cheminee 0.1.9 → 0.1.10

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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data/Gemfile.lock CHANGED
@@ -1,7 +1,7 @@
1
1
  PATH
2
2
  remote: .
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  specs:
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- cheminee (0.1.9)
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+ cheminee (0.1.10)
5
5
  typhoeus (~> 1.0, >= 1.0.1)
6
6
 
7
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  GEM
data/README.md CHANGED
@@ -7,7 +7,7 @@ Cheminée: The Chemical Structure Search Engine
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7
  This SDK is automatically generated by the [OpenAPI Generator](https://openapi-generator.tech) project:
8
8
 
9
9
  - API version: 1.0
10
- - Package version: 0.1.9
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+ - Package version: 0.1.10
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11
  - Build package: org.openapitools.codegen.languages.RubyClientCodegen
12
12
  For more information, please visit [https://github.com/rdkit-rs/cheminee](https://github.com/rdkit-rs/cheminee)
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@@ -24,16 +24,16 @@ gem build cheminee.gemspec
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  Then either install the gem locally:
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26
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  ```shell
27
- gem install ./cheminee-0.1.9.gem
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+ gem install ./cheminee-0.1.10.gem
28
28
  ```
29
29
 
30
- (for development, run `gem install --dev ./cheminee-0.1.9.gem` to install the development dependencies)
30
+ (for development, run `gem install --dev ./cheminee-0.1.10.gem` to install the development dependencies)
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31
 
32
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  or publish the gem to a gem hosting service, e.g. [RubyGems](https://rubygems.org/).
33
33
 
34
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  Finally add this to the Gemfile:
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35
 
36
- gem 'cheminee', '~> 0.1.9'
36
+ gem 'cheminee', '~> 0.1.10'
37
37
 
38
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  ### Install from Git
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39
 
@@ -98,7 +98,8 @@ Class | Method | HTTP request | Description
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  - [Cheminee::Schema](docs/Schema.md)
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  - [Cheminee::Smile](docs/Smile.md)
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100
  - [Cheminee::StandardizedSmile](docs/StandardizedSmile.md)
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- - [Cheminee::SubstructureSearchHit](docs/SubstructureSearchHit.md)
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+ - [Cheminee::StructureResponseError](docs/StructureResponseError.md)
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+ - [Cheminee::StructureSearchHit](docs/StructureSearchHit.md)
102
103
 
103
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104
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  ## Documentation for Authorization
data/docs/DefaultApi.md CHANGED
@@ -268,7 +268,7 @@ No authorization required
268
268
 
269
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  ## v1_indexes_index_search_substructure_get
270
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271
- > <Array<SubstructureSearchHit>> v1_indexes_index_search_substructure_get(index, q)
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+ > <Array<StructureSearchHit>> v1_indexes_index_search_substructure_get(index, smile, opts)
272
272
 
273
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  Perform substructure search against index
274
274
 
@@ -280,11 +280,14 @@ require 'cheminee'
280
280
 
281
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  api_instance = Cheminee::DefaultApi.new
282
282
  index = 'index_example' # String |
283
- q = 'q_example' # String |
283
+ smile = 'smile_example' # String |
284
+ opts = {
285
+ limit: 'limit_example' # String |
286
+ }
284
287
 
285
288
  begin
286
289
  # Perform substructure search against index
287
- result = api_instance.v1_indexes_index_search_substructure_get(index, q)
290
+ result = api_instance.v1_indexes_index_search_substructure_get(index, smile, opts)
288
291
  p result
289
292
  rescue Cheminee::ApiError => e
290
293
  puts "Error when calling DefaultApi->v1_indexes_index_search_substructure_get: #{e}"
@@ -295,15 +298,15 @@ end
295
298
 
296
299
  This returns an Array which contains the response data, status code and headers.
297
300
 
298
- > <Array(<Array<SubstructureSearchHit>>, Integer, Hash)> v1_indexes_index_search_substructure_get_with_http_info(index, q)
301
+ > <Array(<Array<StructureSearchHit>>, Integer, Hash)> v1_indexes_index_search_substructure_get_with_http_info(index, smile, opts)
299
302
 
300
303
  ```ruby
301
304
  begin
302
305
  # Perform substructure search against index
303
- data, status_code, headers = api_instance.v1_indexes_index_search_substructure_get_with_http_info(index, q)
306
+ data, status_code, headers = api_instance.v1_indexes_index_search_substructure_get_with_http_info(index, smile, opts)
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307
  p status_code # => 2xx
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308
  p headers # => { ... }
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- p data # => <Array<SubstructureSearchHit>>
309
+ p data # => <Array<StructureSearchHit>>
307
310
  rescue Cheminee::ApiError => e
308
311
  puts "Error when calling DefaultApi->v1_indexes_index_search_substructure_get_with_http_info: #{e}"
309
312
  end
@@ -314,11 +317,12 @@ end
314
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  | Name | Type | Description | Notes |
315
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  | ---- | ---- | ----------- | ----- |
316
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  | **index** | **String** | | |
317
- | **q** | **String** | | |
320
+ | **smile** | **String** | | |
321
+ | **limit** | **String** | | [optional] |
318
322
 
319
323
  ### Return type
320
324
 
321
- [**Array&lt;SubstructureSearchHit&gt;**](SubstructureSearchHit.md)
325
+ [**Array&lt;StructureSearchHit&gt;**](StructureSearchHit.md)
322
326
 
323
327
  ### Authorization
324
328
 
@@ -0,0 +1,18 @@
1
+ # Cheminee::StructureResponseError
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+
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+ ## Properties
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+
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+ | Name | Type | Description | Notes |
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+ | ---- | ---- | ----------- | ----- |
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+ | **error** | **String** | | |
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+
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+ ## Example
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+
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+ ```ruby
12
+ require 'cheminee'
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+
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+ instance = Cheminee::StructureResponseError.new(
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+ error: null
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+ )
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+ ```
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+
@@ -0,0 +1,26 @@
1
+ # Cheminee::StructureSearchHit
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+
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+ ## Properties
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+
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+ | Name | Type | Description | Notes |
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+ | ---- | ---- | ----------- | ----- |
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+ | **extra_data** | **Object** | | |
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+ | **smiles** | **String** | | |
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+ | **score** | **Float** | | |
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+ | **query** | **String** | | |
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+ | **used_tautomers** | **Boolean** | | |
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+
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+ ## Example
14
+
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+ ```ruby
16
+ require 'cheminee'
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+
18
+ instance = Cheminee::StructureSearchHit.new(
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+ extra_data: null,
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+ smiles: null,
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+ score: null,
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+ query: null,
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+ used_tautomers: null
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+ )
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+ ```
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+
@@ -280,20 +280,22 @@ module Cheminee
280
280
 
281
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  # Perform substructure search against index
282
282
  # @param index [String]
283
- # @param q [String]
283
+ # @param smile [String]
284
284
  # @param [Hash] opts the optional parameters
285
- # @return [Array<SubstructureSearchHit>]
286
- def v1_indexes_index_search_substructure_get(index, q, opts = {})
287
- data, _status_code, _headers = v1_indexes_index_search_substructure_get_with_http_info(index, q, opts)
285
+ # @option opts [String] :limit
286
+ # @return [Array<StructureSearchHit>]
287
+ def v1_indexes_index_search_substructure_get(index, smile, opts = {})
288
+ data, _status_code, _headers = v1_indexes_index_search_substructure_get_with_http_info(index, smile, opts)
288
289
  data
289
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  end
290
291
 
291
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  # Perform substructure search against index
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293
  # @param index [String]
293
- # @param q [String]
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+ # @param smile [String]
294
295
  # @param [Hash] opts the optional parameters
295
- # @return [Array<(Array<SubstructureSearchHit>, Integer, Hash)>] Array<SubstructureSearchHit> data, response status code and response headers
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- def v1_indexes_index_search_substructure_get_with_http_info(index, q, opts = {})
296
+ # @option opts [String] :limit
297
+ # @return [Array<(Array<StructureSearchHit>, Integer, Hash)>] Array<StructureSearchHit> data, response status code and response headers
298
+ def v1_indexes_index_search_substructure_get_with_http_info(index, smile, opts = {})
297
299
  if @api_client.config.debugging
298
300
  @api_client.config.logger.debug 'Calling API: DefaultApi.v1_indexes_index_search_substructure_get ...'
299
301
  end
@@ -301,16 +303,17 @@ module Cheminee
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303
  if @api_client.config.client_side_validation && index.nil?
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304
  fail ArgumentError, "Missing the required parameter 'index' when calling DefaultApi.v1_indexes_index_search_substructure_get"
303
305
  end
304
- # verify the required parameter 'q' is set
305
- if @api_client.config.client_side_validation && q.nil?
306
- fail ArgumentError, "Missing the required parameter 'q' when calling DefaultApi.v1_indexes_index_search_substructure_get"
306
+ # verify the required parameter 'smile' is set
307
+ if @api_client.config.client_side_validation && smile.nil?
308
+ fail ArgumentError, "Missing the required parameter 'smile' when calling DefaultApi.v1_indexes_index_search_substructure_get"
307
309
  end
308
310
  # resource path
309
311
  local_var_path = '/v1/indexes/{index}/search/substructure'.sub('{' + 'index' + '}', CGI.escape(index.to_s))
310
312
 
311
313
  # query parameters
312
314
  query_params = opts[:query_params] || {}
313
- query_params[:'q'] = q
315
+ query_params[:'smile'] = smile
316
+ query_params[:'limit'] = opts[:'limit'] if !opts[:'limit'].nil?
314
317
 
315
318
  # header parameters
316
319
  header_params = opts[:header_params] || {}
@@ -324,7 +327,7 @@ module Cheminee
324
327
  post_body = opts[:debug_body]
325
328
 
326
329
  # return_type
327
- return_type = opts[:debug_return_type] || 'Array<SubstructureSearchHit>'
330
+ return_type = opts[:debug_return_type] || 'Array<StructureSearchHit>'
328
331
 
329
332
  # auth_names
330
333
  auth_names = opts[:debug_auth_names] || []
@@ -0,0 +1,221 @@
1
+ =begin
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+ #Cheminée
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+
4
+ #Cheminée: The Chemical Structure Search Engine
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+
6
+ The version of the OpenAPI document: 1.0
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+
8
+ Generated by: https://openapi-generator.tech
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+ OpenAPI Generator version: 7.1.0-SNAPSHOT
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+
11
+ =end
12
+
13
+ require 'date'
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+ require 'time'
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+
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+ module Cheminee
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+ class StructureResponseError
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+ attr_accessor :error
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+
20
+ # Attribute mapping from ruby-style variable name to JSON key.
21
+ def self.attribute_map
22
+ {
23
+ :'error' => :'error'
24
+ }
25
+ end
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+
27
+ # Returns all the JSON keys this model knows about
28
+ def self.acceptable_attributes
29
+ attribute_map.values
30
+ end
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+
32
+ # Attribute type mapping.
33
+ def self.openapi_types
34
+ {
35
+ :'error' => :'String'
36
+ }
37
+ end
38
+
39
+ # List of attributes with nullable: true
40
+ def self.openapi_nullable
41
+ Set.new([
42
+ ])
43
+ end
44
+
45
+ # Initializes the object
46
+ # @param [Hash] attributes Model attributes in the form of hash
47
+ def initialize(attributes = {})
48
+ if (!attributes.is_a?(Hash))
49
+ fail ArgumentError, "The input argument (attributes) must be a hash in `Cheminee::StructureResponseError` initialize method"
50
+ end
51
+
52
+ # check to see if the attribute exists and convert string to symbol for hash key
53
+ attributes = attributes.each_with_object({}) { |(k, v), h|
54
+ if (!self.class.attribute_map.key?(k.to_sym))
55
+ fail ArgumentError, "`#{k}` is not a valid attribute in `Cheminee::StructureResponseError`. Please check the name to make sure it's valid. List of attributes: " + self.class.attribute_map.keys.inspect
56
+ end
57
+ h[k.to_sym] = v
58
+ }
59
+
60
+ if attributes.key?(:'error')
61
+ self.error = attributes[:'error']
62
+ else
63
+ self.error = nil
64
+ end
65
+ end
66
+
67
+ # Show invalid properties with the reasons. Usually used together with valid?
68
+ # @return Array for valid properties with the reasons
69
+ def list_invalid_properties
70
+ warn '[DEPRECATED] the `list_invalid_properties` method is obsolete'
71
+ invalid_properties = Array.new
72
+ if @error.nil?
73
+ invalid_properties.push('invalid value for "error", error cannot be nil.')
74
+ end
75
+
76
+ invalid_properties
77
+ end
78
+
79
+ # Check to see if the all the properties in the model are valid
80
+ # @return true if the model is valid
81
+ def valid?
82
+ warn '[DEPRECATED] the `valid?` method is obsolete'
83
+ return false if @error.nil?
84
+ true
85
+ end
86
+
87
+ # Checks equality by comparing each attribute.
88
+ # @param [Object] Object to be compared
89
+ def ==(o)
90
+ return true if self.equal?(o)
91
+ self.class == o.class &&
92
+ error == o.error
93
+ end
94
+
95
+ # @see the `==` method
96
+ # @param [Object] Object to be compared
97
+ def eql?(o)
98
+ self == o
99
+ end
100
+
101
+ # Calculates hash code according to all attributes.
102
+ # @return [Integer] Hash code
103
+ def hash
104
+ [error].hash
105
+ end
106
+
107
+ # Builds the object from hash
108
+ # @param [Hash] attributes Model attributes in the form of hash
109
+ # @return [Object] Returns the model itself
110
+ def self.build_from_hash(attributes)
111
+ return nil unless attributes.is_a?(Hash)
112
+ attributes = attributes.transform_keys(&:to_sym)
113
+ transformed_hash = {}
114
+ openapi_types.each_pair do |key, type|
115
+ if attributes.key?(attribute_map[key]) && attributes[attribute_map[key]].nil?
116
+ transformed_hash["#{key}"] = nil
117
+ elsif type =~ /\AArray<(.*)>/i
118
+ # check to ensure the input is an array given that the attribute
119
+ # is documented as an array but the input is not
120
+ if attributes[attribute_map[key]].is_a?(Array)
121
+ transformed_hash["#{key}"] = attributes[attribute_map[key]].map { |v| _deserialize($1, v) }
122
+ end
123
+ elsif !attributes[attribute_map[key]].nil?
124
+ transformed_hash["#{key}"] = _deserialize(type, attributes[attribute_map[key]])
125
+ end
126
+ end
127
+ new(transformed_hash)
128
+ end
129
+
130
+ # Deserializes the data based on type
131
+ # @param string type Data type
132
+ # @param string value Value to be deserialized
133
+ # @return [Object] Deserialized data
134
+ def self._deserialize(type, value)
135
+ case type.to_sym
136
+ when :Time
137
+ Time.parse(value)
138
+ when :Date
139
+ Date.parse(value)
140
+ when :String
141
+ value.to_s
142
+ when :Integer
143
+ value.to_i
144
+ when :Float
145
+ value.to_f
146
+ when :Boolean
147
+ if value.to_s =~ /\A(true|t|yes|y|1)\z/i
148
+ true
149
+ else
150
+ false
151
+ end
152
+ when :Object
153
+ # generic object (usually a Hash), return directly
154
+ value
155
+ when /\AArray<(?<inner_type>.+)>\z/
156
+ inner_type = Regexp.last_match[:inner_type]
157
+ value.map { |v| _deserialize(inner_type, v) }
158
+ when /\AHash<(?<k_type>.+?), (?<v_type>.+)>\z/
159
+ k_type = Regexp.last_match[:k_type]
160
+ v_type = Regexp.last_match[:v_type]
161
+ {}.tap do |hash|
162
+ value.each do |k, v|
163
+ hash[_deserialize(k_type, k)] = _deserialize(v_type, v)
164
+ end
165
+ end
166
+ else # model
167
+ # models (e.g. Pet) or oneOf
168
+ klass = Cheminee.const_get(type)
169
+ klass.respond_to?(:openapi_one_of) ? klass.build(value) : klass.build_from_hash(value)
170
+ end
171
+ end
172
+
173
+ # Returns the string representation of the object
174
+ # @return [String] String presentation of the object
175
+ def to_s
176
+ to_hash.to_s
177
+ end
178
+
179
+ # to_body is an alias to to_hash (backward compatibility)
180
+ # @return [Hash] Returns the object in the form of hash
181
+ def to_body
182
+ to_hash
183
+ end
184
+
185
+ # Returns the object in the form of hash
186
+ # @return [Hash] Returns the object in the form of hash
187
+ def to_hash
188
+ hash = {}
189
+ self.class.attribute_map.each_pair do |attr, param|
190
+ value = self.send(attr)
191
+ if value.nil?
192
+ is_nullable = self.class.openapi_nullable.include?(attr)
193
+ next if !is_nullable || (is_nullable && !instance_variable_defined?(:"@#{attr}"))
194
+ end
195
+
196
+ hash[param] = _to_hash(value)
197
+ end
198
+ hash
199
+ end
200
+
201
+ # Outputs non-array value in the form of hash
202
+ # For object, use to_hash. Otherwise, just return the value
203
+ # @param [Object] value Any valid value
204
+ # @return [Hash] Returns the value in the form of hash
205
+ def _to_hash(value)
206
+ if value.is_a?(Array)
207
+ value.compact.map { |v| _to_hash(v) }
208
+ elsif value.is_a?(Hash)
209
+ {}.tap do |hash|
210
+ value.each { |k, v| hash[k] = _to_hash(v) }
211
+ end
212
+ elsif value.respond_to? :to_hash
213
+ value.to_hash
214
+ else
215
+ value
216
+ end
217
+ end
218
+
219
+ end
220
+
221
+ end
@@ -0,0 +1,281 @@
1
+ =begin
2
+ #Cheminée
3
+
4
+ #Cheminée: The Chemical Structure Search Engine
5
+
6
+ The version of the OpenAPI document: 1.0
7
+
8
+ Generated by: https://openapi-generator.tech
9
+ OpenAPI Generator version: 7.1.0-SNAPSHOT
10
+
11
+ =end
12
+
13
+ require 'date'
14
+ require 'time'
15
+
16
+ module Cheminee
17
+ class StructureSearchHit
18
+ attr_accessor :extra_data
19
+
20
+ attr_accessor :smiles
21
+
22
+ attr_accessor :score
23
+
24
+ attr_accessor :query
25
+
26
+ attr_accessor :used_tautomers
27
+
28
+ # Attribute mapping from ruby-style variable name to JSON key.
29
+ def self.attribute_map
30
+ {
31
+ :'extra_data' => :'extra_data',
32
+ :'smiles' => :'smiles',
33
+ :'score' => :'score',
34
+ :'query' => :'query',
35
+ :'used_tautomers' => :'used_tautomers'
36
+ }
37
+ end
38
+
39
+ # Returns all the JSON keys this model knows about
40
+ def self.acceptable_attributes
41
+ attribute_map.values
42
+ end
43
+
44
+ # Attribute type mapping.
45
+ def self.openapi_types
46
+ {
47
+ :'extra_data' => :'Object',
48
+ :'smiles' => :'String',
49
+ :'score' => :'Float',
50
+ :'query' => :'String',
51
+ :'used_tautomers' => :'Boolean'
52
+ }
53
+ end
54
+
55
+ # List of attributes with nullable: true
56
+ def self.openapi_nullable
57
+ Set.new([
58
+ :'extra_data',
59
+ ])
60
+ end
61
+
62
+ # Initializes the object
63
+ # @param [Hash] attributes Model attributes in the form of hash
64
+ def initialize(attributes = {})
65
+ if (!attributes.is_a?(Hash))
66
+ fail ArgumentError, "The input argument (attributes) must be a hash in `Cheminee::StructureSearchHit` initialize method"
67
+ end
68
+
69
+ # check to see if the attribute exists and convert string to symbol for hash key
70
+ attributes = attributes.each_with_object({}) { |(k, v), h|
71
+ if (!self.class.attribute_map.key?(k.to_sym))
72
+ fail ArgumentError, "`#{k}` is not a valid attribute in `Cheminee::StructureSearchHit`. Please check the name to make sure it's valid. List of attributes: " + self.class.attribute_map.keys.inspect
73
+ end
74
+ h[k.to_sym] = v
75
+ }
76
+
77
+ if attributes.key?(:'extra_data')
78
+ self.extra_data = attributes[:'extra_data']
79
+ else
80
+ self.extra_data = nil
81
+ end
82
+
83
+ if attributes.key?(:'smiles')
84
+ self.smiles = attributes[:'smiles']
85
+ else
86
+ self.smiles = nil
87
+ end
88
+
89
+ if attributes.key?(:'score')
90
+ self.score = attributes[:'score']
91
+ else
92
+ self.score = nil
93
+ end
94
+
95
+ if attributes.key?(:'query')
96
+ self.query = attributes[:'query']
97
+ else
98
+ self.query = nil
99
+ end
100
+
101
+ if attributes.key?(:'used_tautomers')
102
+ self.used_tautomers = attributes[:'used_tautomers']
103
+ else
104
+ self.used_tautomers = nil
105
+ end
106
+ end
107
+
108
+ # Show invalid properties with the reasons. Usually used together with valid?
109
+ # @return Array for valid properties with the reasons
110
+ def list_invalid_properties
111
+ warn '[DEPRECATED] the `list_invalid_properties` method is obsolete'
112
+ invalid_properties = Array.new
113
+ if @smiles.nil?
114
+ invalid_properties.push('invalid value for "smiles", smiles cannot be nil.')
115
+ end
116
+
117
+ if @score.nil?
118
+ invalid_properties.push('invalid value for "score", score cannot be nil.')
119
+ end
120
+
121
+ if @query.nil?
122
+ invalid_properties.push('invalid value for "query", query cannot be nil.')
123
+ end
124
+
125
+ if @used_tautomers.nil?
126
+ invalid_properties.push('invalid value for "used_tautomers", used_tautomers cannot be nil.')
127
+ end
128
+
129
+ invalid_properties
130
+ end
131
+
132
+ # Check to see if the all the properties in the model are valid
133
+ # @return true if the model is valid
134
+ def valid?
135
+ warn '[DEPRECATED] the `valid?` method is obsolete'
136
+ return false if @smiles.nil?
137
+ return false if @score.nil?
138
+ return false if @query.nil?
139
+ return false if @used_tautomers.nil?
140
+ true
141
+ end
142
+
143
+ # Checks equality by comparing each attribute.
144
+ # @param [Object] Object to be compared
145
+ def ==(o)
146
+ return true if self.equal?(o)
147
+ self.class == o.class &&
148
+ extra_data == o.extra_data &&
149
+ smiles == o.smiles &&
150
+ score == o.score &&
151
+ query == o.query &&
152
+ used_tautomers == o.used_tautomers
153
+ end
154
+
155
+ # @see the `==` method
156
+ # @param [Object] Object to be compared
157
+ def eql?(o)
158
+ self == o
159
+ end
160
+
161
+ # Calculates hash code according to all attributes.
162
+ # @return [Integer] Hash code
163
+ def hash
164
+ [extra_data, smiles, score, query, used_tautomers].hash
165
+ end
166
+
167
+ # Builds the object from hash
168
+ # @param [Hash] attributes Model attributes in the form of hash
169
+ # @return [Object] Returns the model itself
170
+ def self.build_from_hash(attributes)
171
+ return nil unless attributes.is_a?(Hash)
172
+ attributes = attributes.transform_keys(&:to_sym)
173
+ transformed_hash = {}
174
+ openapi_types.each_pair do |key, type|
175
+ if attributes.key?(attribute_map[key]) && attributes[attribute_map[key]].nil?
176
+ transformed_hash["#{key}"] = nil
177
+ elsif type =~ /\AArray<(.*)>/i
178
+ # check to ensure the input is an array given that the attribute
179
+ # is documented as an array but the input is not
180
+ if attributes[attribute_map[key]].is_a?(Array)
181
+ transformed_hash["#{key}"] = attributes[attribute_map[key]].map { |v| _deserialize($1, v) }
182
+ end
183
+ elsif !attributes[attribute_map[key]].nil?
184
+ transformed_hash["#{key}"] = _deserialize(type, attributes[attribute_map[key]])
185
+ end
186
+ end
187
+ new(transformed_hash)
188
+ end
189
+
190
+ # Deserializes the data based on type
191
+ # @param string type Data type
192
+ # @param string value Value to be deserialized
193
+ # @return [Object] Deserialized data
194
+ def self._deserialize(type, value)
195
+ case type.to_sym
196
+ when :Time
197
+ Time.parse(value)
198
+ when :Date
199
+ Date.parse(value)
200
+ when :String
201
+ value.to_s
202
+ when :Integer
203
+ value.to_i
204
+ when :Float
205
+ value.to_f
206
+ when :Boolean
207
+ if value.to_s =~ /\A(true|t|yes|y|1)\z/i
208
+ true
209
+ else
210
+ false
211
+ end
212
+ when :Object
213
+ # generic object (usually a Hash), return directly
214
+ value
215
+ when /\AArray<(?<inner_type>.+)>\z/
216
+ inner_type = Regexp.last_match[:inner_type]
217
+ value.map { |v| _deserialize(inner_type, v) }
218
+ when /\AHash<(?<k_type>.+?), (?<v_type>.+)>\z/
219
+ k_type = Regexp.last_match[:k_type]
220
+ v_type = Regexp.last_match[:v_type]
221
+ {}.tap do |hash|
222
+ value.each do |k, v|
223
+ hash[_deserialize(k_type, k)] = _deserialize(v_type, v)
224
+ end
225
+ end
226
+ else # model
227
+ # models (e.g. Pet) or oneOf
228
+ klass = Cheminee.const_get(type)
229
+ klass.respond_to?(:openapi_one_of) ? klass.build(value) : klass.build_from_hash(value)
230
+ end
231
+ end
232
+
233
+ # Returns the string representation of the object
234
+ # @return [String] String presentation of the object
235
+ def to_s
236
+ to_hash.to_s
237
+ end
238
+
239
+ # to_body is an alias to to_hash (backward compatibility)
240
+ # @return [Hash] Returns the object in the form of hash
241
+ def to_body
242
+ to_hash
243
+ end
244
+
245
+ # Returns the object in the form of hash
246
+ # @return [Hash] Returns the object in the form of hash
247
+ def to_hash
248
+ hash = {}
249
+ self.class.attribute_map.each_pair do |attr, param|
250
+ value = self.send(attr)
251
+ if value.nil?
252
+ is_nullable = self.class.openapi_nullable.include?(attr)
253
+ next if !is_nullable || (is_nullable && !instance_variable_defined?(:"@#{attr}"))
254
+ end
255
+
256
+ hash[param] = _to_hash(value)
257
+ end
258
+ hash
259
+ end
260
+
261
+ # Outputs non-array value in the form of hash
262
+ # For object, use to_hash. Otherwise, just return the value
263
+ # @param [Object] value Any valid value
264
+ # @return [Hash] Returns the value in the form of hash
265
+ def _to_hash(value)
266
+ if value.is_a?(Array)
267
+ value.compact.map { |v| _to_hash(v) }
268
+ elsif value.is_a?(Hash)
269
+ {}.tap do |hash|
270
+ value.each { |k, v| hash[k] = _to_hash(v) }
271
+ end
272
+ elsif value.respond_to? :to_hash
273
+ value.to_hash
274
+ else
275
+ value
276
+ end
277
+ end
278
+
279
+ end
280
+
281
+ end
@@ -11,5 +11,5 @@ OpenAPI Generator version: 7.1.0-SNAPSHOT
11
11
  =end
12
12
 
13
13
  module Cheminee
14
- VERSION = '0.1.9'
14
+ VERSION = '0.1.10'
15
15
  end
data/lib/cheminee.rb CHANGED
@@ -29,7 +29,8 @@ require 'cheminee/models/post_index_bulk_response_ok_status'
29
29
  require 'cheminee/models/schema'
30
30
  require 'cheminee/models/smile'
31
31
  require 'cheminee/models/standardized_smile'
32
- require 'cheminee/models/substructure_search_hit'
32
+ require 'cheminee/models/structure_response_error'
33
+ require 'cheminee/models/structure_search_hit'
33
34
 
34
35
  # APIs
35
36
  require 'cheminee/api/default_api'
Binary file
@@ -0,0 +1,36 @@
1
+ =begin
2
+ #Cheminée
3
+
4
+ #Cheminée: The Chemical Structure Search Engine
5
+
6
+ The version of the OpenAPI document: 1.0
7
+
8
+ Generated by: https://openapi-generator.tech
9
+ OpenAPI Generator version: 7.1.0-SNAPSHOT
10
+
11
+ =end
12
+
13
+ require 'spec_helper'
14
+ require 'json'
15
+ require 'date'
16
+
17
+ # Unit tests for Cheminee::StructureResponseError
18
+ # Automatically generated by openapi-generator (https://openapi-generator.tech)
19
+ # Please update as you see appropriate
20
+ describe Cheminee::StructureResponseError do
21
+ let(:instance) { Cheminee::StructureResponseError.new }
22
+
23
+ describe 'test an instance of StructureResponseError' do
24
+ it 'should create an instance of StructureResponseError' do
25
+ # uncomment below to test the instance creation
26
+ #expect(instance).to be_instance_of(Cheminee::StructureResponseError)
27
+ end
28
+ end
29
+
30
+ describe 'test attribute "error"' do
31
+ it 'should work' do
32
+ # assertion here. ref: https://rspec.info/features/3-12/rspec-expectations/built-in-matchers/
33
+ end
34
+ end
35
+
36
+ end
@@ -0,0 +1,60 @@
1
+ =begin
2
+ #Cheminée
3
+
4
+ #Cheminée: The Chemical Structure Search Engine
5
+
6
+ The version of the OpenAPI document: 1.0
7
+
8
+ Generated by: https://openapi-generator.tech
9
+ OpenAPI Generator version: 7.1.0-SNAPSHOT
10
+
11
+ =end
12
+
13
+ require 'spec_helper'
14
+ require 'json'
15
+ require 'date'
16
+
17
+ # Unit tests for Cheminee::StructureSearchHit
18
+ # Automatically generated by openapi-generator (https://openapi-generator.tech)
19
+ # Please update as you see appropriate
20
+ describe Cheminee::StructureSearchHit do
21
+ let(:instance) { Cheminee::StructureSearchHit.new }
22
+
23
+ describe 'test an instance of StructureSearchHit' do
24
+ it 'should create an instance of StructureSearchHit' do
25
+ # uncomment below to test the instance creation
26
+ #expect(instance).to be_instance_of(Cheminee::StructureSearchHit)
27
+ end
28
+ end
29
+
30
+ describe 'test attribute "extra_data"' do
31
+ it 'should work' do
32
+ # assertion here. ref: https://rspec.info/features/3-12/rspec-expectations/built-in-matchers/
33
+ end
34
+ end
35
+
36
+ describe 'test attribute "smiles"' do
37
+ it 'should work' do
38
+ # assertion here. ref: https://rspec.info/features/3-12/rspec-expectations/built-in-matchers/
39
+ end
40
+ end
41
+
42
+ describe 'test attribute "score"' do
43
+ it 'should work' do
44
+ # assertion here. ref: https://rspec.info/features/3-12/rspec-expectations/built-in-matchers/
45
+ end
46
+ end
47
+
48
+ describe 'test attribute "query"' do
49
+ it 'should work' do
50
+ # assertion here. ref: https://rspec.info/features/3-12/rspec-expectations/built-in-matchers/
51
+ end
52
+ end
53
+
54
+ describe 'test attribute "used_tautomers"' do
55
+ it 'should work' do
56
+ # assertion here. ref: https://rspec.info/features/3-12/rspec-expectations/built-in-matchers/
57
+ end
58
+ end
59
+
60
+ end
metadata CHANGED
@@ -1,7 +1,7 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: cheminee
3
3
  version: !ruby/object:Gem::Version
4
- version: 0.1.9
4
+ version: 0.1.10
5
5
  platform: ruby
6
6
  authors:
7
7
  - Xavier Lange
@@ -75,6 +75,8 @@ files:
75
75
  - docs/Schema.md
76
76
  - docs/Smile.md
77
77
  - docs/StandardizedSmile.md
78
+ - docs/StructureResponseError.md
79
+ - docs/StructureSearchHit.md
78
80
  - docs/SubstructureSearchHit.md
79
81
  - git_push.sh
80
82
  - lib/cheminee.rb
@@ -94,11 +96,13 @@ files:
94
96
  - lib/cheminee/models/schema.rb
95
97
  - lib/cheminee/models/smile.rb
96
98
  - lib/cheminee/models/standardized_smile.rb
99
+ - lib/cheminee/models/structure_response_error.rb
100
+ - lib/cheminee/models/structure_search_hit.rb
97
101
  - lib/cheminee/models/substructure_search_hit.rb
98
102
  - lib/cheminee/version.rb
99
103
  - openapi-generator-config.json
100
104
  - openapi.json
101
- - pkg/cheminee-0.1.9.gem
105
+ - pkg/cheminee-0.1.10.gem
102
106
  - spec/api/default_api_spec.rb
103
107
  - spec/api_client_spec.rb
104
108
  - spec/configuration_spec.rb
@@ -114,6 +118,8 @@ files:
114
118
  - spec/models/schema_spec.rb
115
119
  - spec/models/smile_spec.rb
116
120
  - spec/models/standardized_smile_spec.rb
121
+ - spec/models/structure_response_error_spec.rb
122
+ - spec/models/structure_search_hit_spec.rb
117
123
  - spec/models/substructure_search_hit_spec.rb
118
124
  - spec/spec_helper.rb
119
125
  homepage: https://github.com/rdkit-rs/cheminee-ruby
@@ -147,12 +153,14 @@ test_files:
147
153
  - spec/models/post_index_bulk_response_error_spec.rb
148
154
  - spec/models/standardized_smile_spec.rb
149
155
  - spec/models/smile_spec.rb
156
+ - spec/models/structure_response_error_spec.rb
150
157
  - spec/models/get_indexes_response_error_spec.rb
151
158
  - spec/models/bulk_request_spec.rb
152
159
  - spec/models/substructure_search_hit_spec.rb
153
160
  - spec/models/bulk_request_doc_spec.rb
154
161
  - spec/models/post_index_bulk_response_ok_status_spec.rb
155
162
  - spec/models/schema_spec.rb
163
+ - spec/models/structure_search_hit_spec.rb
156
164
  - spec/models/list_index_response_err_spec.rb
157
165
  - spec/models/index_meta_spec.rb
158
166
  - spec/models/create_index_error_spec.rb
Binary file