cmap 0.2.0 → 0.3.0
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- checksums.yaml +4 -4
- data/cmap.gemspec +1 -2
- data/example/acr.txt +32 -0
- data/example/cmap_to_sql.rb +91 -0
- data/lib/cmap/edges_to_queries.rb +43 -0
- data/lib/cmap/graph_sanitizer.rb +44 -0
- data/lib/cmap/graph_to_sql.rb +11 -26
- data/lib/cmap/propositions_to_graph.rb +6 -6
- data/lib/cmap/propositions_to_sql.rb +32 -0
- data/lib/cmap/subquery_expander.rb +22 -0
- data/lib/cmap/version.rb +1 -1
- data/lib/cmap.rb +5 -1
- metadata +12 -20
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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---
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SHA1:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 48ee02def6c2ba51722af4bd490b39bcd310ce1e
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data.tar.gz: c65a0293ee805f17bbcf662f907f22538d064461
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5
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 6949e80f0d48124ebe8d570b26e3a53f8924d7a573442f6f1dcd1a50185bef93ab91ae396fa49ff9d8886d5a4cc71aac1a1fa66951ad9080857e259377304ffb
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data.tar.gz: e15dfa04a3323273bf83296c85b24d24b3fe5d0af05136c38b4aa7ac9a2837278d09cf41ebfa9ded52c8c0dc19f26669c856306dc164b91df6199dfed4b34e5c
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data/cmap.gemspec
CHANGED
data/example/acr.txt
ADDED
@@ -0,0 +1,32 @@
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IGF-1 Result, Female CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Male = 1 AND test_result_num >157) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Male = 1 AND test_result_num >167) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Male = 1 AND test_result_num >184) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Male = 1 AND test_result_num >225) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Male = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Male = 1 AND test_result_num >292) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Male = 1 AND test_result_num >323) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Male = 1 AND test_result_num >362) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Male = 1 AND test_result_num >407) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Male = 1 AND test_result_num >454) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Male = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Male = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Male = 1 AND test_result_num >551) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Male = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Male = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Male = 1 AND test_result_num >521) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Male = 1 AND test_result_num >494) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Male = 1 AND test_result_num >463) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Male = 1 AND test_result_num >430) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Male = 1 AND test_result_num >355) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Male = 1 AND test_result_num >282) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Male = 1 AND test_result_num >233) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Male = 1 AND test_result_num >216) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Male = 1 AND test_result_num >200) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Male = 1 AND test_result_num >194) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Male = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Male = 1 AND test_result_num >192) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Male = 1 AND test_result_num >179) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Male = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Male = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Male
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ai_ppdm_acr test_result_name_stnd = 'IGF-I' IGF-1 Result
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IGF-1 Result, Has 253 ICD9 Code IGF-1 Result, Abnormal = 1 AND IGF-1 Result, Has 253 ICD9 Code = 1 Profile - Acromegarly - Patients With Abnormal IGF-1 Test and Acromegarly ICD9 Code
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IGF-1 Result, Has 253 ICD9 Code IGF-1 Result, Abnormal = 0 AND IGF-1 Result, Has 253 ICD9 Code = 0 Profile - Acromegarly - Patients With Not Abnormal IGF-1 Test and Other ICD9 Code
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IGF-1 Result, Abnormal IGF-1 Result, Abnormal = 1 AND IGF-1 Result, Has 253 ICD9 Code = 0 Profile - Acromegarly - Patients With Abnormal IGF-1 Test and Other ICD9 Code
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IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Hist IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Hist = 1 AND IGF-1 Result, Abnormal = 0 Profile - Acromegarly - Patients With Not Abnormal IGF-1 Test and Pituitary Gland Neoplasm ICD9 Code
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IGF-1 Result, Age Group CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Male = 1 AND test_result_num >157) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Male = 1 AND test_result_num >167) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Male = 1 AND test_result_num >184) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Male = 1 AND test_result_num >225) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Male = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Male = 1 AND test_result_num >292) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Male = 1 AND test_result_num >323) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Male = 1 AND test_result_num >362) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Male = 1 AND test_result_num >407) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Male = 1 AND test_result_num >454) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Male = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Male = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Male = 1 AND test_result_num >551) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Male = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Male = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Male = 1 AND test_result_num >521) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Male = 1 AND test_result_num >494) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Male = 1 AND test_result_num >463) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Male = 1 AND test_result_num >430) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Male = 1 AND test_result_num >355) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Male = 1 AND test_result_num >282) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Male = 1 AND test_result_num >233) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Male = 1 AND test_result_num >216) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Male = 1 AND test_result_num >200) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Male = 1 AND test_result_num >194) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Male = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Male = 1 AND test_result_num >192) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Male = 1 AND test_result_num >179) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Male = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Male = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Male
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Has Diag equals Profile - Acromegarly - Diagnosed Patients
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IGF-1 Result, Male CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Male = 1 AND test_result_num >157) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Male = 1 AND test_result_num >167) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Male = 1 AND test_result_num >184) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Male = 1 AND test_result_num >225) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Male = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Male = 1 AND test_result_num >292) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Male = 1 AND test_result_num >323) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Male = 1 AND test_result_num >362) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Male = 1 AND test_result_num >407) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Male = 1 AND test_result_num >454) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Male = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Male = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Male = 1 AND test_result_num >551) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Male = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Male = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Male = 1 AND test_result_num >521) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Male = 1 AND test_result_num >494) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Male = 1 AND test_result_num >463) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Male = 1 AND test_result_num >430) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Male = 1 AND test_result_num >355) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Male = 1 AND test_result_num >282) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Male = 1 AND test_result_num >233) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Male = 1 AND test_result_num >216) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Male = 1 AND test_result_num >200) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Male = 1 AND test_result_num >194) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Male = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Male = 1 AND test_result_num >192) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Male = 1 AND test_result_num >179) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Male = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Male = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Male
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IGF-1 Result, Abnormal IGF-1 Result, Abnormal = 0 AND IGF-1 Result, Has 253 ICD9 Code = 0 Profile - Acromegarly - Patients With Not Abnormal IGF-1 Test and Other ICD9 Code
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IGF-1 Result IGF-1 Result = 1 AND patient_gender = 'M' IGF-1 Result, Male
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IGF-1 Result CASE WHEN IGF-1 Result = 1 AND patient_age < 20 THEN patient_age WHEN IGF-1 Result = 1 AND patient_age BETWEEN 21 AND 25 THEN 21 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 26 AND 30 THEN 26 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 31 AND 35 THEN 31 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 36 AND 40 THEN 36 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 41 AND 45 THEN 41 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 46 AND 50 THEN 46 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 51 AND 55 THEN 51 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 56 AND 60 THEN 56 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 61 AND 65 THEN 61 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 66 AND 70 THEN 66 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 71 AND 75 THEN 71 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 76 AND 80 THEN 76 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 81 AND 85 THEN 81 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 86 AND 90 THEN 86 WHEN IGF-1 Result = 1 AND patient_age > 90 THEN 91 END IGF-1 Result, Age Group
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IGF-1 Result, Age Group CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Female = 1 AND test_result_num >126) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Female = 1 AND test_result_num >132) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Female = 1 AND test_result_num >145) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Female = 1 AND test_result_num >164) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Female = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Female = 1 AND test_result_num >214) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Female = 1 AND test_result_num >240) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Female = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Female = 1 AND test_result_num >305) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Female = 1 AND test_result_num >349) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Female = 1 AND test_result_num >400) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Female = 1 AND test_result_num >453) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Female = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Female = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Female = 1 AND test_result_num >552) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Female = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Female = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Female = 1 AND test_result_num >517) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Female = 1 AND test_result_num >486) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Female = 1 AND test_result_num >451) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Female = 1 AND test_result_num >416) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Female = 1 AND test_result_num >342) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Female = 1 AND test_result_num >270) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Female = 1 AND test_result_num >243) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Female = 1 AND test_result_num >227) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Female = 1 AND test_result_num >204) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Female = 1 AND test_result_num >195) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Female = 1 AND test_result_num >190) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Female = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Female = 1 AND test_result_num >169) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Female = 1 AND test_result_num >163) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Female = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Female = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Female = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Female = 1 AND test_result_num >178) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Female = 1 AND test_result_num >178) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Female
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IGF-1 Result, Male CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Female = 1 AND test_result_num >126) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Female = 1 AND test_result_num >132) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Female = 1 AND test_result_num >145) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Female = 1 AND test_result_num >164) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Female = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Female = 1 AND test_result_num >214) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Female = 1 AND test_result_num >240) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Female = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Female = 1 AND test_result_num >305) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Female = 1 AND test_result_num >349) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Female = 1 AND test_result_num >400) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Female = 1 AND test_result_num >453) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Female = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Female = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Female = 1 AND test_result_num >552) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Female = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Female = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Female = 1 AND test_result_num >517) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Female = 1 AND test_result_num >486) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Female = 1 AND test_result_num >451) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Female = 1 AND test_result_num >416) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Female = 1 AND test_result_num >342) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Female = 1 AND test_result_num >270) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Female = 1 AND test_result_num >243) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Female = 1 AND test_result_num >227) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Female = 1 AND test_result_num >204) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Female = 1 AND test_result_num >195) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Female = 1 AND test_result_num >190) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Female = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Female = 1 AND test_result_num >169) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Female = 1 AND test_result_num >163) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Female = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Female = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Female = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Female = 1 AND test_result_num >178) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Female = 1 AND test_result_num >178) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Female
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15
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IGF-1 Result, Has 253 ICD9 Code IGF-1 Result, Abnormal = 1 AND IGF-1 Result, Has 253 ICD9 Code = 0 Profile - Acromegarly - Patients With Abnormal IGF-1 Test and Other ICD9 Code
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16
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IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Prior (IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code = 1) OR (IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Prior = 1) IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Hist
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IGF-1 Result, Age Group CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Male = 1 AND test_result_num >157) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Male = 1 AND test_result_num >167) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Male = 1 AND test_result_num >184) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Male = 1 AND test_result_num >225) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Male = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Male = 1 AND test_result_num >292) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Male = 1 AND test_result_num >323) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Male = 1 AND test_result_num >362) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Male = 1 AND test_result_num >407) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Male = 1 AND test_result_num >454) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Male = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Male = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Male = 1 AND test_result_num >551) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Male = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Male = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Male = 1 AND test_result_num >521) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Male = 1 AND test_result_num >494) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Male = 1 AND test_result_num >463) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Male = 1 AND test_result_num >430) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Male = 1 AND test_result_num >355) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Male = 1 AND test_result_num >282) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Male = 1 AND test_result_num >233) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Male = 1 AND test_result_num >216) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Male = 1 AND test_result_num >200) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Male = 1 AND test_result_num >194) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Male = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Male = 1 AND test_result_num >192) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Male = 1 AND test_result_num >179) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Male = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Male = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Male
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IGF-1 Result case when IGF-1 Result = 1 AND '227.3' in (icd9_primary,icd9_secondary,icd9_third,icd9_fourth) then 1 else 0 end IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code
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19
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IGF-1 Result, Female CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Female = 1 AND test_result_num >126) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Female = 1 AND test_result_num >132) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Female = 1 AND test_result_num >145) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Female = 1 AND test_result_num >164) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Female = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Female = 1 AND test_result_num >214) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Female = 1 AND test_result_num >240) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Female = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Female = 1 AND test_result_num >305) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Female = 1 AND test_result_num >349) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Female = 1 AND test_result_num >400) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Female = 1 AND test_result_num >453) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Female = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Female = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Female = 1 AND test_result_num >552) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Female = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Female = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Female = 1 AND test_result_num >517) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Female = 1 AND test_result_num >486) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Female = 1 AND test_result_num >451) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Female = 1 AND test_result_num >416) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Female = 1 AND test_result_num >342) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Female = 1 AND test_result_num >270) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Female = 1 AND test_result_num >243) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Female = 1 AND test_result_num >227) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Female = 1 AND test_result_num >204) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Female = 1 AND test_result_num >195) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Female = 1 AND test_result_num >190) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Female = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Female = 1 AND test_result_num >169) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Female = 1 AND test_result_num >163) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Female = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Female = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Female = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Female = 1 AND test_result_num >178) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Female = 1 AND test_result_num >178) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Female
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IGF-1 Result, Abn High, Male IGF-1 Result, Abn High, Male = 1 OR IGF-1 Result, Abn High, Female = 1 IGF-1 Result, Abnormal
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21
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IGF-1 Result, Has 253 ICD9 Code IGF-1 Result, Has 253 ICD9 Code = 1 OR IGF-1 Result, Abnormal = 1 Has Diag
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22
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IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code prior history of IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Prior
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23
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IGF-1 Result, Female CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Male = 1 AND test_result_num >157) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Male = 1 AND test_result_num >167) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Male = 1 AND test_result_num >184) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Male = 1 AND test_result_num >225) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Male = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Male = 1 AND test_result_num >292) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Male = 1 AND test_result_num >323) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Male = 1 AND test_result_num >362) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Male = 1 AND test_result_num >407) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Male = 1 AND test_result_num >454) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Male = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Male = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Male = 1 AND test_result_num >551) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Male = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Male = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Male = 1 AND test_result_num >521) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Male = 1 AND test_result_num >494) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Male = 1 AND test_result_num >463) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Male = 1 AND test_result_num >430) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Male = 1 AND test_result_num >355) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Male = 1 AND test_result_num >282) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Male = 1 AND test_result_num >233) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Male = 1 AND test_result_num >216) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Male = 1 AND test_result_num >200) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Male = 1 AND test_result_num >194) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Male = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Male = 1 AND test_result_num >192) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Male = 1 AND test_result_num >179) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Male = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Male = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Male
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24
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IGF-1 Result, Abn High, Female IGF-1 Result, Abn High, Male = 1 OR IGF-1 Result, Abn High, Female = 1 IGF-1 Result, Abnormal
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25
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IGF-1 Result, Abnormal IGF-1 Result, Abnormal = 1 AND IGF-1 Result, Has 253 ICD9 Code = 1 Profile - Acromegarly - Patients With Abnormal IGF-1 Test and Acromegarly ICD9 Code
|
26
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+
IGF-1 Result IGF-1 Result = 1 AND patient_gender = 'F' IGF-1 Result, Female
|
27
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+
IGF-1 Result, Male CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Male = 1 AND test_result_num >157) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Male = 1 AND test_result_num >167) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Male = 1 AND test_result_num >184) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Male = 1 AND test_result_num >225) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Male = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Male = 1 AND test_result_num >292) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Male = 1 AND test_result_num >323) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Male = 1 AND test_result_num >362) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Male = 1 AND test_result_num >407) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Male = 1 AND test_result_num >454) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Male = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Male = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Male = 1 AND test_result_num >551) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Male = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Male = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Male = 1 AND test_result_num >521) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Male = 1 AND test_result_num >494) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Male = 1 AND test_result_num >463) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Male = 1 AND test_result_num >430) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Male = 1 AND test_result_num >355) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Male = 1 AND test_result_num >282) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Male = 1 AND test_result_num >233) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Male = 1 AND test_result_num >216) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Male = 1 AND test_result_num >200) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Male = 1 AND test_result_num >194) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Male = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Male = 1 AND test_result_num >192) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Male = 1 AND test_result_num >179) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Male = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Male = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Male
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28
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IGF-1 Result, Abnormal IGF-1 Result, Has 253 ICD9 Code = 1 OR IGF-1 Result, Abnormal = 1 Has Diag
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29
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IGF-1 Result case when IGF-1 Result = 1 AND '253.0' in (icd9_primary,icd9_secondary,icd9_third,icd9_fourth) then 1 else 0 end IGF-1 Result, Has 253 ICD9 Code
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30
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IGF-1 Result, Has 253 ICD9 Code IGF-1 Result, Abnormal = 0 AND IGF-1 Result, Has 253 ICD9 Code = 1 Profile - Acromegarly - Patients With Not Abnormal IGF-1 Test and Acromegarly ICD9 Code
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31
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IGF-1 Result, Abnormal IGF-1 Result, Abnormal = 0 AND IGF-1 Result, Has 253 ICD9 Code = 1 Profile - Acromegarly - Patients With Not Abnormal IGF-1 Test and Acromegarly ICD9 Code
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32
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IGF-1 Result, Abnormal IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Hist = 1 AND IGF-1 Result, Abnormal = 0 Profile - Acromegarly - Patients With Not Abnormal IGF-1 Test and Pituitary Gland Neoplasm ICD9 Code
|
@@ -0,0 +1,91 @@
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1
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+
require '/Users/malarcon/medivo/cmap/lib/cmap.rb'
|
2
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+
require 'pry'
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3
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+
|
4
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+
class PpdmVelmaCode
|
5
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+
attr_reader :propositions_to_sql,:condition
|
6
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+
|
7
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+
def initialize(propositions_to_sql,condition)
|
8
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+
@propositions_to_sql = propositions_to_sql
|
9
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+
@condition = condition
|
10
|
+
end
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11
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+
|
12
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+
def save_to_file(filename,what_to_save)
|
13
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+
output = File.open( "#{filename}","w" )
|
14
|
+
output << what_to_save
|
15
|
+
output.close
|
16
|
+
end
|
17
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+
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18
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+
def extract_create_sql
|
19
|
+
"create table extracts.#{condition} (\n lab_result_id integer,\n input_filename varchar(255),\n patient_id varchar(255),\n patient_gender varchar(255),\n patient_date_of_birth varchar(255),\n patient_state varchar(255),\n diagnosis_codes varchar(255),\n test_result_name varchar(255),\n test_result_value varchar(255),\n test_result_abnormal_flag varchar(255),\n ordering_provider_npi_number varchar(255),\n ordering_provider_first_name varchar(255),\n ordering_provider_last_name varchar(255),\n ordering_practice_lab_account_number varchar(255),\n ordering_practice_address_line_1 varchar(255),\n ordering_practice_zip_code varchar(255),\n\n test_result_name_stnd varchar(128),\n test_result_value_numeric_stnd numeric(23,5),\n test_observation_reported_date varchar(255),\n test_specimen_draw_date varchar(255),\n test_specimen_receipt_date varchar(255),\n diag_1 varchar(16),\n diag_2 varchar(16),\n diag_3 varchar(16),\n diag_4 varchar(16),\n account_type varchar(255),\n provider_type varchar(255)\n);"
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+
end
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def extract_select_sql
|
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extract_select = "select\n -- lochlomond fields\n lab_result_id,\n input_filename,\n token4 as patient_id,\n patient_gender,\n patient_date_of_birth,\n patient_state,\n diagnosis_codes,\n test_result_name,\n test_result_value,\n test_result_abnormal_flag,\n ordering_provider_npi_number,\n ordering_provider_first_name,\n ordering_provider_last_name,\n ordering_practice_lab_account_number,\n ordering_practice_address_line_1,\n ordering_practice_zip_code,\n\n -- standardized fields\n test_result_name_stnd,\n test_result_value_numeric_stnd,\n test_observation_reported_date,\n test_specimen_draw_date,\n test_specimen_receipt_date,\n diag_1,\n diag_2,\n diag_3,\n diag_4,\n account_type,\n provider_type\nfrom\n analytics.lab_result\nwhere"
|
24
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+
results_of_interest = propositions_to_sql.sanitized_graph.children(propositions_to_sql.table_name)
|
25
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+
vertices_of_results = propositions_to_sql.sanitized_graph.edges.select{|e| results_of_interest.include? e.destination_vertex}
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26
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fields = vertices_of_results.map {|e| "#{e.value}" }.join(" or ")
|
27
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+
"#{extract_select} #{fields};"
|
28
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+
end
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29
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+
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30
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def transform_sql
|
31
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transform_header = "set search_path to datamarts;\nDROP TABLE IF EXISTS ai_ppdm_acr;\n\nCREATE TABLE ai_ppdm_acr\n\nAS\n\nSELECT ROW_NUMBER() OVER (ORDER BY patient_id,test_observation_reported_date,lab_result_id) AS record_number,\nDENSE_RANK() OVER (PARTITION BY patient_id ORDER BY test_observation_reported_date ASC,test_result_name_stnd,lab_result_id) AS record_number_asc,\nDENSE_RANK() OVER (PARTITION BY patient_id ORDER BY test_observation_reported_date DESC,test_result_name_stnd,lab_result_id) AS record_number_desc,\nlab_result_id,\ninput_filename,\npatient_id,\nmd5(test_observation_reported_date||patient_id) patient_date_id,\npatient_gender,\npatient_date_of_birth as patient_birth_year,\nCASE WHEN left(test_observation_reported_date,4) = '' then null\nELSE left(test_observation_reported_date,4)::numeric - patient_date_of_birth::numeric END as patient_age,\npatient_state,\ntest_result_name_stnd,\ntest_result_name,\nCASE WHEN test_result_value_numeric_stnd is null and test_result_value like '%<%' or test_result_value like '%>%' then replace(case WHEN test_result_value ~* '< ?[0-9]+ ?not detected' then '0' ELSE regexp_substr(test_result_value,'[0-9]+(\.[0-9]+)? ?') end,',','') *1.00\n WHEN test_result_value_numeric_stnd is null and test_result_value like '%E6' then replace(test_result_value,'E6','')*1000000.00\n WHEN test_result_value_numeric_stnd is null and test_result_value like '%E5' then replace(test_result_value,'E5','')*100000.00\n WHEN test_result_value_numeric_stnd is null and test_result_value like '%E4' then replace(test_result_value,'E4','')*10000.00\n WHEN test_result_value_numeric_stnd is null and test_result_value ~* 'not detected' then 0.00\n WHEN test_result_value_numeric_stnd is null and test_result_value ~* 'detected' then 1.00\nELSE test_result_value_numeric_stnd end test_result_num,\ntest_result_value,\ntest_result_abnormal_flag as test_abnorm_flag,\nTO_DATE(CASE WHEN test_observation_reported_date = '' THEN test_specimen_receipt_date ELSE test_observation_reported_date END,'YYYYMMDD') test_observation_reported_date_dt,\nLEFT (CASE WHEN test_observation_reported_date = '' THEN test_specimen_receipt_date ELSE test_observation_reported_date END,6)*1 test_observation_reported_date_yyyymm,\nTO_DATE(test_specimen_draw_date,'YYYYMMDD') test_specimen_draw_date_dt,\nmd5(coalesce(ordering_provider_npi_number,'')|| coalesce(ordering_provider_first_name,'')||coalesce(ordering_provider_last_name,'')) provider_id,\nordering_practice_lab_account_number practice_id,\nCASE\n WHEN lower(account_type) IN ('other','jail','military','n/a',' ','deleted account') THEN 'Non-Reference'\n WHEN account_type is null THEN 'Non-Reference'\n WHEN lower(account_type) IN ('lab') THEN 'Reference'\n WHEN lower(account_type) IN ('foreign') THEN 'Non-USA'\n ELSE 'UNMAPPED' ||account_type\n END account_type_val,\nprovider_type,\ndiag_1 as icd9_primary,\ndiag_2 as icd9_secondary,\ndiag_3 as icd9_third,\ndiag_4 as icd9_fourth,\nordering_practice_address_line_1 IS NOT NULL has_practice_info,\n((ordering_provider_first_name IS NOT NULL AND ordering_provider_last_name IS NOT NULL) OR ordering_provider_npi_number IS NOT NULL) has_provider_info,\nordering_provider_npi_number <> '' has_npi,\nordering_practice_zip_code\nFROM extracts.#{condition};\n\n"
|
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+
transform_body = propositions_to_sql.queries.join("\n")
|
33
|
+
"#{transform_header}\n#{transform_body}\n;"
|
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|
+
end
|
35
|
+
|
36
|
+
def transform_qa_sql
|
37
|
+
transform_qa_header = "set search_path to datamarts; \nselect "
|
38
|
+
fields_to_sum= propositions_to_sql.sanitized_graph.vertices.select {|v| v != propositions_to_sql.table_name}
|
39
|
+
transform_body = fields_to_sum.map {|e| "sum(#{e}) #{e}" }.join("\n, ")
|
40
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+
transform_body_from ="from #{propositions_to_sql.table_name}"
|
41
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+
"#{transform_qa_header}\n#{transform_body}\n#{transform_body_from};"
|
42
|
+
end
|
43
|
+
|
44
|
+
end
|
45
|
+
|
46
|
+
|
47
|
+
if ARGV.empty?
|
48
|
+
puts "USAGE: #{$0} <CONDITION>"
|
49
|
+
exit
|
50
|
+
end
|
51
|
+
|
52
|
+
condition = ARGV[0]
|
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+
|
54
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+
|
55
|
+
propositions_path = File.expand_path("./"+condition+".txt", File.dirname(__FILE__))
|
56
|
+
|
57
|
+
subquery_gsubs = [
|
58
|
+
["prior history of", "update +table_name+ set +destination_vertex+=(SELECT count(*) FROM +table_name+ n1 WHERE n1.patient_id = +table_name+.patient_id AND n1.test_specimen_draw_date_dt <+table_name+.test_specimen_draw_date_dt AND +origin_vertex+=1)>0;"],
|
59
|
+
["equals", "update +table_name+ set +destination_vertex+= +origin_vertex+;"],
|
60
|
+
["order has","update +table_name+ set +destination_vertex+=(SELECT max(+origin_vertex+) FROM +table_name+ n1 WHERE n1.patient_id = +table_name+.patient_id AND n1.order_id = +table_name+.order_id );"]
|
61
|
+
]
|
62
|
+
|
63
|
+
root_name = "ai_ppdm_"+condition
|
64
|
+
args = {
|
65
|
+
propositions_path: propositions_path,
|
66
|
+
table_name: root_name,
|
67
|
+
subquery_gsubs: subquery_gsubs
|
68
|
+
}
|
69
|
+
|
70
|
+
propositions_to_sql = Cmap::PropositionsToSql.new(args)
|
71
|
+
|
72
|
+
ppdm_extract_code = PpdmVelmaCode.new(propositions_to_sql,condition)
|
73
|
+
|
74
|
+
puts "\n################################\nSQL - EXTRACT CREATE - #{root_name} - create.sql\n################################\n"
|
75
|
+
#puts ppdm_extract_code.extract_create_sql
|
76
|
+
ppdm_extract_code.save_to_file("create.sql",ppdm_extract_code.extract_create_sql)
|
77
|
+
|
78
|
+
puts "\n################################\nSQL - EXTRACT SELECT - #{root_name} - select.sql\n################################\n"
|
79
|
+
#puts ppdm_extract_code.extract_select_sql
|
80
|
+
ppdm_extract_code.save_to_file("select.sql",ppdm_extract_code.extract_select_sql)
|
81
|
+
|
82
|
+
|
83
|
+
puts "\n################################\nSQL - TRANSFORM - #{root_name} - #{root_name}.sql\n################################\n"
|
84
|
+
ppdm_extract_code.save_to_file("#{root_name}.sql",ppdm_extract_code.transform_sql)
|
85
|
+
#puts ppdm_extract_code.transform_sql
|
86
|
+
|
87
|
+
puts "\n################################\nSQL - TRANSFORM QA - #{root_name} - #{root_name}_qa.sql\n################################\n"
|
88
|
+
ppdm_extract_code.save_to_file("#{root_name}_qa.sql",ppdm_extract_code.transform_qa_sql)
|
89
|
+
#puts ppdm_extract_code.transform_qa_sql
|
90
|
+
|
91
|
+
#binding.pry
|
@@ -0,0 +1,43 @@
|
|
1
|
+
module Cmap; class EdgesToQueries
|
2
|
+
|
3
|
+
attr_reader :edges, :table_name, :subquery_expander
|
4
|
+
|
5
|
+
def initialize(edges, table_name, subquery_expander)
|
6
|
+
@edges = edges
|
7
|
+
@table_name = table_name
|
8
|
+
@subquery_expander = subquery_expander
|
9
|
+
end
|
10
|
+
|
11
|
+
def queries
|
12
|
+
add_columns_queries +
|
13
|
+
gsub_subqueries +
|
14
|
+
updates
|
15
|
+
.delete_if {|q| q.empty?}
|
16
|
+
end
|
17
|
+
|
18
|
+
private
|
19
|
+
|
20
|
+
def unique_edges
|
21
|
+
edges.uniq {|e| [e.destination_vertex, e.value]}
|
22
|
+
end
|
23
|
+
|
24
|
+
def add_columns_queries
|
25
|
+
unique_edges.map {|e| "alter table #{table_name} add column #{e.destination_vertex} int2;"}
|
26
|
+
end
|
27
|
+
|
28
|
+
def grouped_edges
|
29
|
+
unique_edges.group_by {|e| subquery_expander.update_query?(e)}
|
30
|
+
end
|
31
|
+
|
32
|
+
def gsub_subqueries
|
33
|
+
(grouped_edges[true] || []).map {|e| subquery_expander.query(e)}
|
34
|
+
end
|
35
|
+
|
36
|
+
def updates
|
37
|
+
u = (grouped_edges[false] || []).map {|e| "#{e.destination_vertex}=(#{e.value})::int"}.join(", ")
|
38
|
+
return [] if u.empty?
|
39
|
+
["update #{table_name} set #{u};"]
|
40
|
+
end
|
41
|
+
|
42
|
+
end; end
|
43
|
+
|
@@ -0,0 +1,44 @@
|
|
1
|
+
module Cmap; class GraphSanitizer
|
2
|
+
|
3
|
+
attr_reader :graph
|
4
|
+
|
5
|
+
def initialize(graph)
|
6
|
+
@graph = graph
|
7
|
+
@sanitized_vertex_lookup = {}
|
8
|
+
end
|
9
|
+
|
10
|
+
def sanitized_graph
|
11
|
+
DirectedGraph::Graph.new(sanitized_edges)
|
12
|
+
end
|
13
|
+
|
14
|
+
def edges_with_sanitized_vertices
|
15
|
+
graph.edges.map do |edge|
|
16
|
+
origin_vertex = sanitize_string(edge.origin_vertex)
|
17
|
+
destination_vertex = sanitize_string(edge.destination_vertex)
|
18
|
+
|
19
|
+
@sanitized_vertex_lookup[edge.origin_vertex] = origin_vertex
|
20
|
+
@sanitized_vertex_lookup[edge.destination_vertex] = destination_vertex
|
21
|
+
|
22
|
+
{origin_vertex: origin_vertex, destination_vertex: destination_vertex, value: edge.value}
|
23
|
+
end
|
24
|
+
end
|
25
|
+
|
26
|
+
def sanitize_edge_value(edge_args)
|
27
|
+
@sanitized_vertex_lookup.keys.sort.reverse.each do |original_vertex_name|
|
28
|
+
edge_args[:value].gsub!(original_vertex_name, @sanitized_vertex_lookup[original_vertex_name])
|
29
|
+
end
|
30
|
+
edge_args
|
31
|
+
end
|
32
|
+
|
33
|
+
def sanitized_edges
|
34
|
+
edges_with_sanitized_vertices.map do |edge_args|
|
35
|
+
DirectedGraph::Edge.new(sanitize_edge_value(edge_args))
|
36
|
+
end
|
37
|
+
end
|
38
|
+
|
39
|
+
def sanitize_string(string)
|
40
|
+
string.gsub(/[^0-9a-zA-Z]+/, '_').downcase
|
41
|
+
end
|
42
|
+
|
43
|
+
end; end
|
44
|
+
|
data/lib/cmap/graph_to_sql.rb
CHANGED
@@ -1,47 +1,32 @@
|
|
1
1
|
module Cmap; class GraphToSql
|
2
2
|
|
3
|
-
attr_reader :table_name, :graph, :
|
3
|
+
attr_reader :table_name, :graph, :subquery_gsubs
|
4
4
|
|
5
|
-
def initialize(table_name, graph,
|
5
|
+
def initialize(table_name, graph, subquery_gsubs = [])
|
6
6
|
@table_name = table_name
|
7
7
|
@graph = graph
|
8
|
-
@
|
9
|
-
@column_gsubs = column_gsubs
|
8
|
+
@subquery_gsubs = subquery_gsubs
|
10
9
|
end
|
11
10
|
|
12
11
|
def queries
|
13
|
-
|
14
|
-
memo.
|
12
|
+
sorted_grouped_edges.inject([]) do |memo, (_, edges)|
|
13
|
+
memo += (EdgesToQueries.new(edges, table_name, subquery_expander).queries)
|
15
14
|
memo
|
16
15
|
end
|
17
16
|
end
|
18
17
|
|
19
18
|
private
|
20
19
|
|
21
|
-
def
|
22
|
-
|
23
|
-
q = query(edge)
|
24
|
-
"alter table #{table_name} add column #{c} int2; update #{table_name} set #{c} = 1 where (#{q});"
|
20
|
+
def subquery_expander
|
21
|
+
SubqueryExpander.new(table_name: table_name, subquery_gsubs: subquery_gsubs)
|
25
22
|
end
|
26
23
|
|
27
|
-
def
|
28
|
-
|
29
|
-
column_gsubs.each do |gsub|
|
30
|
-
c = c.gsub(*gsub)
|
31
|
-
end
|
32
|
-
c
|
33
|
-
end
|
34
|
-
|
35
|
-
def query(edge)
|
36
|
-
q = edge.value
|
37
|
-
query_gsubs.each do |gsub|
|
38
|
-
q = q.gsub(*gsub)
|
39
|
-
end
|
40
|
-
q
|
24
|
+
def sorted_grouped_edges
|
25
|
+
Hash[grouped_edges.sort]
|
41
26
|
end
|
42
27
|
|
43
|
-
def
|
44
|
-
graph.
|
28
|
+
def grouped_edges
|
29
|
+
graph.edges.group_by {|e| graph.longest_path(table_name, e.destination_vertex).length}
|
45
30
|
end
|
46
31
|
|
47
32
|
end; end
|
@@ -12,17 +12,17 @@ module Cmap; class PropositionsToGraph
|
|
12
12
|
|
13
13
|
private
|
14
14
|
|
15
|
-
def propositions
|
16
|
-
csv_path = File.expand_path(propositions_path, File.dirname(__FILE__))
|
17
|
-
CSV.read(csv_path, { :col_sep => "\t", :quote_char => '"' })
|
18
|
-
end
|
19
|
-
|
20
15
|
def edges
|
21
16
|
@edges ||= propositions.inject([]) do |memo, e|
|
22
17
|
origin_vertex, value, destination_vertex = e
|
23
|
-
memo << DirectedGraph::Edge.new(origin_vertex, destination_vertex, value)
|
18
|
+
memo << DirectedGraph::Edge.new(origin_vertex: origin_vertex, destination_vertex: destination_vertex, value: value)
|
24
19
|
memo
|
25
20
|
end
|
26
21
|
end
|
27
22
|
|
23
|
+
def propositions
|
24
|
+
csv_path = File.expand_path(propositions_path, File.dirname(__FILE__))
|
25
|
+
CSV.read(csv_path, { :col_sep => "\t", :quote_char => '"' })
|
26
|
+
end
|
27
|
+
|
28
28
|
end; end
|
@@ -0,0 +1,32 @@
|
|
1
|
+
module Cmap; class PropositionsToSql
|
2
|
+
|
3
|
+
attr_reader :propositions_path, :table_name, :subquery_gsubs
|
4
|
+
|
5
|
+
def initialize(args)
|
6
|
+
@propositions_path = args.fetch(:propositions_path)
|
7
|
+
@table_name = args.fetch(:table_name)
|
8
|
+
@subquery_gsubs = args.fetch(:subquery_gsubs, [])
|
9
|
+
end
|
10
|
+
|
11
|
+
def queries
|
12
|
+
graph_to_sql.queries
|
13
|
+
end
|
14
|
+
|
15
|
+
def propositions_to_graph
|
16
|
+
PropositionsToGraph.new(propositions_path)
|
17
|
+
end
|
18
|
+
|
19
|
+
def raw_graph
|
20
|
+
propositions_to_graph.graph
|
21
|
+
end
|
22
|
+
|
23
|
+
def sanitized_graph
|
24
|
+
GraphSanitizer.new(raw_graph).sanitized_graph
|
25
|
+
end
|
26
|
+
|
27
|
+
def graph_to_sql
|
28
|
+
GraphToSql.new(table_name, sanitized_graph, subquery_gsubs)
|
29
|
+
end
|
30
|
+
|
31
|
+
end; end
|
32
|
+
|
@@ -0,0 +1,22 @@
|
|
1
|
+
module Cmap; class SubqueryExpander
|
2
|
+
|
3
|
+
attr_reader :table_name, :subquery_gsubs
|
4
|
+
|
5
|
+
def initialize(args)
|
6
|
+
@table_name = args.fetch(:table_name)
|
7
|
+
@subquery_gsubs = args.fetch(:subquery_gsubs, [])
|
8
|
+
end
|
9
|
+
|
10
|
+
def update_query?(edge)
|
11
|
+
edge.value != query(edge)
|
12
|
+
end
|
13
|
+
|
14
|
+
def query(edge)
|
15
|
+
r = edge.value
|
16
|
+
replacements = [["+table_name+", table_name], ["+destination_vertex+", edge.destination_vertex], ["+origin_vertex+", edge.origin_vertex]]
|
17
|
+
(subquery_gsubs + replacements).each {|gsub| r = r.gsub(*gsub)}
|
18
|
+
r
|
19
|
+
end
|
20
|
+
|
21
|
+
end; end
|
22
|
+
|
data/lib/cmap/version.rb
CHANGED
data/lib/cmap.rb
CHANGED
@@ -1,4 +1,4 @@
|
|
1
|
-
|
1
|
+
require_relative "./cmap/version"
|
2
2
|
|
3
3
|
require 'csv'
|
4
4
|
require 'pg'
|
@@ -6,8 +6,12 @@ require 'pry'
|
|
6
6
|
|
7
7
|
require 'directed_graph'
|
8
8
|
|
9
|
+
require_relative "./cmap/graph_sanitizer.rb"
|
10
|
+
require_relative "./cmap/subquery_expander.rb"
|
11
|
+
require_relative "./cmap/edges_to_queries.rb"
|
9
12
|
require_relative "./cmap/propositions_to_graph.rb"
|
10
13
|
require_relative "./cmap/graph_to_sql.rb"
|
14
|
+
require_relative "./cmap/propositions_to_sql.rb"
|
11
15
|
require_relative "./cmap/sql_runner.rb"
|
12
16
|
|
13
17
|
module Cmap
|
metadata
CHANGED
@@ -1,14 +1,14 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: cmap
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 0.
|
4
|
+
version: 0.3.0
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- MrPowers
|
8
8
|
autorequire:
|
9
9
|
bindir: exe
|
10
10
|
cert_chain: []
|
11
|
-
date: 2015-10-
|
11
|
+
date: 2015-10-26 00:00:00.000000000 Z
|
12
12
|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
|
name: bundler
|
@@ -80,34 +80,20 @@ dependencies:
|
|
80
80
|
- - ">="
|
81
81
|
- !ruby/object:Gem::Version
|
82
82
|
version: '0'
|
83
|
-
- !ruby/object:Gem::Dependency
|
84
|
-
name: simple-graph
|
85
|
-
requirement: !ruby/object:Gem::Requirement
|
86
|
-
requirements:
|
87
|
-
- - ">="
|
88
|
-
- !ruby/object:Gem::Version
|
89
|
-
version: '0'
|
90
|
-
type: :runtime
|
91
|
-
prerelease: false
|
92
|
-
version_requirements: !ruby/object:Gem::Requirement
|
93
|
-
requirements:
|
94
|
-
- - ">="
|
95
|
-
- !ruby/object:Gem::Version
|
96
|
-
version: '0'
|
97
83
|
- !ruby/object:Gem::Dependency
|
98
84
|
name: directed_graph
|
99
85
|
requirement: !ruby/object:Gem::Requirement
|
100
86
|
requirements:
|
101
|
-
- -
|
87
|
+
- - '='
|
102
88
|
- !ruby/object:Gem::Version
|
103
|
-
version:
|
89
|
+
version: 0.3.0
|
104
90
|
type: :runtime
|
105
91
|
prerelease: false
|
106
92
|
version_requirements: !ruby/object:Gem::Requirement
|
107
93
|
requirements:
|
108
|
-
- -
|
94
|
+
- - '='
|
109
95
|
- !ruby/object:Gem::Version
|
110
|
-
version:
|
96
|
+
version: 0.3.0
|
111
97
|
description: Converts cmap exports that follow strict conventions into postgreSQL
|
112
98
|
for data analysis
|
113
99
|
email:
|
@@ -126,10 +112,16 @@ files:
|
|
126
112
|
- bin/console
|
127
113
|
- bin/setup
|
128
114
|
- cmap.gemspec
|
115
|
+
- example/acr.txt
|
116
|
+
- example/cmap_to_sql.rb
|
129
117
|
- lib/cmap.rb
|
118
|
+
- lib/cmap/edges_to_queries.rb
|
119
|
+
- lib/cmap/graph_sanitizer.rb
|
130
120
|
- lib/cmap/graph_to_sql.rb
|
131
121
|
- lib/cmap/propositions_to_graph.rb
|
122
|
+
- lib/cmap/propositions_to_sql.rb
|
132
123
|
- lib/cmap/sql_runner.rb
|
124
|
+
- lib/cmap/subquery_expander.rb
|
133
125
|
- lib/cmap/version.rb
|
134
126
|
- pictures/.DS_Store
|
135
127
|
- pictures/cmap_example.png
|