cirneco 0.9.16 → 0.9.17

checksums.yaml

@@ -1,7 +1,7 @@
 ---
-SHA1:
-  metadata.gz: 7ee0608001f28042bd320695cb4e967041abbad3
-  data.tar.gz: bede1ebf522dcc4f1e375f350974096a6053a20a
+SHA256:
+  metadata.gz: 1a62f02ec6dd9d41499762d7895ea4d05e296e9c1de28f4eb3793ba94831a210
+  data.tar.gz: bd7e7994cc3871edb6ea2556ab46fb90beac546e850e0380412ed7a1ba8cace0
 SHA512:
-  metadata.gz: adb555b21099da678e39e24c0601b72a5a818a5c3cdf35a8fa561229fbaa2449243cc75db1fb0c4693ea0a732731e383cf716d27269079c4cbbbdfb92da150a4
-  data.tar.gz: 1a6b59838c76ebb8ddac3b0bf0a47f47ab1d8d85abe58ae1f880dbb51a8afd246f66b53a011a7806b1222a53cd3d71294323049f6f31714e2af3c08c5440aec7
+  metadata.gz: 9f41065948d2e4989f413c576c7212bdb656a00a9f649a9a50132e86dd7f525df35a7444b814d92de23e29ff2c6d616050cecd6b6885ba18fd9cb9cf27bf2737
+  data.tar.gz: 7296b8960ecea524b72b431e0f256e9e62f9383f14af68410d1787e523f9cbab8c61a0381de87bc7fb2b3ef360ddebbbe3a0335d9f08510baaf4629202b8af48

data/Gemfile.lock

@@ -1,28 +1,28 @@
 PATH
   remote: .
   specs:
-    cirneco (0.9.16)
+    cirneco (0.9.17)
       activesupport (>= 4.2.5, < 6)
-      base32-crockford-checksum (~> 0.2.2)
+      base32-url (~> 0.3)
       bergamasco (~> 0.3)
-      bolognese (~> 0.9.32)
+      bolognese (~> 0.9)
       builder (~> 3.2, >= 3.2.2)
       dotenv (~> 2.1, >= 2.1.1)
       maremma (~> 3.5, >= 3.5.7)
-      nokogiri (~> 1.6, >= 1.6.8)
+      nokogiri (~> 1.8.1)
       thor (~> 0.19)
 
 GEM
   remote: https://rubygems.org/
   specs:
-    activesupport (5.1.3)
+    activesupport (5.1.4)
       concurrent-ruby (~> 1.0, >= 1.0.2)
       i18n (~> 0.7)
       minitest (~> 5.1)
       tzinfo (~> 1.1)
-    addressable (2.5.1)
-      public_suffix (~> 2.0, >= 2.0.2)
-    base32-crockford-checksum (0.2.3)
+    addressable (2.5.2)
+      public_suffix (>= 2.0.2, < 4.0)
+    base32-url (0.3)
     benchmark_methods (0.7)
     bergamasco (0.3.17)
       activesupport (>= 4.2.5, < 6)
@@ -34,21 +34,22 @@ GEM
       oj (>= 2.8.3)
       pandoc-ruby (~> 2.0, >= 2.0.0)
       safe_yaml (~> 1.0, >= 1.0.4)
-    bibtex-ruby (4.4.4)
+    bibtex-ruby (4.4.5)
       latex-decode (~> 0.0)
-    bolognese (0.9.43)
+    bolognese (0.9.73)
       activesupport (>= 4.2.5, < 6)
       benchmark_methods (~> 0.7)
       bibtex-ruby (~> 4.1)
       builder (~> 3.2, >= 3.2.2)
       colorize (~> 0.8.1)
       gender_detector (~> 0.1.2)
+      iso8601 (~> 0.9.1)
       json-ld (~> 2.1, >= 2.1.2)
       jsonlint (~> 0.2.0)
       loofah (~> 2.0, >= 2.0.3)
       maremma (~> 3.5, >= 3.5.7)
       namae (~> 0.11.3)
-      nokogiri (~> 1.6, >= 1.6.8)
+      nokogiri (~> 1.8.1)
       oj (>= 2.8.3)
       postrank-uri (~> 1.0, >= 1.0.18)
       rdf-rdfxml (~> 2.0)
@@ -61,11 +62,12 @@ GEM
     concurrent-ruby (1.0.5)
     crack (0.4.3)
       safe_yaml (~> 1.0.0)
+    crass (1.0.3)
     diff-lcs (1.3)
     docile (1.1.5)
     dotenv (2.2.1)
-    ebnf (1.1.1)
-      rdf (~> 2.2)
+    ebnf (1.1.2)
+      rdf (>= 2.2, < 4.0)
       sxp (~> 1.0)
     excon (0.45.4)
     faraday (0.9.2)
@@ -76,27 +78,29 @@ GEM
       faraday (>= 0.7.4, < 1.0)
     gender_detector (0.1.2)
       unicode_utils (>= 1.3.0)
-    haml (5.0.2)
+    haml (5.0.4)
       temple (>= 0.8.0)
       tilt
     hamster (3.0.0)
       concurrent-ruby (~> 1.0)
-    hashdiff (0.3.5)
+    hashdiff (0.3.7)
     htmlentities (4.3.4)
-    i18n (0.8.6)
+    i18n (0.9.1)
+      concurrent-ruby (~> 1.0)
+    iso8601 (0.9.1)
     json (2.1.0)
-    json-ld (2.1.5)
+    json-ld (2.2.1)
       multi_json (~> 1.12)
-      rdf (~> 2.2)
+      rdf (>= 2.2.8, < 4.0)
     jsonlint (0.2.0)
       oj (~> 2)
       trollop (~> 2)
-    latex-decode (0.2.2)
-      unicode (~> 0.4)
+    latex-decode (0.3.1)
     link_header (0.0.8)
-    loofah (2.0.3)
+    loofah (2.1.1)
+      crass (~> 1.0.2)
       nokogiri (>= 1.5.9)
-    maremma (3.5.11)
+    maremma (3.6.2)
       activesupport (>= 4.2.5, < 6)
       addressable (>= 2.3.6)
       builder (~> 3.2, >= 3.2.2)
@@ -105,60 +109,60 @@ GEM
       faraday-encoding (~> 0.0.1)
       faraday_middleware (~> 0.10.0)
       multi_json (~> 1.12)
-      nokogiri (~> 1.6, >= 1.6.8)
+      nokogiri (~> 1.8.1)
       oj (>= 2.8.3)
-    mini_portile2 (2.1.0)
-    minitest (5.10.3)
-    multi_json (1.12.1)
+    mini_portile2 (2.3.0)
+    minitest (5.11.1)
+    multi_json (1.13.1)
     multipart-post (2.0.0)
     namae (0.11.3)
-    nokogiri (1.7.2)
-      mini_portile2 (~> 2.1.0)
+    nokogiri (1.8.1)
+      mini_portile2 (~> 2.3.0)
     oj (2.18.5)
-    pandoc-ruby (2.0.1)
-    postrank-uri (1.0.22)
+    pandoc-ruby (2.0.2)
+    postrank-uri (1.0.23)
       addressable (>= 2.3.0, < 2.6)
-      nokogiri (>= 1.6.1, < 1.8)
+      nokogiri (>= 1.6.1, < 1.9)
       public_suffix (>= 2.0.0, < 2.1)
     public_suffix (2.0.5)
     rack (2.0.3)
-    rack-test (0.7.0)
+    rack-test (0.8.2)
       rack (>= 1.0, < 3)
-    rake (12.0.0)
-    rdf (2.2.7)
+    rake (12.3.0)
+    rdf (3.0.1)
       hamster (~> 3.0)
       link_header (~> 0.0, >= 0.0.8)
-    rdf-aggregate-repo (2.2.0)
-      rdf (~> 2.0)
-    rdf-rdfa (2.2.3)
+    rdf-aggregate-repo (2.2.1)
+      rdf (>= 2.2, < 4.0)
+    rdf-rdfa (2.2.4)
       haml (~> 5.0)
       htmlentities (~> 4.3)
-      rdf (~> 2.2)
-      rdf-aggregate-repo (~> 2.2)
-      rdf-xsd (~> 2.1)
-    rdf-rdfxml (2.2.0)
+      rdf (>= 2.2, < 4.0)
+      rdf-aggregate-repo (>= 2.2, < 4.0)
+      rdf-xsd (>= 2.2, < 4.0)
+    rdf-rdfxml (2.2.1)
       htmlentities (~> 4.3)
-      rdf (~> 2.0)
-      rdf-rdfa (~> 2.0)
-      rdf-xsd (~> 2.0)
-    rdf-turtle (2.2.0)
+      rdf (>= 2.2, < 4.0)
+      rdf-rdfa (>= 2.2, < 4.0)
+      rdf-xsd (>= 2.2, < 4.0)
+    rdf-turtle (2.2.2)
       ebnf (~> 1.1)
-      rdf (~> 2.2)
-    rdf-xsd (2.2.0)
-      rdf (~> 2.1)
-    rspec (3.6.0)
-      rspec-core (~> 3.6.0)
-      rspec-expectations (~> 3.6.0)
-      rspec-mocks (~> 3.6.0)
-    rspec-core (3.6.0)
-      rspec-support (~> 3.6.0)
-    rspec-expectations (3.6.0)
+      rdf (>= 2.2, < 4.0)
+    rdf-xsd (3.0.0)
+      rdf (~> 3.0)
+    rspec (3.7.0)
+      rspec-core (~> 3.7.0)
+      rspec-expectations (~> 3.7.0)
+      rspec-mocks (~> 3.7.0)
+    rspec-core (3.7.1)
+      rspec-support (~> 3.7.0)
+    rspec-expectations (3.7.0)
       diff-lcs (>= 1.2.0, < 2.0)
-      rspec-support (~> 3.6.0)
-    rspec-mocks (3.6.0)
+      rspec-support (~> 3.7.0)
+    rspec-mocks (3.7.0)
       diff-lcs (>= 1.2.0, < 2.0)
-      rspec-support (~> 3.6.0)
-    rspec-support (3.6.0)
+      rspec-support (~> 3.7.0)
+    rspec-support (3.7.0)
     rspec-xsd (0.1.0)
       nokogiri (~> 1.6)
       rspec (~> 3)
@@ -167,20 +171,19 @@ GEM
       docile (~> 1.1.0)
       json (>= 1.8, < 3)
       simplecov-html (~> 0.10.0)
-    simplecov-html (0.10.1)
-    sxp (1.0.0)
-      rdf (~> 2.0)
+    simplecov-html (0.10.2)
+    sxp (1.0.1)
+      rdf (>= 2.2, < 4.0)
     temple (0.8.0)
-    thor (0.19.4)
+    thor (0.20.0)
     thread_safe (0.3.6)
     tilt (2.0.8)
     trollop (2.1.2)
-    tzinfo (1.2.3)
+    tzinfo (1.2.4)
       thread_safe (~> 0.1)
-    unicode (0.4.4.4)
     unicode_utils (1.4.0)
     vcr (3.0.3)
-    webmock (3.0.1)
+    webmock (3.3.0)
       addressable (>= 2.3.6)
       crack (>= 0.3.2)
       hashdiff
@@ -201,4 +204,4 @@ DEPENDENCIES
   webmock (~> 3.0, >= 3.0.1)
 
 BUNDLED WITH
-   1.15.3
+   1.16.0

data/cirneco.gemspec

@@ -17,9 +17,9 @@ Gem::Specification.new do |s|
   # Declary dependencies here, rather than in the Gemfile
   s.add_dependency 'maremma', '~> 3.5', '>= 3.5.7'
   s.add_dependency 'bergamasco', '~> 0.3'
-  s.add_dependency 'bolognese', '~> 0.9.32'
-  s.add_dependency 'base32-crockford-checksum', '~> 0.2.2'
-  s.add_dependency 'nokogiri', '~> 1.6', '>= 1.6.8'
+  s.add_dependency 'bolognese', '~> 0.9'
+  s.add_dependency 'base32-url', '~> 0.3'
+  s.add_dependency 'nokogiri', '~> 1.8.1'
   s.add_dependency 'builder', '~> 3.2', '>= 3.2.2'
   s.add_dependency 'activesupport', '>= 4.2.5', '< 6'
   s.add_dependency 'dotenv', '~> 2.1', '>= 2.1.1'

data/lib/cirneco/data_center.rb

@@ -4,7 +4,6 @@ require 'bolognese'
 
 require_relative 'api'
 require_relative 'utils'
-require_relative 'file_utils'
 require_relative 'base'
 
 module Cirneco
@@ -12,7 +11,6 @@ module Cirneco
     include Cirneco::Base
     include Cirneco::Api
     include Cirneco::Utils
-    include Cirneco::FileUtils
     include Bolognese::Utils
     include Bolognese::DoiUtils
 

data/lib/cirneco/doi.rb

@@ -3,7 +3,6 @@ require 'bolognese'
 
 require_relative 'api'
 require_relative 'utils'
-require_relative 'file_utils'
 require_relative 'base'
 
 module Cirneco
@@ -11,7 +10,6 @@ module Cirneco
     include Cirneco::Base
     include Cirneco::Api
     include Cirneco::Utils
-    include Cirneco::FileUtils
     include Bolognese::Utils
     include Bolognese::DoiUtils
 
@@ -70,7 +68,7 @@ module Cirneco
       puts generate_accession_number(options)
     end
 
-    desc "decode DOI", "decode DOI encoded using Crockford base32 algorithm"
+    desc "decode DOI", "decode DOI encoded using base32-url algorithm"
     def decode(doi)
       number = decode_doi(doi)
 
@@ -81,7 +79,7 @@ module Cirneco
       end
     end
 
-    desc "check DOI", "check DOI using Crockford base32 checksum"
+    desc "check DOI", "check DOI using base32-url checksum"
     def check(doi)
       if decode_doi(doi) > 0
         puts "Checksum for #{doi} is valid"
@@ -89,91 +87,5 @@ module Cirneco
         puts "Checksum for #{doi} is not valid"
       end
     end
-
-    desc "name DOCUMENT", "name document"
-    method_option :length, :type => :numeric
-    method_option :lower_limit, :type => :numeric
-    method_option :split, :type => :numeric, :default => 4
-    method_option :namespace, :default => 'MS-'
-    method_option :opt_in, :type => :boolean
-    def name(filepath)
-      if File.directory?(filepath)
-        response = update_all_accession_numbers(filepath, options)
-      else
-        response = update_accession_number(filepath, options)
-      end
-
-      puts response
-    end
-
-    desc "mint DOCUMENT", "mint document"
-    method_option :sitepath, :default => ENV['SITE_SITEPATH']
-    method_option :authorpath, :default => ENV['SITE_AUTHORPATH']
-    method_option :referencespath, :default => ENV['SITE_REFERENCESPATH']
-    method_option :source_dir, :default => ENV['SOURCE_DIR']
-    method_option :build_dir, :default => ENV['BUILD_DIR']
-    method_option :posts_dir, :default => ENV['POSTS_DIR']
-    method_option :csl, :default => ENV['SITE_CSLPATH']
-    method_option :number, :aliases => '-n'
-    method_option :username, :default => ENV['MDS_USERNAME']
-    method_option :password, :default => ENV['MDS_PASSWORD']
-    method_option :prefix, :default => ENV['PREFIX']
-    method_option :sandbox, :type => :boolean, :force => false
-    method_option :force, :type => :boolean, :force => false
-    def mint(url)
-      response = mint_dois_for_all_urls(url, options)
-      puts response
-    end
-
-    desc "mint and hide DOCUMENT", "mint and hide document"
-    method_option :sitepath, :default => ENV['SITE_SITEPATH']
-    method_option :authorpath, :default => ENV['SITE_AUTHORPATH']
-    method_option :referencespath, :default => ENV['SITE_REFERENCESPATH']
-    method_option :source_dir, :default => ENV['SOURCE_DIR']
-    method_option :build_dir, :default => ENV['BUILD_DIR']
-    method_option :posts_dir, :default => ENV['POSTS_DIR']
-    method_option :csl, :default => ENV['SITE_CSLPATH']
-    method_option :number, :aliases => '-n'
-    method_option :username, :default => ENV['MDS_USERNAME']
-    method_option :password, :default => ENV['MDS_PASSWORD']
-    method_option :prefix, :default => ENV['PREFIX']
-    method_option :sandbox, :type => :boolean, :force => false
-    method_option :force, :type => :boolean, :force => false
-    def mint_and_hide(url)
-      response = mint_and_hide_dois_for_all_urls(url, options)
-      puts response
-    end
-
-    desc "hide DOCUMENT", "hide document"
-    method_option :sitepath, :default => ENV['SITE_SITEPATH']
-    method_option :authorpath, :default => ENV['SITE_AUTHORPATH']
-    method_option :referencespath, :default => ENV['SITE_REFERENCESPATH']
-    method_option :source_dir, :default => ENV['SOURCE_DIR']
-    method_option :build_dir, :default => ENV['BUILD_DIR']
-    method_option :posts_dir, :default => ENV['POSTS_DIR']
-    method_option :csl, :default => ENV['SITE_CSLPATH']
-    method_option :bibliography, :default => ENV['SITE_REFERENCESPATH']
-    method_option :username, :default => ENV['MDS_USERNAME']
-    method_option :password, :default => ENV['MDS_PASSWORD']
-    method_option :sandbox, :type => :boolean, :force => false
-    method_option :force, :type => :boolean, :force => false
-    def hide(url)
-      response = hide_dois_for_all_urls(url, options)
-      puts response
-    end
-
-    desc "write_jats DOCUMENT", "write_jats document"
-    method_option :sitepath, :default => ENV['SITE_SITEPATH']
-    method_option :authorpath, :default => ENV['SITE_AUTHORPATH']
-    method_option :referencespath, :default => ENV['SITE_REFERENCESPATH']
-    method_option :bibliography, :default => ENV['SITE_REFERENCESPATH']
-    method_option :source_dir, :default => ENV['SOURCE_DIR']
-    method_option :build_dir, :default => ENV['BUILD_DIR']
-    method_option :posts_dir, :default => ENV['POSTS_DIR']
-    method_option :csl, :default => ENV['SITE_CSLPATH']
-    def write_jats(url)
-      response = generate_jats_for_all_urls(url, options)
-      puts response
-    end
   end
 end

data/lib/cirneco/media.rb

@@ -3,7 +3,6 @@ require 'active_support/all'
 
 require_relative 'api'
 require_relative 'utils'
-require_relative 'file_utils'
 require_relative 'base'
 
 module Cirneco
@@ -11,8 +10,7 @@ module Cirneco
     include Cirneco::Base
     include Cirneco::Api
     include Cirneco::Utils
-    include Cirneco::FileUtils
-    
+
     desc "get DOI", "get media for DOI"
     method_option :username, :default => ENV['MDS_USERNAME']
     method_option :password, :default => ENV['MDS_PASSWORD']

data/lib/cirneco/metadata.rb

@@ -3,7 +3,6 @@ require 'active_support/all'
 
 require_relative 'api'
 require_relative 'utils'
-require_relative 'file_utils'
 require_relative 'base'
 
 module Cirneco
@@ -11,7 +10,6 @@ module Cirneco
     include Cirneco::Base
     include Cirneco::Api
     include Cirneco::Utils
-    include Cirneco::FileUtils
 
     desc "get DOI", "get metadata for DOI"
     method_option :username, :default => ENV['MDS_USERNAME']

data/lib/cirneco/utils.rb

@@ -1,4 +1,4 @@
-require 'base32/crockford'
+require 'base32/url'
 require 'securerandom'
 require 'bergamasco'
 require 'open-uri'
@@ -20,7 +20,7 @@ module Cirneco
 
     def decode_doi(doi)
       prefix, string = doi.split('/', 2)
-      Base32::Crockford.decode(string.upcase, checksum: true).to_i
+      Base32::URL.decode(string, checksum: true).to_i
     end
 
     def encode_doi(prefix, options={})
@@ -33,7 +33,7 @@ module Cirneco
 
       length = shoulder.length > 0 ? 6 : 8
       split = shoulder.length > 0 ? nil : 4
-      prefix.to_s + "/" + shoulder + Base32::Crockford.encode(number, split: split, length: length, checksum: true).downcase
+      prefix.to_s + "/" + shoulder + Base32::URL.encode(number, split: split, length: length, checksum: true)
     end
 
     def generate_accession_number(options={})

data/lib/cirneco/version.rb

@@ -1,3 +1,3 @@
 module Cirneco
-  VERSION = "0.9.16"
+  VERSION = "0.9.17"
 end

data/lib/cirneco/work.rb

@@ -1,7 +1,6 @@
 require 'bolognese'
 require_relative 'api'
 require_relative 'utils'
-require_relative 'file_utils'
 require_relative 'base'
 
 module Cirneco
@@ -9,7 +8,6 @@ module Cirneco
     include Cirneco::Base
     include Cirneco::Api
     include Cirneco::Utils
-    include Cirneco::FileUtils
 
     attr_reader :media, :username, :password
 

data/spec/api_spec.rb

@@ -1,13 +1,14 @@
 require 'spec_helper'
 
 describe Cirneco::Work, vcr: true, :order => :defined do
-  let(:input) { "https://blog.datacite.org/eating-your-own-dog-food/" }
+  let(:samples_path) { "resources/kernel-4.0/samples/" }
+  let(:input) { samples_path + "datacite-example-complicated-v4.0.xml" }
   let(:media) { [{ mime_type: "application/pdf", url:"http://www.datacite.org/cirneco-test.pdf" }]}
   let(:username) { ENV['MDS_USERNAME'] }
   let(:password) { ENV['MDS_PASSWORD'] }
   let(:options) { { username: username, password: password, sandbox: true } }
   let(:fixture_path) { "spec/fixtures/" }
-  let(:samples_path) { "resources/kernel-4.0/samples/" }
+
 
   subject { Cirneco::Work.new(input: input,
                               media: media,
@@ -18,9 +19,9 @@ describe Cirneco::Work, vcr: true, :order => :defined do
     context "post" do
       it 'should post metadata' do
         response = subject.post_metadata(subject.datacite, options)
-        expect(response.body["data"]).to eq("OK (10.5438/0000-01hc)")
+        expect(response.body["data"]).to eq("OK (10.5072/testpub)")
         expect(response.status).to eq(201)
-        expect(response.headers["Location"]).to eq("http://mds.test.datacite.org/metadata/10.5438/0000-01hc")
+        expect(response.headers["Location"]).to eq("http://mds.test.datacite.org/metadata/10.5072/testpub")
       end
     end
 
@@ -54,8 +55,8 @@ describe Cirneco::Work, vcr: true, :order => :defined do
       it 'should get all dois' do
         response = subject.get_dois(options)
         dois = response.body["data"]
-        expect(dois.length).to eq(521)
-        expect(dois.first).to eq("10.23725/0000-03VC")
+        expect(dois.length).to eq(6)
+        expect(dois.first).to eq("10.5072/0007-NW90")
       end
 
       it 'should get doi' do
@@ -64,7 +65,7 @@ describe Cirneco::Work, vcr: true, :order => :defined do
       end
 
       it 'should get doi not found' do
-        response = subject.get_doi("10.5438/0000-03V", options)
+        response = subject.get_doi("10.5072/0000-03V", options)
         expect(response.status).to eq(404)
       end
 

data/spec/doi_spec.rb

@@ -8,16 +8,11 @@ describe Cirneco::Doi do
 
   let(:number) { 123 }
   let(:prefix) { ENV['PREFIX'] }
-  let(:doi) { "10.5438/0000-03VC" }
+  let(:doi) { "10.5072/55e5-t5c0" }
   let(:url) { "http://www.datacite.org" }
-  let(:filename) { 'cool-dois/index.html' }
-  let(:filepath) { fixture_path + filename }
   let(:username) { ENV['MDS_USERNAME'] }
   let(:password) { ENV['MDS_PASSWORD'] }
-  let(:csl) { "spec/fixtures/apa.csl" }
-  let(:bibliography) { "spec/fixtures/references.yaml" }
   let(:api_options) { { username: username, password: password, sandbox: true } }
-  let(:mint_options) { { username: username, password: password, sandbox: true, source_dir: "/spec/fixtures/", build_dir: "/spec/fixtures/", csl: csl, bibliography: bibliography } }
 
   describe "MDS DOI API", vcr: true, :order => :defined do
     context "put" do
@@ -30,7 +25,7 @@ describe Cirneco::Doi do
     context "get" do
       it 'should get all dois' do
         subject.options = api_options.merge(limit: 3)
-        expect { subject.get "all" }.to output("10.23725/0000-03VC\n10.23725/0000-0A53\n10.23725/GQZDGNZW\n").to_stdout
+        expect { subject.get "all" }.to output("10.5072/0007-NW90\n10.5072/55E5-T5C0\n10.5072/BC11-CQW6\n").to_stdout
       end
 
       it 'should get doi' do
@@ -50,21 +45,12 @@ describe Cirneco::Doi do
       subject.options = { number: number }
       expect { subject.accession_number }.to output("MS-123\n").to_stdout
     end
-
-    it 'updates accession_number for file' do
-      expect { subject.name fixture_path + 'cool-dois.html.md' }.to output("Accession number MS-123 not changed for cool-dois.html.md\n").to_stdout
-    end
-
-    it 'updates accession_number for all files with opt-in' do
-      subject.options = { opt_in: true }
-      expect { subject.name fixture_path }.to output("Accession number MS-124 not changed for cool-dois-minted.html.md\nFile cool-dois-no-accession-number.html.md ignored: no empty accession_number\nAccession number MS-123 not changed for cool-dois.html.md\n").to_stdout
-    end
   end
 
   context "base32" do
     it 'generates a doi' do
       subject.options = { number: number, prefix: prefix }
-      expect { subject.generate }.to output("10.5438/0000-03vc\n").to_stdout
+      expect { subject.generate }.to output("10.5072/0000-03vc\n").to_stdout
     end
 
     it 'requires a prefix' do
@@ -73,7 +59,7 @@ describe Cirneco::Doi do
     end
 
     it 'decodes a doi' do
-      expect { subject.decode doi }.to output("DOI #{doi} was encoded with 123\n").to_stdout
+      expect { subject.decode doi }.to output("DOI #{doi} was encoded with 5551351980\n").to_stdout
     end
 
     it 'checks a doi' do
@@ -85,49 +71,4 @@ describe Cirneco::Doi do
       expect { subject.check doi }.to output("Checksum for #{doi} is not valid\n").to_stdout
     end
   end
-
-  context "mint and hide DOIs", vcr: true, :order => :defined do
-    it 'mints a doi' do
-      subject.options = mint_options
-      expect { subject.mint filepath }.to output("DOI 10.5438/55e5-t5c0 minted for cool-dois.html.md\n").to_stdout
-    end
-
-    it 'hides a doi' do
-      filename = 'cool-dois-minted/index.html'
-      filepath = fixture_path + filename
-      subject.options = mint_options.merge(filepath: filepath)
-      expect { subject.hide filepath }.to output("DOI 10.5438/55e5-t5c0 hidden for cool-dois-minted.html.md\n").to_stdout
-    end
-
-    it 'mints and hides a doi' do
-      subject.options = mint_options
-      expect { subject.mint_and_hide filepath }.to output("DOI 10.5438/55e5-t5c0 minted and hidden for cool-dois.html.md\n").to_stdout
-    end
-
-    it 'mints dois for list of urls' do
-      filepath = fixture_path + 'index.html'
-      subject.options = mint_options
-      expect { subject.mint filepath }.to output("DOI 10.5438/55e5-t5c0 minted for cool-dois.html.md\nDOI 10.5438/0007-nw90 minted for index.html.erb\n").to_stdout
-    end
-
-    it 'hides dois for list of urls' do
-      filepath = fixture_path + 'index.html'
-      subject.options = mint_options
-      expect { subject.hide filepath }.to output("No DOI for cool-dois.html.md\nDOI 10.5438/0000-00ss hidden for index.html.erb\n").to_stdout
-    end
-
-    it 'mints and hides dois for list of urls' do
-      filepath = fixture_path + 'index.html'
-      subject.options = mint_options
-      expect { subject.mint_and_hide filepath }.to output("DOI 10.5438/55e5-t5c0 minted and hidden for cool-dois.html.md\nDOI 10.5438/0000-00ss minted and hidden for index.html.erb\n").to_stdout
-    end
-  end
-
-  context "jats", vcr: true do
-    it 'writes jats for list of urls' do
-      filepath = fixture_path + 'index.html'
-      subject.options = mint_options
-      expect { subject.write_jats filepath }.to output("JATS XML written for cool-dois.html.md\nJATS XML written for index.html.erb\n").to_stdout
-    end
-  end
 end