cheminee 0.0.15 → 0.1.6

data/docs/PostIndexBulkResponseError.md

@@ -0,0 +1,18 @@
+# Cheminee::PostIndexBulkResponseError
+
+## Properties
+
+| Name | Type | Description | Notes |
+| ---- | ---- | ----------- | ----- |
+| **error** | **String** |  |  |
+
+## Example
+
+```ruby
+require 'cheminee'
+
+instance = Cheminee::PostIndexBulkResponseError.new(
+  error: null
+)
+```
+

data/docs/PostIndexBulkResponseOk.md

@@ -0,0 +1,18 @@
+# Cheminee::PostIndexBulkResponseOk
+
+## Properties
+
+| Name | Type | Description | Notes |
+| ---- | ---- | ----------- | ----- |
+| **statuses** | [**Array<PostIndexBulkResponseOkStatus>**](PostIndexBulkResponseOkStatus.md) |  |  |
+
+## Example
+
+```ruby
+require 'cheminee'
+
+instance = Cheminee::PostIndexBulkResponseOk.new(
+  statuses: null
+)
+```
+

data/docs/PostIndexBulkResponseOkStatus.md

@@ -0,0 +1,20 @@
+# Cheminee::PostIndexBulkResponseOkStatus
+
+## Properties
+
+| Name | Type | Description | Notes |
+| ---- | ---- | ----------- | ----- |
+| **opcode** | **Integer** |  | [optional] |
+| **error** | **String** |  | [optional] |
+
+## Example
+
+```ruby
+require 'cheminee'
+
+instance = Cheminee::PostIndexBulkResponseOkStatus.new(
+  opcode: null,
+  error: null
+)
+```
+

data/docs/Schema.md

@@ -0,0 +1,20 @@
+# Cheminee::Schema
+
+## Properties
+
+| Name | Type | Description | Notes |
+| ---- | ---- | ----------- | ----- |
+| **name** | **String** |  |  |
+| **schema** | **Object** |  |  |
+
+## Example
+
+```ruby
+require 'cheminee'
+
+instance = Cheminee::Schema.new(
+  name: null,
+  schema: null
+)
+```
+

data/docs/SubstructureSearchHit.md

@@ -0,0 +1,24 @@
+# Cheminee::SubstructureSearchHit
+
+## Properties
+
+| Name | Type | Description | Notes |
+| ---- | ---- | ----------- | ----- |
+| **extra_data** | **Object** |  |  |
+| **smiles** | **String** |  |  |
+| **score** | **Float** |  |  |
+| **query** | **String** |  |  |
+
+## Example
+
+```ruby
+require 'cheminee'
+
+instance = Cheminee::SubstructureSearchHit.new(
+  extra_data: null,
+  smiles: null,
+  score: null,
+  query: null
+)
+```
+

data/lib/cheminee/api/default_api.rb

@@ -6,7 +6,7 @@
 The version of the OpenAPI document: 1.0
 
 Generated by: https://openapi-generator.tech
-OpenAPI Generator version: 7.0.0-SNAPSHOT
+OpenAPI Generator version: 7.1.0-SNAPSHOT
 
 =end
 
@@ -19,27 +19,397 @@ module Cheminee
     def initialize(api_client = ApiClient.default)
       @api_client = api_client
     end
+    # @param [Hash] opts the optional parameters
+    # @return [Array<IndexMeta>]
+    def v1_indexes_get(opts = {})
+      data, _status_code, _headers = v1_indexes_get_with_http_info(opts)
+      data
+    end
+
+    # @param [Hash] opts the optional parameters
+    # @return [Array<(Array<IndexMeta>, Integer, Hash)>] Array<IndexMeta> data, response status code and response headers
+    def v1_indexes_get_with_http_info(opts = {})
+      if @api_client.config.debugging
+        @api_client.config.logger.debug 'Calling API: DefaultApi.v1_indexes_get ...'
+      end
+      # resource path
+      local_var_path = '/v1/indexes'
+
+      # query parameters
+      query_params = opts[:query_params] || {}
+
+      # header parameters
+      header_params = opts[:header_params] || {}
+      # HTTP header 'Accept' (if needed)
+      header_params['Accept'] = @api_client.select_header_accept(['application/json; charset=utf-8'])
+
+      # form parameters
+      form_params = opts[:form_params] || {}
+
+      # http body (model)
+      post_body = opts[:debug_body]
+
+      # return_type
+      return_type = opts[:debug_return_type] || 'Array<IndexMeta>'
+
+      # auth_names
+      auth_names = opts[:debug_auth_names] || []
+
+      new_options = opts.merge(
+        :operation => :"DefaultApi.v1_indexes_get",
+        :header_params => header_params,
+        :query_params => query_params,
+        :form_params => form_params,
+        :body => post_body,
+        :auth_names => auth_names,
+        :return_type => return_type
+      )
+
+      data, status_code, headers = @api_client.call_api(:GET, local_var_path, new_options)
+      if @api_client.config.debugging
+        @api_client.config.logger.debug "API called: DefaultApi#v1_indexes_get\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}"
+      end
+      return data, status_code, headers
+    end
+
+    # @param index [String] 
+    # @param bulk_request [BulkRequest] 
+    # @param [Hash] opts the optional parameters
+    # @return [PostIndexBulkResponseOk]
+    def v1_indexes_index_bulk_index_post(index, bulk_request, opts = {})
+      data, _status_code, _headers = v1_indexes_index_bulk_index_post_with_http_info(index, bulk_request, opts)
+      data
+    end
+
+    # @param index [String] 
+    # @param bulk_request [BulkRequest] 
+    # @param [Hash] opts the optional parameters
+    # @return [Array<(PostIndexBulkResponseOk, Integer, Hash)>] PostIndexBulkResponseOk data, response status code and response headers
+    def v1_indexes_index_bulk_index_post_with_http_info(index, bulk_request, opts = {})
+      if @api_client.config.debugging
+        @api_client.config.logger.debug 'Calling API: DefaultApi.v1_indexes_index_bulk_index_post ...'
+      end
+      # verify the required parameter 'index' is set
+      if @api_client.config.client_side_validation && index.nil?
+        fail ArgumentError, "Missing the required parameter 'index' when calling DefaultApi.v1_indexes_index_bulk_index_post"
+      end
+      # verify the required parameter 'bulk_request' is set
+      if @api_client.config.client_side_validation && bulk_request.nil?
+        fail ArgumentError, "Missing the required parameter 'bulk_request' when calling DefaultApi.v1_indexes_index_bulk_index_post"
+      end
+      # resource path
+      local_var_path = '/v1/indexes/{index}/bulk_index'.sub('{' + 'index' + '}', CGI.escape(index.to_s))
+
+      # query parameters
+      query_params = opts[:query_params] || {}
+
+      # header parameters
+      header_params = opts[:header_params] || {}
+      # HTTP header 'Accept' (if needed)
+      header_params['Accept'] = @api_client.select_header_accept(['application/json; charset=utf-8'])
+      # HTTP header 'Content-Type'
+      content_type = @api_client.select_header_content_type(['application/json; charset=utf-8'])
+      if !content_type.nil?
+          header_params['Content-Type'] = content_type
+      end
+
+      # form parameters
+      form_params = opts[:form_params] || {}
+
+      # http body (model)
+      post_body = opts[:debug_body] || @api_client.object_to_http_body(bulk_request)
+
+      # return_type
+      return_type = opts[:debug_return_type] || 'PostIndexBulkResponseOk'
+
+      # auth_names
+      auth_names = opts[:debug_auth_names] || []
+
+      new_options = opts.merge(
+        :operation => :"DefaultApi.v1_indexes_index_bulk_index_post",
+        :header_params => header_params,
+        :query_params => query_params,
+        :form_params => form_params,
+        :body => post_body,
+        :auth_names => auth_names,
+        :return_type => return_type
+      )
+
+      data, status_code, headers = @api_client.call_api(:POST, local_var_path, new_options)
+      if @api_client.config.debugging
+        @api_client.config.logger.debug "API called: DefaultApi#v1_indexes_index_bulk_index_post\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}"
+      end
+      return data, status_code, headers
+    end
+
+    # @param index [String] 
+    # @param [Hash] opts the optional parameters
+    # @return [Array<IndexMeta>]
+    def v1_indexes_index_get(index, opts = {})
+      data, _status_code, _headers = v1_indexes_index_get_with_http_info(index, opts)
+      data
+    end
+
+    # @param index [String] 
+    # @param [Hash] opts the optional parameters
+    # @return [Array<(Array<IndexMeta>, Integer, Hash)>] Array<IndexMeta> data, response status code and response headers
+    def v1_indexes_index_get_with_http_info(index, opts = {})
+      if @api_client.config.debugging
+        @api_client.config.logger.debug 'Calling API: DefaultApi.v1_indexes_index_get ...'
+      end
+      # verify the required parameter 'index' is set
+      if @api_client.config.client_side_validation && index.nil?
+        fail ArgumentError, "Missing the required parameter 'index' when calling DefaultApi.v1_indexes_index_get"
+      end
+      # resource path
+      local_var_path = '/v1/indexes/{index}'.sub('{' + 'index' + '}', CGI.escape(index.to_s))
+
+      # query parameters
+      query_params = opts[:query_params] || {}
+
+      # header parameters
+      header_params = opts[:header_params] || {}
+      # HTTP header 'Accept' (if needed)
+      header_params['Accept'] = @api_client.select_header_accept(['application/json; charset=utf-8'])
+
+      # form parameters
+      form_params = opts[:form_params] || {}
+
+      # http body (model)
+      post_body = opts[:debug_body]
+
+      # return_type
+      return_type = opts[:debug_return_type] || 'Array<IndexMeta>'
+
+      # auth_names
+      auth_names = opts[:debug_auth_names] || []
+
+      new_options = opts.merge(
+        :operation => :"DefaultApi.v1_indexes_index_get",
+        :header_params => header_params,
+        :query_params => query_params,
+        :form_params => form_params,
+        :body => post_body,
+        :auth_names => auth_names,
+        :return_type => return_type
+      )
+
+      data, status_code, headers = @api_client.call_api(:GET, local_var_path, new_options)
+      if @api_client.config.debugging
+        @api_client.config.logger.debug "API called: DefaultApi#v1_indexes_index_get\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}"
+      end
+      return data, status_code, headers
+    end
+
+    # @param index [String] 
+    # @param schema [String] 
+    # @param [Hash] opts the optional parameters
+    # @option opts [String] :sort_by 
+    # @return [IndexMeta]
+    def v1_indexes_index_post(index, schema, opts = {})
+      data, _status_code, _headers = v1_indexes_index_post_with_http_info(index, schema, opts)
+      data
+    end
+
+    # @param index [String] 
+    # @param schema [String] 
+    # @param [Hash] opts the optional parameters
+    # @option opts [String] :sort_by 
+    # @return [Array<(IndexMeta, Integer, Hash)>] IndexMeta data, response status code and response headers
+    def v1_indexes_index_post_with_http_info(index, schema, opts = {})
+      if @api_client.config.debugging
+        @api_client.config.logger.debug 'Calling API: DefaultApi.v1_indexes_index_post ...'
+      end
+      # verify the required parameter 'index' is set
+      if @api_client.config.client_side_validation && index.nil?
+        fail ArgumentError, "Missing the required parameter 'index' when calling DefaultApi.v1_indexes_index_post"
+      end
+      # verify the required parameter 'schema' is set
+      if @api_client.config.client_side_validation && schema.nil?
+        fail ArgumentError, "Missing the required parameter 'schema' when calling DefaultApi.v1_indexes_index_post"
+      end
+      # resource path
+      local_var_path = '/v1/indexes/{index}'.sub('{' + 'index' + '}', CGI.escape(index.to_s))
+
+      # query parameters
+      query_params = opts[:query_params] || {}
+      query_params[:'schema'] = schema
+      query_params[:'sort_by'] = opts[:'sort_by'] if !opts[:'sort_by'].nil?
+
+      # header parameters
+      header_params = opts[:header_params] || {}
+      # HTTP header 'Accept' (if needed)
+      header_params['Accept'] = @api_client.select_header_accept(['application/json; charset=utf-8'])
+
+      # form parameters
+      form_params = opts[:form_params] || {}
+
+      # http body (model)
+      post_body = opts[:debug_body]
+
+      # return_type
+      return_type = opts[:debug_return_type] || 'IndexMeta'
+
+      # auth_names
+      auth_names = opts[:debug_auth_names] || []
+
+      new_options = opts.merge(
+        :operation => :"DefaultApi.v1_indexes_index_post",
+        :header_params => header_params,
+        :query_params => query_params,
+        :form_params => form_params,
+        :body => post_body,
+        :auth_names => auth_names,
+        :return_type => return_type
+      )
+
+      data, status_code, headers = @api_client.call_api(:POST, local_var_path, new_options)
+      if @api_client.config.debugging
+        @api_client.config.logger.debug "API called: DefaultApi#v1_indexes_index_post\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}"
+      end
+      return data, status_code, headers
+    end
+
+    # @param index [String] 
+    # @param q [String] 
+    # @param [Hash] opts the optional parameters
+    # @return [Array<SubstructureSearchHit>]
+    def v1_indexes_index_search_substructure_get(index, q, opts = {})
+      data, _status_code, _headers = v1_indexes_index_search_substructure_get_with_http_info(index, q, opts)
+      data
+    end
+
+    # @param index [String] 
+    # @param q [String] 
+    # @param [Hash] opts the optional parameters
+    # @return [Array<(Array<SubstructureSearchHit>, Integer, Hash)>] Array<SubstructureSearchHit> data, response status code and response headers
+    def v1_indexes_index_search_substructure_get_with_http_info(index, q, opts = {})
+      if @api_client.config.debugging
+        @api_client.config.logger.debug 'Calling API: DefaultApi.v1_indexes_index_search_substructure_get ...'
+      end
+      # verify the required parameter 'index' is set
+      if @api_client.config.client_side_validation && index.nil?
+        fail ArgumentError, "Missing the required parameter 'index' when calling DefaultApi.v1_indexes_index_search_substructure_get"
+      end
+      # verify the required parameter 'q' is set
+      if @api_client.config.client_side_validation && q.nil?
+        fail ArgumentError, "Missing the required parameter 'q' when calling DefaultApi.v1_indexes_index_search_substructure_get"
+      end
+      # resource path
+      local_var_path = '/v1/indexes/{index}/search/substructure'.sub('{' + 'index' + '}', CGI.escape(index.to_s))
+
+      # query parameters
+      query_params = opts[:query_params] || {}
+      query_params[:'q'] = q
+
+      # header parameters
+      header_params = opts[:header_params] || {}
+      # HTTP header 'Accept' (if needed)
+      header_params['Accept'] = @api_client.select_header_accept(['application/json; charset=utf-8'])
+
+      # form parameters
+      form_params = opts[:form_params] || {}
+
+      # http body (model)
+      post_body = opts[:debug_body]
+
+      # return_type
+      return_type = opts[:debug_return_type] || 'Array<SubstructureSearchHit>'
+
+      # auth_names
+      auth_names = opts[:debug_auth_names] || []
+
+      new_options = opts.merge(
+        :operation => :"DefaultApi.v1_indexes_index_search_substructure_get",
+        :header_params => header_params,
+        :query_params => query_params,
+        :form_params => form_params,
+        :body => post_body,
+        :auth_names => auth_names,
+        :return_type => return_type
+      )
+
+      data, status_code, headers = @api_client.call_api(:GET, local_var_path, new_options)
+      if @api_client.config.debugging
+        @api_client.config.logger.debug "API called: DefaultApi#v1_indexes_index_search_substructure_get\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}"
+      end
+      return data, status_code, headers
+    end
+
+    # @param [Hash] opts the optional parameters
+    # @return [Array<Schema>]
+    def v1_schemas_get(opts = {})
+      data, _status_code, _headers = v1_schemas_get_with_http_info(opts)
+      data
+    end
+
+    # @param [Hash] opts the optional parameters
+    # @return [Array<(Array<Schema>, Integer, Hash)>] Array<Schema> data, response status code and response headers
+    def v1_schemas_get_with_http_info(opts = {})
+      if @api_client.config.debugging
+        @api_client.config.logger.debug 'Calling API: DefaultApi.v1_schemas_get ...'
+      end
+      # resource path
+      local_var_path = '/v1/schemas'
+
+      # query parameters
+      query_params = opts[:query_params] || {}
+
+      # header parameters
+      header_params = opts[:header_params] || {}
+      # HTTP header 'Accept' (if needed)
+      header_params['Accept'] = @api_client.select_header_accept(['application/json; charset=utf-8'])
+
+      # form parameters
+      form_params = opts[:form_params] || {}
+
+      # http body (model)
+      post_body = opts[:debug_body]
+
+      # return_type
+      return_type = opts[:debug_return_type] || 'Array<Schema>'
+
+      # auth_names
+      auth_names = opts[:debug_auth_names] || []
+
+      new_options = opts.merge(
+        :operation => :"DefaultApi.v1_schemas_get",
+        :header_params => header_params,
+        :query_params => query_params,
+        :form_params => form_params,
+        :body => post_body,
+        :auth_names => auth_names,
+        :return_type => return_type
+      )
+
+      data, status_code, headers = @api_client.call_api(:GET, local_var_path, new_options)
+      if @api_client.config.debugging
+        @api_client.config.logger.debug "API called: DefaultApi#v1_schemas_get\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}"
+      end
+      return data, status_code, headers
+    end
+
     # @param smile [Array<Smile>] 
     # @param [Hash] opts the optional parameters
     # @return [Array<StandardizedSmile>]
-    def standardize_post(smile, opts = {})
-      data, _status_code, _headers = standardize_post_with_http_info(smile, opts)
+    def v1_standardize_post(smile, opts = {})
+      data, _status_code, _headers = v1_standardize_post_with_http_info(smile, opts)
       data
     end
 
     # @param smile [Array<Smile>] 
     # @param [Hash] opts the optional parameters
     # @return [Array<(Array<StandardizedSmile>, Integer, Hash)>] Array<StandardizedSmile> data, response status code and response headers
-    def standardize_post_with_http_info(smile, opts = {})
+    def v1_standardize_post_with_http_info(smile, opts = {})
       if @api_client.config.debugging
-        @api_client.config.logger.debug 'Calling API: DefaultApi.standardize_post ...'
+        @api_client.config.logger.debug 'Calling API: DefaultApi.v1_standardize_post ...'
       end
       # verify the required parameter 'smile' is set
       if @api_client.config.client_side_validation && smile.nil?
-        fail ArgumentError, "Missing the required parameter 'smile' when calling DefaultApi.standardize_post"
+        fail ArgumentError, "Missing the required parameter 'smile' when calling DefaultApi.v1_standardize_post"
       end
       # resource path
-      local_var_path = '/standardize'
+      local_var_path = '/v1/standardize'
 
       # query parameters
       query_params = opts[:query_params] || {}
@@ -67,7 +437,7 @@ module Cheminee
       auth_names = opts[:debug_auth_names] || []
 
       new_options = opts.merge(
-        :operation => :"DefaultApi.standardize_post",
+        :operation => :"DefaultApi.v1_standardize_post",
         :header_params => header_params,
         :query_params => query_params,
         :form_params => form_params,
@@ -78,7 +448,7 @@ module Cheminee
 
       data, status_code, headers = @api_client.call_api(:POST, local_var_path, new_options)
       if @api_client.config.debugging
-        @api_client.config.logger.debug "API called: DefaultApi#standardize_post\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}"
+        @api_client.config.logger.debug "API called: DefaultApi#v1_standardize_post\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}"
       end
       return data, status_code, headers
     end

data/lib/cheminee/api_client.rb

@@ -6,7 +6,7 @@
 The version of the OpenAPI document: 1.0
 
 Generated by: https://openapi-generator.tech
-OpenAPI Generator version: 7.0.0-SNAPSHOT
+OpenAPI Generator version: 7.1.0-SNAPSHOT
 
 =end
 
@@ -17,6 +17,7 @@ require 'tempfile'
 require 'time'
 require 'typhoeus'
 
+
 module Cheminee
   class ApiClient
     # The Configuration object holding settings to be used in the API client.
@@ -221,7 +222,7 @@ module Cheminee
       return nil if body.nil? || body.empty?
 
       # return response body directly for String return type
-      return body if return_type == 'String'
+      return body.to_s if return_type == 'String'
 
       # ensuring a default content type
       content_type = response.headers['Content-Type'] || 'application/json'

data/lib/cheminee/api_error.rb

@@ -6,7 +6,7 @@
 The version of the OpenAPI document: 1.0
 
 Generated by: https://openapi-generator.tech
-OpenAPI Generator version: 7.0.0-SNAPSHOT
+OpenAPI Generator version: 7.1.0-SNAPSHOT
 
 =end
 

data/lib/cheminee/configuration.rb

@@ -6,7 +6,7 @@
 The version of the OpenAPI document: 1.0
 
 Generated by: https://openapi-generator.tech
-OpenAPI Generator version: 7.0.0-SNAPSHOT
+OpenAPI Generator version: 7.1.0-SNAPSHOT
 
 =end
 
@@ -151,7 +151,7 @@ module Cheminee
     def initialize
       @scheme = 'http'
       @host = 'localhost:3000'
-      @base_path = '/api/v1'
+      @base_path = '/api'
       @server_index = nil
       @server_operation_index = {}
       @server_variables = {}
@@ -222,8 +222,8 @@ module Cheminee
 
     # Gets access_token using access_token_getter or uses the static access_token
     def access_token_with_refresh
-        return access_token if access_token_getter.nil?
-        access_token_getter.call
+      return access_token if access_token_getter.nil?
+      access_token_getter.call
     end
 
     # Gets Basic Auth token string
@@ -241,7 +241,7 @@ module Cheminee
     def server_settings
       [
         {
-          url: "http://localhost:3000/api/v1",
+          url: "http://localhost:3000/api",
           description: "No description provided",
         }
       ]
@@ -286,5 +286,6 @@ module Cheminee
       url
     end
 
+
   end
 end