cheminee 0.1.12 → 0.1.15
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- checksums.yaml +4 -4
- data/Gemfile.lock +7 -7
- data/README.md +10 -6
- data/cheminee.gemspec +2 -1
- data/docs/BulkRequestDoc.md +2 -2
- data/docs/DefaultApi.md +91 -20
- data/docs/IndexSchema.md +20 -0
- data/docs/QueryResponseError.md +18 -0
- data/docs/QuerySearchHit.md +22 -0
- data/docs/Smiles.md +18 -0
- data/docs/StandardizedSmiles.md +20 -0
- data/lib/cheminee/api/default_api.rb +99 -25
- data/lib/cheminee/api_client.rb +21 -20
- data/lib/cheminee/api_error.rb +1 -1
- data/lib/cheminee/configuration.rb +1 -1
- data/lib/cheminee/models/bulk_request.rb +2 -2
- data/lib/cheminee/models/bulk_request_doc.rb +13 -13
- data/lib/cheminee/models/create_index_error.rb +2 -2
- data/lib/cheminee/models/get_indexes_response_error.rb +2 -2
- data/lib/cheminee/models/index_meta.rb +2 -2
- data/lib/cheminee/models/index_schema.rb +233 -0
- data/lib/cheminee/models/list_index_response_err.rb +2 -2
- data/lib/cheminee/models/post_index_bulk_response_error.rb +2 -2
- data/lib/cheminee/models/post_index_bulk_response_ok.rb +2 -2
- data/lib/cheminee/models/post_index_bulk_response_ok_status.rb +2 -2
- data/lib/cheminee/models/query_response_error.rb +221 -0
- data/lib/cheminee/models/query_search_hit.rb +249 -0
- data/lib/cheminee/models/schema.rb +2 -2
- data/lib/cheminee/models/smiles.rb +221 -0
- data/lib/cheminee/models/standardized_smiles.rb +223 -0
- data/lib/cheminee/models/structure_response_error.rb +2 -2
- data/lib/cheminee/models/structure_search_hit.rb +2 -2
- data/lib/cheminee/version.rb +2 -2
- data/lib/cheminee.rb +6 -3
- data/pkg/cheminee-0.1.15.gem +0 -0
- data/spec/models/index_schema_spec.rb +42 -0
- data/spec/models/query_response_error_spec.rb +36 -0
- data/spec/models/query_search_hit_spec.rb +48 -0
- data/spec/models/smiles_spec.rb +36 -0
- data/spec/models/standardized_smiles_spec.rb +42 -0
- data/spec/spec_helper.rb +1 -1
- metadata +23 -3
- data/pkg/cheminee-0.1.12.gem +0 -0
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=begin
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#Cheminée
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#Cheminée: The Chemical Structure Search Engine
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The version of the OpenAPI document: 1.0
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Generated by: https://openapi-generator.tech
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OpenAPI Generator version: 7.3.0-SNAPSHOT
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=end
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require 'date'
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require 'time'
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module Cheminee
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class IndexSchema
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attr_accessor :index
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attr_accessor :schema
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# Attribute mapping from ruby-style variable name to JSON key.
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def self.attribute_map
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{
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:'index' => :'index',
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:'schema' => :'schema'
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}
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end
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# Returns all the JSON keys this model knows about
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def self.acceptable_attributes
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attribute_map.values
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end
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# Attribute type mapping.
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def self.openapi_types
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{
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:'index' => :'String',
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:'schema' => :'Object'
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}
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end
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# List of attributes with nullable: true
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def self.openapi_nullable
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Set.new([
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:'schema'
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])
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end
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# Initializes the object
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# @param [Hash] attributes Model attributes in the form of hash
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def initialize(attributes = {})
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if (!attributes.is_a?(Hash))
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fail ArgumentError, "The input argument (attributes) must be a hash in `Cheminee::IndexSchema` initialize method"
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end
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# check to see if the attribute exists and convert string to symbol for hash key
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attributes = attributes.each_with_object({}) { |(k, v), h|
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if (!self.class.attribute_map.key?(k.to_sym))
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fail ArgumentError, "`#{k}` is not a valid attribute in `Cheminee::IndexSchema`. Please check the name to make sure it's valid. List of attributes: " + self.class.attribute_map.keys.inspect
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end
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h[k.to_sym] = v
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}
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if attributes.key?(:'index')
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self.index = attributes[:'index']
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else
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self.index = nil
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end
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if attributes.key?(:'schema')
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self.schema = attributes[:'schema']
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else
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self.schema = nil
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end
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end
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# Show invalid properties with the reasons. Usually used together with valid?
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# @return Array for valid properties with the reasons
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def list_invalid_properties
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warn '[DEPRECATED] the `list_invalid_properties` method is obsolete'
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invalid_properties = Array.new
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if @index.nil?
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invalid_properties.push('invalid value for "index", index cannot be nil.')
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end
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invalid_properties
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end
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# Check to see if the all the properties in the model are valid
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# @return true if the model is valid
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def valid?
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warn '[DEPRECATED] the `valid?` method is obsolete'
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return false if @index.nil?
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true
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end
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# Checks equality by comparing each attribute.
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# @param [Object] Object to be compared
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def ==(o)
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return true if self.equal?(o)
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self.class == o.class &&
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index == o.index &&
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schema == o.schema
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end
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# @see the `==` method
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# @param [Object] Object to be compared
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def eql?(o)
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self == o
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end
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# Calculates hash code according to all attributes.
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# @return [Integer] Hash code
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def hash
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[index, schema].hash
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end
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# Builds the object from hash
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# @param [Hash] attributes Model attributes in the form of hash
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# @return [Object] Returns the model itself
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def self.build_from_hash(attributes)
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return nil unless attributes.is_a?(Hash)
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attributes = attributes.transform_keys(&:to_sym)
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transformed_hash = {}
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openapi_types.each_pair do |key, type|
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if attributes.key?(attribute_map[key]) && attributes[attribute_map[key]].nil?
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transformed_hash["#{key}"] = nil
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elsif type =~ /\AArray<(.*)>/i
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# check to ensure the input is an array given that the attribute
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# is documented as an array but the input is not
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if attributes[attribute_map[key]].is_a?(Array)
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transformed_hash["#{key}"] = attributes[attribute_map[key]].map { |v| _deserialize($1, v) }
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end
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elsif !attributes[attribute_map[key]].nil?
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transformed_hash["#{key}"] = _deserialize(type, attributes[attribute_map[key]])
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end
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end
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new(transformed_hash)
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end
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# Deserializes the data based on type
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# @param string type Data type
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# @param string value Value to be deserialized
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# @return [Object] Deserialized data
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def self._deserialize(type, value)
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case type.to_sym
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when :Time
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Time.parse(value)
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when :Date
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Date.parse(value)
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when :String
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value.to_s
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when :Integer
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value.to_i
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when :Float
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value.to_f
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when :Boolean
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if value.to_s =~ /\A(true|t|yes|y|1)\z/i
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true
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else
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false
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end
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when :Object
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# generic object (usually a Hash), return directly
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value
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when /\AArray<(?<inner_type>.+)>\z/
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inner_type = Regexp.last_match[:inner_type]
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value.map { |v| _deserialize(inner_type, v) }
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when /\AHash<(?<k_type>.+?), (?<v_type>.+)>\z/
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k_type = Regexp.last_match[:k_type]
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v_type = Regexp.last_match[:v_type]
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{}.tap do |hash|
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value.each do |k, v|
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hash[_deserialize(k_type, k)] = _deserialize(v_type, v)
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end
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end
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else # model
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# models (e.g. Pet) or oneOf
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klass = Cheminee.const_get(type)
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klass.respond_to?(:openapi_any_of) || klass.respond_to?(:openapi_one_of) ? klass.build(value) : klass.build_from_hash(value)
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end
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end
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# Returns the string representation of the object
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# @return [String] String presentation of the object
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def to_s
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to_hash.to_s
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end
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# to_body is an alias to to_hash (backward compatibility)
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# @return [Hash] Returns the object in the form of hash
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def to_body
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to_hash
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end
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# Returns the object in the form of hash
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# @return [Hash] Returns the object in the form of hash
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def to_hash
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hash = {}
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self.class.attribute_map.each_pair do |attr, param|
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value = self.send(attr)
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if value.nil?
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is_nullable = self.class.openapi_nullable.include?(attr)
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next if !is_nullable || (is_nullable && !instance_variable_defined?(:"@#{attr}"))
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end
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hash[param] = _to_hash(value)
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end
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hash
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end
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# Outputs non-array value in the form of hash
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# For object, use to_hash. Otherwise, just return the value
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# @param [Object] value Any valid value
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# @return [Hash] Returns the value in the form of hash
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def _to_hash(value)
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if value.is_a?(Array)
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value.compact.map { |v| _to_hash(v) }
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elsif value.is_a?(Hash)
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{}.tap do |hash|
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value.each { |k, v| hash[k] = _to_hash(v) }
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end
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elsif value.respond_to? :to_hash
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value.to_hash
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value
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end
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end
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end
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end
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OpenAPI Generator version: 7.
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OpenAPI Generator version: 7.3.0-SNAPSHOT
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=end
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else # model
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# models (e.g. Pet) or oneOf
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klass = Cheminee.const_get(type)
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klass.respond_to?(:openapi_one_of) ? klass.build(value) : klass.build_from_hash(value)
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klass.respond_to?(:openapi_any_of) || klass.respond_to?(:openapi_one_of) ? klass.build(value) : klass.build_from_hash(value)
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=end
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else # model
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# models (e.g. Pet) or oneOf
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klass = Cheminee.const_get(type)
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klass.respond_to?(:openapi_one_of) ? klass.build(value) : klass.build_from_hash(value)
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klass.respond_to?(:openapi_any_of) || klass.respond_to?(:openapi_one_of) ? klass.build(value) : klass.build_from_hash(value)
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end
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=end
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else # model
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# models (e.g. Pet) or oneOf
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klass = Cheminee.const_get(type)
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klass.respond_to?(:openapi_one_of) ? klass.build(value) : klass.build_from_hash(value)
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klass.respond_to?(:openapi_any_of) || klass.respond_to?(:openapi_one_of) ? klass.build(value) : klass.build_from_hash(value)
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=end
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else # model
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# models (e.g. Pet) or oneOf
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klass = Cheminee.const_get(type)
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klass.respond_to?(:openapi_one_of) ? klass.build(value) : klass.build_from_hash(value)
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klass.respond_to?(:openapi_any_of) || klass.respond_to?(:openapi_one_of) ? klass.build(value) : klass.build_from_hash(value)
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end
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end
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=begin
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#Cheminée
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#Cheminée: The Chemical Structure Search Engine
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The version of the OpenAPI document: 1.0
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Generated by: https://openapi-generator.tech
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OpenAPI Generator version: 7.3.0-SNAPSHOT
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=end
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require 'date'
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require 'time'
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module Cheminee
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class QueryResponseError
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attr_accessor :error
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# Attribute mapping from ruby-style variable name to JSON key.
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def self.attribute_map
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{
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:'error' => :'error'
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}
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end
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# Returns all the JSON keys this model knows about
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def self.acceptable_attributes
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attribute_map.values
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end
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# Attribute type mapping.
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def self.openapi_types
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{
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:'error' => :'String'
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}
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end
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# List of attributes with nullable: true
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def self.openapi_nullable
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Set.new([
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])
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|
+
end
|
44
|
+
|
45
|
+
# Initializes the object
|
46
|
+
# @param [Hash] attributes Model attributes in the form of hash
|
47
|
+
def initialize(attributes = {})
|
48
|
+
if (!attributes.is_a?(Hash))
|
49
|
+
fail ArgumentError, "The input argument (attributes) must be a hash in `Cheminee::QueryResponseError` initialize method"
|
50
|
+
end
|
51
|
+
|
52
|
+
# check to see if the attribute exists and convert string to symbol for hash key
|
53
|
+
attributes = attributes.each_with_object({}) { |(k, v), h|
|
54
|
+
if (!self.class.attribute_map.key?(k.to_sym))
|
55
|
+
fail ArgumentError, "`#{k}` is not a valid attribute in `Cheminee::QueryResponseError`. Please check the name to make sure it's valid. List of attributes: " + self.class.attribute_map.keys.inspect
|
56
|
+
end
|
57
|
+
h[k.to_sym] = v
|
58
|
+
}
|
59
|
+
|
60
|
+
if attributes.key?(:'error')
|
61
|
+
self.error = attributes[:'error']
|
62
|
+
else
|
63
|
+
self.error = nil
|
64
|
+
end
|
65
|
+
end
|
66
|
+
|
67
|
+
# Show invalid properties with the reasons. Usually used together with valid?
|
68
|
+
# @return Array for valid properties with the reasons
|
69
|
+
def list_invalid_properties
|
70
|
+
warn '[DEPRECATED] the `list_invalid_properties` method is obsolete'
|
71
|
+
invalid_properties = Array.new
|
72
|
+
if @error.nil?
|
73
|
+
invalid_properties.push('invalid value for "error", error cannot be nil.')
|
74
|
+
end
|
75
|
+
|
76
|
+
invalid_properties
|
77
|
+
end
|
78
|
+
|
79
|
+
# Check to see if the all the properties in the model are valid
|
80
|
+
# @return true if the model is valid
|
81
|
+
def valid?
|
82
|
+
warn '[DEPRECATED] the `valid?` method is obsolete'
|
83
|
+
return false if @error.nil?
|
84
|
+
true
|
85
|
+
end
|
86
|
+
|
87
|
+
# Checks equality by comparing each attribute.
|
88
|
+
# @param [Object] Object to be compared
|
89
|
+
def ==(o)
|
90
|
+
return true if self.equal?(o)
|
91
|
+
self.class == o.class &&
|
92
|
+
error == o.error
|
93
|
+
end
|
94
|
+
|
95
|
+
# @see the `==` method
|
96
|
+
# @param [Object] Object to be compared
|
97
|
+
def eql?(o)
|
98
|
+
self == o
|
99
|
+
end
|
100
|
+
|
101
|
+
# Calculates hash code according to all attributes.
|
102
|
+
# @return [Integer] Hash code
|
103
|
+
def hash
|
104
|
+
[error].hash
|
105
|
+
end
|
106
|
+
|
107
|
+
# Builds the object from hash
|
108
|
+
# @param [Hash] attributes Model attributes in the form of hash
|
109
|
+
# @return [Object] Returns the model itself
|
110
|
+
def self.build_from_hash(attributes)
|
111
|
+
return nil unless attributes.is_a?(Hash)
|
112
|
+
attributes = attributes.transform_keys(&:to_sym)
|
113
|
+
transformed_hash = {}
|
114
|
+
openapi_types.each_pair do |key, type|
|
115
|
+
if attributes.key?(attribute_map[key]) && attributes[attribute_map[key]].nil?
|
116
|
+
transformed_hash["#{key}"] = nil
|
117
|
+
elsif type =~ /\AArray<(.*)>/i
|
118
|
+
# check to ensure the input is an array given that the attribute
|
119
|
+
# is documented as an array but the input is not
|
120
|
+
if attributes[attribute_map[key]].is_a?(Array)
|
121
|
+
transformed_hash["#{key}"] = attributes[attribute_map[key]].map { |v| _deserialize($1, v) }
|
122
|
+
end
|
123
|
+
elsif !attributes[attribute_map[key]].nil?
|
124
|
+
transformed_hash["#{key}"] = _deserialize(type, attributes[attribute_map[key]])
|
125
|
+
end
|
126
|
+
end
|
127
|
+
new(transformed_hash)
|
128
|
+
end
|
129
|
+
|
130
|
+
# Deserializes the data based on type
|
131
|
+
# @param string type Data type
|
132
|
+
# @param string value Value to be deserialized
|
133
|
+
# @return [Object] Deserialized data
|
134
|
+
def self._deserialize(type, value)
|
135
|
+
case type.to_sym
|
136
|
+
when :Time
|
137
|
+
Time.parse(value)
|
138
|
+
when :Date
|
139
|
+
Date.parse(value)
|
140
|
+
when :String
|
141
|
+
value.to_s
|
142
|
+
when :Integer
|
143
|
+
value.to_i
|
144
|
+
when :Float
|
145
|
+
value.to_f
|
146
|
+
when :Boolean
|
147
|
+
if value.to_s =~ /\A(true|t|yes|y|1)\z/i
|
148
|
+
true
|
149
|
+
else
|
150
|
+
false
|
151
|
+
end
|
152
|
+
when :Object
|
153
|
+
# generic object (usually a Hash), return directly
|
154
|
+
value
|
155
|
+
when /\AArray<(?<inner_type>.+)>\z/
|
156
|
+
inner_type = Regexp.last_match[:inner_type]
|
157
|
+
value.map { |v| _deserialize(inner_type, v) }
|
158
|
+
when /\AHash<(?<k_type>.+?), (?<v_type>.+)>\z/
|
159
|
+
k_type = Regexp.last_match[:k_type]
|
160
|
+
v_type = Regexp.last_match[:v_type]
|
161
|
+
{}.tap do |hash|
|
162
|
+
value.each do |k, v|
|
163
|
+
hash[_deserialize(k_type, k)] = _deserialize(v_type, v)
|
164
|
+
end
|
165
|
+
end
|
166
|
+
else # model
|
167
|
+
# models (e.g. Pet) or oneOf
|
168
|
+
klass = Cheminee.const_get(type)
|
169
|
+
klass.respond_to?(:openapi_any_of) || klass.respond_to?(:openapi_one_of) ? klass.build(value) : klass.build_from_hash(value)
|
170
|
+
end
|
171
|
+
end
|
172
|
+
|
173
|
+
# Returns the string representation of the object
|
174
|
+
# @return [String] String presentation of the object
|
175
|
+
def to_s
|
176
|
+
to_hash.to_s
|
177
|
+
end
|
178
|
+
|
179
|
+
# to_body is an alias to to_hash (backward compatibility)
|
180
|
+
# @return [Hash] Returns the object in the form of hash
|
181
|
+
def to_body
|
182
|
+
to_hash
|
183
|
+
end
|
184
|
+
|
185
|
+
# Returns the object in the form of hash
|
186
|
+
# @return [Hash] Returns the object in the form of hash
|
187
|
+
def to_hash
|
188
|
+
hash = {}
|
189
|
+
self.class.attribute_map.each_pair do |attr, param|
|
190
|
+
value = self.send(attr)
|
191
|
+
if value.nil?
|
192
|
+
is_nullable = self.class.openapi_nullable.include?(attr)
|
193
|
+
next if !is_nullable || (is_nullable && !instance_variable_defined?(:"@#{attr}"))
|
194
|
+
end
|
195
|
+
|
196
|
+
hash[param] = _to_hash(value)
|
197
|
+
end
|
198
|
+
hash
|
199
|
+
end
|
200
|
+
|
201
|
+
# Outputs non-array value in the form of hash
|
202
|
+
# For object, use to_hash. Otherwise, just return the value
|
203
|
+
# @param [Object] value Any valid value
|
204
|
+
# @return [Hash] Returns the value in the form of hash
|
205
|
+
def _to_hash(value)
|
206
|
+
if value.is_a?(Array)
|
207
|
+
value.compact.map { |v| _to_hash(v) }
|
208
|
+
elsif value.is_a?(Hash)
|
209
|
+
{}.tap do |hash|
|
210
|
+
value.each { |k, v| hash[k] = _to_hash(v) }
|
211
|
+
end
|
212
|
+
elsif value.respond_to? :to_hash
|
213
|
+
value.to_hash
|
214
|
+
else
|
215
|
+
value
|
216
|
+
end
|
217
|
+
end
|
218
|
+
|
219
|
+
end
|
220
|
+
|
221
|
+
end
|