cmap 0.2.0 → 0.3.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (13) hide show
  1. checksums.yaml +4 -4
  2. data/cmap.gemspec +1 -2
  3. data/example/acr.txt +32 -0
  4. data/example/cmap_to_sql.rb +91 -0
  5. data/lib/cmap/edges_to_queries.rb +43 -0
  6. data/lib/cmap/graph_sanitizer.rb +44 -0
  7. data/lib/cmap/graph_to_sql.rb +11 -26
  8. data/lib/cmap/propositions_to_graph.rb +6 -6
  9. data/lib/cmap/propositions_to_sql.rb +32 -0
  10. data/lib/cmap/subquery_expander.rb +22 -0
  11. data/lib/cmap/version.rb +1 -1
  12. data/lib/cmap.rb +5 -1
  13. metadata +12 -20
checksums.yaml CHANGED
@@ -1,7 +1,7 @@
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- data.tar.gz: 1e34a84f38dfdbc420c22600ccaaaea0893ba475
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+ metadata.gz: 48ee02def6c2ba51722af4bd490b39bcd310ce1e
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+ data.tar.gz: c65a0293ee805f17bbcf662f907f22538d064461
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  SHA512:
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- metadata.gz: 711553c586c488f6d58434cec963fcd55d0d2d5e37af4a08448ca7b69966feb377c46719b016d23fbe2d442cf7a5d5d7ea55bb5aa393edd924237f0cb4b0a56f
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+ metadata.gz: 6949e80f0d48124ebe8d570b26e3a53f8924d7a573442f6f1dcd1a50185bef93ab91ae396fa49ff9d8886d5a4cc71aac1a1fa66951ad9080857e259377304ffb
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+ data.tar.gz: e15dfa04a3323273bf83296c85b24d24b3fe5d0af05136c38b4aa7ac9a2837278d09cf41ebfa9ded52c8c0dc19f26669c856306dc164b91df6199dfed4b34e5c
data/cmap.gemspec CHANGED
@@ -25,6 +25,5 @@ Gem::Specification.new do |spec|
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  spec.add_dependency "pg", "0.18.3"
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  spec.add_dependency "pry"
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- spec.add_dependency "simple-graph"
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- spec.add_dependency "directed_graph"
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+ spec.add_dependency "directed_graph", '0.3.0'
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  end
data/example/acr.txt ADDED
@@ -0,0 +1,32 @@
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+ IGF-1 Result, Female CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Male = 1 AND test_result_num >157) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Male = 1 AND test_result_num >167) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Male = 1 AND test_result_num >184) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Male = 1 AND test_result_num >225) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Male = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Male = 1 AND test_result_num >292) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Male = 1 AND test_result_num >323) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Male = 1 AND test_result_num >362) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Male = 1 AND test_result_num >407) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Male = 1 AND test_result_num >454) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Male = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Male = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Male = 1 AND test_result_num >551) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Male = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Male = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Male = 1 AND test_result_num >521) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Male = 1 AND test_result_num >494) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Male = 1 AND test_result_num >463) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Male = 1 AND test_result_num >430) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Male = 1 AND test_result_num >355) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Male = 1 AND test_result_num >282) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Male = 1 AND test_result_num >233) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Male = 1 AND test_result_num >216) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Male = 1 AND test_result_num >200) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Male = 1 AND test_result_num >194) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Male = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Male = 1 AND test_result_num >192) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Male = 1 AND test_result_num >179) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Male = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Male = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Male
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+ ai_ppdm_acr test_result_name_stnd = 'IGF-I' IGF-1 Result
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+ IGF-1 Result, Has 253 ICD9 Code IGF-1 Result, Abnormal = 1 AND IGF-1 Result, Has 253 ICD9 Code = 1 Profile - Acromegarly - Patients With Abnormal IGF-1 Test and Acromegarly ICD9 Code
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+ IGF-1 Result, Has 253 ICD9 Code IGF-1 Result, Abnormal = 0 AND IGF-1 Result, Has 253 ICD9 Code = 0 Profile - Acromegarly - Patients With Not Abnormal IGF-1 Test and Other ICD9 Code
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+ IGF-1 Result, Abnormal IGF-1 Result, Abnormal = 1 AND IGF-1 Result, Has 253 ICD9 Code = 0 Profile - Acromegarly - Patients With Abnormal IGF-1 Test and Other ICD9 Code
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+ IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Hist IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Hist = 1 AND IGF-1 Result, Abnormal = 0 Profile - Acromegarly - Patients With Not Abnormal IGF-1 Test and Pituitary Gland Neoplasm ICD9 Code
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+ IGF-1 Result, Age Group CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Male = 1 AND test_result_num >157) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Male = 1 AND test_result_num >167) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Male = 1 AND test_result_num >184) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Male = 1 AND test_result_num >225) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Male = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Male = 1 AND test_result_num >292) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Male = 1 AND test_result_num >323) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Male = 1 AND test_result_num >362) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Male = 1 AND test_result_num >407) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Male = 1 AND test_result_num >454) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Male = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Male = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Male = 1 AND test_result_num >551) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Male = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Male = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Male = 1 AND test_result_num >521) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Male = 1 AND test_result_num >494) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Male = 1 AND test_result_num >463) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Male = 1 AND test_result_num >430) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Male = 1 AND test_result_num >355) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Male = 1 AND test_result_num >282) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Male = 1 AND test_result_num >233) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Male = 1 AND test_result_num >216) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Male = 1 AND test_result_num >200) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Male = 1 AND test_result_num >194) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Male = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Male = 1 AND test_result_num >192) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Male = 1 AND test_result_num >179) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Male = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Male = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Male
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+ Has Diag equals Profile - Acromegarly - Diagnosed Patients
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+ IGF-1 Result, Male CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Male = 1 AND test_result_num >157) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Male = 1 AND test_result_num >167) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Male = 1 AND test_result_num >184) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Male = 1 AND test_result_num >225) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Male = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Male = 1 AND test_result_num >292) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Male = 1 AND test_result_num >323) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Male = 1 AND test_result_num >362) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Male = 1 AND test_result_num >407) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Male = 1 AND test_result_num >454) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Male = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Male = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Male = 1 AND test_result_num >551) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Male = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Male = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Male = 1 AND test_result_num >521) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Male = 1 AND test_result_num >494) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Male = 1 AND test_result_num >463) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Male = 1 AND test_result_num >430) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Male = 1 AND test_result_num >355) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Male = 1 AND test_result_num >282) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Male = 1 AND test_result_num >233) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Male = 1 AND test_result_num >216) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Male = 1 AND test_result_num >200) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Male = 1 AND test_result_num >194) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Male = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Male = 1 AND test_result_num >192) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Male = 1 AND test_result_num >179) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Male = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Male = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Male
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+ IGF-1 Result, Abnormal IGF-1 Result, Abnormal = 0 AND IGF-1 Result, Has 253 ICD9 Code = 0 Profile - Acromegarly - Patients With Not Abnormal IGF-1 Test and Other ICD9 Code
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+ IGF-1 Result IGF-1 Result = 1 AND patient_gender = 'M' IGF-1 Result, Male
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+ IGF-1 Result CASE WHEN IGF-1 Result = 1 AND patient_age < 20 THEN patient_age WHEN IGF-1 Result = 1 AND patient_age BETWEEN 21 AND 25 THEN 21 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 26 AND 30 THEN 26 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 31 AND 35 THEN 31 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 36 AND 40 THEN 36 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 41 AND 45 THEN 41 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 46 AND 50 THEN 46 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 51 AND 55 THEN 51 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 56 AND 60 THEN 56 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 61 AND 65 THEN 61 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 66 AND 70 THEN 66 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 71 AND 75 THEN 71 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 76 AND 80 THEN 76 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 81 AND 85 THEN 81 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 86 AND 90 THEN 86 WHEN IGF-1 Result = 1 AND patient_age > 90 THEN 91 END IGF-1 Result, Age Group
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+ IGF-1 Result, Age Group CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Female = 1 AND test_result_num >126) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Female = 1 AND test_result_num >132) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Female = 1 AND test_result_num >145) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Female = 1 AND test_result_num >164) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Female = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Female = 1 AND test_result_num >214) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Female = 1 AND test_result_num >240) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Female = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Female = 1 AND test_result_num >305) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Female = 1 AND test_result_num >349) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Female = 1 AND test_result_num >400) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Female = 1 AND test_result_num >453) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Female = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Female = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Female = 1 AND test_result_num >552) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Female = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Female = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Female = 1 AND test_result_num >517) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Female = 1 AND test_result_num >486) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Female = 1 AND test_result_num >451) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Female = 1 AND test_result_num >416) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Female = 1 AND test_result_num >342) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Female = 1 AND test_result_num >270) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Female = 1 AND test_result_num >243) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Female = 1 AND test_result_num >227) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Female = 1 AND test_result_num >204) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Female = 1 AND test_result_num >195) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Female = 1 AND test_result_num >190) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Female = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Female = 1 AND test_result_num >169) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Female = 1 AND test_result_num >163) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Female = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Female = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Female = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Female = 1 AND test_result_num >178) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Female = 1 AND test_result_num >178) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Female
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+ IGF-1 Result, Male CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Female = 1 AND test_result_num >126) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Female = 1 AND test_result_num >132) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Female = 1 AND test_result_num >145) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Female = 1 AND test_result_num >164) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Female = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Female = 1 AND test_result_num >214) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Female = 1 AND test_result_num >240) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Female = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Female = 1 AND test_result_num >305) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Female = 1 AND test_result_num >349) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Female = 1 AND test_result_num >400) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Female = 1 AND test_result_num >453) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Female = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Female = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Female = 1 AND test_result_num >552) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Female = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Female = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Female = 1 AND test_result_num >517) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Female = 1 AND test_result_num >486) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Female = 1 AND test_result_num >451) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Female = 1 AND test_result_num >416) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Female = 1 AND test_result_num >342) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Female = 1 AND test_result_num >270) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Female = 1 AND test_result_num >243) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Female = 1 AND test_result_num >227) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Female = 1 AND test_result_num >204) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Female = 1 AND test_result_num >195) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Female = 1 AND test_result_num >190) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Female = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Female = 1 AND test_result_num >169) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Female = 1 AND test_result_num >163) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Female = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Female = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Female = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Female = 1 AND test_result_num >178) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Female = 1 AND test_result_num >178) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Female
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+ IGF-1 Result, Has 253 ICD9 Code IGF-1 Result, Abnormal = 1 AND IGF-1 Result, Has 253 ICD9 Code = 0 Profile - Acromegarly - Patients With Abnormal IGF-1 Test and Other ICD9 Code
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+ IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Prior (IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code = 1) OR (IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Prior = 1) IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Hist
17
+ IGF-1 Result, Age Group CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Male = 1 AND test_result_num >157) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Male = 1 AND test_result_num >167) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Male = 1 AND test_result_num >184) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Male = 1 AND test_result_num >225) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Male = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Male = 1 AND test_result_num >292) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Male = 1 AND test_result_num >323) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Male = 1 AND test_result_num >362) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Male = 1 AND test_result_num >407) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Male = 1 AND test_result_num >454) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Male = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Male = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Male = 1 AND test_result_num >551) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Male = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Male = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Male = 1 AND test_result_num >521) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Male = 1 AND test_result_num >494) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Male = 1 AND test_result_num >463) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Male = 1 AND test_result_num >430) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Male = 1 AND test_result_num >355) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Male = 1 AND test_result_num >282) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Male = 1 AND test_result_num >233) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Male = 1 AND test_result_num >216) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Male = 1 AND test_result_num >200) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Male = 1 AND test_result_num >194) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Male = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Male = 1 AND test_result_num >192) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Male = 1 AND test_result_num >179) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Male = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Male = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Male
18
+ IGF-1 Result case when IGF-1 Result = 1 AND '227.3' in (icd9_primary,icd9_secondary,icd9_third,icd9_fourth) then 1 else 0 end IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code
19
+ IGF-1 Result, Female CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Female = 1 AND test_result_num >126) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Female = 1 AND test_result_num >132) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Female = 1 AND test_result_num >145) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Female = 1 AND test_result_num >164) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Female = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Female = 1 AND test_result_num >214) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Female = 1 AND test_result_num >240) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Female = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Female = 1 AND test_result_num >305) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Female = 1 AND test_result_num >349) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Female = 1 AND test_result_num >400) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Female = 1 AND test_result_num >453) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Female = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Female = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Female = 1 AND test_result_num >552) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Female = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Female = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Female = 1 AND test_result_num >517) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Female = 1 AND test_result_num >486) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Female = 1 AND test_result_num >451) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Female = 1 AND test_result_num >416) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Female = 1 AND test_result_num >342) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Female = 1 AND test_result_num >270) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Female = 1 AND test_result_num >243) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Female = 1 AND test_result_num >227) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Female = 1 AND test_result_num >204) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Female = 1 AND test_result_num >195) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Female = 1 AND test_result_num >190) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Female = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Female = 1 AND test_result_num >169) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Female = 1 AND test_result_num >163) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Female = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Female = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Female = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Female = 1 AND test_result_num >178) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Female = 1 AND test_result_num >178) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Female
20
+ IGF-1 Result, Abn High, Male IGF-1 Result, Abn High, Male = 1 OR IGF-1 Result, Abn High, Female = 1 IGF-1 Result, Abnormal
21
+ IGF-1 Result, Has 253 ICD9 Code IGF-1 Result, Has 253 ICD9 Code = 1 OR IGF-1 Result, Abnormal = 1 Has Diag
22
+ IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code prior history of IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Prior
23
+ IGF-1 Result, Female CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Male = 1 AND test_result_num >157) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Male = 1 AND test_result_num >167) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Male = 1 AND test_result_num >184) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Male = 1 AND test_result_num >225) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Male = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Male = 1 AND test_result_num >292) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Male = 1 AND test_result_num >323) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Male = 1 AND test_result_num >362) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Male = 1 AND test_result_num >407) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Male = 1 AND test_result_num >454) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Male = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Male = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Male = 1 AND test_result_num >551) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Male = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Male = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Male = 1 AND test_result_num >521) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Male = 1 AND test_result_num >494) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Male = 1 AND test_result_num >463) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Male = 1 AND test_result_num >430) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Male = 1 AND test_result_num >355) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Male = 1 AND test_result_num >282) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Male = 1 AND test_result_num >233) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Male = 1 AND test_result_num >216) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Male = 1 AND test_result_num >200) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Male = 1 AND test_result_num >194) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Male = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Male = 1 AND test_result_num >192) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Male = 1 AND test_result_num >179) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Male = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Male = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Male
24
+ IGF-1 Result, Abn High, Female IGF-1 Result, Abn High, Male = 1 OR IGF-1 Result, Abn High, Female = 1 IGF-1 Result, Abnormal
25
+ IGF-1 Result, Abnormal IGF-1 Result, Abnormal = 1 AND IGF-1 Result, Has 253 ICD9 Code = 1 Profile - Acromegarly - Patients With Abnormal IGF-1 Test and Acromegarly ICD9 Code
26
+ IGF-1 Result IGF-1 Result = 1 AND patient_gender = 'F' IGF-1 Result, Female
27
+ IGF-1 Result, Male CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Male = 1 AND test_result_num >157) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Male = 1 AND test_result_num >167) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Male = 1 AND test_result_num >184) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Male = 1 AND test_result_num >225) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Male = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Male = 1 AND test_result_num >292) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Male = 1 AND test_result_num >323) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Male = 1 AND test_result_num >362) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Male = 1 AND test_result_num >407) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Male = 1 AND test_result_num >454) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Male = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Male = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Male = 1 AND test_result_num >551) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Male = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Male = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Male = 1 AND test_result_num >521) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Male = 1 AND test_result_num >494) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Male = 1 AND test_result_num >463) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Male = 1 AND test_result_num >430) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Male = 1 AND test_result_num >355) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Male = 1 AND test_result_num >282) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Male = 1 AND test_result_num >233) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Male = 1 AND test_result_num >216) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Male = 1 AND test_result_num >200) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Male = 1 AND test_result_num >194) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Male = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Male = 1 AND test_result_num >192) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Male = 1 AND test_result_num >179) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Male = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Male = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Male
28
+ IGF-1 Result, Abnormal IGF-1 Result, Has 253 ICD9 Code = 1 OR IGF-1 Result, Abnormal = 1 Has Diag
29
+ IGF-1 Result case when IGF-1 Result = 1 AND '253.0' in (icd9_primary,icd9_secondary,icd9_third,icd9_fourth) then 1 else 0 end IGF-1 Result, Has 253 ICD9 Code
30
+ IGF-1 Result, Has 253 ICD9 Code IGF-1 Result, Abnormal = 0 AND IGF-1 Result, Has 253 ICD9 Code = 1 Profile - Acromegarly - Patients With Not Abnormal IGF-1 Test and Acromegarly ICD9 Code
31
+ IGF-1 Result, Abnormal IGF-1 Result, Abnormal = 0 AND IGF-1 Result, Has 253 ICD9 Code = 1 Profile - Acromegarly - Patients With Not Abnormal IGF-1 Test and Acromegarly ICD9 Code
32
+ IGF-1 Result, Abnormal IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Hist = 1 AND IGF-1 Result, Abnormal = 0 Profile - Acromegarly - Patients With Not Abnormal IGF-1 Test and Pituitary Gland Neoplasm ICD9 Code
data/example/cmap_to_sql.rb ADDED
@@ -0,0 +1,91 @@
1
+ require '/Users/malarcon/medivo/cmap/lib/cmap.rb'
2
+ require 'pry'
3
+
4
+ class PpdmVelmaCode
5
+ attr_reader :propositions_to_sql,:condition
6
+
7
+ def initialize(propositions_to_sql,condition)
8
+ @propositions_to_sql = propositions_to_sql
9
+ @condition = condition
10
+ end
11
+
12
+ def save_to_file(filename,what_to_save)
13
+ output = File.open( "#{filename}","w" )
14
+ output << what_to_save
15
+ output.close
16
+ end
17
+
18
+ def extract_create_sql
19
+ "create table extracts.#{condition} (\n lab_result_id integer,\n input_filename varchar(255),\n patient_id varchar(255),\n patient_gender varchar(255),\n patient_date_of_birth varchar(255),\n patient_state varchar(255),\n diagnosis_codes varchar(255),\n test_result_name varchar(255),\n test_result_value varchar(255),\n test_result_abnormal_flag varchar(255),\n ordering_provider_npi_number varchar(255),\n ordering_provider_first_name varchar(255),\n ordering_provider_last_name varchar(255),\n ordering_practice_lab_account_number varchar(255),\n ordering_practice_address_line_1 varchar(255),\n ordering_practice_zip_code varchar(255),\n\n test_result_name_stnd varchar(128),\n test_result_value_numeric_stnd numeric(23,5),\n test_observation_reported_date varchar(255),\n test_specimen_draw_date varchar(255),\n test_specimen_receipt_date varchar(255),\n diag_1 varchar(16),\n diag_2 varchar(16),\n diag_3 varchar(16),\n diag_4 varchar(16),\n account_type varchar(255),\n provider_type varchar(255)\n);"
20
+ end
21
+
22
+ def extract_select_sql
23
+ extract_select = "select\n -- lochlomond fields\n lab_result_id,\n input_filename,\n token4 as patient_id,\n patient_gender,\n patient_date_of_birth,\n patient_state,\n diagnosis_codes,\n test_result_name,\n test_result_value,\n test_result_abnormal_flag,\n ordering_provider_npi_number,\n ordering_provider_first_name,\n ordering_provider_last_name,\n ordering_practice_lab_account_number,\n ordering_practice_address_line_1,\n ordering_practice_zip_code,\n\n -- standardized fields\n test_result_name_stnd,\n test_result_value_numeric_stnd,\n test_observation_reported_date,\n test_specimen_draw_date,\n test_specimen_receipt_date,\n diag_1,\n diag_2,\n diag_3,\n diag_4,\n account_type,\n provider_type\nfrom\n analytics.lab_result\nwhere"
24
+ results_of_interest = propositions_to_sql.sanitized_graph.children(propositions_to_sql.table_name)
25
+ vertices_of_results = propositions_to_sql.sanitized_graph.edges.select{|e| results_of_interest.include? e.destination_vertex}
26
+ fields = vertices_of_results.map {|e| "#{e.value}" }.join(" or ")
27
+ "#{extract_select} #{fields};"
28
+ end
29
+
30
+ def transform_sql
31
+ transform_header = "set search_path to datamarts;\nDROP TABLE IF EXISTS ai_ppdm_acr;\n\nCREATE TABLE ai_ppdm_acr\n\nAS\n\nSELECT ROW_NUMBER() OVER (ORDER BY patient_id,test_observation_reported_date,lab_result_id) AS record_number,\nDENSE_RANK() OVER (PARTITION BY patient_id ORDER BY test_observation_reported_date ASC,test_result_name_stnd,lab_result_id) AS record_number_asc,\nDENSE_RANK() OVER (PARTITION BY patient_id ORDER BY test_observation_reported_date DESC,test_result_name_stnd,lab_result_id) AS record_number_desc,\nlab_result_id,\ninput_filename,\npatient_id,\nmd5(test_observation_reported_date||patient_id) patient_date_id,\npatient_gender,\npatient_date_of_birth as patient_birth_year,\nCASE WHEN left(test_observation_reported_date,4) = '' then null\nELSE left(test_observation_reported_date,4)::numeric - patient_date_of_birth::numeric END as patient_age,\npatient_state,\ntest_result_name_stnd,\ntest_result_name,\nCASE WHEN test_result_value_numeric_stnd is null and test_result_value like '%<%' or test_result_value like '%>%' then replace(case WHEN test_result_value ~* '< ?[0-9]+ ?not detected' then '0' ELSE regexp_substr(test_result_value,'[0-9]+(\.[0-9]+)? ?') end,',','') *1.00\n WHEN test_result_value_numeric_stnd is null and test_result_value like '%E6' then replace(test_result_value,'E6','')*1000000.00\n WHEN test_result_value_numeric_stnd is null and test_result_value like '%E5' then replace(test_result_value,'E5','')*100000.00\n WHEN test_result_value_numeric_stnd is null and test_result_value like '%E4' then replace(test_result_value,'E4','')*10000.00\n WHEN test_result_value_numeric_stnd is null and test_result_value ~* 'not detected' then 0.00\n WHEN test_result_value_numeric_stnd is null and test_result_value ~* 'detected' then 1.00\nELSE test_result_value_numeric_stnd end test_result_num,\ntest_result_value,\ntest_result_abnormal_flag as test_abnorm_flag,\nTO_DATE(CASE WHEN test_observation_reported_date = '' THEN test_specimen_receipt_date ELSE test_observation_reported_date END,'YYYYMMDD') test_observation_reported_date_dt,\nLEFT (CASE WHEN test_observation_reported_date = '' THEN test_specimen_receipt_date ELSE test_observation_reported_date END,6)*1 test_observation_reported_date_yyyymm,\nTO_DATE(test_specimen_draw_date,'YYYYMMDD') test_specimen_draw_date_dt,\nmd5(coalesce(ordering_provider_npi_number,'')|| coalesce(ordering_provider_first_name,'')||coalesce(ordering_provider_last_name,'')) provider_id,\nordering_practice_lab_account_number practice_id,\nCASE\n WHEN lower(account_type) IN ('other','jail','military','n/a',' ','deleted account') THEN 'Non-Reference'\n WHEN account_type is null THEN 'Non-Reference'\n WHEN lower(account_type) IN ('lab') THEN 'Reference'\n WHEN lower(account_type) IN ('foreign') THEN 'Non-USA'\n ELSE 'UNMAPPED' ||account_type\n END account_type_val,\nprovider_type,\ndiag_1 as icd9_primary,\ndiag_2 as icd9_secondary,\ndiag_3 as icd9_third,\ndiag_4 as icd9_fourth,\nordering_practice_address_line_1 IS NOT NULL has_practice_info,\n((ordering_provider_first_name IS NOT NULL AND ordering_provider_last_name IS NOT NULL) OR ordering_provider_npi_number IS NOT NULL) has_provider_info,\nordering_provider_npi_number <> '' has_npi,\nordering_practice_zip_code\nFROM extracts.#{condition};\n\n"
32
+ transform_body = propositions_to_sql.queries.join("\n")
33
+ "#{transform_header}\n#{transform_body}\n;"
34
+ end
35
+
36
+ def transform_qa_sql
37
+ transform_qa_header = "set search_path to datamarts; \nselect "
38
+ fields_to_sum= propositions_to_sql.sanitized_graph.vertices.select {|v| v != propositions_to_sql.table_name}
39
+ transform_body = fields_to_sum.map {|e| "sum(#{e}) #{e}" }.join("\n, ")
40
+ transform_body_from ="from #{propositions_to_sql.table_name}"
41
+ "#{transform_qa_header}\n#{transform_body}\n#{transform_body_from};"
42
+ end
43
+
44
+ end
45
+
46
+
47
+ if ARGV.empty?
48
+ puts "USAGE: #{$0} <CONDITION>"
49
+ exit
50
+ end
51
+
52
+ condition = ARGV[0]
53
+
54
+
55
+ propositions_path = File.expand_path("./"+condition+".txt", File.dirname(__FILE__))
56
+
57
+ subquery_gsubs = [
58
+ ["prior history of", "update +table_name+ set +destination_vertex+=(SELECT count(*) FROM +table_name+ n1 WHERE n1.patient_id = +table_name+.patient_id AND n1.test_specimen_draw_date_dt <+table_name+.test_specimen_draw_date_dt AND +origin_vertex+=1)>0;"],
59
+ ["equals", "update +table_name+ set +destination_vertex+= +origin_vertex+;"],
60
+ ["order has","update +table_name+ set +destination_vertex+=(SELECT max(+origin_vertex+) FROM +table_name+ n1 WHERE n1.patient_id = +table_name+.patient_id AND n1.order_id = +table_name+.order_id );"]
61
+ ]
62
+
63
+ root_name = "ai_ppdm_"+condition
64
+ args = {
65
+ propositions_path: propositions_path,
66
+ table_name: root_name,
67
+ subquery_gsubs: subquery_gsubs
68
+ }
69
+
70
+ propositions_to_sql = Cmap::PropositionsToSql.new(args)
71
+
72
+ ppdm_extract_code = PpdmVelmaCode.new(propositions_to_sql,condition)
73
+
74
+ puts "\n################################\nSQL - EXTRACT CREATE - #{root_name} - create.sql\n################################\n"
75
+ #puts ppdm_extract_code.extract_create_sql
76
+ ppdm_extract_code.save_to_file("create.sql",ppdm_extract_code.extract_create_sql)
77
+
78
+ puts "\n################################\nSQL - EXTRACT SELECT - #{root_name} - select.sql\n################################\n"
79
+ #puts ppdm_extract_code.extract_select_sql
80
+ ppdm_extract_code.save_to_file("select.sql",ppdm_extract_code.extract_select_sql)
81
+
82
+
83
+ puts "\n################################\nSQL - TRANSFORM - #{root_name} - #{root_name}.sql\n################################\n"
84
+ ppdm_extract_code.save_to_file("#{root_name}.sql",ppdm_extract_code.transform_sql)
85
+ #puts ppdm_extract_code.transform_sql
86
+
87
+ puts "\n################################\nSQL - TRANSFORM QA - #{root_name} - #{root_name}_qa.sql\n################################\n"
88
+ ppdm_extract_code.save_to_file("#{root_name}_qa.sql",ppdm_extract_code.transform_qa_sql)
89
+ #puts ppdm_extract_code.transform_qa_sql
90
+
91
+ #binding.pry
data/lib/cmap/edges_to_queries.rb ADDED
@@ -0,0 +1,43 @@
1
+ module Cmap; class EdgesToQueries
2
+
3
+ attr_reader :edges, :table_name, :subquery_expander
4
+
5
+ def initialize(edges, table_name, subquery_expander)
6
+ @edges = edges
7
+ @table_name = table_name
8
+ @subquery_expander = subquery_expander
9
+ end
10
+
11
+ def queries
12
+ add_columns_queries +
13
+ gsub_subqueries +
14
+ updates
15
+ .delete_if {|q| q.empty?}
16
+ end
17
+
18
+ private
19
+
20
+ def unique_edges
21
+ edges.uniq {|e| [e.destination_vertex, e.value]}
22
+ end
23
+
24
+ def add_columns_queries
25
+ unique_edges.map {|e| "alter table #{table_name} add column #{e.destination_vertex} int2;"}
26
+ end
27
+
28
+ def grouped_edges
29
+ unique_edges.group_by {|e| subquery_expander.update_query?(e)}
30
+ end
31
+
32
+ def gsub_subqueries
33
+ (grouped_edges[true] || []).map {|e| subquery_expander.query(e)}
34
+ end
35
+
36
+ def updates
37
+ u = (grouped_edges[false] || []).map {|e| "#{e.destination_vertex}=(#{e.value})::int"}.join(", ")
38
+ return [] if u.empty?
39
+ ["update #{table_name} set #{u};"]
40
+ end
41
+
42
+ end; end
43
+
data/lib/cmap/graph_sanitizer.rb ADDED
@@ -0,0 +1,44 @@
1
+ module Cmap; class GraphSanitizer
2
+
3
+ attr_reader :graph
4
+
5
+ def initialize(graph)
6
+ @graph = graph
7
+ @sanitized_vertex_lookup = {}
8
+ end
9
+
10
+ def sanitized_graph
11
+ DirectedGraph::Graph.new(sanitized_edges)
12
+ end
13
+
14
+ def edges_with_sanitized_vertices
15
+ graph.edges.map do |edge|
16
+ origin_vertex = sanitize_string(edge.origin_vertex)
17
+ destination_vertex = sanitize_string(edge.destination_vertex)
18
+
19
+ @sanitized_vertex_lookup[edge.origin_vertex] = origin_vertex
20
+ @sanitized_vertex_lookup[edge.destination_vertex] = destination_vertex
21
+
22
+ {origin_vertex: origin_vertex, destination_vertex: destination_vertex, value: edge.value}
23
+ end
24
+ end
25
+
26
+ def sanitize_edge_value(edge_args)
27
+ @sanitized_vertex_lookup.keys.sort.reverse.each do |original_vertex_name|
28
+ edge_args[:value].gsub!(original_vertex_name, @sanitized_vertex_lookup[original_vertex_name])
29
+ end
30
+ edge_args
31
+ end
32
+
33
+ def sanitized_edges
34
+ edges_with_sanitized_vertices.map do |edge_args|
35
+ DirectedGraph::Edge.new(sanitize_edge_value(edge_args))
36
+ end
37
+ end
38
+
39
+ def sanitize_string(string)
40
+ string.gsub(/[^0-9a-zA-Z]+/, '_').downcase
41
+ end
42
+
43
+ end; end
44
+
data/lib/cmap/graph_to_sql.rb CHANGED
@@ -1,47 +1,32 @@
1
1
  module Cmap; class GraphToSql
2
2
 
3
- attr_reader :table_name, :graph, :query_gsubs, :column_gsubs
3
+ attr_reader :table_name, :graph, :subquery_gsubs
4
4
 
5
- def initialize(table_name, graph, query_gsubs = [], column_gsubs = [])
5
+ def initialize(table_name, graph, subquery_gsubs = [])
6
6
  @table_name = table_name
7
7
  @graph = graph
8
- @query_gsubs = query_gsubs
9
- @column_gsubs = column_gsubs
8
+ @subquery_gsubs = subquery_gsubs
10
9
  end
11
10
 
12
11
  def queries
13
- edges.inject([]) do |memo, edge|
14
- memo.push(edge_to_query(edge))
12
+ sorted_grouped_edges.inject([]) do |memo, (_, edges)|
13
+ memo += (EdgesToQueries.new(edges, table_name, subquery_expander).queries)
15
14
  memo
16
15
  end
17
16
  end
18
17
 
19
18
  private
20
19
 
21
- def edge_to_query(edge)
22
- c = column(edge)
23
- q = query(edge)
24
- "alter table #{table_name} add column #{c} int2; update #{table_name} set #{c} = 1 where (#{q});"
20
+ def subquery_expander
21
+ SubqueryExpander.new(table_name: table_name, subquery_gsubs: subquery_gsubs)
25
22
  end
26
23
 
27
- def column(edge)
28
- c = edge.destination_vertex
29
- column_gsubs.each do |gsub|
30
- c = c.gsub(*gsub)
31
- end
32
- c
33
- end
34
-
35
- def query(edge)
36
- q = edge.value
37
- query_gsubs.each do |gsub|
38
- q = q.gsub(*gsub)
39
- end
40
- q
24
+ def sorted_grouped_edges
25
+ Hash[grouped_edges.sort]
41
26
  end
42
27
 
43
- def edges
44
- graph.ordered_edges.uniq {|e| [e.destination_vertex, e.value]}
28
+ def grouped_edges
29
+ graph.edges.group_by {|e| graph.longest_path(table_name, e.destination_vertex).length}
45
30
  end
46
31
 
47
32
  end; end
data/lib/cmap/propositions_to_graph.rb CHANGED
@@ -12,17 +12,17 @@ module Cmap; class PropositionsToGraph
12
12
 
13
13
  private
14
14
 
15
- def propositions
16
- csv_path = File.expand_path(propositions_path, File.dirname(__FILE__))
17
- CSV.read(csv_path, { :col_sep => "\t", :quote_char => '"' })
18
- end
19
-
20
15
  def edges
21
16
  @edges ||= propositions.inject([]) do |memo, e|
22
17
  origin_vertex, value, destination_vertex = e
23
- memo << DirectedGraph::Edge.new(origin_vertex, destination_vertex, value)
18
+ memo << DirectedGraph::Edge.new(origin_vertex: origin_vertex, destination_vertex: destination_vertex, value: value)
24
19
  memo
25
20
  end
26
21
  end
27
22
 
23
+ def propositions
24
+ csv_path = File.expand_path(propositions_path, File.dirname(__FILE__))
25
+ CSV.read(csv_path, { :col_sep => "\t", :quote_char => '"' })
26
+ end
27
+
28
28
  end; end
data/lib/cmap/propositions_to_sql.rb ADDED
@@ -0,0 +1,32 @@
1
+ module Cmap; class PropositionsToSql
2
+
3
+ attr_reader :propositions_path, :table_name, :subquery_gsubs
4
+
5
+ def initialize(args)
6
+ @propositions_path = args.fetch(:propositions_path)
7
+ @table_name = args.fetch(:table_name)
8
+ @subquery_gsubs = args.fetch(:subquery_gsubs, [])
9
+ end
10
+
11
+ def queries
12
+ graph_to_sql.queries
13
+ end
14
+
15
+ def propositions_to_graph
16
+ PropositionsToGraph.new(propositions_path)
17
+ end
18
+
19
+ def raw_graph
20
+ propositions_to_graph.graph
21
+ end
22
+
23
+ def sanitized_graph
24
+ GraphSanitizer.new(raw_graph).sanitized_graph
25
+ end
26
+
27
+ def graph_to_sql
28
+ GraphToSql.new(table_name, sanitized_graph, subquery_gsubs)
29
+ end
30
+
31
+ end; end
32
+
data/lib/cmap/subquery_expander.rb ADDED
@@ -0,0 +1,22 @@
1
+ module Cmap; class SubqueryExpander
2
+
3
+ attr_reader :table_name, :subquery_gsubs
4
+
5
+ def initialize(args)
6
+ @table_name = args.fetch(:table_name)
7
+ @subquery_gsubs = args.fetch(:subquery_gsubs, [])
8
+ end
9
+
10
+ def update_query?(edge)
11
+ edge.value != query(edge)
12
+ end
13
+
14
+ def query(edge)
15
+ r = edge.value
16
+ replacements = [["+table_name+", table_name], ["+destination_vertex+", edge.destination_vertex], ["+origin_vertex+", edge.origin_vertex]]
17
+ (subquery_gsubs + replacements).each {|gsub| r = r.gsub(*gsub)}
18
+ r
19
+ end
20
+
21
+ end; end
22
+
data/lib/cmap/version.rb CHANGED
@@ -1,3 +1,3 @@
1
1
  module Cmap
2
- VERSION = "0.2.0"
2
+ VERSION = "0.3.0"
3
3
  end
data/lib/cmap.rb CHANGED
@@ -1,4 +1,4 @@
1
- require "cmap/version"
1
+ require_relative "./cmap/version"
2
2
 
3
3
  require 'csv'
4
4
  require 'pg'
@@ -6,8 +6,12 @@ require 'pry'
6
6
 
7
7
  require 'directed_graph'
8
8
 
9
+ require_relative "./cmap/graph_sanitizer.rb"
10
+ require_relative "./cmap/subquery_expander.rb"
11
+ require_relative "./cmap/edges_to_queries.rb"
9
12
  require_relative "./cmap/propositions_to_graph.rb"
10
13
  require_relative "./cmap/graph_to_sql.rb"
14
+ require_relative "./cmap/propositions_to_sql.rb"
11
15
  require_relative "./cmap/sql_runner.rb"
12
16
 
13
17
  module Cmap
metadata CHANGED
@@ -1,14 +1,14 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: cmap
3
3
  version: !ruby/object:Gem::Version
4
- version: 0.2.0
4
+ version: 0.3.0
5
5
  platform: ruby
6
6
  authors:
7
7
  - MrPowers
8
8
  autorequire:
9
9
  bindir: exe
10
10
  cert_chain: []
11
- date: 2015-10-06 00:00:00.000000000 Z
11
+ date: 2015-10-26 00:00:00.000000000 Z
12
12
  dependencies:
13
13
  - !ruby/object:Gem::Dependency
14
14
  name: bundler
@@ -80,34 +80,20 @@ dependencies:
80
80
  - - ">="
81
81
  - !ruby/object:Gem::Version
82
82
  version: '0'
83
- - !ruby/object:Gem::Dependency
84
- name: simple-graph
85
- requirement: !ruby/object:Gem::Requirement
86
- requirements:
87
- - - ">="
88
- - !ruby/object:Gem::Version
89
- version: '0'
90
- type: :runtime
91
- prerelease: false
92
- version_requirements: !ruby/object:Gem::Requirement
93
- requirements:
94
- - - ">="
95
- - !ruby/object:Gem::Version
96
- version: '0'
97
83
  - !ruby/object:Gem::Dependency
98
84
  name: directed_graph
99
85
  requirement: !ruby/object:Gem::Requirement
100
86
  requirements:
101
- - - ">="
87
+ - - '='
102
88
  - !ruby/object:Gem::Version
103
- version: '0'
89
+ version: 0.3.0
104
90
  type: :runtime
105
91
  prerelease: false
106
92
  version_requirements: !ruby/object:Gem::Requirement
107
93
  requirements:
108
- - - ">="
94
+ - - '='
109
95
  - !ruby/object:Gem::Version
110
- version: '0'
96
+ version: 0.3.0
111
97
  description: Converts cmap exports that follow strict conventions into postgreSQL
112
98
  for data analysis
113
99
  email:
@@ -126,10 +112,16 @@ files:
126
112
  - bin/console
127
113
  - bin/setup
128
114
  - cmap.gemspec
115
+ - example/acr.txt
116
+ - example/cmap_to_sql.rb
129
117
  - lib/cmap.rb
118
+ - lib/cmap/edges_to_queries.rb
119
+ - lib/cmap/graph_sanitizer.rb
130
120
  - lib/cmap/graph_to_sql.rb
131
121
  - lib/cmap/propositions_to_graph.rb
122
+ - lib/cmap/propositions_to_sql.rb
132
123
  - lib/cmap/sql_runner.rb
124
+ - lib/cmap/subquery_expander.rb
133
125
  - lib/cmap/version.rb
134
126
  - pictures/.DS_Store
135
127
  - pictures/cmap_example.png