cheminee 0.1.35 → 0.1.37

checksums.yaml

@@ -1,7 +1,7 @@
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data/Gemfile.lock

@@ -1,7 +1,7 @@
 PATH
   remote: .
   specs:
-    cheminee (0.1.35)
+    cheminee (0.1.37)
       faraday (>= 1.0.1, < 3.0)
       faraday-multipart
       marcel

data/README.md

@@ -7,7 +7,7 @@ Cheminée: The Chemical Structure Search Engine
 This SDK is automatically generated by the [OpenAPI Generator](https://openapi-generator.tech) project:
 
 - API version: 1.0
-- Package version: 0.1.35
+- Package version: 0.1.37
 - Generator version: 7.9.0-SNAPSHOT
 - Build package: org.openapitools.codegen.languages.RubyClientCodegen
 For more information, please visit [https://github.com/rdkit-rs/cheminee](https://github.com/rdkit-rs/cheminee)
@@ -25,16 +25,16 @@ gem build cheminee.gemspec
 Then either install the gem locally:
 
 ```shell
-gem install ./cheminee-0.1.35.gem
+gem install ./cheminee-0.1.37.gem
 ```
 
-(for development, run `gem install --dev ./cheminee-0.1.35.gem` to install the development dependencies)
+(for development, run `gem install --dev ./cheminee-0.1.37.gem` to install the development dependencies)
 
 or publish the gem to a gem hosting service, e.g. [RubyGems](https://rubygems.org/).
 
 Finally add this to the Gemfile:
 
-    gem 'cheminee', '~> 0.1.35'
+    gem 'cheminee', '~> 0.1.37'
 
 ### Install from Git
 
@@ -85,6 +85,7 @@ Class | Method | HTTP request | Description
 *Cheminee::DefaultApi* | [**v1_indexes_index_bulk_index_post**](docs/DefaultApi.md#v1_indexes_index_bulk_index_post) | **POST** /v1/indexes/{index}/bulk_index | Index a list of SMILES and associated, free-form JSON attributes which are indexed and searchable
 *Cheminee::DefaultApi* | [**v1_indexes_index_delete**](docs/DefaultApi.md#v1_indexes_index_delete) | **DELETE** /v1/indexes/{index} | Delete an index
 *Cheminee::DefaultApi* | [**v1_indexes_index_get**](docs/DefaultApi.md#v1_indexes_index_get) | **GET** /v1/indexes/{index} | Get extended information about an index
+*Cheminee::DefaultApi* | [**v1_indexes_index_merge_post**](docs/DefaultApi.md#v1_indexes_index_merge_post) | **POST** /v1/indexes/{index}/merge | Merge segments inside the index
 *Cheminee::DefaultApi* | [**v1_indexes_index_post**](docs/DefaultApi.md#v1_indexes_index_post) | **POST** /v1/indexes/{index} | Create an index
 *Cheminee::DefaultApi* | [**v1_indexes_index_search_basic_get**](docs/DefaultApi.md#v1_indexes_index_search_basic_get) | **GET** /v1/indexes/{index}/search/basic | Perform basic query search against index
 *Cheminee::DefaultApi* | [**v1_indexes_index_search_identity_get**](docs/DefaultApi.md#v1_indexes_index_search_identity_get) | **GET** /v1/indexes/{index}/search/identity | Perform identity search (i.e. exact match) against index

data/docs/DefaultApi.md

@@ -11,6 +11,7 @@ All URIs are relative to *http://localhost:4001/api*
 | [**v1_indexes_index_bulk_index_post**](DefaultApi.md#v1_indexes_index_bulk_index_post) | **POST** /v1/indexes/{index}/bulk_index | Index a list of SMILES and associated, free-form JSON attributes which are indexed and searchable |
 | [**v1_indexes_index_delete**](DefaultApi.md#v1_indexes_index_delete) | **DELETE** /v1/indexes/{index} | Delete an index |
 | [**v1_indexes_index_get**](DefaultApi.md#v1_indexes_index_get) | **GET** /v1/indexes/{index} | Get extended information about an index |
+| [**v1_indexes_index_merge_post**](DefaultApi.md#v1_indexes_index_merge_post) | **POST** /v1/indexes/{index}/merge | Merge segments inside the index |
 | [**v1_indexes_index_post**](DefaultApi.md#v1_indexes_index_post) | **POST** /v1/indexes/{index} | Create an index |
 | [**v1_indexes_index_search_basic_get**](DefaultApi.md#v1_indexes_index_search_basic_get) | **GET** /v1/indexes/{index}/search/basic | Perform basic query search against index |
 | [**v1_indexes_index_search_identity_get**](DefaultApi.md#v1_indexes_index_search_identity_get) | **GET** /v1/indexes/{index}/search/identity | Perform identity search (i.e. exact match) against index |
@@ -457,9 +458,71 @@ No authorization required
 - **Accept**: application/json
 
 
+## v1_indexes_index_merge_post
+
+> String v1_indexes_index_merge_post(index)
+
+Merge segments inside the index
+
+### Examples
+
+```ruby
+require 'time'
+require 'cheminee'
+
+api_instance = Cheminee::DefaultApi.new
+index = 'index_example' # String | 
+
+begin
+  # Merge segments inside the index
+  result = api_instance.v1_indexes_index_merge_post(index)
+  p result
+rescue Cheminee::ApiError => e
+  puts "Error when calling DefaultApi->v1_indexes_index_merge_post: #{e}"
+end
+```
+
+#### Using the v1_indexes_index_merge_post_with_http_info variant
+
+This returns an Array which contains the response data, status code and headers.
+
+> <Array(String, Integer, Hash)> v1_indexes_index_merge_post_with_http_info(index)
+
+```ruby
+begin
+  # Merge segments inside the index
+  data, status_code, headers = api_instance.v1_indexes_index_merge_post_with_http_info(index)
+  p status_code # => 2xx
+  p headers # => { ... }
+  p data # => String
+rescue Cheminee::ApiError => e
+  puts "Error when calling DefaultApi->v1_indexes_index_merge_post_with_http_info: #{e}"
+end
+```
+
+### Parameters
+
+| Name | Type | Description | Notes |
+| ---- | ---- | ----------- | ----- |
+| **index** | **String** |  |  |
+
+### Return type
+
+**String**
+
+### Authorization
+
+No authorization required
+
+### HTTP request headers
+
+- **Content-Type**: Not defined
+- **Accept**: application/json, application/json; charset=utf-8
+
+
 ## v1_indexes_index_post
 
-> <IndexMeta> v1_indexes_index_post(index, schema, opts)
+> <IndexMeta> v1_indexes_index_post(index, schema)
 
 Create an index
 
@@ -472,13 +535,10 @@ require 'cheminee'
 api_instance = Cheminee::DefaultApi.new
 index = 'index_example' # String | 
 schema = 'schema_example' # String | 
-opts = {
-  sort_by: 'sort_by_example' # String | 
-}
 
 begin
   # Create an index
-  result = api_instance.v1_indexes_index_post(index, schema, opts)
+  result = api_instance.v1_indexes_index_post(index, schema)
   p result
 rescue Cheminee::ApiError => e
   puts "Error when calling DefaultApi->v1_indexes_index_post: #{e}"
@@ -489,12 +549,12 @@ end
 
 This returns an Array which contains the response data, status code and headers.
 
-> <Array(<IndexMeta>, Integer, Hash)> v1_indexes_index_post_with_http_info(index, schema, opts)
+> <Array(<IndexMeta>, Integer, Hash)> v1_indexes_index_post_with_http_info(index, schema)
 
 ```ruby
 begin
   # Create an index
-  data, status_code, headers = api_instance.v1_indexes_index_post_with_http_info(index, schema, opts)
+  data, status_code, headers = api_instance.v1_indexes_index_post_with_http_info(index, schema)
   p status_code # => 2xx
   p headers # => { ... }
   p data # => <IndexMeta>
@@ -509,7 +569,6 @@ end
 | ---- | ---- | ----------- | ----- |
 | **index** | **String** |  |  |
 | **schema** | **String** |  |  |
-| **sort_by** | **String** |  | [optional] |
 
 ### Return type
 
@@ -681,11 +740,11 @@ api_instance = Cheminee::DefaultApi.new
 index = 'index_example' # String | 
 smiles = 'smiles_example' # String | 
 opts = {
-  use_chirality: 'use_chirality_example', # String | 
+  use_chirality: true, # Boolean | 
   result_limit: 56, # Integer | 
   tautomer_limit: 56, # Integer | 
   extra_query: 'extra_query_example', # String | 
-  use_scaffolds: 'use_scaffolds_example' # String | 
+  use_scaffolds: true # Boolean | 
 }
 
 begin
@@ -721,11 +780,11 @@ end
 | ---- | ---- | ----------- | ----- |
 | **index** | **String** |  |  |
 | **smiles** | **String** |  |  |
-| **use_chirality** | **String** |  | [optional] |
+| **use_chirality** | **Boolean** |  | [optional] |
 | **result_limit** | **Integer** |  | [optional] |
 | **tautomer_limit** | **Integer** |  | [optional] |
 | **extra_query** | **String** |  | [optional] |
-| **use_scaffolds** | **String** |  | [optional] |
+| **use_scaffolds** | **Boolean** |  | [optional] |
 
 ### Return type
 

data/docs/QuerySearchHit.md

@@ -4,7 +4,7 @@
 
 | Name | Type | Description | Notes |
 | ---- | ---- | ----------- | ----- |
-| **extra_data** | **String** |  |  |
+| **extra_data** | **Object** |  |  |
 | **smiles** | **String** |  |  |
 | **query** | **String** |  |  |
 

data/docs/StructureSearchHit.md

@@ -4,7 +4,7 @@
 
 | Name | Type | Description | Notes |
 | ---- | ---- | ----------- | ----- |
-| **extra_data** | **String** |  |  |
+| **extra_data** | **Object** |  |  |
 | **smiles** | **String** |  |  |
 | **score** | **Float** |  |  |
 | **query** | **String** |  |  |

data/lib/cheminee/api/default_api.rb

@@ -479,11 +479,71 @@ module Cheminee
       return data, status_code, headers
     end
 
+    # Merge segments inside the index
+    # @param index [String] 
+    # @param [Hash] opts the optional parameters
+    # @return [String]
+    def v1_indexes_index_merge_post(index, opts = {})
+      data, _status_code, _headers = v1_indexes_index_merge_post_with_http_info(index, opts)
+      data
+    end
+
+    # Merge segments inside the index
+    # @param index [String] 
+    # @param [Hash] opts the optional parameters
+    # @return [Array<(String, Integer, Hash)>] String data, response status code and response headers
+    def v1_indexes_index_merge_post_with_http_info(index, opts = {})
+      if @api_client.config.debugging
+        @api_client.config.logger.debug 'Calling API: DefaultApi.v1_indexes_index_merge_post ...'
+      end
+      # verify the required parameter 'index' is set
+      if @api_client.config.client_side_validation && index.nil?
+        fail ArgumentError, "Missing the required parameter 'index' when calling DefaultApi.v1_indexes_index_merge_post"
+      end
+      # resource path
+      local_var_path = '/v1/indexes/{index}/merge'.sub('{' + 'index' + '}', CGI.escape(index.to_s))
+
+      # query parameters
+      query_params = opts[:query_params] || {}
+
+      # header parameters
+      header_params = opts[:header_params] || {}
+      # HTTP header 'Accept' (if needed)
+      header_params['Accept'] = @api_client.select_header_accept(['application/json', 'application/json; charset=utf-8']) unless header_params['Accept']
+
+      # form parameters
+      form_params = opts[:form_params] || {}
+
+      # http body (model)
+      post_body = opts[:debug_body]
+
+      # return_type
+      return_type = opts[:debug_return_type] || 'String'
+
+      # auth_names
+      auth_names = opts[:debug_auth_names] || []
+
+      new_options = opts.merge(
+        :operation => :"DefaultApi.v1_indexes_index_merge_post",
+        :header_params => header_params,
+        :query_params => query_params,
+        :form_params => form_params,
+        :body => post_body,
+        :auth_names => auth_names,
+        :return_type => return_type
+      )
+
+      data, status_code, headers = @api_client.call_api(:POST, local_var_path, new_options)
+      if @api_client.config.debugging
+        @api_client.config.logger.debug "API called: DefaultApi#v1_indexes_index_merge_post\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}"
+      end
+      return data, status_code, headers
+    end
+
     # Create an index
     # @param index [String] 
     # @param schema [String] 
     # @param [Hash] opts the optional parameters
-    # @option opts [String] :sort_by 
     # @return [IndexMeta]
     def v1_indexes_index_post(index, schema, opts = {})
       data, _status_code, _headers = v1_indexes_index_post_with_http_info(index, schema, opts)
@@ -494,7 +554,6 @@ module Cheminee
     # @param index [String] 
     # @param schema [String] 
     # @param [Hash] opts the optional parameters
-    # @option opts [String] :sort_by 
     # @return [Array<(IndexMeta, Integer, Hash)>] IndexMeta data, response status code and response headers
     def v1_indexes_index_post_with_http_info(index, schema, opts = {})
       if @api_client.config.debugging
@@ -514,7 +573,6 @@ module Cheminee
       # query parameters
       query_params = opts[:query_params] || {}
       query_params[:'schema'] = schema
-      query_params[:'sort_by'] = opts[:'sort_by'] if !opts[:'sort_by'].nil?
 
       # header parameters
       header_params = opts[:header_params] || {}
@@ -702,11 +760,11 @@ module Cheminee
     # @param index [String] 
     # @param smiles [String] 
     # @param [Hash] opts the optional parameters
-    # @option opts [String] :use_chirality 
+    # @option opts [Boolean] :use_chirality 
     # @option opts [Integer] :result_limit 
     # @option opts [Integer] :tautomer_limit 
     # @option opts [String] :extra_query 
-    # @option opts [String] :use_scaffolds 
+    # @option opts [Boolean] :use_scaffolds 
     # @return [Array<StructureSearchHit>]
     def v1_indexes_index_search_substructure_get(index, smiles, opts = {})
       data, _status_code, _headers = v1_indexes_index_search_substructure_get_with_http_info(index, smiles, opts)
@@ -717,11 +775,11 @@ module Cheminee
     # @param index [String] 
     # @param smiles [String] 
     # @param [Hash] opts the optional parameters
-    # @option opts [String] :use_chirality 
+    # @option opts [Boolean] :use_chirality 
     # @option opts [Integer] :result_limit 
     # @option opts [Integer] :tautomer_limit 
     # @option opts [String] :extra_query 
-    # @option opts [String] :use_scaffolds 
+    # @option opts [Boolean] :use_scaffolds 
     # @return [Array<(Array<StructureSearchHit>, Integer, Hash)>] Array<StructureSearchHit> data, response status code and response headers
     def v1_indexes_index_search_substructure_get_with_http_info(index, smiles, opts = {})
       if @api_client.config.debugging

data/lib/cheminee/models/query_search_hit.rb

@@ -38,7 +38,7 @@ module Cheminee
     # Attribute type mapping.
     def self.openapi_types
       {
-        :'extra_data' => :'String',
+        :'extra_data' => :'Object',
         :'smiles' => :'String',
         :'query' => :'String'
       }
@@ -47,6 +47,7 @@ module Cheminee
     # List of attributes with nullable: true
     def self.openapi_nullable
       Set.new([
+        :'extra_data',
       ])
     end
 
@@ -89,10 +90,6 @@ module Cheminee
     def list_invalid_properties
       warn '[DEPRECATED] the `list_invalid_properties` method is obsolete'
       invalid_properties = Array.new
-      if @extra_data.nil?
-        invalid_properties.push('invalid value for "extra_data", extra_data cannot be nil.')
-      end
-
       if @smiles.nil?
         invalid_properties.push('invalid value for "smiles", smiles cannot be nil.')
       end
@@ -108,7 +105,6 @@ module Cheminee
     # @return true if the model is valid
     def valid?
       warn '[DEPRECATED] the `valid?` method is obsolete'
-      return false if @extra_data.nil?
       return false if @smiles.nil?
       return false if @query.nil?
       true

data/lib/cheminee/models/structure_search_hit.rb

@@ -44,7 +44,7 @@ module Cheminee
     # Attribute type mapping.
     def self.openapi_types
       {
-        :'extra_data' => :'String',
+        :'extra_data' => :'Object',
         :'smiles' => :'String',
         :'score' => :'Float',
         :'query' => :'String',
@@ -55,6 +55,7 @@ module Cheminee
     # List of attributes with nullable: true
     def self.openapi_nullable
       Set.new([
+        :'extra_data',
       ])
     end
 
@@ -109,10 +110,6 @@ module Cheminee
     def list_invalid_properties
       warn '[DEPRECATED] the `list_invalid_properties` method is obsolete'
       invalid_properties = Array.new
-      if @extra_data.nil?
-        invalid_properties.push('invalid value for "extra_data", extra_data cannot be nil.')
-      end
-
       if @smiles.nil?
         invalid_properties.push('invalid value for "smiles", smiles cannot be nil.')
       end
@@ -136,7 +133,6 @@ module Cheminee
     # @return true if the model is valid
     def valid?
       warn '[DEPRECATED] the `valid?` method is obsolete'
-      return false if @extra_data.nil?
       return false if @smiles.nil?
       return false if @score.nil?
       return false if @query.nil?

data/lib/cheminee/version.rb

@@ -11,5 +11,5 @@ Generator version: 7.9.0-SNAPSHOT
 =end
 
 module Cheminee
-  VERSION = '0.1.35'
+  VERSION = '0.1.37'
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: cheminee
 version: !ruby/object:Gem::Version
-  version: 0.1.35
+  version: 0.1.37
 platform: ruby
 authors:
 - Xavier Lange
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2024-09-26 00:00:00.000000000 Z
+date: 2024-10-01 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: faraday
@@ -154,7 +154,7 @@ files:
 - lib/cheminee/version.rb
 - openapi-generator-config.json
 - openapi.json
-- pkg/cheminee-0.1.35.gem
+- pkg/cheminee-0.1.37.gem
 - spec/api/default_api_spec.rb
 - spec/api_client_spec.rb
 - spec/configuration_spec.rb