cmap 0.2.0 → 0.3.0

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Files changed (13) hide show
  1. checksums.yaml +4 -4
  2. data/cmap.gemspec +1 -2
  3. data/example/acr.txt +32 -0
  4. data/example/cmap_to_sql.rb +91 -0
  5. data/lib/cmap/edges_to_queries.rb +43 -0
  6. data/lib/cmap/graph_sanitizer.rb +44 -0
  7. data/lib/cmap/graph_to_sql.rb +11 -26
  8. data/lib/cmap/propositions_to_graph.rb +6 -6
  9. data/lib/cmap/propositions_to_sql.rb +32 -0
  10. data/lib/cmap/subquery_expander.rb +22 -0
  11. data/lib/cmap/version.rb +1 -1
  12. data/lib/cmap.rb +5 -1
  13. metadata +12 -20
checksums.yaml CHANGED
@@ -1,7 +1,7 @@
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  SHA1:
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- metadata.gz: 8e708efa17e0c09e3dc56930c3a9e954af117ab1
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- data.tar.gz: 1e34a84f38dfdbc420c22600ccaaaea0893ba475
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+ metadata.gz: 48ee02def6c2ba51722af4bd490b39bcd310ce1e
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+ data.tar.gz: c65a0293ee805f17bbcf662f907f22538d064461
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  SHA512:
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- metadata.gz: 711553c586c488f6d58434cec963fcd55d0d2d5e37af4a08448ca7b69966feb377c46719b016d23fbe2d442cf7a5d5d7ea55bb5aa393edd924237f0cb4b0a56f
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- data.tar.gz: 723e351eb971b4f0ca369e218e71c5d53fe7f42dae8509c82461f8ebfabb5a7b9ca0231277abff16b9bfe59af7474b7128bc31e29da5d0d0dc78a8875d1b2eeb
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+ metadata.gz: 6949e80f0d48124ebe8d570b26e3a53f8924d7a573442f6f1dcd1a50185bef93ab91ae396fa49ff9d8886d5a4cc71aac1a1fa66951ad9080857e259377304ffb
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+ data.tar.gz: e15dfa04a3323273bf83296c85b24d24b3fe5d0af05136c38b4aa7ac9a2837278d09cf41ebfa9ded52c8c0dc19f26669c856306dc164b91df6199dfed4b34e5c
data/cmap.gemspec CHANGED
@@ -25,6 +25,5 @@ Gem::Specification.new do |spec|
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  spec.add_dependency "pg", "0.18.3"
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  spec.add_dependency "pry"
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- spec.add_dependency "simple-graph"
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- spec.add_dependency "directed_graph"
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+ spec.add_dependency "directed_graph", '0.3.0'
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  end
data/example/acr.txt ADDED
@@ -0,0 +1,32 @@
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+ IGF-1 Result, Female CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Male = 1 AND test_result_num >157) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Male = 1 AND test_result_num >167) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Male = 1 AND test_result_num >184) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Male = 1 AND test_result_num >225) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Male = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Male = 1 AND test_result_num >292) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Male = 1 AND test_result_num >323) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Male = 1 AND test_result_num >362) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Male = 1 AND test_result_num >407) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Male = 1 AND test_result_num >454) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Male = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Male = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Male = 1 AND test_result_num >551) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Male = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Male = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Male = 1 AND test_result_num >521) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Male = 1 AND test_result_num >494) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Male = 1 AND test_result_num >463) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Male = 1 AND test_result_num >430) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Male = 1 AND test_result_num >355) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Male = 1 AND test_result_num >282) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Male = 1 AND test_result_num >233) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Male = 1 AND test_result_num >216) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Male = 1 AND test_result_num >200) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Male = 1 AND test_result_num >194) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Male = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Male = 1 AND test_result_num >192) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Male = 1 AND test_result_num >179) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Male = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Male = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Male
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+ ai_ppdm_acr test_result_name_stnd = 'IGF-I' IGF-1 Result
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+ IGF-1 Result, Has 253 ICD9 Code IGF-1 Result, Abnormal = 1 AND IGF-1 Result, Has 253 ICD9 Code = 1 Profile - Acromegarly - Patients With Abnormal IGF-1 Test and Acromegarly ICD9 Code
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+ IGF-1 Result, Has 253 ICD9 Code IGF-1 Result, Abnormal = 0 AND IGF-1 Result, Has 253 ICD9 Code = 0 Profile - Acromegarly - Patients With Not Abnormal IGF-1 Test and Other ICD9 Code
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+ IGF-1 Result, Abnormal IGF-1 Result, Abnormal = 1 AND IGF-1 Result, Has 253 ICD9 Code = 0 Profile - Acromegarly - Patients With Abnormal IGF-1 Test and Other ICD9 Code
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+ IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Hist IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Hist = 1 AND IGF-1 Result, Abnormal = 0 Profile - Acromegarly - Patients With Not Abnormal IGF-1 Test and Pituitary Gland Neoplasm ICD9 Code
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+ IGF-1 Result, Age Group CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Male = 1 AND test_result_num >157) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Male = 1 AND test_result_num >167) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Male = 1 AND test_result_num >184) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Male = 1 AND test_result_num >225) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Male = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Male = 1 AND test_result_num >292) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Male = 1 AND test_result_num >323) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Male = 1 AND test_result_num >362) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Male = 1 AND test_result_num >407) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Male = 1 AND test_result_num >454) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Male = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Male = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Male = 1 AND test_result_num >551) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Male = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Male = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Male = 1 AND test_result_num >521) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Male = 1 AND test_result_num >494) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Male = 1 AND test_result_num >463) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Male = 1 AND test_result_num >430) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Male = 1 AND test_result_num >355) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Male = 1 AND test_result_num >282) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Male = 1 AND test_result_num >233) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Male = 1 AND test_result_num >216) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Male = 1 AND test_result_num >200) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Male = 1 AND test_result_num >194) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Male = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Male = 1 AND test_result_num >192) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Male = 1 AND test_result_num >179) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Male = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Male = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Male
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+ Has Diag equals Profile - Acromegarly - Diagnosed Patients
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+ IGF-1 Result, Male CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Male = 1 AND test_result_num >157) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Male = 1 AND test_result_num >167) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Male = 1 AND test_result_num >184) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Male = 1 AND test_result_num >225) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Male = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Male = 1 AND test_result_num >292) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Male = 1 AND test_result_num >323) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Male = 1 AND test_result_num >362) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Male = 1 AND test_result_num >407) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Male = 1 AND test_result_num >454) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Male = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Male = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Male = 1 AND test_result_num >551) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Male = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Male = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Male = 1 AND test_result_num >521) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Male = 1 AND test_result_num >494) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Male = 1 AND test_result_num >463) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Male = 1 AND test_result_num >430) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Male = 1 AND test_result_num >355) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Male = 1 AND test_result_num >282) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Male = 1 AND test_result_num >233) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Male = 1 AND test_result_num >216) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Male = 1 AND test_result_num >200) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Male = 1 AND test_result_num >194) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Male = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Male = 1 AND test_result_num >192) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Male = 1 AND test_result_num >179) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Male = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Male = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Male
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+ IGF-1 Result, Abnormal IGF-1 Result, Abnormal = 0 AND IGF-1 Result, Has 253 ICD9 Code = 0 Profile - Acromegarly - Patients With Not Abnormal IGF-1 Test and Other ICD9 Code
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+ IGF-1 Result IGF-1 Result = 1 AND patient_gender = 'M' IGF-1 Result, Male
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+ IGF-1 Result CASE WHEN IGF-1 Result = 1 AND patient_age < 20 THEN patient_age WHEN IGF-1 Result = 1 AND patient_age BETWEEN 21 AND 25 THEN 21 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 26 AND 30 THEN 26 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 31 AND 35 THEN 31 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 36 AND 40 THEN 36 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 41 AND 45 THEN 41 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 46 AND 50 THEN 46 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 51 AND 55 THEN 51 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 56 AND 60 THEN 56 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 61 AND 65 THEN 61 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 66 AND 70 THEN 66 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 71 AND 75 THEN 71 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 76 AND 80 THEN 76 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 81 AND 85 THEN 81 WHEN IGF-1 Result = 1 AND patient_age BETWEEN 86 AND 90 THEN 86 WHEN IGF-1 Result = 1 AND patient_age > 90 THEN 91 END IGF-1 Result, Age Group
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+ IGF-1 Result, Age Group CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Female = 1 AND test_result_num >126) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Female = 1 AND test_result_num >132) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Female = 1 AND test_result_num >145) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Female = 1 AND test_result_num >164) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Female = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Female = 1 AND test_result_num >214) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Female = 1 AND test_result_num >240) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Female = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Female = 1 AND test_result_num >305) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Female = 1 AND test_result_num >349) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Female = 1 AND test_result_num >400) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Female = 1 AND test_result_num >453) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Female = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Female = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Female = 1 AND test_result_num >552) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Female = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Female = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Female = 1 AND test_result_num >517) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Female = 1 AND test_result_num >486) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Female = 1 AND test_result_num >451) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Female = 1 AND test_result_num >416) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Female = 1 AND test_result_num >342) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Female = 1 AND test_result_num >270) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Female = 1 AND test_result_num >243) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Female = 1 AND test_result_num >227) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Female = 1 AND test_result_num >204) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Female = 1 AND test_result_num >195) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Female = 1 AND test_result_num >190) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Female = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Female = 1 AND test_result_num >169) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Female = 1 AND test_result_num >163) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Female = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Female = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Female = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Female = 1 AND test_result_num >178) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Female = 1 AND test_result_num >178) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Female
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+ IGF-1 Result, Male CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Female = 1 AND test_result_num >126) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Female = 1 AND test_result_num >132) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Female = 1 AND test_result_num >145) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Female = 1 AND test_result_num >164) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Female = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Female = 1 AND test_result_num >214) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Female = 1 AND test_result_num >240) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Female = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Female = 1 AND test_result_num >305) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Female = 1 AND test_result_num >349) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Female = 1 AND test_result_num >400) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Female = 1 AND test_result_num >453) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Female = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Female = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Female = 1 AND test_result_num >552) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Female = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Female = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Female = 1 AND test_result_num >517) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Female = 1 AND test_result_num >486) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Female = 1 AND test_result_num >451) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Female = 1 AND test_result_num >416) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Female = 1 AND test_result_num >342) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Female = 1 AND test_result_num >270) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Female = 1 AND test_result_num >243) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Female = 1 AND test_result_num >227) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Female = 1 AND test_result_num >204) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Female = 1 AND test_result_num >195) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Female = 1 AND test_result_num >190) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Female = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Female = 1 AND test_result_num >169) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Female = 1 AND test_result_num >163) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Female = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Female = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Female = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Female = 1 AND test_result_num >178) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Female = 1 AND test_result_num >178) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Female
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+ IGF-1 Result, Has 253 ICD9 Code IGF-1 Result, Abnormal = 1 AND IGF-1 Result, Has 253 ICD9 Code = 0 Profile - Acromegarly - Patients With Abnormal IGF-1 Test and Other ICD9 Code
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+ IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Prior (IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code = 1) OR (IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Prior = 1) IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Hist
17
+ IGF-1 Result, Age Group CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Male = 1 AND test_result_num >157) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Male = 1 AND test_result_num >167) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Male = 1 AND test_result_num >184) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Male = 1 AND test_result_num >225) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Male = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Male = 1 AND test_result_num >292) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Male = 1 AND test_result_num >323) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Male = 1 AND test_result_num >362) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Male = 1 AND test_result_num >407) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Male = 1 AND test_result_num >454) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Male = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Male = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Male = 1 AND test_result_num >551) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Male = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Male = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Male = 1 AND test_result_num >521) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Male = 1 AND test_result_num >494) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Male = 1 AND test_result_num >463) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Male = 1 AND test_result_num >430) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Male = 1 AND test_result_num >355) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Male = 1 AND test_result_num >282) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Male = 1 AND test_result_num >233) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Male = 1 AND test_result_num >216) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Male = 1 AND test_result_num >200) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Male = 1 AND test_result_num >194) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Male = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Male = 1 AND test_result_num >192) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Male = 1 AND test_result_num >179) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Male = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Male = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Male
18
+ IGF-1 Result case when IGF-1 Result = 1 AND '227.3' in (icd9_primary,icd9_secondary,icd9_third,icd9_fourth) then 1 else 0 end IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code
19
+ IGF-1 Result, Female CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Female = 1 AND test_result_num >126) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Female = 1 AND test_result_num >132) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Female = 1 AND test_result_num >145) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Female = 1 AND test_result_num >164) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Female = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Female = 1 AND test_result_num >214) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Female = 1 AND test_result_num >240) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Female = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Female = 1 AND test_result_num >305) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Female = 1 AND test_result_num >349) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Female = 1 AND test_result_num >400) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Female = 1 AND test_result_num >453) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Female = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Female = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Female = 1 AND test_result_num >552) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Female = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Female = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Female = 1 AND test_result_num >517) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Female = 1 AND test_result_num >486) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Female = 1 AND test_result_num >451) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Female = 1 AND test_result_num >416) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Female = 1 AND test_result_num >342) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Female = 1 AND test_result_num >270) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Female = 1 AND test_result_num >243) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Female = 1 AND test_result_num >227) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Female = 1 AND test_result_num >204) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Female = 1 AND test_result_num >195) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Female = 1 AND test_result_num >190) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Female = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Female = 1 AND test_result_num >169) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Female = 1 AND test_result_num >163) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Female = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Female = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Female = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Female = 1 AND test_result_num >178) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Female = 1 AND test_result_num >178) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Female
20
+ IGF-1 Result, Abn High, Male IGF-1 Result, Abn High, Male = 1 OR IGF-1 Result, Abn High, Female = 1 IGF-1 Result, Abnormal
21
+ IGF-1 Result, Has 253 ICD9 Code IGF-1 Result, Has 253 ICD9 Code = 1 OR IGF-1 Result, Abnormal = 1 Has Diag
22
+ IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code prior history of IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Prior
23
+ IGF-1 Result, Female CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Male = 1 AND test_result_num >157) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Male = 1 AND test_result_num >167) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Male = 1 AND test_result_num >184) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Male = 1 AND test_result_num >225) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Male = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Male = 1 AND test_result_num >292) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Male = 1 AND test_result_num >323) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Male = 1 AND test_result_num >362) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Male = 1 AND test_result_num >407) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Male = 1 AND test_result_num >454) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Male = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Male = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Male = 1 AND test_result_num >551) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Male = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Male = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Male = 1 AND test_result_num >521) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Male = 1 AND test_result_num >494) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Male = 1 AND test_result_num >463) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Male = 1 AND test_result_num >430) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Male = 1 AND test_result_num >355) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Male = 1 AND test_result_num >282) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Male = 1 AND test_result_num >233) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Male = 1 AND test_result_num >216) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Male = 1 AND test_result_num >200) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Male = 1 AND test_result_num >194) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Male = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Male = 1 AND test_result_num >192) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Male = 1 AND test_result_num >179) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Male = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Male = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Male
24
+ IGF-1 Result, Abn High, Female IGF-1 Result, Abn High, Male = 1 OR IGF-1 Result, Abn High, Female = 1 IGF-1 Result, Abnormal
25
+ IGF-1 Result, Abnormal IGF-1 Result, Abnormal = 1 AND IGF-1 Result, Has 253 ICD9 Code = 1 Profile - Acromegarly - Patients With Abnormal IGF-1 Test and Acromegarly ICD9 Code
26
+ IGF-1 Result IGF-1 Result = 1 AND patient_gender = 'F' IGF-1 Result, Female
27
+ IGF-1 Result, Male CASE WHEN (IGF-1 Result, Age Group = 0 AND IGF-1 Result, Male = 1 AND test_result_num >157) THEN 1 WHEN (IGF-1 Result, Age Group = 1 AND IGF-1 Result, Male = 1 AND test_result_num >167) THEN 1 WHEN (IGF-1 Result, Age Group = 2 AND IGF-1 Result, Male = 1 AND test_result_num >184) THEN 1 WHEN (IGF-1 Result, Age Group = 3 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 4 AND IGF-1 Result, Male = 1 AND test_result_num >225) THEN 1 WHEN (IGF-1 Result, Age Group = 5 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 6 AND IGF-1 Result, Male = 1 AND test_result_num >267) THEN 1 WHEN (IGF-1 Result, Age Group = 7 AND IGF-1 Result, Male = 1 AND test_result_num >292) THEN 1 WHEN (IGF-1 Result, Age Group = 8 AND IGF-1 Result, Male = 1 AND test_result_num >323) THEN 1 WHEN (IGF-1 Result, Age Group = 9 AND IGF-1 Result, Male = 1 AND test_result_num >362) THEN 1 WHEN (IGF-1 Result, Age Group = 10 AND IGF-1 Result, Male = 1 AND test_result_num >407) THEN 1 WHEN (IGF-1 Result, Age Group = 11 AND IGF-1 Result, Male = 1 AND test_result_num >454) THEN 1 WHEN (IGF-1 Result, Age Group = 12 AND IGF-1 Result, Male = 1 AND test_result_num >499) THEN 1 WHEN (IGF-1 Result, Age Group = 13 AND IGF-1 Result, Male = 1 AND test_result_num >533) THEN 1 WHEN (IGF-1 Result, Age Group = 14 AND IGF-1 Result, Male = 1 AND test_result_num >551) THEN 1 WHEN (IGF-1 Result, Age Group = 15 AND IGF-1 Result, Male = 1 AND test_result_num >554) THEN 1 WHEN (IGF-1 Result, Age Group = 16 AND IGF-1 Result, Male = 1 AND test_result_num >542) THEN 1 WHEN (IGF-1 Result, Age Group = 17 AND IGF-1 Result, Male = 1 AND test_result_num >521) THEN 1 WHEN (IGF-1 Result, Age Group = 18 AND IGF-1 Result, Male = 1 AND test_result_num >494) THEN 1 WHEN (IGF-1 Result, Age Group = 19 AND IGF-1 Result, Male = 1 AND test_result_num >463) THEN 1 WHEN (IGF-1 Result, Age Group = 20 AND IGF-1 Result, Male = 1 AND test_result_num >430) THEN 1 WHEN (IGF-1 Result, Age Group = 21 AND IGF-1 Result, Male = 1 AND test_result_num >355) THEN 1 WHEN (IGF-1 Result, Age Group = 26 AND IGF-1 Result, Male = 1 AND test_result_num >282) THEN 1 WHEN (IGF-1 Result, Age Group = 31 AND IGF-1 Result, Male = 1 AND test_result_num >246) THEN 1 WHEN (IGF-1 Result, Age Group = 36 AND IGF-1 Result, Male = 1 AND test_result_num >233) THEN 1 WHEN (IGF-1 Result, Age Group = 41 AND IGF-1 Result, Male = 1 AND test_result_num >216) THEN 1 WHEN (IGF-1 Result, Age Group = 46 AND IGF-1 Result, Male = 1 AND test_result_num >205) THEN 1 WHEN (IGF-1 Result, Age Group = 51 AND IGF-1 Result, Male = 1 AND test_result_num >200) THEN 1 WHEN (IGF-1 Result, Age Group = 56 AND IGF-1 Result, Male = 1 AND test_result_num >194) THEN 1 WHEN (IGF-1 Result, Age Group = 61 AND IGF-1 Result, Male = 1 AND test_result_num >188) THEN 1 WHEN (IGF-1 Result, Age Group = 66 AND IGF-1 Result, Male = 1 AND test_result_num >192) THEN 1 WHEN (IGF-1 Result, Age Group = 71 AND IGF-1 Result, Male = 1 AND test_result_num >179) THEN 1 WHEN (IGF-1 Result, Age Group = 76 AND IGF-1 Result, Male = 1 AND test_result_num >172) THEN 1 WHEN (IGF-1 Result, Age Group = 81 AND IGF-1 Result, Male = 1 AND test_result_num >165) THEN 1 WHEN (IGF-1 Result, Age Group = 86 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 WHEN (IGF-1 Result, Age Group = 91 AND IGF-1 Result, Male = 1 AND test_result_num >166) THEN 1 ELSE 0 END IGF-1 Result, Abn High, Male
28
+ IGF-1 Result, Abnormal IGF-1 Result, Has 253 ICD9 Code = 1 OR IGF-1 Result, Abnormal = 1 Has Diag
29
+ IGF-1 Result case when IGF-1 Result = 1 AND '253.0' in (icd9_primary,icd9_secondary,icd9_third,icd9_fourth) then 1 else 0 end IGF-1 Result, Has 253 ICD9 Code
30
+ IGF-1 Result, Has 253 ICD9 Code IGF-1 Result, Abnormal = 0 AND IGF-1 Result, Has 253 ICD9 Code = 1 Profile - Acromegarly - Patients With Not Abnormal IGF-1 Test and Acromegarly ICD9 Code
31
+ IGF-1 Result, Abnormal IGF-1 Result, Abnormal = 0 AND IGF-1 Result, Has 253 ICD9 Code = 1 Profile - Acromegarly - Patients With Not Abnormal IGF-1 Test and Acromegarly ICD9 Code
32
+ IGF-1 Result, Abnormal IGF-1 Result, Has Pituitary Gland Neoplasm ICD9 Code, Hist = 1 AND IGF-1 Result, Abnormal = 0 Profile - Acromegarly - Patients With Not Abnormal IGF-1 Test and Pituitary Gland Neoplasm ICD9 Code
data/example/cmap_to_sql.rb ADDED
@@ -0,0 +1,91 @@
1
+ require '/Users/malarcon/medivo/cmap/lib/cmap.rb'
2
+ require 'pry'
3
+
4
+ class PpdmVelmaCode
5
+ attr_reader :propositions_to_sql,:condition
6
+
7
+ def initialize(propositions_to_sql,condition)
8
+ @propositions_to_sql = propositions_to_sql
9
+ @condition = condition
10
+ end
11
+
12
+ def save_to_file(filename,what_to_save)
13
+ output = File.open( "#{filename}","w" )
14
+ output << what_to_save
15
+ output.close
16
+ end
17
+
18
+ def extract_create_sql
19
+ "create table extracts.#{condition} (\n lab_result_id integer,\n input_filename varchar(255),\n patient_id varchar(255),\n patient_gender varchar(255),\n patient_date_of_birth varchar(255),\n patient_state varchar(255),\n diagnosis_codes varchar(255),\n test_result_name varchar(255),\n test_result_value varchar(255),\n test_result_abnormal_flag varchar(255),\n ordering_provider_npi_number varchar(255),\n ordering_provider_first_name varchar(255),\n ordering_provider_last_name varchar(255),\n ordering_practice_lab_account_number varchar(255),\n ordering_practice_address_line_1 varchar(255),\n ordering_practice_zip_code varchar(255),\n\n test_result_name_stnd varchar(128),\n test_result_value_numeric_stnd numeric(23,5),\n test_observation_reported_date varchar(255),\n test_specimen_draw_date varchar(255),\n test_specimen_receipt_date varchar(255),\n diag_1 varchar(16),\n diag_2 varchar(16),\n diag_3 varchar(16),\n diag_4 varchar(16),\n account_type varchar(255),\n provider_type varchar(255)\n);"
20
+ end
21
+
22
+ def extract_select_sql
23
+ extract_select = "select\n -- lochlomond fields\n lab_result_id,\n input_filename,\n token4 as patient_id,\n patient_gender,\n patient_date_of_birth,\n patient_state,\n diagnosis_codes,\n test_result_name,\n test_result_value,\n test_result_abnormal_flag,\n ordering_provider_npi_number,\n ordering_provider_first_name,\n ordering_provider_last_name,\n ordering_practice_lab_account_number,\n ordering_practice_address_line_1,\n ordering_practice_zip_code,\n\n -- standardized fields\n test_result_name_stnd,\n test_result_value_numeric_stnd,\n test_observation_reported_date,\n test_specimen_draw_date,\n test_specimen_receipt_date,\n diag_1,\n diag_2,\n diag_3,\n diag_4,\n account_type,\n provider_type\nfrom\n analytics.lab_result\nwhere"
24
+ results_of_interest = propositions_to_sql.sanitized_graph.children(propositions_to_sql.table_name)
25
+ vertices_of_results = propositions_to_sql.sanitized_graph.edges.select{|e| results_of_interest.include? e.destination_vertex}
26
+ fields = vertices_of_results.map {|e| "#{e.value}" }.join(" or ")
27
+ "#{extract_select} #{fields};"
28
+ end
29
+
30
+ def transform_sql
31
+ transform_header = "set search_path to datamarts;\nDROP TABLE IF EXISTS ai_ppdm_acr;\n\nCREATE TABLE ai_ppdm_acr\n\nAS\n\nSELECT ROW_NUMBER() OVER (ORDER BY patient_id,test_observation_reported_date,lab_result_id) AS record_number,\nDENSE_RANK() OVER (PARTITION BY patient_id ORDER BY test_observation_reported_date ASC,test_result_name_stnd,lab_result_id) AS record_number_asc,\nDENSE_RANK() OVER (PARTITION BY patient_id ORDER BY test_observation_reported_date DESC,test_result_name_stnd,lab_result_id) AS record_number_desc,\nlab_result_id,\ninput_filename,\npatient_id,\nmd5(test_observation_reported_date||patient_id) patient_date_id,\npatient_gender,\npatient_date_of_birth as patient_birth_year,\nCASE WHEN left(test_observation_reported_date,4) = '' then null\nELSE left(test_observation_reported_date,4)::numeric - patient_date_of_birth::numeric END as patient_age,\npatient_state,\ntest_result_name_stnd,\ntest_result_name,\nCASE WHEN test_result_value_numeric_stnd is null and test_result_value like '%<%' or test_result_value like '%>%' then replace(case WHEN test_result_value ~* '< ?[0-9]+ ?not detected' then '0' ELSE regexp_substr(test_result_value,'[0-9]+(\.[0-9]+)? ?') end,',','') *1.00\n WHEN test_result_value_numeric_stnd is null and test_result_value like '%E6' then replace(test_result_value,'E6','')*1000000.00\n WHEN test_result_value_numeric_stnd is null and test_result_value like '%E5' then replace(test_result_value,'E5','')*100000.00\n WHEN test_result_value_numeric_stnd is null and test_result_value like '%E4' then replace(test_result_value,'E4','')*10000.00\n WHEN test_result_value_numeric_stnd is null and test_result_value ~* 'not detected' then 0.00\n WHEN test_result_value_numeric_stnd is null and test_result_value ~* 'detected' then 1.00\nELSE test_result_value_numeric_stnd end test_result_num,\ntest_result_value,\ntest_result_abnormal_flag as test_abnorm_flag,\nTO_DATE(CASE WHEN test_observation_reported_date = '' THEN test_specimen_receipt_date ELSE test_observation_reported_date END,'YYYYMMDD') test_observation_reported_date_dt,\nLEFT (CASE WHEN test_observation_reported_date = '' THEN test_specimen_receipt_date ELSE test_observation_reported_date END,6)*1 test_observation_reported_date_yyyymm,\nTO_DATE(test_specimen_draw_date,'YYYYMMDD') test_specimen_draw_date_dt,\nmd5(coalesce(ordering_provider_npi_number,'')|| coalesce(ordering_provider_first_name,'')||coalesce(ordering_provider_last_name,'')) provider_id,\nordering_practice_lab_account_number practice_id,\nCASE\n WHEN lower(account_type) IN ('other','jail','military','n/a',' ','deleted account') THEN 'Non-Reference'\n WHEN account_type is null THEN 'Non-Reference'\n WHEN lower(account_type) IN ('lab') THEN 'Reference'\n WHEN lower(account_type) IN ('foreign') THEN 'Non-USA'\n ELSE 'UNMAPPED' ||account_type\n END account_type_val,\nprovider_type,\ndiag_1 as icd9_primary,\ndiag_2 as icd9_secondary,\ndiag_3 as icd9_third,\ndiag_4 as icd9_fourth,\nordering_practice_address_line_1 IS NOT NULL has_practice_info,\n((ordering_provider_first_name IS NOT NULL AND ordering_provider_last_name IS NOT NULL) OR ordering_provider_npi_number IS NOT NULL) has_provider_info,\nordering_provider_npi_number <> '' has_npi,\nordering_practice_zip_code\nFROM extracts.#{condition};\n\n"
32
+ transform_body = propositions_to_sql.queries.join("\n")
33
+ "#{transform_header}\n#{transform_body}\n;"
34
+ end
35
+
36
+ def transform_qa_sql
37
+ transform_qa_header = "set search_path to datamarts; \nselect "
38
+ fields_to_sum= propositions_to_sql.sanitized_graph.vertices.select {|v| v != propositions_to_sql.table_name}
39
+ transform_body = fields_to_sum.map {|e| "sum(#{e}) #{e}" }.join("\n, ")
40
+ transform_body_from ="from #{propositions_to_sql.table_name}"
41
+ "#{transform_qa_header}\n#{transform_body}\n#{transform_body_from};"
42
+ end
43
+
44
+ end
45
+
46
+
47
+ if ARGV.empty?
48
+ puts "USAGE: #{$0} <CONDITION>"
49
+ exit
50
+ end
51
+
52
+ condition = ARGV[0]
53
+
54
+
55
+ propositions_path = File.expand_path("./"+condition+".txt", File.dirname(__FILE__))
56
+
57
+ subquery_gsubs = [
58
+ ["prior history of", "update +table_name+ set +destination_vertex+=(SELECT count(*) FROM +table_name+ n1 WHERE n1.patient_id = +table_name+.patient_id AND n1.test_specimen_draw_date_dt <+table_name+.test_specimen_draw_date_dt AND +origin_vertex+=1)>0;"],
59
+ ["equals", "update +table_name+ set +destination_vertex+= +origin_vertex+;"],
60
+ ["order has","update +table_name+ set +destination_vertex+=(SELECT max(+origin_vertex+) FROM +table_name+ n1 WHERE n1.patient_id = +table_name+.patient_id AND n1.order_id = +table_name+.order_id );"]
61
+ ]
62
+
63
+ root_name = "ai_ppdm_"+condition
64
+ args = {
65
+ propositions_path: propositions_path,
66
+ table_name: root_name,
67
+ subquery_gsubs: subquery_gsubs
68
+ }
69
+
70
+ propositions_to_sql = Cmap::PropositionsToSql.new(args)
71
+
72
+ ppdm_extract_code = PpdmVelmaCode.new(propositions_to_sql,condition)
73
+
74
+ puts "\n################################\nSQL - EXTRACT CREATE - #{root_name} - create.sql\n################################\n"
75
+ #puts ppdm_extract_code.extract_create_sql
76
+ ppdm_extract_code.save_to_file("create.sql",ppdm_extract_code.extract_create_sql)
77
+
78
+ puts "\n################################\nSQL - EXTRACT SELECT - #{root_name} - select.sql\n################################\n"
79
+ #puts ppdm_extract_code.extract_select_sql
80
+ ppdm_extract_code.save_to_file("select.sql",ppdm_extract_code.extract_select_sql)
81
+
82
+
83
+ puts "\n################################\nSQL - TRANSFORM - #{root_name} - #{root_name}.sql\n################################\n"
84
+ ppdm_extract_code.save_to_file("#{root_name}.sql",ppdm_extract_code.transform_sql)
85
+ #puts ppdm_extract_code.transform_sql
86
+
87
+ puts "\n################################\nSQL - TRANSFORM QA - #{root_name} - #{root_name}_qa.sql\n################################\n"
88
+ ppdm_extract_code.save_to_file("#{root_name}_qa.sql",ppdm_extract_code.transform_qa_sql)
89
+ #puts ppdm_extract_code.transform_qa_sql
90
+
91
+ #binding.pry
data/lib/cmap/edges_to_queries.rb ADDED
@@ -0,0 +1,43 @@
1
+ module Cmap; class EdgesToQueries
2
+
3
+ attr_reader :edges, :table_name, :subquery_expander
4
+
5
+ def initialize(edges, table_name, subquery_expander)
6
+ @edges = edges
7
+ @table_name = table_name
8
+ @subquery_expander = subquery_expander
9
+ end
10
+
11
+ def queries
12
+ add_columns_queries +
13
+ gsub_subqueries +
14
+ updates
15
+ .delete_if {|q| q.empty?}
16
+ end
17
+
18
+ private
19
+
20
+ def unique_edges
21
+ edges.uniq {|e| [e.destination_vertex, e.value]}
22
+ end
23
+
24
+ def add_columns_queries
25
+ unique_edges.map {|e| "alter table #{table_name} add column #{e.destination_vertex} int2;"}
26
+ end
27
+
28
+ def grouped_edges
29
+ unique_edges.group_by {|e| subquery_expander.update_query?(e)}
30
+ end
31
+
32
+ def gsub_subqueries
33
+ (grouped_edges[true] || []).map {|e| subquery_expander.query(e)}
34
+ end
35
+
36
+ def updates
37
+ u = (grouped_edges[false] || []).map {|e| "#{e.destination_vertex}=(#{e.value})::int"}.join(", ")
38
+ return [] if u.empty?
39
+ ["update #{table_name} set #{u};"]
40
+ end
41
+
42
+ end; end
43
+
data/lib/cmap/graph_sanitizer.rb ADDED
@@ -0,0 +1,44 @@
1
+ module Cmap; class GraphSanitizer
2
+
3
+ attr_reader :graph
4
+
5
+ def initialize(graph)
6
+ @graph = graph
7
+ @sanitized_vertex_lookup = {}
8
+ end
9
+
10
+ def sanitized_graph
11
+ DirectedGraph::Graph.new(sanitized_edges)
12
+ end
13
+
14
+ def edges_with_sanitized_vertices
15
+ graph.edges.map do |edge|
16
+ origin_vertex = sanitize_string(edge.origin_vertex)
17
+ destination_vertex = sanitize_string(edge.destination_vertex)
18
+
19
+ @sanitized_vertex_lookup[edge.origin_vertex] = origin_vertex
20
+ @sanitized_vertex_lookup[edge.destination_vertex] = destination_vertex
21
+
22
+ {origin_vertex: origin_vertex, destination_vertex: destination_vertex, value: edge.value}
23
+ end
24
+ end
25
+
26
+ def sanitize_edge_value(edge_args)
27
+ @sanitized_vertex_lookup.keys.sort.reverse.each do |original_vertex_name|
28
+ edge_args[:value].gsub!(original_vertex_name, @sanitized_vertex_lookup[original_vertex_name])
29
+ end
30
+ edge_args
31
+ end
32
+
33
+ def sanitized_edges
34
+ edges_with_sanitized_vertices.map do |edge_args|
35
+ DirectedGraph::Edge.new(sanitize_edge_value(edge_args))
36
+ end
37
+ end
38
+
39
+ def sanitize_string(string)
40
+ string.gsub(/[^0-9a-zA-Z]+/, '_').downcase
41
+ end
42
+
43
+ end; end
44
+
data/lib/cmap/graph_to_sql.rb CHANGED
@@ -1,47 +1,32 @@
1
1
  module Cmap; class GraphToSql
2
2
 
3
- attr_reader :table_name, :graph, :query_gsubs, :column_gsubs
3
+ attr_reader :table_name, :graph, :subquery_gsubs
4
4
 
5
- def initialize(table_name, graph, query_gsubs = [], column_gsubs = [])
5
+ def initialize(table_name, graph, subquery_gsubs = [])
6
6
  @table_name = table_name
7
7
  @graph = graph
8
- @query_gsubs = query_gsubs
9
- @column_gsubs = column_gsubs
8
+ @subquery_gsubs = subquery_gsubs
10
9
  end
11
10
 
12
11
  def queries
13
- edges.inject([]) do |memo, edge|
14
- memo.push(edge_to_query(edge))
12
+ sorted_grouped_edges.inject([]) do |memo, (_, edges)|
13
+ memo += (EdgesToQueries.new(edges, table_name, subquery_expander).queries)
15
14
  memo
16
15
  end
17
16
  end
18
17
 
19
18
  private
20
19
 
21
- def edge_to_query(edge)
22
- c = column(edge)
23
- q = query(edge)
24
- "alter table #{table_name} add column #{c} int2; update #{table_name} set #{c} = 1 where (#{q});"
20
+ def subquery_expander
21
+ SubqueryExpander.new(table_name: table_name, subquery_gsubs: subquery_gsubs)
25
22
  end
26
23
 
27
- def column(edge)
28
- c = edge.destination_vertex
29
- column_gsubs.each do |gsub|
30
- c = c.gsub(*gsub)
31
- end
32
- c
33
- end
34
-
35
- def query(edge)
36
- q = edge.value
37
- query_gsubs.each do |gsub|
38
- q = q.gsub(*gsub)
39
- end
40
- q
24
+ def sorted_grouped_edges
25
+ Hash[grouped_edges.sort]
41
26
  end
42
27
 
43
- def edges
44
- graph.ordered_edges.uniq {|e| [e.destination_vertex, e.value]}
28
+ def grouped_edges
29
+ graph.edges.group_by {|e| graph.longest_path(table_name, e.destination_vertex).length}
45
30
  end
46
31
 
47
32
  end; end
data/lib/cmap/propositions_to_graph.rb CHANGED
@@ -12,17 +12,17 @@ module Cmap; class PropositionsToGraph
12
12
 
13
13
  private
14
14
 
15
- def propositions
16
- csv_path = File.expand_path(propositions_path, File.dirname(__FILE__))
17
- CSV.read(csv_path, { :col_sep => "\t", :quote_char => '"' })
18
- end
19
-
20
15
  def edges
21
16
  @edges ||= propositions.inject([]) do |memo, e|
22
17
  origin_vertex, value, destination_vertex = e
23
- memo << DirectedGraph::Edge.new(origin_vertex, destination_vertex, value)
18
+ memo << DirectedGraph::Edge.new(origin_vertex: origin_vertex, destination_vertex: destination_vertex, value: value)
24
19
  memo
25
20
  end
26
21
  end
27
22
 
23
+ def propositions
24
+ csv_path = File.expand_path(propositions_path, File.dirname(__FILE__))
25
+ CSV.read(csv_path, { :col_sep => "\t", :quote_char => '"' })
26
+ end
27
+
28
28
  end; end
data/lib/cmap/propositions_to_sql.rb ADDED
@@ -0,0 +1,32 @@
1
+ module Cmap; class PropositionsToSql
2
+
3
+ attr_reader :propositions_path, :table_name, :subquery_gsubs
4
+
5
+ def initialize(args)
6
+ @propositions_path = args.fetch(:propositions_path)
7
+ @table_name = args.fetch(:table_name)
8
+ @subquery_gsubs = args.fetch(:subquery_gsubs, [])
9
+ end
10
+
11
+ def queries
12
+ graph_to_sql.queries
13
+ end
14
+
15
+ def propositions_to_graph
16
+ PropositionsToGraph.new(propositions_path)
17
+ end
18
+
19
+ def raw_graph
20
+ propositions_to_graph.graph
21
+ end
22
+
23
+ def sanitized_graph
24
+ GraphSanitizer.new(raw_graph).sanitized_graph
25
+ end
26
+
27
+ def graph_to_sql
28
+ GraphToSql.new(table_name, sanitized_graph, subquery_gsubs)
29
+ end
30
+
31
+ end; end
32
+
data/lib/cmap/subquery_expander.rb ADDED
@@ -0,0 +1,22 @@
1
+ module Cmap; class SubqueryExpander
2
+
3
+ attr_reader :table_name, :subquery_gsubs
4
+
5
+ def initialize(args)
6
+ @table_name = args.fetch(:table_name)
7
+ @subquery_gsubs = args.fetch(:subquery_gsubs, [])
8
+ end
9
+
10
+ def update_query?(edge)
11
+ edge.value != query(edge)
12
+ end
13
+
14
+ def query(edge)
15
+ r = edge.value
16
+ replacements = [["+table_name+", table_name], ["+destination_vertex+", edge.destination_vertex], ["+origin_vertex+", edge.origin_vertex]]
17
+ (subquery_gsubs + replacements).each {|gsub| r = r.gsub(*gsub)}
18
+ r
19
+ end
20
+
21
+ end; end
22
+
data/lib/cmap/version.rb CHANGED
@@ -1,3 +1,3 @@
1
1
  module Cmap
2
- VERSION = "0.2.0"
2
+ VERSION = "0.3.0"
3
3
  end
data/lib/cmap.rb CHANGED
@@ -1,4 +1,4 @@
1
- require "cmap/version"
1
+ require_relative "./cmap/version"
2
2
 
3
3
  require 'csv'
4
4
  require 'pg'
@@ -6,8 +6,12 @@ require 'pry'
6
6
 
7
7
  require 'directed_graph'
8
8
 
9
+ require_relative "./cmap/graph_sanitizer.rb"
10
+ require_relative "./cmap/subquery_expander.rb"
11
+ require_relative "./cmap/edges_to_queries.rb"
9
12
  require_relative "./cmap/propositions_to_graph.rb"
10
13
  require_relative "./cmap/graph_to_sql.rb"
14
+ require_relative "./cmap/propositions_to_sql.rb"
11
15
  require_relative "./cmap/sql_runner.rb"
12
16
 
13
17
  module Cmap
metadata CHANGED
@@ -1,14 +1,14 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: cmap
3
3
  version: !ruby/object:Gem::Version
4
- version: 0.2.0
4
+ version: 0.3.0
5
5
  platform: ruby
6
6
  authors:
7
7
  - MrPowers
8
8
  autorequire:
9
9
  bindir: exe
10
10
  cert_chain: []
11
- date: 2015-10-06 00:00:00.000000000 Z
11
+ date: 2015-10-26 00:00:00.000000000 Z
12
12
  dependencies:
13
13
  - !ruby/object:Gem::Dependency
14
14
  name: bundler
@@ -80,34 +80,20 @@ dependencies:
80
80
  - - ">="
81
81
  - !ruby/object:Gem::Version
82
82
  version: '0'
83
- - !ruby/object:Gem::Dependency
84
- name: simple-graph
85
- requirement: !ruby/object:Gem::Requirement
86
- requirements:
87
- - - ">="
88
- - !ruby/object:Gem::Version
89
- version: '0'
90
- type: :runtime
91
- prerelease: false
92
- version_requirements: !ruby/object:Gem::Requirement
93
- requirements:
94
- - - ">="
95
- - !ruby/object:Gem::Version
96
- version: '0'
97
83
  - !ruby/object:Gem::Dependency
98
84
  name: directed_graph
99
85
  requirement: !ruby/object:Gem::Requirement
100
86
  requirements:
101
- - - ">="
87
+ - - '='
102
88
  - !ruby/object:Gem::Version
103
- version: '0'
89
+ version: 0.3.0
104
90
  type: :runtime
105
91
  prerelease: false
106
92
  version_requirements: !ruby/object:Gem::Requirement
107
93
  requirements:
108
- - - ">="
94
+ - - '='
109
95
  - !ruby/object:Gem::Version
110
- version: '0'
96
+ version: 0.3.0
111
97
  description: Converts cmap exports that follow strict conventions into postgreSQL
112
98
  for data analysis
113
99
  email:
@@ -126,10 +112,16 @@ files:
126
112
  - bin/console
127
113
  - bin/setup
128
114
  - cmap.gemspec
115
+ - example/acr.txt
116
+ - example/cmap_to_sql.rb
129
117
  - lib/cmap.rb
118
+ - lib/cmap/edges_to_queries.rb
119
+ - lib/cmap/graph_sanitizer.rb
130
120
  - lib/cmap/graph_to_sql.rb
131
121
  - lib/cmap/propositions_to_graph.rb
122
+ - lib/cmap/propositions_to_sql.rb
132
123
  - lib/cmap/sql_runner.rb
124
+ - lib/cmap/subquery_expander.rb
133
125
  - lib/cmap/version.rb
134
126
  - pictures/.DS_Store
135
127
  - pictures/cmap_example.png