cmap 0.6.0 → 0.7.0
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- checksums.yaml +4 -4
- data/lib/cmap/version.rb +1 -1
- data/lib/cmap.rb +0 -5
- metadata +2 -9
- data/example/acr.txt +0 -32
- data/example/cmap_to_sql.rb +0 -91
- data/lib/cmap/edges_to_queries.rb +0 -46
- data/lib/cmap/graph_to_sql.rb +0 -34
- data/lib/cmap/propositions_to_sql.rb +0 -29
- data/lib/cmap/sql_runner.rb +0 -21
- data/lib/cmap/subquery_expander.rb +0 -28
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 2cd68b6863858c4d68effbc84b084161cd12bdeb
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4
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+
data.tar.gz: 40ec3cc6dab22ea9170c877f91b9e9bad364c7e8
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 103bce6a0d09e74f5fdca7bf58831a8c0084d8dc2b806e58e800acdd15a20366f0bec3fc484b3c035508a0a59996c201ff6d0bbfe7eab40289b224bcac3862e0
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7
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+
data.tar.gz: 30197713ba45f8b8d9be5e867205e589992c412ca9f96ecfdfe9bbbe52b65b94ace8aa438a42e2b3670e61e36f7ed78962103b5d8aed9093d8a8e0be019abafb
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data/lib/cmap/version.rb
CHANGED
data/lib/cmap.rb
CHANGED
@@ -7,12 +7,7 @@ require 'pry'
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7
7
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require 'directed_graph'
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8
8
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require_relative "./cmap/sanitize_graph.rb"
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10
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-
require_relative "./cmap/subquery_expander.rb"
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11
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-
require_relative "./cmap/edges_to_queries.rb"
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10
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require_relative "./cmap/propositions_to_graph.rb"
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13
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require_relative "./cmap/graph_to_sql.rb"
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require_relative "./cmap/propositions_to_sql.rb"
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require_relative "./cmap/sql_runner.rb"
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11
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12
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module Cmap
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end
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metadata
CHANGED
@@ -1,14 +1,14 @@
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1
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--- !ruby/object:Gem::Specification
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name: cmap
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3
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version: !ruby/object:Gem::Version
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-
version: 0.
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4
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+
version: 0.7.0
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platform: ruby
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6
6
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authors:
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- MrPowers
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autorequire:
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9
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bindir: exe
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10
10
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cert_chain: []
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11
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-
date: 2016-01-
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11
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+
date: 2016-01-07 00:00:00.000000000 Z
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12
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dependencies:
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- !ruby/object:Gem::Dependency
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14
14
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name: bundler
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@@ -112,16 +112,9 @@ files:
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112
112
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- bin/console
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113
113
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- bin/setup
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114
114
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- cmap.gemspec
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115
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-
- example/acr.txt
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116
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-
- example/cmap_to_sql.rb
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117
115
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- lib/cmap.rb
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118
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-
- lib/cmap/edges_to_queries.rb
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119
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-
- lib/cmap/graph_to_sql.rb
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120
116
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- lib/cmap/propositions_to_graph.rb
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121
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-
- lib/cmap/propositions_to_sql.rb
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122
117
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- lib/cmap/sanitize_graph.rb
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123
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-
- lib/cmap/sql_runner.rb
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124
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-
- lib/cmap/subquery_expander.rb
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125
118
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- lib/cmap/version.rb
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126
119
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- pictures/.DS_Store
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127
120
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- pictures/cmap_example.png
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data/example/acr.txt
DELETED
@@ -1,32 +0,0 @@
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1
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-
IGF-1 Result, Female CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Male = 1 AND test_result_num >157) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Male = 1 AND test_result_num >167) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Male = 1 AND test_result_num >184) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Male = 1 AND test_result_num >225) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Male = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Male = 1 AND test_result_num >292) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Male = 1 AND test_result_num >323) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Male = 1 AND test_result_num >362) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Male = 1 AND test_result_num >407) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Male = 1 AND test_result_num >454) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Male = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Male = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Male = 1 AND test_result_num >551) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Male = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Male = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Male = 1 AND test_result_num >521) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Male = 1 AND test_result_num >494) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Male = 1 AND test_result_num >463) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Male = 1 AND test_result_num >430) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Male = 1 AND test_result_num >355) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Male = 1 AND test_result_num >282) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Male = 1 AND test_result_num >233) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Male = 1 AND test_result_num >216) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Male = 1 AND test_result_num >200) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Male = 1 AND test_result_num >194) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Male = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Male = 1 AND test_result_num >192) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Male = 1 AND test_result_num >179) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Male = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Male = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Male
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ai_ppdm_acr test_result_name_stnd = 'IGF-I' IGF-1 Result
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IGF-1 Result, Has 253 ICD9 Code IGF-1 Result, Abnormal = 1 AND IGF-1 Result, Has 253 ICD9 Code = 1 Profile - Acromegarly - Patients With Abnormal IGF-1 Test and Acromegarly ICD9 Code
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IGF-1 Result, Has 253 ICD9 Code IGF-1 Result, Abnormal = 0 AND IGF-1 Result, Has 253 ICD9 Code = 0 Profile - Acromegarly - Patients With Not Abnormal IGF-1 Test and Other ICD9 Code
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IGF-1 Result, Abnormal IGF-1 Result, Abnormal = 1 AND IGF-1 Result, Has 253 ICD9 Code = 0 Profile - Acromegarly - Patients With Abnormal IGF-1 Test and Other ICD9 Code
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IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Hist IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Hist = 1 AND IGF-1 Result, Abnormal = 0 Profile - Acromegarly - Patients With Not Abnormal IGF-1 Test and Pituitary Gland Neoplasm ICD9 Code
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IGF-1 Result, Age Group CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Male = 1 AND test_result_num >157) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Male = 1 AND test_result_num >167) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Male = 1 AND test_result_num >184) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Male = 1 AND test_result_num >225) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Male = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Male = 1 AND test_result_num >292) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Male = 1 AND test_result_num >323) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Male = 1 AND test_result_num >362) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Male = 1 AND test_result_num >407) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Male = 1 AND test_result_num >454) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Male = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Male = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Male = 1 AND test_result_num >551) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Male = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Male = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Male = 1 AND test_result_num >521) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Male = 1 AND test_result_num >494) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Male = 1 AND test_result_num >463) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Male = 1 AND test_result_num >430) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Male = 1 AND test_result_num >355) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Male = 1 AND test_result_num >282) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Male = 1 AND test_result_num >233) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Male = 1 AND test_result_num >216) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Male = 1 AND test_result_num >200) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Male = 1 AND test_result_num >194) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Male = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Male = 1 AND test_result_num >192) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Male = 1 AND test_result_num >179) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Male = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Male = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Male
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Has Diag equals Profile - Acromegarly - Diagnosed Patients
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IGF-1 Result, Male CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Male = 1 AND test_result_num >157) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Male = 1 AND test_result_num >167) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Male = 1 AND test_result_num >184) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Male = 1 AND test_result_num >225) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Male = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Male = 1 AND test_result_num >292) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Male = 1 AND test_result_num >323) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Male = 1 AND test_result_num >362) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Male = 1 AND test_result_num >407) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Male = 1 AND test_result_num >454) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Male = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Male = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Male = 1 AND test_result_num >551) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Male = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Male = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Male = 1 AND test_result_num >521) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Male = 1 AND test_result_num >494) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Male = 1 AND test_result_num >463) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Male = 1 AND test_result_num >430) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Male = 1 AND test_result_num >355) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Male = 1 AND test_result_num >282) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Male = 1 AND test_result_num >233) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Male = 1 AND test_result_num >216) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Male = 1 AND test_result_num >200) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Male = 1 AND test_result_num >194) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Male = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Male = 1 AND test_result_num >192) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Male = 1 AND test_result_num >179) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Male = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Male = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Male
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IGF-1 Result, Abnormal IGF-1 Result, Abnormal = 0 AND IGF-1 Result, Has 253 ICD9 Code = 0 Profile - Acromegarly - Patients With Not Abnormal IGF-1 Test and Other ICD9 Code
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IGF-1 Result IGF-1 Result = 1 AND patient_gender = 'M' IGF-1 Result, Male
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IGF-1 Result CASE WHEN IGF-1 Result = 1 AND patient_age < 20 THEN patient_age WHEN IGF-1 Result = 1 AND patient_age BETWEEN 21 AND 25 THEN 21 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 26 AND 30 THEN 26 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 31 AND 35 THEN 31 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 36 AND 40 THEN 36 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 41 AND 45 THEN 41 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 46 AND 50 THEN 46 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 51 AND 55 THEN 51 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 56 AND 60 THEN 56 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 61 AND 65 THEN 61 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 66 AND 70 THEN 66 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 71 AND 75 THEN 71 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 76 AND 80 THEN 76 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 81 AND 85 THEN 81 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 86 AND 90 THEN 86 WHEN IGF-1 Result = 1 AND patient_age > 90 THEN 91 END IGF-1 Result, Age Group
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IGF-1 Result, Age Group CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Female = 1 AND test_result_num >126) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Female = 1 AND test_result_num >132) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Female = 1 AND test_result_num >145) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Female = 1 AND test_result_num >164) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Female = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Female = 1 AND test_result_num >214) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Female = 1 AND test_result_num >240) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Female = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Female = 1 AND test_result_num >305) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Female = 1 AND test_result_num >349) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Female = 1 AND test_result_num >400) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Female = 1 AND test_result_num >453) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Female = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Female = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Female = 1 AND test_result_num >552) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Female = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Female = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Female = 1 AND test_result_num >517) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Female = 1 AND test_result_num >486) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Female = 1 AND test_result_num >451) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Female = 1 AND test_result_num >416) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Female = 1 AND test_result_num >342) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Female = 1 AND test_result_num >270) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Female = 1 AND test_result_num >243) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Female = 1 AND test_result_num >227) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Female = 1 AND test_result_num >204) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Female = 1 AND test_result_num >195) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Female = 1 AND test_result_num >190) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Female = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Female = 1 AND test_result_num >169) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Female = 1 AND test_result_num >163) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Female = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Female = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Female = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Female = 1 AND test_result_num >178) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Female = 1 AND test_result_num >178) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Female
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IGF-1 Result, Male CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Female = 1 AND test_result_num >126) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Female = 1 AND test_result_num >132) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Female = 1 AND test_result_num >145) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Female = 1 AND test_result_num >164) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Female = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Female = 1 AND test_result_num >214) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Female = 1 AND test_result_num >240) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Female = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Female = 1 AND test_result_num >305) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Female = 1 AND test_result_num >349) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Female = 1 AND test_result_num >400) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Female = 1 AND test_result_num >453) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Female = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Female = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Female = 1 AND test_result_num >552) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Female = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Female = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Female = 1 AND test_result_num >517) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Female = 1 AND test_result_num >486) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Female = 1 AND test_result_num >451) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Female = 1 AND test_result_num >416) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Female = 1 AND test_result_num >342) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Female = 1 AND test_result_num >270) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Female = 1 AND test_result_num >243) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Female = 1 AND test_result_num >227) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Female = 1 AND test_result_num >204) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Female = 1 AND test_result_num >195) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Female = 1 AND test_result_num >190) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Female = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Female = 1 AND test_result_num >169) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Female = 1 AND test_result_num >163) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Female = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Female = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Female = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Female = 1 AND test_result_num >178) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Female = 1 AND test_result_num >178) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Female
|
15
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IGF-1 Result, Has 253 ICD9 Code IGF-1 Result, Abnormal = 1 AND IGF-1 Result, Has 253 ICD9 Code = 0 Profile - Acromegarly - Patients With Abnormal IGF-1 Test and Other ICD9 Code
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16
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IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Prior (IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code = 1) OR (IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Prior = 1) IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Hist
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17
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IGF-1 Result, Age Group CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Male = 1 AND test_result_num >157) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Male = 1 AND test_result_num >167) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Male = 1 AND test_result_num >184) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Male = 1 AND test_result_num >225) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Male = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Male = 1 AND test_result_num >292) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Male = 1 AND test_result_num >323) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Male = 1 AND test_result_num >362) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Male = 1 AND test_result_num >407) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Male = 1 AND test_result_num >454) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Male = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Male = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Male = 1 AND test_result_num >551) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Male = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Male = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Male = 1 AND test_result_num >521) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Male = 1 AND test_result_num >494) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Male = 1 AND test_result_num >463) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Male = 1 AND test_result_num >430) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Male = 1 AND test_result_num >355) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Male = 1 AND test_result_num >282) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Male = 1 AND test_result_num >233) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Male = 1 AND test_result_num >216) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Male = 1 AND test_result_num >200) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Male = 1 AND test_result_num >194) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Male = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Male = 1 AND test_result_num >192) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Male = 1 AND test_result_num >179) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Male = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Male = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Male
|
18
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IGF-1 Result case when IGF-1 Result = 1 AND '227.3' in (icd9_primary,icd9_secondary,icd9_third,icd9_fourth) then 1 else 0 end IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code
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19
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IGF-1 Result, Female CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Female = 1 AND test_result_num >126) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Female = 1 AND test_result_num >132) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Female = 1 AND test_result_num >145) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Female = 1 AND test_result_num >164) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Female = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Female = 1 AND test_result_num >214) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Female = 1 AND test_result_num >240) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Female = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Female = 1 AND test_result_num >305) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Female = 1 AND test_result_num >349) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Female = 1 AND test_result_num >400) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Female = 1 AND test_result_num >453) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Female = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Female = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Female = 1 AND test_result_num >552) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Female = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Female = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Female = 1 AND test_result_num >517) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Female = 1 AND test_result_num >486) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Female = 1 AND test_result_num >451) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Female = 1 AND test_result_num >416) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Female = 1 AND test_result_num >342) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Female = 1 AND test_result_num >270) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Female = 1 AND test_result_num >243) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Female = 1 AND test_result_num >227) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Female = 1 AND test_result_num >204) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Female = 1 AND test_result_num >195) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Female = 1 AND test_result_num >190) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Female = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Female = 1 AND test_result_num >169) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Female = 1 AND test_result_num >163) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Female = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Female = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Female = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Female = 1 AND test_result_num >178) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Female = 1 AND test_result_num >178) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Female
|
20
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-
IGF-1 Result, Abn High, Male IGF-1 Result, Abn High, Male = 1 OR IGF-1 Result, Abn High, Female = 1 IGF-1 Result, Abnormal
|
21
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-
IGF-1 Result, Has 253 ICD9 Code IGF-1 Result, Has 253 ICD9 Code = 1 OR IGF-1 Result, Abnormal = 1 Has Diag
|
22
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-
IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code prior history of IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Prior
|
23
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-
IGF-1 Result, Female CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Male = 1 AND test_result_num >157) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Male = 1 AND test_result_num >167) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Male = 1 AND test_result_num >184) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Male = 1 AND test_result_num >225) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Male = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Male = 1 AND test_result_num >292) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Male = 1 AND test_result_num >323) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Male = 1 AND test_result_num >362) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Male = 1 AND test_result_num >407) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Male = 1 AND test_result_num >454) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Male = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Male = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Male = 1 AND test_result_num >551) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Male = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Male = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Male = 1 AND test_result_num >521) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Male = 1 AND test_result_num >494) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Male = 1 AND test_result_num >463) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Male = 1 AND test_result_num >430) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Male = 1 AND test_result_num >355) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Male = 1 AND test_result_num >282) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Male = 1 AND test_result_num >233) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Male = 1 AND test_result_num >216) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Male = 1 AND test_result_num >200) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Male = 1 AND test_result_num >194) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Male = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Male = 1 AND test_result_num >192) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Male = 1 AND test_result_num >179) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Male = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Male = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Male
|
24
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-
IGF-1 Result, Abn High, Female IGF-1 Result, Abn High, Male = 1 OR IGF-1 Result, Abn High, Female = 1 IGF-1 Result, Abnormal
|
25
|
-
IGF-1 Result, Abnormal IGF-1 Result, Abnormal = 1 AND IGF-1 Result, Has 253 ICD9 Code = 1 Profile - Acromegarly - Patients With Abnormal IGF-1 Test and Acromegarly ICD9 Code
|
26
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-
IGF-1 Result IGF-1 Result = 1 AND patient_gender = 'F' IGF-1 Result, Female
|
27
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-
IGF-1 Result, Male CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Male = 1 AND test_result_num >157) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Male = 1 AND test_result_num >167) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Male = 1 AND test_result_num >184) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Male = 1 AND test_result_num >225) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Male = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Male = 1 AND test_result_num >292) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Male = 1 AND test_result_num >323) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Male = 1 AND test_result_num >362) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Male = 1 AND test_result_num >407) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Male = 1 AND test_result_num >454) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Male = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Male = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Male = 1 AND test_result_num >551) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Male = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Male = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Male = 1 AND test_result_num >521) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Male = 1 AND test_result_num >494) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Male = 1 AND test_result_num >463) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Male = 1 AND test_result_num >430) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Male = 1 AND test_result_num >355) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Male = 1 AND test_result_num >282) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Male = 1 AND test_result_num >233) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Male = 1 AND test_result_num >216) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Male = 1 AND test_result_num >200) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Male = 1 AND test_result_num >194) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Male = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Male = 1 AND test_result_num >192) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Male = 1 AND test_result_num >179) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Male = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Male = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Male
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28
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IGF-1 Result, Abnormal IGF-1 Result, Has 253 ICD9 Code = 1 OR IGF-1 Result, Abnormal = 1 Has Diag
|
29
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IGF-1 Result case when IGF-1 Result = 1 AND '253.0' in (icd9_primary,icd9_secondary,icd9_third,icd9_fourth) then 1 else 0 end IGF-1 Result, Has 253 ICD9 Code
|
30
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-
IGF-1 Result, Has 253 ICD9 Code IGF-1 Result, Abnormal = 0 AND IGF-1 Result, Has 253 ICD9 Code = 1 Profile - Acromegarly - Patients With Not Abnormal IGF-1 Test and Acromegarly ICD9 Code
|
31
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-
IGF-1 Result, Abnormal IGF-1 Result, Abnormal = 0 AND IGF-1 Result, Has 253 ICD9 Code = 1 Profile - Acromegarly - Patients With Not Abnormal IGF-1 Test and Acromegarly ICD9 Code
|
32
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-
IGF-1 Result, Abnormal IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Hist = 1 AND IGF-1 Result, Abnormal = 0 Profile - Acromegarly - Patients With Not Abnormal IGF-1 Test and Pituitary Gland Neoplasm ICD9 Code
|
data/example/cmap_to_sql.rb
DELETED
@@ -1,91 +0,0 @@
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1
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-
require '/Users/malarcon/medivo/cmap/lib/cmap.rb'
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2
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-
require 'pry'
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3
|
-
|
4
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class PpdmVelmaCode
|
5
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attr_reader :propositions_to_sql,:condition
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6
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-
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7
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-
def initialize(propositions_to_sql,condition)
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8
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-
@propositions_to_sql = propositions_to_sql
|
9
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-
@condition = condition
|
10
|
-
end
|
11
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-
|
12
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-
def save_to_file(filename,what_to_save)
|
13
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-
output = File.open( "#{filename}","w" )
|
14
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-
output << what_to_save
|
15
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-
output.close
|
16
|
-
end
|
17
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-
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18
|
-
def extract_create_sql
|
19
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-
"create table extracts.#{condition} (\n lab_result_id integer,\n input_filename varchar(255),\n patient_id varchar(255),\n patient_gender varchar(255),\n patient_date_of_birth varchar(255),\n patient_state varchar(255),\n diagnosis_codes varchar(255),\n test_result_name varchar(255),\n test_result_value varchar(255),\n test_result_abnormal_flag varchar(255),\n ordering_provider_npi_number varchar(255),\n ordering_provider_first_name varchar(255),\n ordering_provider_last_name varchar(255),\n ordering_practice_lab_account_number varchar(255),\n ordering_practice_address_line_1 varchar(255),\n ordering_practice_zip_code varchar(255),\n\n test_result_name_stnd varchar(128),\n test_result_value_numeric_stnd numeric(23,5),\n test_observation_reported_date varchar(255),\n test_specimen_draw_date varchar(255),\n test_specimen_receipt_date varchar(255),\n diag_1 varchar(16),\n diag_2 varchar(16),\n diag_3 varchar(16),\n diag_4 varchar(16),\n account_type varchar(255),\n provider_type varchar(255)\n);"
|
20
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-
end
|
21
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-
|
22
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-
def extract_select_sql
|
23
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-
extract_select = "select\n -- lochlomond fields\n lab_result_id,\n input_filename,\n token4 as patient_id,\n patient_gender,\n patient_date_of_birth,\n patient_state,\n diagnosis_codes,\n test_result_name,\n test_result_value,\n test_result_abnormal_flag,\n ordering_provider_npi_number,\n ordering_provider_first_name,\n ordering_provider_last_name,\n ordering_practice_lab_account_number,\n ordering_practice_address_line_1,\n ordering_practice_zip_code,\n\n -- standardized fields\n test_result_name_stnd,\n test_result_value_numeric_stnd,\n test_observation_reported_date,\n test_specimen_draw_date,\n test_specimen_receipt_date,\n diag_1,\n diag_2,\n diag_3,\n diag_4,\n account_type,\n provider_type\nfrom\n analytics.lab_result\nwhere"
|
24
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-
results_of_interest = propositions_to_sql.sanitized_graph.children(propositions_to_sql.table_name)
|
25
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-
vertices_of_results = propositions_to_sql.sanitized_graph.edges.select{|e| results_of_interest.include? e.destination_vertex}
|
26
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-
fields = vertices_of_results.map {|e| "#{e.value}" }.join(" or ")
|
27
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-
"#{extract_select} #{fields};"
|
28
|
-
end
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29
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-
|
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def transform_sql
|
31
|
-
transform_header = "set search_path to datamarts;\nDROP TABLE IF EXISTS ai_ppdm_acr;\n\nCREATE TABLE ai_ppdm_acr\n\nAS\n\nSELECT ROW_NUMBER() OVER (ORDER BY patient_id,test_observation_reported_date,lab_result_id) AS record_number,\nDENSE_RANK() OVER (PARTITION BY patient_id ORDER BY test_observation_reported_date ASC,test_result_name_stnd,lab_result_id) AS record_number_asc,\nDENSE_RANK() OVER (PARTITION BY patient_id ORDER BY test_observation_reported_date DESC,test_result_name_stnd,lab_result_id) AS record_number_desc,\nlab_result_id,\ninput_filename,\npatient_id,\nmd5(test_observation_reported_date||patient_id) patient_date_id,\npatient_gender,\npatient_date_of_birth as patient_birth_year,\nCASE WHEN left(test_observation_reported_date,4) = '' then null\nELSE left(test_observation_reported_date,4)::numeric - patient_date_of_birth::numeric END as patient_age,\npatient_state,\ntest_result_name_stnd,\ntest_result_name,\nCASE WHEN test_result_value_numeric_stnd is null and test_result_value like '%<%' or test_result_value like '%>%' then replace(case WHEN test_result_value ~* '< ?[0-9]+ ?not detected' then '0' ELSE regexp_substr(test_result_value,'[0-9]+(\.[0-9]+)? ?') end,',','') *1.00\n WHEN test_result_value_numeric_stnd is null and test_result_value like '%E6' then replace(test_result_value,'E6','')*1000000.00\n WHEN test_result_value_numeric_stnd is null and test_result_value like '%E5' then replace(test_result_value,'E5','')*100000.00\n WHEN test_result_value_numeric_stnd is null and test_result_value like '%E4' then replace(test_result_value,'E4','')*10000.00\n WHEN test_result_value_numeric_stnd is null and test_result_value ~* 'not detected' then 0.00\n WHEN test_result_value_numeric_stnd is null and test_result_value ~* 'detected' then 1.00\nELSE test_result_value_numeric_stnd end test_result_num,\ntest_result_value,\ntest_result_abnormal_flag as test_abnorm_flag,\nTO_DATE(CASE WHEN test_observation_reported_date = '' THEN test_specimen_receipt_date ELSE test_observation_reported_date END,'YYYYMMDD') test_observation_reported_date_dt,\nLEFT (CASE WHEN test_observation_reported_date = '' THEN test_specimen_receipt_date ELSE test_observation_reported_date END,6)*1 test_observation_reported_date_yyyymm,\nTO_DATE(test_specimen_draw_date,'YYYYMMDD') test_specimen_draw_date_dt,\nmd5(coalesce(ordering_provider_npi_number,'')|| coalesce(ordering_provider_first_name,'')||coalesce(ordering_provider_last_name,'')) provider_id,\nordering_practice_lab_account_number practice_id,\nCASE\n WHEN lower(account_type) IN ('other','jail','military','n/a',' ','deleted account') THEN 'Non-Reference'\n WHEN account_type is null THEN 'Non-Reference'\n WHEN lower(account_type) IN ('lab') THEN 'Reference'\n WHEN lower(account_type) IN ('foreign') THEN 'Non-USA'\n ELSE 'UNMAPPED' ||account_type\n END account_type_val,\nprovider_type,\ndiag_1 as icd9_primary,\ndiag_2 as icd9_secondary,\ndiag_3 as icd9_third,\ndiag_4 as icd9_fourth,\nordering_practice_address_line_1 IS NOT NULL has_practice_info,\n((ordering_provider_first_name IS NOT NULL AND ordering_provider_last_name IS NOT NULL) OR ordering_provider_npi_number IS NOT NULL) has_provider_info,\nordering_provider_npi_number <> '' has_npi,\nordering_practice_zip_code\nFROM extracts.#{condition};\n\n"
|
32
|
-
transform_body = propositions_to_sql.queries.join("\n")
|
33
|
-
"#{transform_header}\n#{transform_body}\n;"
|
34
|
-
end
|
35
|
-
|
36
|
-
def transform_qa_sql
|
37
|
-
transform_qa_header = "set search_path to datamarts; \nselect "
|
38
|
-
fields_to_sum= propositions_to_sql.sanitized_graph.vertices.select {|v| v != propositions_to_sql.table_name}
|
39
|
-
transform_body = fields_to_sum.map {|e| "sum(#{e}) #{e}" }.join("\n, ")
|
40
|
-
transform_body_from ="from #{propositions_to_sql.table_name}"
|
41
|
-
"#{transform_qa_header}\n#{transform_body}\n#{transform_body_from};"
|
42
|
-
end
|
43
|
-
|
44
|
-
end
|
45
|
-
|
46
|
-
|
47
|
-
if ARGV.empty?
|
48
|
-
puts "USAGE: #{$0} <CONDITION>"
|
49
|
-
exit
|
50
|
-
end
|
51
|
-
|
52
|
-
condition = ARGV[0]
|
53
|
-
|
54
|
-
|
55
|
-
propositions_path = File.expand_path("./"+condition+".txt", File.dirname(__FILE__))
|
56
|
-
|
57
|
-
subquery_gsubs = [
|
58
|
-
["prior history of", "update +table_name+ set +destination_vertex+=(SELECT count(*) FROM +table_name+ n1 WHERE n1.patient_id = +table_name+.patient_id AND n1.test_specimen_draw_date_dt <+table_name+.test_specimen_draw_date_dt AND +origin_vertex+=1)>0;"],
|
59
|
-
["equals", "update +table_name+ set +destination_vertex+= +origin_vertex+;"],
|
60
|
-
["order has","update +table_name+ set +destination_vertex+=(SELECT max(+origin_vertex+) FROM +table_name+ n1 WHERE n1.patient_id = +table_name+.patient_id AND n1.order_id = +table_name+.order_id );"]
|
61
|
-
]
|
62
|
-
|
63
|
-
root_name = "ai_ppdm_"+condition
|
64
|
-
args = {
|
65
|
-
propositions_path: propositions_path,
|
66
|
-
table_name: root_name,
|
67
|
-
subquery_gsubs: subquery_gsubs
|
68
|
-
}
|
69
|
-
|
70
|
-
propositions_to_sql = Cmap::PropositionsToSql.new(args)
|
71
|
-
|
72
|
-
ppdm_extract_code = PpdmVelmaCode.new(propositions_to_sql,condition)
|
73
|
-
|
74
|
-
puts "\n################################\nSQL - EXTRACT CREATE - #{root_name} - create.sql\n################################\n"
|
75
|
-
#puts ppdm_extract_code.extract_create_sql
|
76
|
-
ppdm_extract_code.save_to_file("create.sql",ppdm_extract_code.extract_create_sql)
|
77
|
-
|
78
|
-
puts "\n################################\nSQL - EXTRACT SELECT - #{root_name} - select.sql\n################################\n"
|
79
|
-
#puts ppdm_extract_code.extract_select_sql
|
80
|
-
ppdm_extract_code.save_to_file("select.sql",ppdm_extract_code.extract_select_sql)
|
81
|
-
|
82
|
-
|
83
|
-
puts "\n################################\nSQL - TRANSFORM - #{root_name} - #{root_name}.sql\n################################\n"
|
84
|
-
ppdm_extract_code.save_to_file("#{root_name}.sql",ppdm_extract_code.transform_sql)
|
85
|
-
#puts ppdm_extract_code.transform_sql
|
86
|
-
|
87
|
-
puts "\n################################\nSQL - TRANSFORM QA - #{root_name} - #{root_name}_qa.sql\n################################\n"
|
88
|
-
ppdm_extract_code.save_to_file("#{root_name}_qa.sql",ppdm_extract_code.transform_qa_sql)
|
89
|
-
#puts ppdm_extract_code.transform_qa_sql
|
90
|
-
|
91
|
-
#binding.pry
|
@@ -1,46 +0,0 @@
|
|
1
|
-
module Cmap; class EdgesToQueries
|
2
|
-
|
3
|
-
attr_reader :edges, :table_name, :schema_name, :subquery_expander
|
4
|
-
|
5
|
-
def initialize(edges, table_name, schema_name, subquery_expander)
|
6
|
-
@edges = edges
|
7
|
-
@table_name = table_name
|
8
|
-
@schema_name = schema_name
|
9
|
-
@subquery_expander = subquery_expander
|
10
|
-
end
|
11
|
-
|
12
|
-
def queries
|
13
|
-
add_columns_queries +
|
14
|
-
gsub_subqueries +
|
15
|
-
updates
|
16
|
-
.delete_if {|q| q.empty?}
|
17
|
-
end
|
18
|
-
|
19
|
-
private
|
20
|
-
|
21
|
-
def unique_edges
|
22
|
-
edges.uniq {|e| [e.destination_vertex.data[:sanitized_name], e.data[:sanitized_value]]}
|
23
|
-
end
|
24
|
-
|
25
|
-
def add_columns_queries
|
26
|
-
unique_edges.map {|e| "alter table #{schema_name}.#{table_name} add column #{e.destination_vertex.data[:sanitized_name]} int2;"}
|
27
|
-
end
|
28
|
-
|
29
|
-
def grouped_edges
|
30
|
-
unique_edges.group_by {|e| subquery_expander.update_query?(e)}
|
31
|
-
end
|
32
|
-
|
33
|
-
def gsub_subqueries
|
34
|
-
(grouped_edges[true] || []).map {|e| subquery_expander.query(e)}
|
35
|
-
end
|
36
|
-
|
37
|
-
def updates
|
38
|
-
u = (grouped_edges[false] || []).map do |e|
|
39
|
-
"#{e.destination_vertex.data[:sanitized_name]}=(#{e.data[:sanitized_value]})::int"
|
40
|
-
end.join(", ")
|
41
|
-
return [] if u.empty?
|
42
|
-
["update #{schema_name}.#{table_name} set #{u};"]
|
43
|
-
end
|
44
|
-
|
45
|
-
end; end
|
46
|
-
|
data/lib/cmap/graph_to_sql.rb
DELETED
@@ -1,34 +0,0 @@
|
|
1
|
-
module Cmap; class GraphToSql
|
2
|
-
|
3
|
-
attr_reader :table_name, :schema_name, :graph, :subquery_gsubs
|
4
|
-
|
5
|
-
def initialize(table_name, schema_name, graph, subquery_gsubs = [])
|
6
|
-
@table_name = table_name
|
7
|
-
@schema_name = schema_name
|
8
|
-
@graph = graph
|
9
|
-
@subquery_gsubs = subquery_gsubs
|
10
|
-
end
|
11
|
-
|
12
|
-
def queries
|
13
|
-
sorted_grouped_edges.inject([]) do |memo, (_, edges)|
|
14
|
-
memo += (EdgesToQueries.new(edges, table_name, schema_name, subquery_expander).queries)
|
15
|
-
memo
|
16
|
-
end
|
17
|
-
end
|
18
|
-
|
19
|
-
private
|
20
|
-
|
21
|
-
def subquery_expander
|
22
|
-
SubqueryExpander.new(table_name: table_name, schema_name: schema_name, subquery_gsubs: subquery_gsubs)
|
23
|
-
end
|
24
|
-
|
25
|
-
def sorted_grouped_edges
|
26
|
-
Hash[grouped_edges.sort]
|
27
|
-
end
|
28
|
-
|
29
|
-
def grouped_edges
|
30
|
-
graph.edges.group_by {|e| graph.longest_path(table_name, e.destination_vertex).length}
|
31
|
-
end
|
32
|
-
|
33
|
-
end; end
|
34
|
-
|
@@ -1,29 +0,0 @@
|
|
1
|
-
module Cmap; class PropositionsToSql
|
2
|
-
|
3
|
-
attr_reader :propositions_path, :table_name, :schema_name, :subquery_gsubs
|
4
|
-
|
5
|
-
def initialize(args)
|
6
|
-
@propositions_path = args.fetch(:propositions_path)
|
7
|
-
@table_name = args.fetch(:table_name)
|
8
|
-
@schema_name = args.fetch(:schema_name)
|
9
|
-
@subquery_gsubs = args.fetch(:subquery_gsubs, [])
|
10
|
-
end
|
11
|
-
|
12
|
-
def queries
|
13
|
-
graph_to_sql.queries
|
14
|
-
end
|
15
|
-
|
16
|
-
def propositions_to_graph
|
17
|
-
PropositionsToGraph.new(propositions_path)
|
18
|
-
end
|
19
|
-
|
20
|
-
def raw_graph
|
21
|
-
propositions_to_graph.graph
|
22
|
-
end
|
23
|
-
|
24
|
-
def graph_to_sql
|
25
|
-
GraphToSql.new(table_name, schema_name, raw_graph, subquery_gsubs)
|
26
|
-
end
|
27
|
-
|
28
|
-
end; end
|
29
|
-
|
data/lib/cmap/sql_runner.rb
DELETED
@@ -1,21 +0,0 @@
|
|
1
|
-
module Cmap; class SqlRunner
|
2
|
-
|
3
|
-
attr_reader :db_config
|
4
|
-
|
5
|
-
def initialize(db_config)
|
6
|
-
@db_config = db_config
|
7
|
-
end
|
8
|
-
|
9
|
-
def run_queries(queries)
|
10
|
-
queries.each do |q|
|
11
|
-
connection.exec(q)
|
12
|
-
end
|
13
|
-
end
|
14
|
-
|
15
|
-
def connection
|
16
|
-
@connection ||= PGconn.connect(db_config)
|
17
|
-
end
|
18
|
-
|
19
|
-
end; end
|
20
|
-
|
21
|
-
|
@@ -1,28 +0,0 @@
|
|
1
|
-
module Cmap; class SubqueryExpander
|
2
|
-
|
3
|
-
attr_reader :table_name, :schema_name, :subquery_gsubs
|
4
|
-
|
5
|
-
def initialize(args)
|
6
|
-
@table_name = args.fetch(:table_name)
|
7
|
-
@schema_name = args.fetch(:schema_name)
|
8
|
-
@subquery_gsubs = args.fetch(:subquery_gsubs, [])
|
9
|
-
end
|
10
|
-
|
11
|
-
def update_query?(edge)
|
12
|
-
edge.data[:sanitized_value] != query(edge)
|
13
|
-
end
|
14
|
-
|
15
|
-
def query(edge)
|
16
|
-
r = edge.data[:sanitized_value]
|
17
|
-
replacements = [
|
18
|
-
["+table_name+", table_name],
|
19
|
-
["+schema_name+", schema_name],
|
20
|
-
["+destination_vertex+", edge.destination_vertex.data[:sanitized_name]],
|
21
|
-
["+origin_vertex+", edge.origin_vertex.data[:sanitized_name]]
|
22
|
-
]
|
23
|
-
(subquery_gsubs + replacements).each {|gsub| r = r.gsub(*gsub)}
|
24
|
-
r
|
25
|
-
end
|
26
|
-
|
27
|
-
end; end
|
28
|
-
|