cheminee 0.1.22 → 0.1.23
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- checksums.yaml +4 -4
- data/Gemfile.lock +1 -1
- data/README.md +10 -4
- data/docs/DefaultApi.md +128 -0
- data/docs/DeleteIndexBulkResponseError.md +18 -0
- data/docs/DeleteIndexBulkResponseOk.md +18 -0
- data/docs/DeleteIndexBulkResponseOkStatus.md +20 -0
- data/docs/DeleteIndexError.md +18 -0
- data/lib/cheminee/api/default_api.rb +133 -0
- data/lib/cheminee/models/delete_index_bulk_response_error.rb +221 -0
- data/lib/cheminee/models/delete_index_bulk_response_ok.rb +223 -0
- data/lib/cheminee/models/delete_index_bulk_response_ok_status.rb +223 -0
- data/lib/cheminee/models/delete_index_error.rb +221 -0
- data/lib/cheminee/version.rb +1 -1
- data/lib/cheminee.rb +4 -0
- data/pkg/cheminee-0.1.23.gem +0 -0
- data/spec/models/delete_index_bulk_response_error_spec.rb +36 -0
- data/spec/models/delete_index_bulk_response_ok_spec.rb +36 -0
- data/spec/models/delete_index_bulk_response_ok_status_spec.rb +42 -0
- data/spec/models/delete_index_error_spec.rb +36 -0
- metadata +19 -3
- data/pkg/cheminee-0.1.22.gem +0 -0
checksums.yaml
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@@ -1,7 +1,7 @@
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: bb3416731e2bd1d1828c7e8e61362304b1b45540cddb3d2c3b289b124df21341
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data.tar.gz: 58e1a691dbc26f79ebfa1683d99bc480b5e74aa6d50615e85029911788fafb9c
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: b0737fb6be7ba9a4fd82e5054baf8f068ba2129eff5bf8f1b62a7403866073c81ee5f1c892f905d219e871b14caec7fe5d967049fc23d3677791e5a9a4c5515f
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data.tar.gz: b2a37023b18805ba4a7750451dc2269cfea3bc5fa6e42da35e3a2004cc13d9716cd046cd244f6d3fdf5a85f5d473f85ec7492f6c935aee26753027f84e3631ac
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data/Gemfile.lock
CHANGED
data/README.md
CHANGED
@@ -7,7 +7,7 @@ Cheminée: The Chemical Structure Search Engine
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This SDK is automatically generated by the [OpenAPI Generator](https://openapi-generator.tech) project:
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- API version: 1.0
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- Package version: 0.1.
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- Package version: 0.1.23
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- Generator version: 7.8.0-SNAPSHOT
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- Build package: org.openapitools.codegen.languages.RubyClientCodegen
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For more information, please visit [https://github.com/rdkit-rs/cheminee](https://github.com/rdkit-rs/cheminee)
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@@ -25,16 +25,16 @@ gem build cheminee.gemspec
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Then either install the gem locally:
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```shell
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gem install ./cheminee-0.1.
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gem install ./cheminee-0.1.23.gem
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```
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-
(for development, run `gem install --dev ./cheminee-0.1.
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(for development, run `gem install --dev ./cheminee-0.1.23.gem` to install the development dependencies)
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or publish the gem to a gem hosting service, e.g. [RubyGems](https://rubygems.org/).
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Finally add this to the Gemfile:
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gem 'cheminee', '~> 0.1.
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gem 'cheminee', '~> 0.1.23'
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### Install from Git
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@@ -80,7 +80,9 @@ Class | Method | HTTP request | Description
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------------ | ------------- | ------------- | -------------
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*Cheminee::DefaultApi* | [**v1_convert_mol_block_to_smiles_post**](docs/DefaultApi.md#v1_convert_mol_block_to_smiles_post) | **POST** /v1/convert/mol_block_to_smiles | Pass a list of SMILES through fragment_parent, uncharger, and canonicalization routines
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*Cheminee::DefaultApi* | [**v1_indexes_get**](docs/DefaultApi.md#v1_indexes_get) | **GET** /v1/indexes | List indexes
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*Cheminee::DefaultApi* | [**v1_indexes_index_bulk_delete_delete**](docs/DefaultApi.md#v1_indexes_index_bulk_delete_delete) | **DELETE** /v1/indexes/{index}/bulk_delete | Delete a list of smiles (after standardization) from an index
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*Cheminee::DefaultApi* | [**v1_indexes_index_bulk_index_post**](docs/DefaultApi.md#v1_indexes_index_bulk_index_post) | **POST** /v1/indexes/{index}/bulk_index | Index a list of SMILES and associated, free-form JSON attributes which are indexed and searchable
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*Cheminee::DefaultApi* | [**v1_indexes_index_delete**](docs/DefaultApi.md#v1_indexes_index_delete) | **DELETE** /v1/indexes/{index} | Delete an index
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*Cheminee::DefaultApi* | [**v1_indexes_index_get**](docs/DefaultApi.md#v1_indexes_index_get) | **GET** /v1/indexes/{index} | Get extended information about an index
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*Cheminee::DefaultApi* | [**v1_indexes_index_post**](docs/DefaultApi.md#v1_indexes_index_post) | **POST** /v1/indexes/{index} | Create an index
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*Cheminee::DefaultApi* | [**v1_indexes_index_search_basic_get**](docs/DefaultApi.md#v1_indexes_index_search_basic_get) | **GET** /v1/indexes/{index}/search/basic | Perform basic query search against index
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- [Cheminee::BulkRequestDoc](docs/BulkRequestDoc.md)
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- [Cheminee::ConvertedSmiles](docs/ConvertedSmiles.md)
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- [Cheminee::CreateIndexError](docs/CreateIndexError.md)
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- [Cheminee::DeleteIndexBulkResponseError](docs/DeleteIndexBulkResponseError.md)
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- [Cheminee::DeleteIndexBulkResponseOk](docs/DeleteIndexBulkResponseOk.md)
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- [Cheminee::DeleteIndexBulkResponseOkStatus](docs/DeleteIndexBulkResponseOkStatus.md)
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- [Cheminee::DeleteIndexError](docs/DeleteIndexError.md)
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- [Cheminee::GetIndexesResponseError](docs/GetIndexesResponseError.md)
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- [Cheminee::IndexMeta](docs/IndexMeta.md)
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- [Cheminee::IndexSchema](docs/IndexSchema.md)
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data/docs/DefaultApi.md
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@@ -6,7 +6,9 @@ All URIs are relative to *http://localhost:4001/api*
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| ------ | ------------ | ----------- |
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| [**v1_convert_mol_block_to_smiles_post**](DefaultApi.md#v1_convert_mol_block_to_smiles_post) | **POST** /v1/convert/mol_block_to_smiles | Pass a list of SMILES through fragment_parent, uncharger, and canonicalization routines |
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| [**v1_indexes_get**](DefaultApi.md#v1_indexes_get) | **GET** /v1/indexes | List indexes |
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| [**v1_indexes_index_bulk_delete_delete**](DefaultApi.md#v1_indexes_index_bulk_delete_delete) | **DELETE** /v1/indexes/{index}/bulk_delete | Delete a list of smiles (after standardization) from an index |
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| [**v1_indexes_index_bulk_index_post**](DefaultApi.md#v1_indexes_index_bulk_index_post) | **POST** /v1/indexes/{index}/bulk_index | Index a list of SMILES and associated, free-form JSON attributes which are indexed and searchable |
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| [**v1_indexes_index_delete**](DefaultApi.md#v1_indexes_index_delete) | **DELETE** /v1/indexes/{index} | Delete an index |
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| [**v1_indexes_index_get**](DefaultApi.md#v1_indexes_index_get) | **GET** /v1/indexes/{index} | Get extended information about an index |
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| [**v1_indexes_index_post**](DefaultApi.md#v1_indexes_index_post) | **POST** /v1/indexes/{index} | Create an index |
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| [**v1_indexes_index_search_basic_get**](DefaultApi.md#v1_indexes_index_search_basic_get) | **GET** /v1/indexes/{index}/search/basic | Perform basic query search against index |
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- **Accept**: application/json; charset=utf-8
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## v1_indexes_index_bulk_delete_delete
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> <DeleteIndexBulkResponseOk> v1_indexes_index_bulk_delete_delete(index, bulk_request)
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Delete a list of smiles (after standardization) from an index
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### Examples
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```ruby
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require 'time'
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require 'cheminee'
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api_instance = Cheminee::DefaultApi.new
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index = 'index_example' # String |
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bulk_request = Cheminee::BulkRequest.new({docs: [Cheminee::BulkRequestDoc.new({smiles: 'smiles_example'})]}) # BulkRequest |
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begin
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# Delete a list of smiles (after standardization) from an index
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result = api_instance.v1_indexes_index_bulk_delete_delete(index, bulk_request)
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p result
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rescue Cheminee::ApiError => e
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puts "Error when calling DefaultApi->v1_indexes_index_bulk_delete_delete: #{e}"
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end
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```
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#### Using the v1_indexes_index_bulk_delete_delete_with_http_info variant
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This returns an Array which contains the response data, status code and headers.
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> <Array(<DeleteIndexBulkResponseOk>, Integer, Hash)> v1_indexes_index_bulk_delete_delete_with_http_info(index, bulk_request)
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```ruby
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begin
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# Delete a list of smiles (after standardization) from an index
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data, status_code, headers = api_instance.v1_indexes_index_bulk_delete_delete_with_http_info(index, bulk_request)
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p status_code # => 2xx
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p headers # => { ... }
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p data # => <DeleteIndexBulkResponseOk>
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rescue Cheminee::ApiError => e
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puts "Error when calling DefaultApi->v1_indexes_index_bulk_delete_delete_with_http_info: #{e}"
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end
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```
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### Parameters
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| Name | Type | Description | Notes |
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| ---- | ---- | ----------- | ----- |
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| **index** | **String** | | |
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| **bulk_request** | [**BulkRequest**](BulkRequest.md) | | |
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### Return type
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[**DeleteIndexBulkResponseOk**](DeleteIndexBulkResponseOk.md)
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### Authorization
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No authorization required
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### HTTP request headers
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- **Content-Type**: application/json; charset=utf-8
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- **Accept**: application/json; charset=utf-8
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## v1_indexes_index_bulk_index_post
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> <PostIndexBulkResponseOk> v1_indexes_index_bulk_index_post(index, bulk_request)
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- **Accept**: application/json; charset=utf-8
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## v1_indexes_index_delete
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> <IndexMeta> v1_indexes_index_delete(index)
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Delete an index
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### Examples
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```ruby
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require 'time'
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require 'cheminee'
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api_instance = Cheminee::DefaultApi.new
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index = 'index_example' # String |
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begin
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# Delete an index
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result = api_instance.v1_indexes_index_delete(index)
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p result
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rescue Cheminee::ApiError => e
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puts "Error when calling DefaultApi->v1_indexes_index_delete: #{e}"
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end
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```
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#### Using the v1_indexes_index_delete_with_http_info variant
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This returns an Array which contains the response data, status code and headers.
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> <Array(<IndexMeta>, Integer, Hash)> v1_indexes_index_delete_with_http_info(index)
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```ruby
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begin
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# Delete an index
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data, status_code, headers = api_instance.v1_indexes_index_delete_with_http_info(index)
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p status_code # => 2xx
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p headers # => { ... }
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p data # => <IndexMeta>
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rescue Cheminee::ApiError => e
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puts "Error when calling DefaultApi->v1_indexes_index_delete_with_http_info: #{e}"
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end
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```
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### Parameters
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| Name | Type | Description | Notes |
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| ---- | ---- | ----------- | ----- |
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| **index** | **String** | | |
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### Return type
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[**IndexMeta**](IndexMeta.md)
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### Authorization
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No authorization required
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### HTTP request headers
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- **Content-Type**: Not defined
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- **Accept**: application/json; charset=utf-8
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## v1_indexes_index_get
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> <IndexSchema> v1_indexes_index_get(index)
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# Cheminee::DeleteIndexBulkResponseError
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## Properties
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| Name | Type | Description | Notes |
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| ---- | ---- | ----------- | ----- |
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| **error** | **String** | | |
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## Example
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```ruby
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require 'cheminee'
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instance = Cheminee::DeleteIndexBulkResponseError.new(
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error: null
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)
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```
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# Cheminee::DeleteIndexBulkResponseOk
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## Properties
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| Name | Type | Description | Notes |
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| ---- | ---- | ----------- | ----- |
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| **statuses** | [**Array<DeleteIndexBulkResponseOkStatus>**](DeleteIndexBulkResponseOkStatus.md) | | |
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|
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## Example
|
10
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|
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```ruby
|
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require 'cheminee'
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|
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instance = Cheminee::DeleteIndexBulkResponseOk.new(
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statuses: null
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)
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```
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@@ -0,0 +1,20 @@
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# Cheminee::DeleteIndexBulkResponseOkStatus
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## Properties
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| Name | Type | Description | Notes |
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| ---- | ---- | ----------- | ----- |
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| **opcode** | **Integer** | | [optional] |
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| **error** | **String** | | [optional] |
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|
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## Example
|
11
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|
12
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```ruby
|
13
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require 'cheminee'
|
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+
|
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instance = Cheminee::DeleteIndexBulkResponseOkStatus.new(
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opcode: null,
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error: null
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)
|
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```
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|
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# Cheminee::DeleteIndexError
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|
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## Properties
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|
5
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| Name | Type | Description | Notes |
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6
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| ---- | ---- | ----------- | ----- |
|
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| **error** | **String** | | |
|
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|
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## Example
|
10
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+
|
11
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```ruby
|
12
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require 'cheminee'
|
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|
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instance = Cheminee::DeleteIndexError.new(
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error: null
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)
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```
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18
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|
@@ -147,6 +147,78 @@ module Cheminee
|
|
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return data, status_code, headers
|
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end
|
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# Delete a list of smiles (after standardization) from an index
|
151
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# @param index [String]
|
152
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# @param bulk_request [BulkRequest]
|
153
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# @param [Hash] opts the optional parameters
|
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# @return [DeleteIndexBulkResponseOk]
|
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def v1_indexes_index_bulk_delete_delete(index, bulk_request, opts = {})
|
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+
data, _status_code, _headers = v1_indexes_index_bulk_delete_delete_with_http_info(index, bulk_request, opts)
|
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data
|
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end
|
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+
|
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# Delete a list of smiles (after standardization) from an index
|
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# @param index [String]
|
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# @param bulk_request [BulkRequest]
|
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# @param [Hash] opts the optional parameters
|
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# @return [Array<(DeleteIndexBulkResponseOk, Integer, Hash)>] DeleteIndexBulkResponseOk data, response status code and response headers
|
165
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+
def v1_indexes_index_bulk_delete_delete_with_http_info(index, bulk_request, opts = {})
|
166
|
+
if @api_client.config.debugging
|
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|
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@api_client.config.logger.debug 'Calling API: DefaultApi.v1_indexes_index_bulk_delete_delete ...'
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=begin
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#Cheminée
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#Cheminée: The Chemical Structure Search Engine
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The version of the OpenAPI document: 1.0
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require 'date'
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require 'time'
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module Cheminee
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class DeleteIndexBulkResponseError
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attr_accessor :error
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def self.attribute_map
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{
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def self.acceptable_attributes
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attribute_map.values
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|
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end
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# check to see if the attribute exists and convert string to symbol for hash key
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attributes = attributes.each_with_object({}) { |(k, v), h|
|
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|
+
if (!self.class.attribute_map.key?(k.to_sym))
|
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fail ArgumentError, "`#{k}` is not a valid attribute in `Cheminee::DeleteIndexBulkResponseError`. Please check the name to make sure it's valid. List of attributes: " + self.class.attribute_map.keys.inspect
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|
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|
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|
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end
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# Show invalid properties with the reasons. Usually used together with valid?
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# @return Array for valid properties with the reasons
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def list_invalid_properties
|
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warn '[DEPRECATED] the `list_invalid_properties` method is obsolete'
|
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|
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invalid_properties = Array.new
|
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|
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if @error.nil?
|
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invalid_properties.push('invalid value for "error", error cannot be nil.')
|
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|
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|
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|
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|
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|
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invalid_properties
|
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|
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# @return true if the model is valid
|
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def valid?
|
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|
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warn '[DEPRECATED] the `valid?` method is obsolete'
|
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|
+
return false if @error.nil?
|
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|
+
true
|
85
|
+
end
|
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|
+
|
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|
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# Checks equality by comparing each attribute.
|
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|
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# @param [Object] Object to be compared
|
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|
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def ==(o)
|
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|
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return true if self.equal?(o)
|
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|
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self.class == o.class &&
|
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|
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error == o.error
|
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|
+
end
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|
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# @see the `==` method
|
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|
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# @param [Object] Object to be compared
|
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|
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def eql?(o)
|
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|
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self == o
|
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|
+
end
|
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|
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# Calculates hash code according to all attributes.
|
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# @return [Integer] Hash code
|
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|
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def hash
|
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|
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[error].hash
|
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|
+
end
|
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+
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# Builds the object from hash
|
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# @param [Hash] attributes Model attributes in the form of hash
|
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# @return [Object] Returns the model itself
|
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def self.build_from_hash(attributes)
|
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|
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return nil unless attributes.is_a?(Hash)
|
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attributes = attributes.transform_keys(&:to_sym)
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transformed_hash = {}
|
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|
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|
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transformed_hash["#{key}"] = nil
|
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|
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elsif type =~ /\AArray<(.*)>/i
|
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|
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|
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# is documented as an array but the input is not
|
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|
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if attributes[attribute_map[key]].is_a?(Array)
|
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|
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transformed_hash["#{key}"] = attributes[attribute_map[key]].map { |v| _deserialize($1, v) }
|
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|
+
end
|
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|
+
elsif !attributes[attribute_map[key]].nil?
|
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|
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transformed_hash["#{key}"] = _deserialize(type, attributes[attribute_map[key]])
|
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|
+
end
|
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|
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end
|
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|
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new(transformed_hash)
|
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|
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end
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|
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# @param string value Value to be deserialized
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# @return [Object] Deserialized data
|
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def self._deserialize(type, value)
|
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case type.to_sym
|
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when :Time
|
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Time.parse(value)
|
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when :Date
|
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Date.parse(value)
|
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when :String
|
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value.to_s
|
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when :Integer
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value.to_i
|
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when :Float
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value.to_f
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when :Boolean
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if value.to_s =~ /\A(true|t|yes|y|1)\z/i
|
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true
|
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|
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else
|
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false
|
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|
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end
|
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|
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when :Object
|
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|
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# generic object (usually a Hash), return directly
|
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|
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value
|
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|
+
when /\AArray<(?<inner_type>.+)>\z/
|
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|
+
inner_type = Regexp.last_match[:inner_type]
|
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|
+
value.map { |v| _deserialize(inner_type, v) }
|
158
|
+
when /\AHash<(?<k_type>.+?), (?<v_type>.+)>\z/
|
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|
+
k_type = Regexp.last_match[:k_type]
|
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|
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v_type = Regexp.last_match[:v_type]
|
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|
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{}.tap do |hash|
|
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|
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value.each do |k, v|
|
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|
+
hash[_deserialize(k_type, k)] = _deserialize(v_type, v)
|
164
|
+
end
|
165
|
+
end
|
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|
+
else # model
|
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|
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# models (e.g. Pet) or oneOf
|
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|
+
klass = Cheminee.const_get(type)
|
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|
+
klass.respond_to?(:openapi_any_of) || klass.respond_to?(:openapi_one_of) ? klass.build(value) : klass.build_from_hash(value)
|
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|
+
end
|
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|
+
end
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+
|
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|
+
# Returns the string representation of the object
|
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|
+
# @return [String] String presentation of the object
|
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|
+
def to_s
|
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|
+
to_hash.to_s
|
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|
+
end
|
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+
|
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|
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# to_body is an alias to to_hash (backward compatibility)
|
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# @return [Hash] Returns the object in the form of hash
|
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def to_body
|
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|
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to_hash
|
183
|
+
end
|
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|
+
|
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|
+
# Returns the object in the form of hash
|
186
|
+
# @return [Hash] Returns the object in the form of hash
|
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|
+
def to_hash
|
188
|
+
hash = {}
|
189
|
+
self.class.attribute_map.each_pair do |attr, param|
|
190
|
+
value = self.send(attr)
|
191
|
+
if value.nil?
|
192
|
+
is_nullable = self.class.openapi_nullable.include?(attr)
|
193
|
+
next if !is_nullable || (is_nullable && !instance_variable_defined?(:"@#{attr}"))
|
194
|
+
end
|
195
|
+
|
196
|
+
hash[param] = _to_hash(value)
|
197
|
+
end
|
198
|
+
hash
|
199
|
+
end
|
200
|
+
|
201
|
+
# Outputs non-array value in the form of hash
|
202
|
+
# For object, use to_hash. Otherwise, just return the value
|
203
|
+
# @param [Object] value Any valid value
|
204
|
+
# @return [Hash] Returns the value in the form of hash
|
205
|
+
def _to_hash(value)
|
206
|
+
if value.is_a?(Array)
|
207
|
+
value.compact.map { |v| _to_hash(v) }
|
208
|
+
elsif value.is_a?(Hash)
|
209
|
+
{}.tap do |hash|
|
210
|
+
value.each { |k, v| hash[k] = _to_hash(v) }
|
211
|
+
end
|
212
|
+
elsif value.respond_to? :to_hash
|
213
|
+
value.to_hash
|
214
|
+
else
|
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|
+
value
|
216
|
+
end
|
217
|
+
end
|
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|
+
|
219
|
+
end
|
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|
221
|
+
end
|