cmap 0.2.0

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data/.gitignore

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+/.bundle/
+/.yardoc
+/Gemfile.lock
+/_yardoc/
+/coverage/
+/doc/
+/pkg/
+/spec/reports/
+/tmp/

data/.rspec

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+--format documentation
+--color

data/.travis.yml

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+language: ruby
+rvm:
+  - 2.2.2
+before_install: gem install bundler -v 1.10.5

data/Gemfile

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+source 'https://rubygems.org'
+
+# Specify your gem's dependencies in cmap.gemspec
+gemspec

data/LICENSE.txt

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+The MIT License (MIT)
+
+Copyright (c) 2015 MrPowers
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+THE SOFTWARE.

data/README.md

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+# Cmap
+
+The cmap gem converts the 'Propositions to Text' export file into a directed graph data structure.  The graph can then be converted into a series of postgres SQL queries to generate profiles.
+
+Suppose we start with the following directed graph:
+
+![](https://github.com/MrPowers/cmap/blob/master/pictures/cmap_example.png)
+
+And the following starting database state:
+
+![](https://github.com/MrPowers/cmap/blob/master/pictures/db_starting.png)
+
+cmaps can be exported as a tab delimited text file of the graph edges with the "Propositions to Text" option.  The `Cmap::PropositionsToGraph` is meant to be instantiated with the path to one of these "Propositions to Text" exports.
+
+```ruby
+propositions_to_graph = Cmap::PropositionsToGraph.new("/path/to/propositions_to_text_file")
+propositions_to_graph.graph # a DirectedGraph::Graph object
+```
+
+The `GraphToSql` class is instantiated with the `DirectedGraph::Graph` object and converts the graph to an array of SQL queries:
+
+```ruby
+propositions_to_graph = Cmap::PropositionsToGraph.new("/path/to/propositions_to_text_file")
+today = "'2015-01-01'"
+gsubs = [["90D", "created_at > DATE(#{today}) - interval '90' day"]]
+to_sql = GraphToSql.new("human_lab_data", propositions_to_graph.graph, gsubs)
+
+to_sql.run_queries # returns the following array
+
+[
+  "alter table human_lab_data add column seniors int2; update human_lab_data set seniors = 1 where (age > 65);",
+  "alter table human_lab_data add column american int2; update human_lab_data set american = 1 where (nationality = 'american');",
+  "alter table human_lab_data add column senior_americans int2; update human_lab_data set senior_americans = 1 where (seniors = 1 and american = 1);",
+  "alter table human_lab_data add column recently_created_american int2; update human_lab_data set recently_created_american = 1 where (nationality = 'american' and created_at > DATE('2015-01-01') - interval '90' day);",
+  "alter table human_lab_data add column kids int2; update human_lab_data set kids = 1 where (age < 12);",
+  "alter table human_lab_data add column kid_recently_created_american int2; update human_lab_data set kid_recently_created_american = 1 where (kids=1 AND recently_created_american =1);"
+]
+```
+
+The `SqlRunner` class can be used to actually run the queries and generate the profiles in the database.
+
+![](https://github.com/MrPowers/cmap/blob/master/pictures/db_ending.png)
+
+## Installation
+
+Add this line to your application's Gemfile:
+
+```ruby
+gem 'cmap'
+```
+
+And then require the gem in your project:
+
+```ruby
+require 'cmap'
+```
+
+## Contributing
+
+Bug reports and pull requests are welcome on GitHub at https://github.com/MrPowers/cmap.
+
+
+## License
+
+The gem is available as open source under the terms of the [MIT License](http://opensource.org/licenses/MIT).
+

data/Rakefile

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+require "bundler/gem_tasks"
+require "rspec/core/rake_task"
+
+RSpec::Core::RakeTask.new(:spec)
+
+task :default => :spec

data/bin/console

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+#!/usr/bin/env ruby
+
+require "bundler/setup"
+require "cmap"
+
+# You can add fixtures and/or initialization code here to make experimenting
+# with your gem easier. You can also use a different console, if you like.
+
+# (If you use this, don't forget to add pry to your Gemfile!)
+# require "pry"
+# Pry.start
+
+require "irb"
+IRB.start

data/bin/setup

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+#!/bin/bash
+set -euo pipefail
+IFS=$'\n\t'
+
+bundle install
+
+# Do any other automated setup that you need to do here

data/cmap.gemspec

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+# coding: utf-8
+lib = File.expand_path('../lib', __FILE__)
+$LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
+require 'cmap/version'
+
+Gem::Specification.new do |spec|
+  spec.name          = "cmap"
+  spec.version       = Cmap::VERSION
+  spec.authors       = ["MrPowers"]
+  spec.email         = ["matthewkevinpowers@gmail.com"]
+
+  spec.summary       = %q{Converts cmap exports to SQL}
+  spec.description   = %q{Converts cmap exports that follow strict conventions into postgreSQL for data analysis}
+  spec.homepage      = "https://github.com/MrPowers/cmap"
+  spec.license       = "MIT"
+
+  spec.files         = `git ls-files -z`.split("\x0").reject { |f| f.match(%r{^(test|spec|features)/}) }
+  spec.bindir        = "exe"
+  spec.executables   = spec.files.grep(%r{^exe/}) { |f| File.basename(f) }
+  spec.require_paths = ["lib"]
+
+  spec.add_development_dependency "bundler", "~> 1.10"
+  spec.add_development_dependency "rake", "~> 10.0"
+  spec.add_development_dependency "rspec"
+
+  spec.add_dependency "pg", "0.18.3"
+  spec.add_dependency "pry"
+  spec.add_dependency "simple-graph"
+  spec.add_dependency "directed_graph"
+end

data/lib/cmap/graph_to_sql.rb

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+module Cmap; class GraphToSql
+
+  attr_reader :table_name, :graph, :query_gsubs, :column_gsubs
+
+  def initialize(table_name, graph, query_gsubs = [], column_gsubs = [])
+    @table_name = table_name
+    @graph = graph
+    @query_gsubs = query_gsubs
+    @column_gsubs = column_gsubs
+  end
+
+  def queries
+    edges.inject([]) do |memo, edge|
+      memo.push(edge_to_query(edge))
+      memo
+    end
+  end
+
+  private
+
+  def edge_to_query(edge)
+    c = column(edge)
+    q = query(edge)
+    "alter table #{table_name} add column #{c} int2; update #{table_name} set #{c} = 1 where (#{q});"
+  end
+
+  def column(edge)
+    c = edge.destination_vertex
+    column_gsubs.each do |gsub|
+      c = c.gsub(*gsub)
+    end
+    c
+  end
+
+  def query(edge)
+    q = edge.value
+    query_gsubs.each do |gsub|
+      q = q.gsub(*gsub)
+    end
+    q
+  end
+
+  def edges
+    graph.ordered_edges.uniq {|e| [e.destination_vertex, e.value]}
+  end
+
+end; end
+

data/lib/cmap/propositions_to_graph.rb

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+module Cmap; class PropositionsToGraph
+
+  attr_reader :propositions_path
+
+  def initialize(propositions_path)
+    @propositions_path = propositions_path
+  end
+
+  def graph
+    DirectedGraph::Graph.new(edges)
+  end
+
+  private
+
+  def propositions
+    csv_path = File.expand_path(propositions_path, File.dirname(__FILE__))
+    CSV.read(csv_path, { :col_sep => "\t", :quote_char => '"' })
+  end
+
+  def edges
+    @edges ||= propositions.inject([]) do |memo, e|
+      origin_vertex, value, destination_vertex = e
+      memo << DirectedGraph::Edge.new(origin_vertex, destination_vertex, value)
+      memo
+    end
+  end
+
+end; end

data/lib/cmap/sql_runner.rb

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+module Cmap; class SqlRunner
+
+  attr_reader :db_config
+
+  def initialize(db_config)
+    @db_config = db_config
+  end
+
+  def run_queries(queries)
+    queries.each do |q|
+      connection.exec(q)
+    end
+  end
+
+  def connection
+    @connection ||= PGconn.connect(db_config)
+  end
+
+end; end
+
+

data/lib/cmap/version.rb

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+module Cmap
+  VERSION = "0.2.0"
+end

data/lib/cmap.rb

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+require "cmap/version"
+
+require 'csv'
+require 'pg'
+require 'pry'
+
+require 'directed_graph'
+
+require_relative "./cmap/propositions_to_graph.rb"
+require_relative "./cmap/graph_to_sql.rb"
+require_relative "./cmap/sql_runner.rb"
+
+module Cmap
+end

metadata

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+--- !ruby/object:Gem::Specification
+name: cmap
+version: !ruby/object:Gem::Version
+  version: 0.2.0
+platform: ruby
+authors:
+- MrPowers
+autorequire: 
+bindir: exe
+cert_chain: []
+date: 2015-10-06 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: bundler
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.10'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.10'
+- !ruby/object:Gem::Dependency
+  name: rake
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '10.0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '10.0'
+- !ruby/object:Gem::Dependency
+  name: rspec
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: pg
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - '='
+      - !ruby/object:Gem::Version
+        version: 0.18.3
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - '='
+      - !ruby/object:Gem::Version
+        version: 0.18.3
+- !ruby/object:Gem::Dependency
+  name: pry
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: simple-graph
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: directed_graph
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+description: Converts cmap exports that follow strict conventions into postgreSQL
+  for data analysis
+email:
+- matthewkevinpowers@gmail.com
+executables: []
+extensions: []
+extra_rdoc_files: []
+files:
+- ".gitignore"
+- ".rspec"
+- ".travis.yml"
+- Gemfile
+- LICENSE.txt
+- README.md
+- Rakefile
+- bin/console
+- bin/setup
+- cmap.gemspec
+- lib/cmap.rb
+- lib/cmap/graph_to_sql.rb
+- lib/cmap/propositions_to_graph.rb
+- lib/cmap/sql_runner.rb
+- lib/cmap/version.rb
+- pictures/.DS_Store
+- pictures/cmap_example.png
+- pictures/db_ending.png
+- pictures/db_starting.png
+homepage: https://github.com/MrPowers/cmap
+licenses:
+- MIT
+metadata: {}
+post_install_message: 
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+requirements: []
+rubyforge_project: 
+rubygems_version: 2.4.5
+signing_key: 
+specification_version: 4
+summary: Converts cmap exports to SQL
+test_files: []