cheminee 0.1.9 → 0.1.10
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/Gemfile.lock +1 -1
- data/README.md +6 -5
- data/docs/DefaultApi.md +12 -8
- data/docs/StructureResponseError.md +18 -0
- data/docs/StructureSearchHit.md +26 -0
- data/lib/cheminee/api/default_api.rb +15 -12
- data/lib/cheminee/models/structure_response_error.rb +221 -0
- data/lib/cheminee/models/structure_search_hit.rb +281 -0
- data/lib/cheminee/version.rb +1 -1
- data/lib/cheminee.rb +2 -1
- data/pkg/cheminee-0.1.10.gem +0 -0
- data/spec/models/structure_response_error_spec.rb +36 -0
- data/spec/models/structure_search_hit_spec.rb +60 -0
- metadata +10 -2
- data/pkg/cheminee-0.1.9.gem +0 -0
checksums.yaml
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: babed28d6a423f6487d1321876412e26680a17cb8fca114e4f96040170fbcc3a
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data.tar.gz: c7950e6e3faf58618490c1eec9ae3d5feba74261d89cc1798bd92ad3912be64a
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SHA512:
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metadata.gz:
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metadata.gz: 3528480bc7a56bd70fbe6910ae701e7848b5628d062d8d47bd4e73bc774cbe7c89987f4f96db963e76b28d44901a68a197808e61a144a10c684b00b7202e16e8
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data.tar.gz: 0c43d3b518e9cde72fdf478b1d0305646243f22a15fd2432d1192d1fd08ed7f81de98f8d7e0cea218bc28f72fc9fb09b9f6fcdd8e6fcf702dfc1d4b6d08bb45c
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data/Gemfile.lock
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data/README.md
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@@ -7,7 +7,7 @@ Cheminée: The Chemical Structure Search Engine
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This SDK is automatically generated by the [OpenAPI Generator](https://openapi-generator.tech) project:
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- API version: 1.0
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- Package version: 0.1.
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- Package version: 0.1.10
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- Build package: org.openapitools.codegen.languages.RubyClientCodegen
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For more information, please visit [https://github.com/rdkit-rs/cheminee](https://github.com/rdkit-rs/cheminee)
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@@ -24,16 +24,16 @@ gem build cheminee.gemspec
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Then either install the gem locally:
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```shell
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gem install ./cheminee-0.1.
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gem install ./cheminee-0.1.10.gem
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```
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(for development, run `gem install --dev ./cheminee-0.1.
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(for development, run `gem install --dev ./cheminee-0.1.10.gem` to install the development dependencies)
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or publish the gem to a gem hosting service, e.g. [RubyGems](https://rubygems.org/).
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Finally add this to the Gemfile:
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gem 'cheminee', '~> 0.1.
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gem 'cheminee', '~> 0.1.10'
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### Install from Git
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- [Cheminee::Schema](docs/Schema.md)
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- [Cheminee::Smile](docs/Smile.md)
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- [Cheminee::StandardizedSmile](docs/StandardizedSmile.md)
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- [Cheminee::
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- [Cheminee::StructureResponseError](docs/StructureResponseError.md)
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- [Cheminee::StructureSearchHit](docs/StructureSearchHit.md)
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## Documentation for Authorization
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data/docs/DefaultApi.md
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## v1_indexes_index_search_substructure_get
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> <Array<
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> <Array<StructureSearchHit>> v1_indexes_index_search_substructure_get(index, smile, opts)
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Perform substructure search against index
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@@ -280,11 +280,14 @@ require 'cheminee'
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api_instance = Cheminee::DefaultApi.new
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index = 'index_example' # String |
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-
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smile = 'smile_example' # String |
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opts = {
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limit: 'limit_example' # String |
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}
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begin
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# Perform substructure search against index
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result = api_instance.v1_indexes_index_search_substructure_get(index,
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result = api_instance.v1_indexes_index_search_substructure_get(index, smile, opts)
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p result
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rescue Cheminee::ApiError => e
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puts "Error when calling DefaultApi->v1_indexes_index_search_substructure_get: #{e}"
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This returns an Array which contains the response data, status code and headers.
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> <Array(<Array<
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> <Array(<Array<StructureSearchHit>>, Integer, Hash)> v1_indexes_index_search_substructure_get_with_http_info(index, smile, opts)
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```ruby
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begin
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# Perform substructure search against index
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data, status_code, headers = api_instance.v1_indexes_index_search_substructure_get_with_http_info(index,
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data, status_code, headers = api_instance.v1_indexes_index_search_substructure_get_with_http_info(index, smile, opts)
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p status_code # => 2xx
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p headers # => { ... }
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p data # => <Array<
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p data # => <Array<StructureSearchHit>>
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rescue Cheminee::ApiError => e
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puts "Error when calling DefaultApi->v1_indexes_index_search_substructure_get_with_http_info: #{e}"
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end
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| Name | Type | Description | Notes |
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| ---- | ---- | ----------- | ----- |
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| **index** | **String** | | |
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| **
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| **smile** | **String** | | |
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| **limit** | **String** | | [optional] |
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### Return type
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[**Array<
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[**Array<StructureSearchHit>**](StructureSearchHit.md)
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### Authorization
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# Cheminee::StructureResponseError
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## Properties
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| Name | Type | Description | Notes |
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| ---- | ---- | ----------- | ----- |
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| **error** | **String** | | |
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## Example
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```ruby
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require 'cheminee'
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instance = Cheminee::StructureResponseError.new(
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error: null
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)
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```
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# Cheminee::StructureSearchHit
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## Properties
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| Name | Type | Description | Notes |
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| ---- | ---- | ----------- | ----- |
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| **extra_data** | **Object** | | |
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| **smiles** | **String** | | |
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| **score** | **Float** | | |
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| **query** | **String** | | |
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| **used_tautomers** | **Boolean** | | |
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## Example
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```ruby
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require 'cheminee'
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instance = Cheminee::StructureSearchHit.new(
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extra_data: null,
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smiles: null,
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score: null,
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query: null,
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used_tautomers: null
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)
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```
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# Perform substructure search against index
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# @param index [String]
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# @param
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# @param smile [String]
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# @param [Hash] opts the optional parameters
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# @
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# @option opts [String] :limit
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# @return [Array<StructureSearchHit>]
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def v1_indexes_index_search_substructure_get(index, smile, opts = {})
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data, _status_code, _headers = v1_indexes_index_search_substructure_get_with_http_info(index, smile, opts)
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data
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end
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# Perform substructure search against index
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# @param index [String]
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# @param
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# @param smile [String]
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# @param [Hash] opts the optional parameters
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# @
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# @option opts [String] :limit
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# @return [Array<(Array<StructureSearchHit>, Integer, Hash)>] Array<StructureSearchHit> data, response status code and response headers
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def v1_indexes_index_search_substructure_get_with_http_info(index, smile, opts = {})
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if @api_client.config.debugging
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@api_client.config.logger.debug 'Calling API: DefaultApi.v1_indexes_index_search_substructure_get ...'
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end
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if @api_client.config.client_side_validation && index.nil?
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fail ArgumentError, "Missing the required parameter 'index' when calling DefaultApi.v1_indexes_index_search_substructure_get"
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end
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# verify the required parameter '
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if @api_client.config.client_side_validation &&
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fail ArgumentError, "Missing the required parameter '
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# verify the required parameter 'smile' is set
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if @api_client.config.client_side_validation && smile.nil?
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fail ArgumentError, "Missing the required parameter 'smile' when calling DefaultApi.v1_indexes_index_search_substructure_get"
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end
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# resource path
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local_var_path = '/v1/indexes/{index}/search/substructure'.sub('{' + 'index' + '}', CGI.escape(index.to_s))
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# query parameters
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query_params = opts[:query_params] || {}
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query_params[:'
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query_params[:'smile'] = smile
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query_params[:'limit'] = opts[:'limit'] if !opts[:'limit'].nil?
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# header parameters
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header_params = opts[:header_params] || {}
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post_body = opts[:debug_body]
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# return_type
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return_type = opts[:debug_return_type] || 'Array<
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return_type = opts[:debug_return_type] || 'Array<StructureSearchHit>'
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# auth_names
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auth_names = opts[:debug_auth_names] || []
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=begin
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#Cheminée
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#Cheminée: The Chemical Structure Search Engine
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The version of the OpenAPI document: 1.0
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Generated by: https://openapi-generator.tech
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OpenAPI Generator version: 7.1.0-SNAPSHOT
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=end
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require 'date'
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require 'time'
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module Cheminee
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class StructureResponseError
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attr_accessor :error
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# Attribute mapping from ruby-style variable name to JSON key.
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def self.attribute_map
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{
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:'error' => :'error'
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}
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end
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# Returns all the JSON keys this model knows about
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def self.acceptable_attributes
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attribute_map.values
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end
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# Attribute type mapping.
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def self.openapi_types
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{
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:'error' => :'String'
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}
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end
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# List of attributes with nullable: true
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def self.openapi_nullable
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Set.new([
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])
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end
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# Initializes the object
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# @param [Hash] attributes Model attributes in the form of hash
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def initialize(attributes = {})
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if (!attributes.is_a?(Hash))
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fail ArgumentError, "The input argument (attributes) must be a hash in `Cheminee::StructureResponseError` initialize method"
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end
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# check to see if the attribute exists and convert string to symbol for hash key
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attributes = attributes.each_with_object({}) { |(k, v), h|
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if (!self.class.attribute_map.key?(k.to_sym))
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fail ArgumentError, "`#{k}` is not a valid attribute in `Cheminee::StructureResponseError`. Please check the name to make sure it's valid. List of attributes: " + self.class.attribute_map.keys.inspect
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end
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h[k.to_sym] = v
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}
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if attributes.key?(:'error')
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self.error = attributes[:'error']
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else
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self.error = nil
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end
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end
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# Show invalid properties with the reasons. Usually used together with valid?
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# @return Array for valid properties with the reasons
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def list_invalid_properties
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warn '[DEPRECATED] the `list_invalid_properties` method is obsolete'
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invalid_properties = Array.new
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if @error.nil?
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invalid_properties.push('invalid value for "error", error cannot be nil.')
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end
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invalid_properties
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end
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# Check to see if the all the properties in the model are valid
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# @return true if the model is valid
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def valid?
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warn '[DEPRECATED] the `valid?` method is obsolete'
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return false if @error.nil?
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true
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end
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# Checks equality by comparing each attribute.
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# @param [Object] Object to be compared
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def ==(o)
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return true if self.equal?(o)
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self.class == o.class &&
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error == o.error
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end
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# @see the `==` method
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# @param [Object] Object to be compared
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def eql?(o)
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self == o
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end
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# Calculates hash code according to all attributes.
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# @return [Integer] Hash code
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def hash
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[error].hash
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end
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# Builds the object from hash
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# @param [Hash] attributes Model attributes in the form of hash
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# @return [Object] Returns the model itself
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def self.build_from_hash(attributes)
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return nil unless attributes.is_a?(Hash)
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attributes = attributes.transform_keys(&:to_sym)
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transformed_hash = {}
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openapi_types.each_pair do |key, type|
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if attributes.key?(attribute_map[key]) && attributes[attribute_map[key]].nil?
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transformed_hash["#{key}"] = nil
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elsif type =~ /\AArray<(.*)>/i
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# check to ensure the input is an array given that the attribute
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# is documented as an array but the input is not
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if attributes[attribute_map[key]].is_a?(Array)
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transformed_hash["#{key}"] = attributes[attribute_map[key]].map { |v| _deserialize($1, v) }
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end
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elsif !attributes[attribute_map[key]].nil?
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transformed_hash["#{key}"] = _deserialize(type, attributes[attribute_map[key]])
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end
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end
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new(transformed_hash)
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end
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# Deserializes the data based on type
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# @param string type Data type
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# @param string value Value to be deserialized
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# @return [Object] Deserialized data
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def self._deserialize(type, value)
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case type.to_sym
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when :Time
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value.to_s
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value.to_i
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when :Float
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value.to_f
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when :Boolean
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if value.to_s =~ /\A(true|t|yes|y|1)\z/i
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true
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false
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end
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when :Object
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value
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value.map { |v| _deserialize(inner_type, v) }
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else # model
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klass = Cheminee.const_get(type)
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def to_s
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to_hash.to_s
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end
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# @return [Hash] Returns the object in the form of hash
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def to_body
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to_hash
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end
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hash = {}
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if value.nil?
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is_nullable = self.class.openapi_nullable.include?(attr)
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next if !is_nullable || (is_nullable && !instance_variable_defined?(:"@#{attr}"))
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hash[param] = _to_hash(value)
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hash
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# Outputs non-array value in the form of hash
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# @param [Object] value Any valid value
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def _to_hash(value)
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if value.is_a?(Array)
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value.compact.map { |v| _to_hash(v) }
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elsif value.is_a?(Hash)
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{}.tap do |hash|
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value.each { |k, v| hash[k] = _to_hash(v) }
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end
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elsif value.respond_to? :to_hash
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value.to_hash
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value
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=begin
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#Cheminée
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#Cheminée: The Chemical Structure Search Engine
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The version of the OpenAPI document: 1.0
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Generated by: https://openapi-generator.tech
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OpenAPI Generator version: 7.1.0-SNAPSHOT
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=end
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require 'date'
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require 'time'
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module Cheminee
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class StructureSearchHit
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attr_accessor :extra_data
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attr_accessor :smiles
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attr_accessor :score
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attr_accessor :query
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attr_accessor :used_tautomers
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# Attribute mapping from ruby-style variable name to JSON key.
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def self.attribute_map
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{
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:'extra_data' => :'extra_data',
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:'smiles' => :'smiles',
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:'score' => :'score',
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:'query' => :'query',
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:'used_tautomers' => :'used_tautomers'
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}
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end
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# Returns all the JSON keys this model knows about
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def self.acceptable_attributes
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attribute_map.values
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end
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# Attribute type mapping.
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def self.openapi_types
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{
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:'extra_data' => :'Object',
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:'smiles' => :'String',
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:'score' => :'Float',
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:'query' => :'String',
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:'used_tautomers' => :'Boolean'
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}
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end
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# List of attributes with nullable: true
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def self.openapi_nullable
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Set.new([
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:'extra_data',
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+
])
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end
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# Initializes the object
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# @param [Hash] attributes Model attributes in the form of hash
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+
def initialize(attributes = {})
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+
if (!attributes.is_a?(Hash))
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fail ArgumentError, "The input argument (attributes) must be a hash in `Cheminee::StructureSearchHit` initialize method"
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+
end
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+
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+
# check to see if the attribute exists and convert string to symbol for hash key
|
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|
+
attributes = attributes.each_with_object({}) { |(k, v), h|
|
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|
+
if (!self.class.attribute_map.key?(k.to_sym))
|
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+
fail ArgumentError, "`#{k}` is not a valid attribute in `Cheminee::StructureSearchHit`. Please check the name to make sure it's valid. List of attributes: " + self.class.attribute_map.keys.inspect
|
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+
end
|
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+
h[k.to_sym] = v
|
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|
+
}
|
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|
+
|
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|
+
if attributes.key?(:'extra_data')
|
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|
+
self.extra_data = attributes[:'extra_data']
|
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|
+
else
|
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|
+
self.extra_data = nil
|
81
|
+
end
|
82
|
+
|
83
|
+
if attributes.key?(:'smiles')
|
84
|
+
self.smiles = attributes[:'smiles']
|
85
|
+
else
|
86
|
+
self.smiles = nil
|
87
|
+
end
|
88
|
+
|
89
|
+
if attributes.key?(:'score')
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+
self.score = attributes[:'score']
|
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|
+
else
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+
self.score = nil
|
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+
end
|
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+
|
95
|
+
if attributes.key?(:'query')
|
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|
+
self.query = attributes[:'query']
|
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|
+
else
|
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+
self.query = nil
|
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+
end
|
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+
|
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+
if attributes.key?(:'used_tautomers')
|
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+
self.used_tautomers = attributes[:'used_tautomers']
|
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|
+
else
|
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|
+
self.used_tautomers = nil
|
105
|
+
end
|
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|
+
end
|
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|
+
|
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|
+
# Show invalid properties with the reasons. Usually used together with valid?
|
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|
+
# @return Array for valid properties with the reasons
|
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|
+
def list_invalid_properties
|
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|
+
warn '[DEPRECATED] the `list_invalid_properties` method is obsolete'
|
112
|
+
invalid_properties = Array.new
|
113
|
+
if @smiles.nil?
|
114
|
+
invalid_properties.push('invalid value for "smiles", smiles cannot be nil.')
|
115
|
+
end
|
116
|
+
|
117
|
+
if @score.nil?
|
118
|
+
invalid_properties.push('invalid value for "score", score cannot be nil.')
|
119
|
+
end
|
120
|
+
|
121
|
+
if @query.nil?
|
122
|
+
invalid_properties.push('invalid value for "query", query cannot be nil.')
|
123
|
+
end
|
124
|
+
|
125
|
+
if @used_tautomers.nil?
|
126
|
+
invalid_properties.push('invalid value for "used_tautomers", used_tautomers cannot be nil.')
|
127
|
+
end
|
128
|
+
|
129
|
+
invalid_properties
|
130
|
+
end
|
131
|
+
|
132
|
+
# Check to see if the all the properties in the model are valid
|
133
|
+
# @return true if the model is valid
|
134
|
+
def valid?
|
135
|
+
warn '[DEPRECATED] the `valid?` method is obsolete'
|
136
|
+
return false if @smiles.nil?
|
137
|
+
return false if @score.nil?
|
138
|
+
return false if @query.nil?
|
139
|
+
return false if @used_tautomers.nil?
|
140
|
+
true
|
141
|
+
end
|
142
|
+
|
143
|
+
# Checks equality by comparing each attribute.
|
144
|
+
# @param [Object] Object to be compared
|
145
|
+
def ==(o)
|
146
|
+
return true if self.equal?(o)
|
147
|
+
self.class == o.class &&
|
148
|
+
extra_data == o.extra_data &&
|
149
|
+
smiles == o.smiles &&
|
150
|
+
score == o.score &&
|
151
|
+
query == o.query &&
|
152
|
+
used_tautomers == o.used_tautomers
|
153
|
+
end
|
154
|
+
|
155
|
+
# @see the `==` method
|
156
|
+
# @param [Object] Object to be compared
|
157
|
+
def eql?(o)
|
158
|
+
self == o
|
159
|
+
end
|
160
|
+
|
161
|
+
# Calculates hash code according to all attributes.
|
162
|
+
# @return [Integer] Hash code
|
163
|
+
def hash
|
164
|
+
[extra_data, smiles, score, query, used_tautomers].hash
|
165
|
+
end
|
166
|
+
|
167
|
+
# Builds the object from hash
|
168
|
+
# @param [Hash] attributes Model attributes in the form of hash
|
169
|
+
# @return [Object] Returns the model itself
|
170
|
+
def self.build_from_hash(attributes)
|
171
|
+
return nil unless attributes.is_a?(Hash)
|
172
|
+
attributes = attributes.transform_keys(&:to_sym)
|
173
|
+
transformed_hash = {}
|
174
|
+
openapi_types.each_pair do |key, type|
|
175
|
+
if attributes.key?(attribute_map[key]) && attributes[attribute_map[key]].nil?
|
176
|
+
transformed_hash["#{key}"] = nil
|
177
|
+
elsif type =~ /\AArray<(.*)>/i
|
178
|
+
# check to ensure the input is an array given that the attribute
|
179
|
+
# is documented as an array but the input is not
|
180
|
+
if attributes[attribute_map[key]].is_a?(Array)
|
181
|
+
transformed_hash["#{key}"] = attributes[attribute_map[key]].map { |v| _deserialize($1, v) }
|
182
|
+
end
|
183
|
+
elsif !attributes[attribute_map[key]].nil?
|
184
|
+
transformed_hash["#{key}"] = _deserialize(type, attributes[attribute_map[key]])
|
185
|
+
end
|
186
|
+
end
|
187
|
+
new(transformed_hash)
|
188
|
+
end
|
189
|
+
|
190
|
+
# Deserializes the data based on type
|
191
|
+
# @param string type Data type
|
192
|
+
# @param string value Value to be deserialized
|
193
|
+
# @return [Object] Deserialized data
|
194
|
+
def self._deserialize(type, value)
|
195
|
+
case type.to_sym
|
196
|
+
when :Time
|
197
|
+
Time.parse(value)
|
198
|
+
when :Date
|
199
|
+
Date.parse(value)
|
200
|
+
when :String
|
201
|
+
value.to_s
|
202
|
+
when :Integer
|
203
|
+
value.to_i
|
204
|
+
when :Float
|
205
|
+
value.to_f
|
206
|
+
when :Boolean
|
207
|
+
if value.to_s =~ /\A(true|t|yes|y|1)\z/i
|
208
|
+
true
|
209
|
+
else
|
210
|
+
false
|
211
|
+
end
|
212
|
+
when :Object
|
213
|
+
# generic object (usually a Hash), return directly
|
214
|
+
value
|
215
|
+
when /\AArray<(?<inner_type>.+)>\z/
|
216
|
+
inner_type = Regexp.last_match[:inner_type]
|
217
|
+
value.map { |v| _deserialize(inner_type, v) }
|
218
|
+
when /\AHash<(?<k_type>.+?), (?<v_type>.+)>\z/
|
219
|
+
k_type = Regexp.last_match[:k_type]
|
220
|
+
v_type = Regexp.last_match[:v_type]
|
221
|
+
{}.tap do |hash|
|
222
|
+
value.each do |k, v|
|
223
|
+
hash[_deserialize(k_type, k)] = _deserialize(v_type, v)
|
224
|
+
end
|
225
|
+
end
|
226
|
+
else # model
|
227
|
+
# models (e.g. Pet) or oneOf
|
228
|
+
klass = Cheminee.const_get(type)
|
229
|
+
klass.respond_to?(:openapi_one_of) ? klass.build(value) : klass.build_from_hash(value)
|
230
|
+
end
|
231
|
+
end
|
232
|
+
|
233
|
+
# Returns the string representation of the object
|
234
|
+
# @return [String] String presentation of the object
|
235
|
+
def to_s
|
236
|
+
to_hash.to_s
|
237
|
+
end
|
238
|
+
|
239
|
+
# to_body is an alias to to_hash (backward compatibility)
|
240
|
+
# @return [Hash] Returns the object in the form of hash
|
241
|
+
def to_body
|
242
|
+
to_hash
|
243
|
+
end
|
244
|
+
|
245
|
+
# Returns the object in the form of hash
|
246
|
+
# @return [Hash] Returns the object in the form of hash
|
247
|
+
def to_hash
|
248
|
+
hash = {}
|
249
|
+
self.class.attribute_map.each_pair do |attr, param|
|
250
|
+
value = self.send(attr)
|
251
|
+
if value.nil?
|
252
|
+
is_nullable = self.class.openapi_nullable.include?(attr)
|
253
|
+
next if !is_nullable || (is_nullable && !instance_variable_defined?(:"@#{attr}"))
|
254
|
+
end
|
255
|
+
|
256
|
+
hash[param] = _to_hash(value)
|
257
|
+
end
|
258
|
+
hash
|
259
|
+
end
|
260
|
+
|
261
|
+
# Outputs non-array value in the form of hash
|
262
|
+
# For object, use to_hash. Otherwise, just return the value
|
263
|
+
# @param [Object] value Any valid value
|
264
|
+
# @return [Hash] Returns the value in the form of hash
|
265
|
+
def _to_hash(value)
|
266
|
+
if value.is_a?(Array)
|
267
|
+
value.compact.map { |v| _to_hash(v) }
|
268
|
+
elsif value.is_a?(Hash)
|
269
|
+
{}.tap do |hash|
|
270
|
+
value.each { |k, v| hash[k] = _to_hash(v) }
|
271
|
+
end
|
272
|
+
elsif value.respond_to? :to_hash
|
273
|
+
value.to_hash
|
274
|
+
else
|
275
|
+
value
|
276
|
+
end
|
277
|
+
end
|
278
|
+
|
279
|
+
end
|
280
|
+
|
281
|
+
end
|
data/lib/cheminee/version.rb
CHANGED
data/lib/cheminee.rb
CHANGED
@@ -29,7 +29,8 @@ require 'cheminee/models/post_index_bulk_response_ok_status'
|
|
29
29
|
require 'cheminee/models/schema'
|
30
30
|
require 'cheminee/models/smile'
|
31
31
|
require 'cheminee/models/standardized_smile'
|
32
|
-
require 'cheminee/models/
|
32
|
+
require 'cheminee/models/structure_response_error'
|
33
|
+
require 'cheminee/models/structure_search_hit'
|
33
34
|
|
34
35
|
# APIs
|
35
36
|
require 'cheminee/api/default_api'
|
Binary file
|
@@ -0,0 +1,36 @@
|
|
1
|
+
=begin
|
2
|
+
#Cheminée
|
3
|
+
|
4
|
+
#Cheminée: The Chemical Structure Search Engine
|
5
|
+
|
6
|
+
The version of the OpenAPI document: 1.0
|
7
|
+
|
8
|
+
Generated by: https://openapi-generator.tech
|
9
|
+
OpenAPI Generator version: 7.1.0-SNAPSHOT
|
10
|
+
|
11
|
+
=end
|
12
|
+
|
13
|
+
require 'spec_helper'
|
14
|
+
require 'json'
|
15
|
+
require 'date'
|
16
|
+
|
17
|
+
# Unit tests for Cheminee::StructureResponseError
|
18
|
+
# Automatically generated by openapi-generator (https://openapi-generator.tech)
|
19
|
+
# Please update as you see appropriate
|
20
|
+
describe Cheminee::StructureResponseError do
|
21
|
+
let(:instance) { Cheminee::StructureResponseError.new }
|
22
|
+
|
23
|
+
describe 'test an instance of StructureResponseError' do
|
24
|
+
it 'should create an instance of StructureResponseError' do
|
25
|
+
# uncomment below to test the instance creation
|
26
|
+
#expect(instance).to be_instance_of(Cheminee::StructureResponseError)
|
27
|
+
end
|
28
|
+
end
|
29
|
+
|
30
|
+
describe 'test attribute "error"' do
|
31
|
+
it 'should work' do
|
32
|
+
# assertion here. ref: https://rspec.info/features/3-12/rspec-expectations/built-in-matchers/
|
33
|
+
end
|
34
|
+
end
|
35
|
+
|
36
|
+
end
|
@@ -0,0 +1,60 @@
|
|
1
|
+
=begin
|
2
|
+
#Cheminée
|
3
|
+
|
4
|
+
#Cheminée: The Chemical Structure Search Engine
|
5
|
+
|
6
|
+
The version of the OpenAPI document: 1.0
|
7
|
+
|
8
|
+
Generated by: https://openapi-generator.tech
|
9
|
+
OpenAPI Generator version: 7.1.0-SNAPSHOT
|
10
|
+
|
11
|
+
=end
|
12
|
+
|
13
|
+
require 'spec_helper'
|
14
|
+
require 'json'
|
15
|
+
require 'date'
|
16
|
+
|
17
|
+
# Unit tests for Cheminee::StructureSearchHit
|
18
|
+
# Automatically generated by openapi-generator (https://openapi-generator.tech)
|
19
|
+
# Please update as you see appropriate
|
20
|
+
describe Cheminee::StructureSearchHit do
|
21
|
+
let(:instance) { Cheminee::StructureSearchHit.new }
|
22
|
+
|
23
|
+
describe 'test an instance of StructureSearchHit' do
|
24
|
+
it 'should create an instance of StructureSearchHit' do
|
25
|
+
# uncomment below to test the instance creation
|
26
|
+
#expect(instance).to be_instance_of(Cheminee::StructureSearchHit)
|
27
|
+
end
|
28
|
+
end
|
29
|
+
|
30
|
+
describe 'test attribute "extra_data"' do
|
31
|
+
it 'should work' do
|
32
|
+
# assertion here. ref: https://rspec.info/features/3-12/rspec-expectations/built-in-matchers/
|
33
|
+
end
|
34
|
+
end
|
35
|
+
|
36
|
+
describe 'test attribute "smiles"' do
|
37
|
+
it 'should work' do
|
38
|
+
# assertion here. ref: https://rspec.info/features/3-12/rspec-expectations/built-in-matchers/
|
39
|
+
end
|
40
|
+
end
|
41
|
+
|
42
|
+
describe 'test attribute "score"' do
|
43
|
+
it 'should work' do
|
44
|
+
# assertion here. ref: https://rspec.info/features/3-12/rspec-expectations/built-in-matchers/
|
45
|
+
end
|
46
|
+
end
|
47
|
+
|
48
|
+
describe 'test attribute "query"' do
|
49
|
+
it 'should work' do
|
50
|
+
# assertion here. ref: https://rspec.info/features/3-12/rspec-expectations/built-in-matchers/
|
51
|
+
end
|
52
|
+
end
|
53
|
+
|
54
|
+
describe 'test attribute "used_tautomers"' do
|
55
|
+
it 'should work' do
|
56
|
+
# assertion here. ref: https://rspec.info/features/3-12/rspec-expectations/built-in-matchers/
|
57
|
+
end
|
58
|
+
end
|
59
|
+
|
60
|
+
end
|
metadata
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: cheminee
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 0.1.
|
4
|
+
version: 0.1.10
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Xavier Lange
|
@@ -75,6 +75,8 @@ files:
|
|
75
75
|
- docs/Schema.md
|
76
76
|
- docs/Smile.md
|
77
77
|
- docs/StandardizedSmile.md
|
78
|
+
- docs/StructureResponseError.md
|
79
|
+
- docs/StructureSearchHit.md
|
78
80
|
- docs/SubstructureSearchHit.md
|
79
81
|
- git_push.sh
|
80
82
|
- lib/cheminee.rb
|
@@ -94,11 +96,13 @@ files:
|
|
94
96
|
- lib/cheminee/models/schema.rb
|
95
97
|
- lib/cheminee/models/smile.rb
|
96
98
|
- lib/cheminee/models/standardized_smile.rb
|
99
|
+
- lib/cheminee/models/structure_response_error.rb
|
100
|
+
- lib/cheminee/models/structure_search_hit.rb
|
97
101
|
- lib/cheminee/models/substructure_search_hit.rb
|
98
102
|
- lib/cheminee/version.rb
|
99
103
|
- openapi-generator-config.json
|
100
104
|
- openapi.json
|
101
|
-
- pkg/cheminee-0.1.
|
105
|
+
- pkg/cheminee-0.1.10.gem
|
102
106
|
- spec/api/default_api_spec.rb
|
103
107
|
- spec/api_client_spec.rb
|
104
108
|
- spec/configuration_spec.rb
|
@@ -114,6 +118,8 @@ files:
|
|
114
118
|
- spec/models/schema_spec.rb
|
115
119
|
- spec/models/smile_spec.rb
|
116
120
|
- spec/models/standardized_smile_spec.rb
|
121
|
+
- spec/models/structure_response_error_spec.rb
|
122
|
+
- spec/models/structure_search_hit_spec.rb
|
117
123
|
- spec/models/substructure_search_hit_spec.rb
|
118
124
|
- spec/spec_helper.rb
|
119
125
|
homepage: https://github.com/rdkit-rs/cheminee-ruby
|
@@ -147,12 +153,14 @@ test_files:
|
|
147
153
|
- spec/models/post_index_bulk_response_error_spec.rb
|
148
154
|
- spec/models/standardized_smile_spec.rb
|
149
155
|
- spec/models/smile_spec.rb
|
156
|
+
- spec/models/structure_response_error_spec.rb
|
150
157
|
- spec/models/get_indexes_response_error_spec.rb
|
151
158
|
- spec/models/bulk_request_spec.rb
|
152
159
|
- spec/models/substructure_search_hit_spec.rb
|
153
160
|
- spec/models/bulk_request_doc_spec.rb
|
154
161
|
- spec/models/post_index_bulk_response_ok_status_spec.rb
|
155
162
|
- spec/models/schema_spec.rb
|
163
|
+
- spec/models/structure_search_hit_spec.rb
|
156
164
|
- spec/models/list_index_response_err_spec.rb
|
157
165
|
- spec/models/index_meta_spec.rb
|
158
166
|
- spec/models/create_index_error_spec.rb
|
data/pkg/cheminee-0.1.9.gem
DELETED
Binary file
|