cirneco 0.5.7 → 0.5.8

data/spec/fixtures/references.bib

@@ -0,0 +1,506 @@
+color: $font-color !important;@article{http://doi.org/10.5281/zenodo.32412,
+  author = {Mayo, Christine and Hull, Elizabeth A. and Vision, Todd J.},
+  title = {{The location of the citation: changing practices in how publications cite original data in the Dryad Digital Repository}},
+  publisher = {Zenodo},
+  year = {2015},
+  doi = {10.5281/zenodo.32412},
+  url = {http://zenodo.org/record/32412}
+
+}
+
+@article{Kratz:2015cr,
+  author = {Kratz, John E and Strasser, Carly},
+  title = {{Making data count}},
+  journal = {Scientific Data},
+  year = {2015},
+  volume = {2},
+  pages = {150039},
+  month = aug,
+  doi = {10.1038/sdata.2015.39},
+  url = {http://www.nature.com/articles/sdata201539}
+}
+
+@article{Eysenbach:2006jo,
+  author = {Eysenbach, Gunther},
+  title = {{Citation advantage of open access articles.}},
+  journal = {PLoS biology},
+  year = {2006},
+  volume = {4},
+  number = {5},
+  pages = {e157},
+  month = may,
+  affiliation = {Centre for Global eHealth Innovation, University Health Network, Toronto, Ontario, Canada. geysenba@uhnres.utoronto.ca},
+  doi = {10.1371/journal.pbio.0040157},
+  pmid = {16683865},
+  pmcid = {PMC1459247},
+  url = {http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=16683865&retmode=ref&cmd=prlinks},
+  uri = {\url{papers3://publication/doi/10.1371/journal.pbio.0040157}}
+}
+
+@article{Piwowar:2013cc,
+  author = {Piwowar, Heather A and Vision, Todd J},
+  title = {{Data reuse and the open data citation advantage}},
+  journal = {PeerJ},
+  year = {2013},
+  volume = {1},
+  pages = {e175},
+  doi = {10.7717/peerj.175}
+}
+
+@data{Irisarri:2013,
+  doi = {10.5061/DRYAD.3QD54},
+  url = {http://doi.org/10.5061/DRYAD.3QD54},
+  author = {Irisarri, Iker and San Mauro, Diego and Abascal, Federico and Ohler, Annemarie and Vences, Miguel and Zardoya, Rafael },
+  publisher = {Dryad Digital Repository},
+  title = {Data from: The origin of modern frogs (Neobatrachia) was accompanied by acceleration in mitochondrial and nuclear substitution rates},
+  year = {2013}
+}
+
+@article{Irisarri:2012gv,
+  author = {Irisarri, Iker and San Mauro, Diego and Abascal, Federico and Ohler, Annemarie and Vences, Miguel and Zardoya, Rafael},
+  title = {{The origin of modern frogs (Neobatrachia) was accompanied by acceleration in mitochondrial and nuclear substitution rates.}},
+  journal = {BMC genomics},
+  year = {2012},
+  volume = {13},
+  pages = {626},
+  doi = {10.1186/1471-2164-13-626},
+  pmid = {23153022},
+  pmcid = {PMC3551647},
+  url = {http://www.biomedcentral.com/1471-2164/13/626/}
+}
+
+@data{https://doi.org/10.5281/ZENODO.20046,
+  url = {https://doi.org/10.5281/ZENODO.20046},
+  author = {Fenner, Martin and Jen Song, Jen and Dennis, Zach and Whitwell, Martyn and Osowski, Joe and Ivimey-Cook, Ruth and Cave, Richard and Lin, Jennifer and Chodacki, John},
+  publisher = {Zenodo},
+  title = {Lagotto 4.2.1},
+  year = {2015}
+}
+
+@data{Barlow:1818,
+  doi = {10.7299/X7MK6BM6},
+  url = {http://doi.org/10.7299/X7MK6BM6},
+  author = {Chester Barlow},
+  publisher = {Museum of Vertebrate Zoology},
+  title = {Pilot Boat #3, on the bar},
+  year = {1818}
+}
+
+@data{Oshu:1955,
+  doi = {10.6083/M4MP51XQ},
+  url = {http://doi.org/10.6083/M4MP51XQ},
+  author = {University of Oregon Medical School},
+  publisher = {Oregon Health & Science University},
+  title = {Unidentified man reading a book in the Old Library},
+  year = {1955}
+}
+
+@data{Unknown:1926,
+  doi = {10.7282/T38C9WT9},
+  url = {http://doi.org/10.7282/T38C9WT9},
+  author = {Unknown},
+  title = {Workmen digging up the road at the corner of Belmont Avenue and Burhans Street in Paterson, New Jersey},
+  year = {1926}
+}
+
+@misc{https://orcid.org/about/what-is-orcid/principles,
+  url = {https://orcid.org/about/what-is-orcid/principles},
+  publisher = {ORCID},
+  title = {Our Principles},
+  year = {2011}
+}
+
+@misc{https://doi.org/10.3932/ETHZ-A-000159123,
+  doi = {10.3932/ETHZ-A-000159123},
+  url = {https://doi.org/10.3932/ETHZ-A-000159123},
+  author = {Unknown},
+  publisher = {ETH-Bibliothek Zürich, Bildarchiv},
+  title = {Hannover, Blick auf Hannover},
+  year = {1931}
+}
+@misc{https://doi.org/10.5281/ZENODO.30799,
+  doi = {10.5281/ZENODO.30799},
+  url = {https://doi.org/10.5281/ZENODO.30799},
+  author = {Fenner, Martin and Demeranville, Tom and Kotarski, Rachael and Vision, Todd and Rueda, Laura and Dasler, Robin and Haak, Laure and Cruse, Patricia and {THOR Consortium}},
+  publisher = {Zenodo},
+  title = {D2.1: Artefact, Contributor, and Organisation Relationship Data Schema},
+  year = {2015}
+}
+@misc{https://doi.org/10.6084/M9.FIGSHARE.1314859,
+  url = {https://doi.org/10.6084/M9.FIGSHARE.1314859},
+  author = {Bilder, Geoffrey and Lin, Jennifer and Neylon, Cameron},
+  publisher = {Figshare},
+  title = {Principles for Open Scholarly Infrastructures-v1},
+  year = {2015}
+}
+
+@misc{https://doi.org/10.5281/zenodo.34671,
+  author = {Rueda, Laura},
+  title = {{DataCite Profiles and ORCID Auto-Update, an Introduction to DataCite}},
+  publisher = {Zenodo},
+  year = 2015,
+  url  = {https://doi.org/10.5281/zenodo.34671}
+}
+
+@misc{https://doi.org/10.5281/zenodo.34670,
+  author = {Brown, Josh},
+  title = {{DataCite/ORCID auto-update and inbox, all you need to know}},
+  publisher = {Zenodo},
+  year = 2015,
+  url = {https://doi.org/10.5281/zenodo.34670}
+}
+
+@misc{https://doi.org/10.5281/zenodo.34673,
+  author = {Fenner, Martin},
+  title = {DataCite/ORCID Integration},
+  publisher = {Zenodo},
+  year = 2015,
+  url = {https://doi.org/10.5281/zenodo.34673}
+}
+
+@article{https://doi.org/10.5334/jors.be,
+  author = {Katz, Daniel},
+  url = {https://doi.org/10.5334/jors.be},
+  year = 2014,
+  month = {sep},
+  publisher = {Ubiquity Press, Ltd.},
+  volume = {2},
+  number = {1},
+  pages = {e20},
+  title = {Transitive Credit as a Means to Address Social and Technological Concerns Stemming from Citation and Attribution of Digital Products},
+  journal = {Journal of Open Research Software}
+}
+@misc{https://doi.org/10.5281/zenodo.31780,
+  author = {Bilder, Geoffrey and Fenner, Martin},
+  title = {DOI Myths... busted},
+  year = 2015,
+  publisher = {Zenodo},
+  url = {https://doi.org/10.5281/zenodo.31780}
+}
+@misc{https://doi.org/10.5281/zenodo.31782,
+  author = {Angjeli, Anila},
+  title = {Managing identities: Interconnecting research and other domains},
+  year = 2015,
+  publisher = {Zenodo},
+  url = {https://doi.org/10.5281/zenodo.31782}
+}
+@misc{https://doi.org/10.5281/zenodo.31783,
+  author = {Kunze, John},
+  title = {Names, Things, and Open Identifier Infrastructure: N2T and ARKs},
+  year = 2015,
+  publisher = {Zenodo},
+  url = {https://doi.org/10.5281/zenodo.31783}
+}
+@misc{https://doi.org/10.5281/zenodo.31784,
+  author = {Lannom, Larry},
+  title = {DONA Foundation, Administering the Global Handle Registry (GHR)},
+  year = 2015,
+  publisher = {Zenodo},
+  url = {https://doi.org/10.5281/zenodo.31784}
+}
+@misc{https://doi.org/10.5281/zenodo.31785,
+  author = {Schwardmann, Ulrich},
+  title = {ePIC - Persistent Identifiers for eResearch},
+  year = 2015,
+  publisher = {Zenodo},
+  url = {https://doi.org/10.5281/zenodo.31785}
+}
+@misc{https://doi.org/10.5281/zenodo.31786,
+  author = {Cambon-Thomsen, Anne},
+  title = {BRIF: Bioresource research impact factor (framework)},
+  year = 2015,
+  publisher = {Zenodo},
+  url = {https://doi.org/10.5281/zenodo.31786}
+}
+@misc{https://doi.org/10.5281/zenodo.31787,
+  author = {Dallmeier-Thiessen, Sünje},
+  title = {Enabling services for data intensive research with THOR},
+  year = 2015,
+  publisher = {Zenodo},
+  url = {https://doi.org/10.5281/zenodo.31787}
+}
+@misc{https://doi.org/10.5281/zenodo.31788,
+  author = {Lehnert, Kerstin},
+  title = {IGSN: International Geo Sample Number. Unambiguous Citation of Physical Samples},
+  year = 2015,
+  publisher = {Zenodo},
+  url = {https://doi.org/10.5281/zenodo.31788}
+}
+@misc{https://doi.org/10.5281/zenodo.31789,
+  author = {Lin, Jennifer},
+  title = {Making Data Count},
+  year = 2015,
+  publisher = {Zenodo},
+  url = {https://doi.org/10.5281/zenodo.31789}
+}
+@misc{https://doi.org/10.5281/zenodo.31790,
+  author = {Weigel, Tobias},
+  title = {PID usage at DKRZ, the role of RDA and ePIC policies},
+  year = 2015,
+  publisher = {Zenodo},
+  url = {https://doi.org/10.5281/zenodo.31790}
+}
+@misc{https://doi.org/10.5281/zenodo.31792,
+  author = {Paglione, Laura},
+  title = {Connecting people to their scholarly activity and outputs},
+  year = 2015,
+  publisher = {Zenodo},
+  url = {https://doi.org/10.5281/zenodo.31792}
+}
+@misc{https://vimeo.com/147743305,
+  author = {Rueda, Laura and Brown, Josh and Fenner, Martin},
+  title = {DataCite Profiles and ORCID Auto-Update},
+  publisher = {DataCite},
+  year = 2015,
+  url = {https://vimeo.com/147743305}
+}
+@misc{https://blog.datacite.org/data-driven-development,
+  author = {Fenner, Martin},
+  title = {Data-Driven Development},
+  publisher = {DataCite Blog},
+  year = 2015,
+  url = {https://blog.datacite.org/data-driven-development}
+}
+@misc{https://blog.datacite.org/explaining-the-datacite-orcid-auto-update,
+  author = {Fenner, Martin},
+  title = {Explaining the DataCite/ORCID Auto-update},
+  publisher = {DataCite Blog},
+  year = 2015,
+  url = {https://blog.datacite.org/explaining-the-datacite-orcid-auto-update}
+}
+@misc{https://blog.datacite.org/adding-references-to-the-datacite-blog,
+  author = {Fenner, Martin},
+  title = {Adding References to the {DataCite} Blog},
+  publisher = {DataCite Blog},
+  year = 2015,
+  url = {https://blog.datacite.org/adding-references-to-the-datacite-blog}
+}
+@misc{https://blog.datacite.org/recap,
+  author = {Cruse, Trisha},
+  title = {Recap: Persistent Identifiers in {Paris}},
+  publisher = {DataCite Blog},
+  year = 2015,
+  url = {https://blog.datacite.org/recap}
+}
+@article{http://doi.org/10.2312/RE3.008,
+  url = {http://doi.org/10.2312/RE3.008},
+  author = {Rücknagel, Jessika and Vierkant, Paul and Ulrich, Robert and Kloska, Gabriele and Schnepf, Edeltraud and Fichtmüller, David and Reuter, Evelyn and Semrau, Angelika and Kindling, Maxi and Pampel, H. and Witt, Michael and Fritze, Florian and van de Sandt, Stephanie and Klump, Jens and Goebelbecker, Hans-Jürgen and Skarupianski, Michael and Bertelmann, Roland and Schirmbacher, Peter and Scholze, Frank and Kramer, Claudia and Fuchs, Claudio and Spier, Shaked and Kirchhoff, Agnes },
+  publisher = {GFZ Germans Research Center for Geosciences},
+  title = {Metadata Schema for the Description of Research Data Repositories},
+  year = {2015}
+}
+@article{http://doi.org/10.1103/physrevlett.116.061102,
+  url = {http://doi.org/10.1103/physrevlett.116.061102},
+  year = 2016,
+  month = {feb},
+  publisher = {American Physical Society ({APS})},
+  volume = {116},
+  number = {6},
+  author = {Abbott, B.P. and Abbott, R. and Abbott, T.D. and Abernathy, M. R. and Acernese, F. and Ackley, K. and Adams, C. and Adams, T. and Addesso, P. and Zweizig, J. },
+  title = {Observation of Gravitational Waves from a Binary Black Hole Merger},
+  journal = {Phys. Rev. Lett.}
+}
+@data{http://doi.org/10.7935/K5MW2F23,
+  url = {http://doi.org/10.7935/K5MW2F23},
+  author = {{LIGO Scientific Collaboration}},
+  publisher = {LIGO Scientific Collaboration},
+  title = {Data release for event GW150914},
+  year = {2016}
+}
+@data{http://doi.org/10.7484/INSPIREHEP.DATA.26B4.TY5F,
+  url = {http://doi.org/10.7484/INSPIREHEP.DATA.26B4.TY5F},
+  author = {Aad, Georges and Abajyan, Tatevik and Abbott, Brad and Abdallah, Jalal and Abdel Khalek, Samah and Abdinov, Ovsat and Aben, Rosemarie and Abi, Babak and Abolins, Maris and Zwalinski, Lukasz },
+  publisher = {HEPDATA},
+  title = {Data from Figure 7 from: Measurements of Higgs boson production and couplings in diboson final states with the ATLAS detector at the LHC},
+  year = {2013}
+}
+@data{http://doi.org/10.7484/INSPIREHEP.DATA.RF5P.6M3K,
+  url = {http://doi.org/10.7484/INSPIREHEP.DATA.RF5P.6M3K},
+  author = {Aad, Georges and Abajyan, Tatevik and Abbott, Brad and Abdallah, Jalal and Abdel Khalek, Samah and Abdinov, Ovsat and Aben, Rosemarie and Abi, Babak and Abolins, Maris and Zwalinski, Lukasz },
+  publisher = {HEPDATA},
+  title = {Data from Figure 7 from: Measurements of Higgs boson production and couplings in diboson final states with the ATLAS detector at the LHC},
+  year = {2013}
+}
+@data{http://doi.org/10.7484/INSPIREHEP.DATA.A78C.HK44,
+  url = {http://doi.org/10.7484/INSPIREHEP.DATA.A78C.HK44},
+  author = {Aad, Georges and Abajyan, Tatevik and Abbott, Brad and Abdallah, Jalal and Abdel Khalek, Samah and Abdinov, Ovsat and Aben, Rosemarie and Abi, Babak and Abolins, Maris and Zwalinski, Lukasz },
+  publisher = {HEPDATA},
+  title = {Data from Figure 7 from: Measurements of Higgs boson production and couplings in diboson final states with the ATLAS detector at the LHC},
+  year = {2013}
+}
+@article{http://doi.org/10.5438/0010,
+  url = {http://doi.org/10.5438/0010},
+  author = {{DataCite Metadata Working Group}},
+  publisher = {DataCite e.V.},
+  title = {DataCite Metadata Schema for the Publication and Citation of Research Data v3.1},
+  year = {2014}
+}
+@misc{http://doi.org/10.5281/ZENODO.49516,
+  url = {http://doi.org/10.5281/ZENODO.49516},
+  author = {Fenner, Martin and Wass, Joe and Song, Jen and Dennis, Zach and Whitwell, Martyn and Osowski, Joe and Ivimey-Cook, Ruth and Cave, Richard and Lin, Jennifer and Chodacki, John },
+  publisher = {Zenodo},
+  title = {Lagotto 5.0.1},
+  year = {2016}
+}
+@data{http://doi.org/10.3334/CDIAC/00001,
+  url = {http://doi.org/10.3334/CDIAC/00001},
+  author = {{Environmental Sciences Division, Oak Ridge National Laboratory}},
+  publisher = {Carbon Dioxide Information Analysis Center (CDIAC)},
+  title = {Global, Regional, and National Fossil-Fuel CO2 Emissions},
+  year = {2009}
+}
+@misc{https://blog.datacite.org/to-better-understand-research-communication-we-need-a-groid-group-object-identifier,
+  author = {Katz, Dan S.},
+  title = {To better understand research communication, we need a GROID (group object identifier)},
+  publisher = {DataCite Blog},
+  year = 2016,
+  url = {https://blog.datacite.org/to-better-understand-research-communication-we-need-a-groid-group-object-identifier}
+}
+@misc{https://blog.datacite.org/reference-lists-and-tables-of-content,
+  author = {Fenner, Martin},
+  title = {Reference Lists and Tables of Content},
+  publisher = {DataCite Blog},
+  year = 2015,
+  url = {https://blog.datacite.org/reference-lists-and-tables-of-content}
+}
+@misc{https://figshare.com/blog/Unveiling_figshare_Collections_a_new_way_to_group_content/202,
+  author = {Hyndman, Alan},
+  title = {Unveiling figshare 'Collections' - a new way to group content},
+  publisher = {Figshare Blog},
+  year = 2016,
+  url = {https://figshare.com/blog/Unveiling_figshare_Collections_a_new_way_to_group_content/202}
+}
+@article{http://doi.org/10.15252/msb.20156658,
+  doi = {10.15252/msb.20156658},
+  url = {http://doi.org/10.15252/msb.20156658},
+  year = 2015,
+  month = {dec},
+  publisher = {{EMBO}},
+  volume = {11},
+  number = {12},
+  pages = {847--847},
+  author = {J. McEntyre and U. Sarkans and A. Brazma},
+  title = {The {BioStudies} database},
+  journal = {Molecular Systems Biology}
+}
+@article{http://doi.org/10.7717/peerj-cs.1,
+  doi = {10.7717/peerj-cs.1},
+  url = {http://doi.org/10.7717/peerj-cs.1},
+  year = 2015,
+  month = {may},
+  publisher = {{PeerJ}},
+  volume = {1},
+  pages = {e1},
+  author = {Starr, Joan and Castro, Eleni and Crosas, Merc{\`{e}} and Dumontier, Michel and Downs, Robert R. and Duerr, Ruth and Haak, Laurel L. and Haendel, Melissa and Herman, Ivan and Hodson, Simon and Hourcl{\'{e}}, Joe and Kratz, John Ernest and Lin, Jennifer and Nielsen, Lars Holm and Nurnberger, Amy and Proell, Stefan and Rauber, Andreas and Sacchi, Simone and Smith, Arthur and Taylor, Mike and Clark, Tim},
+  title = {Achieving human and machine accessibility of cited data in scholarly publications},
+  journal = {PeerJ Computer Science}
+}
+@misc{https://blog.datacite.org/thinking-about-csv,
+  author = {Fenner, Martin},
+  title = {Thinking about {CSV}},
+  publisher = {DataCite Blog},
+  year = 2016,
+  url = {https://blog.datacite.org/thinking-about-csv}
+}
+@misc{https://github.com/datacite/jekyll-csvy,
+  author = {Fenner, Martin},
+  title = {{jekyll-csvy}: Jekyll converter for {CSVY} files},
+  publisher = {GitHub},
+  year = 2016,
+  url = {https://github.com/datacite/jekyll-csvy}
+}
+@misc{https://cran.r-project.org/web/packages/rio/index.html,
+  author = {Becker, Jason and Chan, Chung-hong and Chan, Geoffrey CH and Leeper, Thomas J. and Gandrud, Christopher and MacDonald, Andrew and Zahn, Ista},
+  title = {rio: A Swiss-Army Knife for Data {I/O}},
+  publisher = {CRAN},
+  year = 2016,
+  url = {https://cran.r-project.org/web/packages/rio/index.html}
+}
+@misc{http://doi.org/10.6084/M9.FIGSHARE.3364708.V1,
+  doi = {10.6084/M9.FIGSHARE.3364708.V1},
+  url = {http://doi.org/10.6084/M9.FIGSHARE.3364708.V1},
+  author = {Karcher, Sebastian },
+  publisher = {Figshare},
+  title = {Zotero for Data Repositories},
+  year = {2016}
+}
+@inproceedings{http://doi.org/10.1145/2783446.2783605,
+  doi = {10.1145/2783446.2783605},
+  url = {http://doi.org/10.1145/2783446.2783605},
+  year = 2015,
+  publisher = {Association for Computing Machinery ({ACM})},
+  author = {Kristian Garza and Carole Goble and John Brooke and Caroline Jay},
+  title = {Framing the community data system interface},
+  booktitle = {Proceedings of the 2015 British {HCI} Conference on - British {HCI} {\textquotesingle}15}
+}
+@article{http://doi.org/10.7717/peerj-cs.86,
+  doi = {10.7717/peerj-cs.86},
+  url = {https://peerj.com/articles/cs-86/},
+  year = 2016,
+  month = {september},
+  publisher = {{PeerJ}},
+  author = {AM Smith and DS Katz and KE Niemeyer and FORCE11-Software-Citation-Working-Group},
+  title = {Software citation principles},
+  journal = {PeerJ Computer Science}
+}
+@article{http://doi.org/10.5438/0012,
+  url = {http://doi.org/10.5438/0012},
+  author = {{DataCite Metadata Working Group}},
+  publisher = {DataCite e.V.},
+  title = {DataCite Metadata Schema for the Publication and Citation of Research Data v4.0},
+  year = {2016}
+}
+@misc{https://doi.org/10.5438/2906,
+  doi = {10.5438/2906},
+  url = {https://doi.org/10.5438/2906},
+  author = {Cruse, Patricia and Haak, Laure and Pentz, Ed},
+  publisher = {ORCID},
+  title = {Organization Identifier Project: A Way Forward},
+  year = {2016}
+}
+@misc{https://doi.org/10.5438/7885,
+  doi = {10.5438/7885},
+  url = {https://doi.org/10.5438/7885},
+  author = {Fenner, Martin and Paglione, Laura and Demeranville, Tom and Bilder, Geoff},
+  publisher = {ORCID},
+  title = {Technical Considerations for an Organization Identifier Registry},
+  year = {2016}
+}
+@misc{https://doi.org/10.5438/4716,
+  doi = {10.5438/4716},
+  url = {https://doi.org/10.5438/4716},
+  author = {Bilder, Geoffrey and Brown, Josh and Demeranville, Tom},
+  publisher = {ORCID},
+  title = {Organisation identifiers: current provider survey},
+  year = {2016}
+}
+@misc{https://doi.org/10.6084/M9.FIGSHARE.3479141,
+  doi = {10.6084/M9.FIGSHARE.3479141},
+  url = {https://doi.org/10.6084/M9.FIGSHARE.3479141},
+  author = {Tom Demeranville and Josh Brown and Martin Fenner and Patricia Cruse and Laure Haak and Laura Paglione and Geoffrey Bilder and Jennifer Lin and Ed Pentz},
+  publisher = {Figshare},
+  title = {Organisation Identifiers - Minimum viable product requirements},
+  year = {2016}
+}
+@article{https://doi.org/10.1371/journal.pone.0115253,
+  title = {Scholarly {Context} {Not} {Found}: {One} in {Five} {Articles} {Suffers} from {Reference} {Rot}},
+  volume = {9},
+  issn = {1932-6203},
+  shorttitle = {Scholarly {Context} {Not} {Found}},
+  url = {http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0115253},
+  doi = {10.1371/journal.pone.0115253},
+  number = {12},
+  journal = {PLOS ONE},
+  author = {Klein, Martin and Sompel, Herbert Van de and Sanderson, Robert and Shankar, Harihar and Balakireva, Lyudmila and Zhou, Ke and Tobin, Richard},
+  month = dec,
+  year = {2014},
+  keywords = {Archives, Communications, Computer and information sciences, Evolutionary immunology, Extrapolation, Internet, Publication ethics, Species interactions},
+  pages = {e115253}
+}
+@misc{https://www.w3.org/Provider/Style/URI,
+  title = {Hypertext {Style}: {Cool} {URIs} don't change.},
+  author = {Berners-Lee, Tim},
+  url = {https://www.w3.org/Provider/Style/URI},
+  year = {1998},
+  urldate = {2016-12-14}
+}

data/spec/fixtures/site.yml

@@ -0,0 +1,7 @@
+site_url: https://blog.datacite.org
+site_title: DataCite Blog
+site_default_type: BlogPosting
+site_institution: DataCite
+license:
+  name: Creative Commons Attribution
+  url: "https://creativecommons.org/licenses/by/4.0/"

data/spec/utils_spec.rb

@@ -65,5 +65,28 @@ describe Cirneco::DataCenter, vcr: true, :order => :defined do
       response = subject.register_file(filepath)
       expect(response).to eq("File cool-dois.yml ignored: not a markdown file")
     end
+
+    it 'should generate metadata for work' do
+      filepath = fixture_path + 'cool-dois.html.md'
+      number = 123
+      metadata = subject.generate_metadata_for_work(filepath, number: number, csl: 'spec/fixtures/apa.csl', bibliography: 'spec/fixtures/references.bib')
+      expect(metadata["url"]).to eq("https://blog.datacite.org/cool-dois/")
+      expect(metadata["creators"]).to eq([{:given_name=>"Martin", :family_name=>"Fenner", :orcid=>"0000-0003-1419-2405"}])
+      expect(metadata["descriptions"]).to eq([{:value=>"In 1998 Tim Berners-Lee coined the term cool URIs (1998), that is URIs that don’t change. We know that URLs referenced in the scholarly literature are often not cool, leading to link rot (Klein et al., 2014) and making it hard or impossible to find...",:description_type=>"Abstract"}])
+      expect(metadata["related_identifiers"]).to eq([{:value=>"https://www.w3.org/Provider/Style/URI",
+          :related_identifier_type=>"URL",
+          :relation_type=>"References"},
+        { :value=>"10.1371/JOURNAL.PONE.0115253",
+          :related_identifier_type=>"DOI",
+          :relation_type=>"References" }])
+    end
+
+    it 'should create_work_from_yaml' do
+      filepath = fixture_path + 'cool-dois.html.md'
+      number = 123
+      metadata = subject.generate_metadata_for_work(filepath, number: number, csl: 'spec/fixtures/apa.csl', bibliography: 'spec/fixtures/references.bib')
+      work = subject.create_work_from_metadata(metadata)
+      expect(work.validation_errors).to be_empty
+    end
   end
 end

data/spec/work_spec.rb

@@ -2,6 +2,7 @@ require 'spec_helper'
 
 describe Cirneco::Work, vcr: true do
   let(:doi) { "10.23725/0000-03VC" }
+  let(:url) { "http://www.datacite.org" }
   let(:creators) { [{ given_name: "Elizabeth", family_name: "Miller", orcid: "0000-0001-5000-0007" }] }
   let(:title) { "Full DataCite XML Example" }
   let(:publisher) { "DataCite" }
@@ -9,23 +10,24 @@ describe Cirneco::Work, vcr: true do
   let(:resource_type) { { value: "XML", resource_type_general: "Software" } }
   let(:subjects) { ["000 computer science"] }
   let(:descriptions) { [{ value: "XML example of all DataCite Metadata Schema v4.0 properties.", description_type: "Abstract" }] }
-  let(:rights) { [{ value: "CC0 1.0 Universal", rights_uri: "http://creativecommons.org/publicdomain/zero/1.0/" }] }
-  let(:url) { "http://www.datacite.org" }
+  let(:rights_list) { [{ value: "CC0 1.0 Universal", rights_uri: "http://creativecommons.org/publicdomain/zero/1.0/" }] }
+  let(:metadata) { { "doi" => doi,
+                     "url" => url,
+                     "creators" => creators,
+                     "title" => title,
+                     "publisher" => publisher,
+                     "publication_year" => publication_year,
+                     "resource_type" => resource_type,
+                     "subjects" => subjects,
+                     "descriptions" => descriptions,
+                     "rights_list" => rights_list } }
   let(:media) { [{ mime_type: "application/pdf", url:"http://www.datacite.org/cirneco-test.pdf" }]}
   let(:username) { ENV['MDS_USERNAME'] }
   let(:password) { ENV['MDS_PASSWORD'] }
   let(:fixture_path) { "spec/fixtures/" }
   let(:samples_path) { "resources/kernel-4.0/samples/" }
 
-  subject { Cirneco::Work.new(doi: doi,
-                              creators: creators,
-                              title: title,
-                              publisher: publisher,
-                              publication_year: publication_year,
-                              resource_type: resource_type,
-                              subjects: subjects,
-                              descriptions: descriptions,
-                              rights: rights) }
+  subject { Cirneco::Work.new(metadata) }
 
   describe 'schema' do
     it 'validates example full' do

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: cirneco
 version: !ruby/object:Gem::Version
-  version: 0.5.7
+  version: 0.5.8
 platform: ruby
 authors:
 - Martin Fenner
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2016-12-17 00:00:00.000000000 Z
+date: 2016-12-18 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: maremma
@@ -30,14 +30,14 @@ dependencies:
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: 0.1.1
+        version: '0.2'
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: 0.1.1
+        version: '0.2'
 - !ruby/object:Gem::Dependency
   name: base32-crockford-checksum
   requirement: !ruby/object:Gem::Requirement
@@ -301,7 +301,6 @@ files:
 - ".env.example"
 - ".gitignore"
 - ".travis.yml"
-- 0006.xml
 - Gemfile
 - Gemfile.lock
 - LICENSE.md
@@ -342,8 +341,12 @@ files:
 - resources/kernel-4.0/samples/datacite-example-video-v4.0.xml
 - resources/kernel-4.0/samples/datacite-example-workflow-v4.0.xml
 - spec/api_spec.rb
+- spec/fixtures/apa.csl
+- spec/fixtures/authors.yml
 - spec/fixtures/cool-dois.html.md
 - spec/fixtures/cool-dois.yml
+- spec/fixtures/references.bib
+- spec/fixtures/site.yml
 - spec/fixtures/vcr_cassettes/Cirneco_DataCenter/get/should_get_all_dois_by_prefix.yml
 - spec/fixtures/vcr_cassettes/Cirneco_DataCenter/get/should_get_next_doi.yml
 - spec/fixtures/vcr_cassettes/Cirneco_DataCenter/get/should_get_number_of_latest_doi.yml