178) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Female = 1 AND test_result_num >178) THEN 1 ELSE 0 END	IGF-1 Result, Abn High, Female
-IGF-1 Result, Has 253 ICD9 Code	IGF-1 Result, Abnormal = 1 AND IGF-1 Result, Has 253 ICD9 Code = 0	Profile - Acromegarly - Patients With Abnormal IGF-1 Test and Other ICD9 Code
-IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Prior	(IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code = 1) OR (IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Prior = 1)	IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Hist
-IGF-1 Result, Age Group	CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Male = 1 AND test_result_num >157) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Male = 1 AND test_result_num >167) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Male = 1 AND test_result_num >184) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Male = 1 AND test_result_num >225) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Male = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Male = 1 AND test_result_num >292) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Male = 1 AND test_result_num >323) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Male = 1 AND test_result_num >362) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Male = 1 AND test_result_num >407) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Male = 1 AND test_result_num >454) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Male = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Male = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Male = 1 AND test_result_num >551) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Male = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Male = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Male = 1 AND test_result_num >521) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Male = 1 AND test_result_num >494) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Male = 1 AND test_result_num >463) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Male = 1 AND test_result_num >430) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Male = 1 AND test_result_num >355) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Male = 1 AND test_result_num >282) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Male = 1 AND test_result_num >233) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Male = 1 AND test_result_num >216) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Male = 1 AND test_result_num >200) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Male = 1 AND test_result_num >194) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Male = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Male = 1 AND test_result_num >192) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Male = 1 AND test_result_num >179) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Male = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Male = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 ELSE 0 END	IGF-1 Result, Abn High, Male
-IGF-1 Result	case when IGF-1 Result = 1 AND '227.3' in (icd9_primary,icd9_secondary,icd9_third,icd9_fourth) then 1 else 0 end	IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code
-IGF-1 Result, Female	CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Female = 1 AND test_result_num >126) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Female = 1 AND test_result_num >132) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Female = 1 AND test_result_num >145) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Female = 1 AND test_result_num >164) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Female = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Female = 1 AND test_result_num >214) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Female = 1 AND test_result_num >240) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Female = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Female = 1 AND test_result_num >305) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Female = 1 AND test_result_num >349) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Female = 1 AND test_result_num >400) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Female = 1 AND test_result_num >453) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Female = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Female = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Female = 1 AND test_result_num >552) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Female = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Female = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Female = 1 AND test_result_num >517) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Female = 1 AND test_result_num >486) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Female = 1 AND test_result_num >451) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Female = 1 AND test_result_num >416) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Female = 1 AND test_result_num >342) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Female = 1 AND test_result_num >270) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Female = 1 AND test_result_num >243) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Female = 1 AND test_result_num >227) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Female = 1 AND test_result_num >204) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Female = 1 AND test_result_num >195) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Female = 1 AND test_result_num >190) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Female = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Female = 1 AND test_result_num >169) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Female = 1 AND test_result_num >163) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Female = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Female = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Female = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Female = 1 AND test_result_num >178) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Female = 1 AND test_result_num >178) THEN 1 ELSE 0 END	IGF-1 Result, Abn High, Female
-IGF-1 Result, Abn High, Male	IGF-1 Result, Abn High, Male = 1 OR IGF-1 Result, Abn High, Female = 1	IGF-1 Result, Abnormal
-IGF-1 Result, Has 253 ICD9 Code	IGF-1 Result, Has 253 ICD9 Code = 1 OR IGF-1 Result, Abnormal = 1	Has Diag
-IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code	prior history of	IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Prior
-IGF-1 Result, Female	CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Male = 1 AND test_result_num >157) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Male = 1 AND test_result_num >167) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Male = 1 AND test_result_num >184) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Male = 1 AND test_result_num >225) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Male = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Male = 1 AND test_result_num >292) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Male = 1 AND test_result_num >323) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Male = 1 AND test_result_num >362) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Male = 1 AND test_result_num >407) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Male = 1 AND test_result_num >454) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Male = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Male = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Male = 1 AND test_result_num >551) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Male = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Male = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Male = 1 AND test_result_num >521) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Male = 1 AND test_result_num >494) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Male = 1 AND test_result_num >463) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Male = 1 AND test_result_num >430) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Male = 1 AND test_result_num >355) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Male = 1 AND test_result_num >282) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Male = 1 AND test_result_num >233) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Male = 1 AND test_result_num >216) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Male = 1 AND test_result_num >200) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Male = 1 AND test_result_num >194) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Male = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Male = 1 AND test_result_num >192) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Male = 1 AND test_result_num >179) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Male = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Male = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 ELSE 0 END	IGF-1 Result, Abn High, Male
-IGF-1 Result, Abn High, Female	IGF-1 Result, Abn High, Male = 1 OR IGF-1 Result, Abn High, Female = 1	IGF-1 Result, Abnormal
-IGF-1 Result, Abnormal	IGF-1 Result, Abnormal = 1 AND IGF-1 Result, Has 253 ICD9 Code = 1	Profile - Acromegarly - Patients With Abnormal IGF-1 Test and Acromegarly ICD9 Code
-IGF-1 Result	IGF-1 Result = 1 AND patient_gender = 'F'	IGF-1 Result, Female
-IGF-1 Result, Male	CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Male = 1 AND test_result_num >157) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Male = 1 AND test_result_num >167) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Male = 1 AND test_result_num >184) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Male = 1 AND test_result_num >225) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Male = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Male = 1 AND test_result_num >292) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Male = 1 AND test_result_num >323) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Male = 1 AND test_result_num >362) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Male = 1 AND test_result_num >407) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Male = 1 AND test_result_num >454) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Male = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Male = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Male = 1 AND test_result_num >551) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Male = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Male = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Male = 1 AND test_result_num >521) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Male = 1 AND test_result_num >494) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Male = 1 AND test_result_num >463) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Male = 1 AND test_result_num >430) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Male = 1 AND test_result_num >355) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Male = 1 AND test_result_num >282) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Male = 1 AND test_result_num >233) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Male = 1 AND test_result_num >216) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Male = 1 AND test_result_num >200) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Male = 1 AND test_result_num >194) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Male = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Male = 1 AND test_result_num >192) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Male = 1 AND test_result_num >179) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Male = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Male = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 ELSE 0 END	IGF-1 Result, Abn High, Male
-IGF-1 Result, Abnormal	IGF-1 Result, Has 253 ICD9 Code = 1 OR IGF-1 Result, Abnormal = 1	Has Diag
-IGF-1 Result	case when IGF-1 Result = 1 AND '253.0' in (icd9_primary,icd9_secondary,icd9_third,icd9_fourth) then 1 else 0 end	IGF-1 Result, Has 253 ICD9 Code
-IGF-1 Result, Has 253 ICD9 Code	IGF-1 Result, Abnormal = 0 AND IGF-1 Result, Has 253 ICD9 Code = 1	Profile - Acromegarly - Patients With Not Abnormal IGF-1 Test and Acromegarly ICD9 Code
-IGF-1 Result, Abnormal	IGF-1 Result, Abnormal = 0 AND IGF-1 Result, Has 253 ICD9 Code = 1	Profile - Acromegarly - Patients With Not Abnormal IGF-1 Test and Acromegarly ICD9 Code
-IGF-1 Result, Abnormal	IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Hist = 1 AND IGF-1 Result, Abnormal = 0	Profile - Acromegarly - Patients With Not Abnormal IGF-1 Test and Pituitary Gland Neoplasm ICD9 Code

data/example/cmap_to_sql.rb

@@ -1,91 +0,0 @@
-require '/Users/malarcon/medivo/cmap/lib/cmap.rb'
-require 'pry'
-
-class PpdmVelmaCode
-  attr_reader :propositions_to_sql,:condition
-
-  def initialize(propositions_to_sql,condition)
-    @propositions_to_sql = propositions_to_sql
-    @condition = condition
-  end
-
-  def save_to_file(filename,what_to_save)
-    output = File.open( "#{filename}","w" )
-    output << what_to_save
-    output.close
-  end
-
-	def extract_create_sql
-    "create table extracts.#{condition} (\n  lab_result_id integer,\n  input_filename varchar(255),\n  patient_id varchar(255),\n  patient_gender varchar(255),\n  patient_date_of_birth varchar(255),\n  patient_state varchar(255),\n  diagnosis_codes varchar(255),\n  test_result_name varchar(255),\n  test_result_value varchar(255),\n  test_result_abnormal_flag varchar(255),\n  ordering_provider_npi_number varchar(255),\n  ordering_provider_first_name varchar(255),\n  ordering_provider_last_name varchar(255),\n  ordering_practice_lab_account_number varchar(255),\n  ordering_practice_address_line_1 varchar(255),\n  ordering_practice_zip_code varchar(255),\n\n  test_result_name_stnd varchar(128),\n  test_result_value_numeric_stnd numeric(23,5),\n  test_observation_reported_date varchar(255),\n  test_specimen_draw_date varchar(255),\n  test_specimen_receipt_date varchar(255),\n  diag_1 varchar(16),\n  diag_2 varchar(16),\n  diag_3 varchar(16),\n  diag_4 varchar(16),\n  account_type varchar(255),\n  provider_type varchar(255)\n);"
-	end
-
-	def extract_select_sql
-		extract_select = "select\n  -- lochlomond fields\n  lab_result_id,\n  input_filename,\n  token4 as patient_id,\n  patient_gender,\n  patient_date_of_birth,\n  patient_state,\n  diagnosis_codes,\n  test_result_name,\n  test_result_value,\n  test_result_abnormal_flag,\n  ordering_provider_npi_number,\n  ordering_provider_first_name,\n  ordering_provider_last_name,\n  ordering_practice_lab_account_number,\n  ordering_practice_address_line_1,\n  ordering_practice_zip_code,\n\n  -- standardized fields\n  test_result_name_stnd,\n  test_result_value_numeric_stnd,\n  test_observation_reported_date,\n  test_specimen_draw_date,\n  test_specimen_receipt_date,\n  diag_1,\n  diag_2,\n  diag_3,\n  diag_4,\n  account_type,\n  provider_type\nfrom\n  analytics.lab_result\nwhere"
-		results_of_interest = propositions_to_sql.sanitized_graph.children(propositions_to_sql.table_name)
-    vertices_of_results = propositions_to_sql.sanitized_graph.edges.select{|e| results_of_interest.include? e.destination_vertex}
-    fields = vertices_of_results.map {|e| "#{e.value}" }.join(" or ")
-    "#{extract_select} #{fields};"
-	end
-
-  def transform_sql
-    transform_header = "set search_path to datamarts;\nDROP TABLE IF EXISTS ai_ppdm_acr;\n\nCREATE TABLE ai_ppdm_acr\n\nAS\n\nSELECT  ROW_NUMBER() OVER (ORDER BY patient_id,test_observation_reported_date,lab_result_id) AS record_number,\nDENSE_RANK() OVER (PARTITION BY patient_id ORDER BY test_observation_reported_date ASC,test_result_name_stnd,lab_result_id) AS record_number_asc,\nDENSE_RANK() OVER (PARTITION BY patient_id ORDER BY test_observation_reported_date DESC,test_result_name_stnd,lab_result_id) AS record_number_desc,\nlab_result_id,\ninput_filename,\npatient_id,\nmd5(test_observation_reported_date||patient_id) patient_date_id,\npatient_gender,\npatient_date_of_birth as patient_birth_year,\nCASE WHEN left(test_observation_reported_date,4) = '' then null\nELSE left(test_observation_reported_date,4)::numeric - patient_date_of_birth::numeric END as patient_age,\npatient_state,\ntest_result_name_stnd,\ntest_result_name,\nCASE WHEN test_result_value_numeric_stnd is null and test_result_value like '%<%' or test_result_value like '%>%' then replace(case WHEN test_result_value ~* '< ?[0-9]+ ?not detected' then '0' ELSE regexp_substr(test_result_value,'[0-9]+(\.[0-9]+)? ?') end,',','') *1.00\n  WHEN test_result_value_numeric_stnd is null and test_result_value like '%E6' then replace(test_result_value,'E6','')*1000000.00\n  WHEN test_result_value_numeric_stnd is null and test_result_value like '%E5' then replace(test_result_value,'E5','')*100000.00\n  WHEN test_result_value_numeric_stnd is null and test_result_value like '%E4' then replace(test_result_value,'E4','')*10000.00\n  WHEN test_result_value_numeric_stnd is null and test_result_value ~* 'not detected' then 0.00\n  WHEN test_result_value_numeric_stnd is null and test_result_value ~* 'detected' then 1.00\nELSE test_result_value_numeric_stnd end test_result_num,\ntest_result_value,\ntest_result_abnormal_flag as test_abnorm_flag,\nTO_DATE(CASE WHEN test_observation_reported_date = '' THEN test_specimen_receipt_date ELSE test_observation_reported_date END,'YYYYMMDD') test_observation_reported_date_dt,\nLEFT (CASE WHEN test_observation_reported_date = '' THEN test_specimen_receipt_date ELSE test_observation_reported_date END,6)*1 test_observation_reported_date_yyyymm,\nTO_DATE(test_specimen_draw_date,'YYYYMMDD') test_specimen_draw_date_dt,\nmd5(coalesce(ordering_provider_npi_number,'')|| coalesce(ordering_provider_first_name,'')||coalesce(ordering_provider_last_name,'')) provider_id,\nordering_practice_lab_account_number practice_id,\nCASE\n  WHEN lower(account_type) IN ('other','jail','military','n/a',' ','deleted account') THEN 'Non-Reference'\n  WHEN account_type is null THEN 'Non-Reference'\n  WHEN lower(account_type) IN ('lab') THEN 'Reference'\n  WHEN lower(account_type) IN ('foreign') THEN 'Non-USA'\n  ELSE 'UNMAPPED' ||account_type\n   END account_type_val,\nprovider_type,\ndiag_1 as icd9_primary,\ndiag_2 as icd9_secondary,\ndiag_3 as icd9_third,\ndiag_4 as icd9_fourth,\nordering_practice_address_line_1 IS NOT NULL has_practice_info,\n((ordering_provider_first_name IS NOT NULL AND ordering_provider_last_name IS NOT NULL) OR ordering_provider_npi_number IS NOT NULL) has_provider_info,\nordering_provider_npi_number <> '' has_npi,\nordering_practice_zip_code\nFROM extracts.#{condition};\n\n"
-    transform_body = propositions_to_sql.queries.join("\n")
-    "#{transform_header}\n#{transform_body}\n;"
-  end
-
-  def transform_qa_sql
-    transform_qa_header = "set search_path to datamarts; \nselect "
-    fields_to_sum= propositions_to_sql.sanitized_graph.vertices.select {|v| v != propositions_to_sql.table_name}
-    transform_body = fields_to_sum.map {|e| "sum(#{e}) #{e}" }.join("\n, ")
-    transform_body_from ="from #{propositions_to_sql.table_name}"
-    "#{transform_qa_header}\n#{transform_body}\n#{transform_body_from};"
-  end
-
-end
-
-
-if ARGV.empty?
-  puts "USAGE: #{$0} <CONDITION>"
-  exit
-end
-
-condition = ARGV[0]
-
-
-propositions_path = File.expand_path("./"+condition+".txt", File.dirname(__FILE__))
-
-subquery_gsubs = [
-  ["prior history of", "update +table_name+ set +destination_vertex+=(SELECT count(*)  FROM +table_name+ n1 WHERE n1.patient_id = +table_name+.patient_id AND n1.test_specimen_draw_date_dt <+table_name+.test_specimen_draw_date_dt AND +origin_vertex+=1)>0;"],
-  ["equals", "update +table_name+ set +destination_vertex+= +origin_vertex+;"],
-  ["order has","update +table_name+ set +destination_vertex+=(SELECT max(+origin_vertex+)  FROM +table_name+ n1 WHERE n1.patient_id = +table_name+.patient_id AND n1.order_id = +table_name+.order_id );"]
-]
-
-root_name = "ai_ppdm_"+condition
-args = {
-  propositions_path: propositions_path,
-  table_name: root_name,
-  subquery_gsubs: subquery_gsubs
-}
-
-propositions_to_sql = Cmap::PropositionsToSql.new(args)
-
-ppdm_extract_code = PpdmVelmaCode.new(propositions_to_sql,condition)
-
-puts "\n################################\nSQL - EXTRACT CREATE - #{root_name} - create.sql\n################################\n"
-#puts ppdm_extract_code.extract_create_sql
-ppdm_extract_code.save_to_file("create.sql",ppdm_extract_code.extract_create_sql)
-
-puts "\n################################\nSQL - EXTRACT SELECT - #{root_name} - select.sql\n################################\n"
-#puts ppdm_extract_code.extract_select_sql
-ppdm_extract_code.save_to_file("select.sql",ppdm_extract_code.extract_select_sql)
-
-
-puts "\n################################\nSQL - TRANSFORM - #{root_name} - #{root_name}.sql\n################################\n"
-ppdm_extract_code.save_to_file("#{root_name}.sql",ppdm_extract_code.transform_sql)
-#puts ppdm_extract_code.transform_sql
-
-puts "\n################################\nSQL - TRANSFORM QA - #{root_name} - #{root_name}_qa.sql\n################################\n"
-ppdm_extract_code.save_to_file("#{root_name}_qa.sql",ppdm_extract_code.transform_qa_sql)
-#puts ppdm_extract_code.transform_qa_sql
-
-#binding.pry

data/lib/cmap/edges_to_queries.rb

@@ -1,46 +0,0 @@
-module Cmap; class EdgesToQueries
-
-  attr_reader :edges, :table_name, :schema_name, :subquery_expander
-
-  def initialize(edges, table_name, schema_name, subquery_expander)
-    @edges = edges
-    @table_name = table_name
-    @schema_name = schema_name
-    @subquery_expander = subquery_expander
-  end
-
-  def queries
-    add_columns_queries +
-    gsub_subqueries +
-    updates
-    .delete_if {|q| q.empty?}
-  end
-
-  private
-
-  def unique_edges
-    edges.uniq {|e| [e.destination_vertex.data[:sanitized_name], e.data[:sanitized_value]]}
-  end
-
-  def add_columns_queries
-    unique_edges.map {|e| "alter table #{schema_name}.#{table_name} add column #{e.destination_vertex.data[:sanitized_name]} int2;"}
-  end
-
-  def grouped_edges
-    unique_edges.group_by {|e| subquery_expander.update_query?(e)}
-  end
-
-  def gsub_subqueries
-    (grouped_edges[true] || []).map {|e| subquery_expander.query(e)}
-  end
-
-  def updates
-    u = (grouped_edges[false] || []).map do |e|
-      "#{e.destination_vertex.data[:sanitized_name]}=(#{e.data[:sanitized_value]})::int"
-    end.join(", ")
-    return [] if u.empty?
-    ["update #{schema_name}.#{table_name} set #{u};"]
-  end
-
-end; end
-

data/lib/cmap/graph_to_sql.rb

@@ -1,34 +0,0 @@
-module Cmap; class GraphToSql
-
-  attr_reader :table_name, :schema_name, :graph, :subquery_gsubs
-
-  def initialize(table_name, schema_name, graph, subquery_gsubs = [])
-    @table_name = table_name
-    @schema_name = schema_name
-    @graph = graph
-    @subquery_gsubs = subquery_gsubs
-  end
-
-  def queries
-    sorted_grouped_edges.inject([]) do |memo, (_, edges)|
-      memo += (EdgesToQueries.new(edges, table_name, schema_name, subquery_expander).queries)
-      memo
-    end
-  end
-
-  private
-
-  def subquery_expander
-    SubqueryExpander.new(table_name: table_name, schema_name: schema_name, subquery_gsubs: subquery_gsubs)
-  end
-
-  def sorted_grouped_edges
-    Hash[grouped_edges.sort]
-  end
-
-  def grouped_edges
-    graph.edges.group_by {|e| graph.longest_path(table_name, e.destination_vertex).length}
-  end
-
-end; end
-

data/lib/cmap/propositions_to_sql.rb

@@ -1,29 +0,0 @@
-module Cmap; class PropositionsToSql
-
-  attr_reader :propositions_path, :table_name, :schema_name, :subquery_gsubs
-
-  def initialize(args)
-    @propositions_path = args.fetch(:propositions_path)
-    @table_name = args.fetch(:table_name)
-    @schema_name = args.fetch(:schema_name)
-    @subquery_gsubs = args.fetch(:subquery_gsubs, [])
-  end
-
-  def queries
-    graph_to_sql.queries
-  end
-
-  def propositions_to_graph
-    PropositionsToGraph.new(propositions_path)
-  end
-
-  def raw_graph
-    propositions_to_graph.graph
-  end
-
-  def graph_to_sql
-    GraphToSql.new(table_name, schema_name, raw_graph, subquery_gsubs)
-  end
-
-end; end
-

data/lib/cmap/sql_runner.rb

@@ -1,21 +0,0 @@
-module Cmap; class SqlRunner
-
-  attr_reader :db_config
-
-  def initialize(db_config)
-    @db_config = db_config
-  end
-
-  def run_queries(queries)
-    queries.each do |q|
-      connection.exec(q)
-    end
-  end
-
-  def connection
-    @connection ||= PGconn.connect(db_config)
-  end
-
-end; end
-
-

data/lib/cmap/subquery_expander.rb

@@ -1,28 +0,0 @@
-module Cmap; class SubqueryExpander
-
-  attr_reader :table_name, :schema_name, :subquery_gsubs
-
-  def initialize(args)
-    @table_name = args.fetch(:table_name)
-    @schema_name = args.fetch(:schema_name)
-    @subquery_gsubs = args.fetch(:subquery_gsubs, [])
-  end
-
-  def update_query?(edge)
-    edge.data[:sanitized_value] != query(edge)
-  end
-
-  def query(edge)
-    r = edge.data[:sanitized_value]
-    replacements = [
-      ["+table_name+", table_name],
-      ["+schema_name+", schema_name],
-      ["+destination_vertex+", edge.destination_vertex.data[:sanitized_name]],
-      ["+origin_vertex+", edge.origin_vertex.data[:sanitized_name]]
-    ]
-    (subquery_gsubs + replacements).each {|gsub| r = r.gsub(*gsub)}
-    r
-  end
-
-end; end
-