cirneco 0.9.3 → 0.9.4
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- checksums.yaml +4 -4
- data/Gemfile.lock +2 -2
- data/lib/cirneco/utils.rb +14 -2
- data/lib/cirneco/version.rb +1 -1
- data/resources/jats-1.1/JATS-journalpublishing1-elements.xsd +8608 -0
- data/resources/jats-1.1/JATS-journalpublishing1-mathml3-elements.xsd +8608 -0
- data/resources/jats-1.1/JATS-journalpublishing1-mathml3.xsd +48 -0
- data/resources/jats-1.1/JATS-journalpublishing1.xsd +59 -0
- data/resources/jats-1.1/module-ali.xsd +46 -0
- data/resources/jats-1.1/standard-modules/mathml2/common/common-attribs.xsd +44 -0
- data/resources/jats-1.1/standard-modules/mathml2/common/math.xsd +126 -0
- data/resources/jats-1.1/standard-modules/mathml2/common/xlink-href.xsd +20 -0
- data/resources/jats-1.1/standard-modules/mathml2/content/arith.xsd +90 -0
- data/resources/jats-1.1/standard-modules/mathml2/content/calculus.xsd +146 -0
- data/resources/jats-1.1/standard-modules/mathml2/content/common-attrib.xsd +30 -0
- data/resources/jats-1.1/standard-modules/mathml2/content/constants.xsd +83 -0
- data/resources/jats-1.1/standard-modules/mathml2/content/constructs.xsd +260 -0
- data/resources/jats-1.1/standard-modules/mathml2/content/elementary-functions.xsd +117 -0
- data/resources/jats-1.1/standard-modules/mathml2/content/functions.xsd +73 -0
- data/resources/jats-1.1/standard-modules/mathml2/content/linear-algebra.xsd +173 -0
- data/resources/jats-1.1/standard-modules/mathml2/content/logic.xsd +53 -0
- data/resources/jats-1.1/standard-modules/mathml2/content/relations.xsd +55 -0
- data/resources/jats-1.1/standard-modules/mathml2/content/semantics.xsd +85 -0
- data/resources/jats-1.1/standard-modules/mathml2/content/sets.xsd +236 -0
- data/resources/jats-1.1/standard-modules/mathml2/content/statistics.xsd +136 -0
- data/resources/jats-1.1/standard-modules/mathml2/content/tokens.xsd +120 -0
- data/resources/jats-1.1/standard-modules/mathml2/content/vector-calculus.xsd +88 -0
- data/resources/jats-1.1/standard-modules/mathml2/content/zzz.tokens.xsd.from.zip +120 -0
- data/resources/jats-1.1/standard-modules/mathml2/mathml2.xsd +59 -0
- data/resources/jats-1.1/standard-modules/mathml2/presentation/action.xsd +44 -0
- data/resources/jats-1.1/standard-modules/mathml2/presentation/characters.xsd +37 -0
- data/resources/jats-1.1/standard-modules/mathml2/presentation/common-attribs.xsd +113 -0
- data/resources/jats-1.1/standard-modules/mathml2/presentation/common-types.xsd +103 -0
- data/resources/jats-1.1/standard-modules/mathml2/presentation/error.xsd +40 -0
- data/resources/jats-1.1/standard-modules/mathml2/presentation/layout.xsd +195 -0
- data/resources/jats-1.1/standard-modules/mathml2/presentation/scripts.xsd +186 -0
- data/resources/jats-1.1/standard-modules/mathml2/presentation/space.xsd +52 -0
- data/resources/jats-1.1/standard-modules/mathml2/presentation/style.xsd +69 -0
- data/resources/jats-1.1/standard-modules/mathml2/presentation/table.xsd +216 -0
- data/resources/jats-1.1/standard-modules/mathml2/presentation/tokens.xsd +124 -0
- data/resources/jats-1.1/standard-modules/xlink.xsd +100 -0
- data/resources/jats-1.1/standard-modules/xml.xsd +287 -0
- data/spec/utils_spec.rb +7 -0
- metadata +39 -1
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
---
|
2
2
|
SHA1:
|
3
|
-
metadata.gz:
|
4
|
-
data.tar.gz:
|
3
|
+
metadata.gz: dec9f419a130f442d9566c1b1b8f14558cd9cc9c
|
4
|
+
data.tar.gz: a3f74b49e2091319e75133d095bbdfcf72617468
|
5
5
|
SHA512:
|
6
|
-
metadata.gz:
|
7
|
-
data.tar.gz:
|
6
|
+
metadata.gz: 709e81691d11909d0eb8422da8b626598728a8833aa075f207f220863048f4228996b01a972d8453d87bf5a70fd41fcb319336d86612f8ced277511b985e486b
|
7
|
+
data.tar.gz: e203227e1b9088c0d31f4c4c7e3bb13f741011e3fae40ace161cc455dcea6ab0633f3acbabdbf7d91cd1c3259647d8f277c4d28ecc9fec47b80f0bec0615c05b
|
data/Gemfile.lock
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
PATH
|
2
2
|
remote: .
|
3
3
|
specs:
|
4
|
-
cirneco (0.9.
|
4
|
+
cirneco (0.9.4)
|
5
5
|
activesupport (~> 4.2, >= 4.2.5)
|
6
6
|
base32-crockford-checksum (~> 0.2.2)
|
7
7
|
bergamasco (~> 0.3)
|
@@ -22,7 +22,7 @@ GEM
|
|
22
22
|
tzinfo (~> 1.1)
|
23
23
|
addressable (2.3.8)
|
24
24
|
base32-crockford-checksum (0.2.3)
|
25
|
-
bergamasco (0.3.
|
25
|
+
bergamasco (0.3.10)
|
26
26
|
activesupport (~> 4.2, >= 4.2.5)
|
27
27
|
addressable (~> 2.3.8)
|
28
28
|
builder (~> 3.2, >= 3.2.2)
|
data/lib/cirneco/utils.rb
CHANGED
@@ -9,6 +9,8 @@ module Cirneco
|
|
9
9
|
# "ZZZZZZZ" decoded as number
|
10
10
|
UPPER_LIMIT = 34359738367
|
11
11
|
|
12
|
+
JATS_SCHEMA = File.expand_path("../../../resources/jats-1.1/JATS-journalpublishing1.xsd", __FILE__)
|
13
|
+
|
12
14
|
LICENSES = {
|
13
15
|
"https://creativecommons.org/licenses/by/4.0/" => "Creative Commons Attribution (CC-BY 4.0)",
|
14
16
|
"https://creativecommons.org/publicdomain/zero/1.0/" => "Creative Commons Public Domain Dedication (CC0 1.0)"
|
@@ -325,6 +327,9 @@ module Cirneco
|
|
325
327
|
metadata["publication_month"] = metadata.fetch("date", "")[5..6].to_i
|
326
328
|
metadata["publication_day"] = metadata.fetch("date", "")[8..9].to_i
|
327
329
|
|
330
|
+
# metadata["accession_number"] = metadata["alternateName"]
|
331
|
+
metadata["journal_title"] = metadata.fetch("isPartOf", {}).fetch("name", nil)
|
332
|
+
|
328
333
|
if metadata["description"].present?
|
329
334
|
metadata["descriptions"] = [{ value: metadata["description"], description_type: "Abstract" }]
|
330
335
|
end
|
@@ -342,7 +347,7 @@ module Cirneco
|
|
342
347
|
|
343
348
|
metadata = metadata.extract!(*%w(publisher doi tags title author date
|
344
349
|
publication_year publication_month publication_day license_name
|
345
|
-
license_url))
|
350
|
+
license_url accession_number journal_title))
|
346
351
|
end
|
347
352
|
|
348
353
|
def generate_jats_for_url(url, options={})
|
@@ -373,6 +378,13 @@ module Cirneco
|
|
373
378
|
end.join("\n")
|
374
379
|
end
|
375
380
|
|
381
|
+
def validate_jats(xml)
|
382
|
+
schema = Nokogiri::XML::Schema(open(JATS_SCHEMA))
|
383
|
+
puts schema.validate(Nokogiri::XML(xml))
|
384
|
+
|
385
|
+
OpenStruct.new(body: { "errors" => schema.validate(Nokogiri::XML(xml)).map { |error| { "title" => error.to_s } } })
|
386
|
+
end
|
387
|
+
|
376
388
|
def url_from_path(site_url, filepath)
|
377
389
|
site_url.to_s.chomp("\\") + "/" + File.basename(filepath)[0..-9] + "/"
|
378
390
|
end
|
@@ -428,7 +440,7 @@ module Cirneco
|
|
428
440
|
def filepath_from_url(url, options={})
|
429
441
|
if doi_from_url(url)
|
430
442
|
response = Maremma.head(url, limit: 0)
|
431
|
-
url = response.headers.fetch("Location", "")
|
443
|
+
url = response.headers.present? ? response.headers.fetch("Location", "") : ""
|
432
444
|
end
|
433
445
|
|
434
446
|
uri = Addressable::URI.parse(url.gsub(Dir.pwd + options[:build_dir].to_s, "")
|
data/lib/cirneco/version.rb
CHANGED