cheminee 0.0.15 → 0.1.5

data/lib/cheminee/models/schema.rb

@@ -0,0 +1,233 @@
+=begin
+#Cheminée
+
+#Cheminée: The Chemical Structure Search Engine
+
+The version of the OpenAPI document: 1.0
+
+Generated by: https://openapi-generator.tech
+OpenAPI Generator version: 7.1.0-SNAPSHOT
+
+=end
+
+require 'date'
+require 'time'
+
+module Cheminee
+  class Schema
+    attr_accessor :name
+
+    attr_accessor :schema
+
+    # Attribute mapping from ruby-style variable name to JSON key.
+    def self.attribute_map
+      {
+        :'name' => :'name',
+        :'schema' => :'schema'
+      }
+    end
+
+    # Returns all the JSON keys this model knows about
+    def self.acceptable_attributes
+      attribute_map.values
+    end
+
+    # Attribute type mapping.
+    def self.openapi_types
+      {
+        :'name' => :'String',
+        :'schema' => :'Object'
+      }
+    end
+
+    # List of attributes with nullable: true
+    def self.openapi_nullable
+      Set.new([
+        :'schema'
+      ])
+    end
+
+    # Initializes the object
+    # @param [Hash] attributes Model attributes in the form of hash
+    def initialize(attributes = {})
+      if (!attributes.is_a?(Hash))
+        fail ArgumentError, "The input argument (attributes) must be a hash in `Cheminee::Schema` initialize method"
+      end
+
+      # check to see if the attribute exists and convert string to symbol for hash key
+      attributes = attributes.each_with_object({}) { |(k, v), h|
+        if (!self.class.attribute_map.key?(k.to_sym))
+          fail ArgumentError, "`#{k}` is not a valid attribute in `Cheminee::Schema`. Please check the name to make sure it's valid. List of attributes: " + self.class.attribute_map.keys.inspect
+        end
+        h[k.to_sym] = v
+      }
+
+      if attributes.key?(:'name')
+        self.name = attributes[:'name']
+      else
+        self.name = nil
+      end
+
+      if attributes.key?(:'schema')
+        self.schema = attributes[:'schema']
+      else
+        self.schema = nil
+      end
+    end
+
+    # Show invalid properties with the reasons. Usually used together with valid?
+    # @return Array for valid properties with the reasons
+    def list_invalid_properties
+      warn '[DEPRECATED] the `list_invalid_properties` method is obsolete'
+      invalid_properties = Array.new
+      if @name.nil?
+        invalid_properties.push('invalid value for "name", name cannot be nil.')
+      end
+
+      invalid_properties
+    end
+
+    # Check to see if the all the properties in the model are valid
+    # @return true if the model is valid
+    def valid?
+      warn '[DEPRECATED] the `valid?` method is obsolete'
+      return false if @name.nil?
+      true
+    end
+
+    # Checks equality by comparing each attribute.
+    # @param [Object] Object to be compared
+    def ==(o)
+      return true if self.equal?(o)
+      self.class == o.class &&
+          name == o.name &&
+          schema == o.schema
+    end
+
+    # @see the `==` method
+    # @param [Object] Object to be compared
+    def eql?(o)
+      self == o
+    end
+
+    # Calculates hash code according to all attributes.
+    # @return [Integer] Hash code
+    def hash
+      [name, schema].hash
+    end
+
+    # Builds the object from hash
+    # @param [Hash] attributes Model attributes in the form of hash
+    # @return [Object] Returns the model itself
+    def self.build_from_hash(attributes)
+      return nil unless attributes.is_a?(Hash)
+      attributes = attributes.transform_keys(&:to_sym)
+      transformed_hash = {}
+      openapi_types.each_pair do |key, type|
+        if attributes.key?(attribute_map[key]) && attributes[attribute_map[key]].nil?
+          transformed_hash["#{key}"] = nil
+        elsif type =~ /\AArray<(.*)>/i
+          # check to ensure the input is an array given that the attribute
+          # is documented as an array but the input is not
+          if attributes[attribute_map[key]].is_a?(Array)
+            transformed_hash["#{key}"] = attributes[attribute_map[key]].map { |v| _deserialize($1, v) }
+          end
+        elsif !attributes[attribute_map[key]].nil?
+          transformed_hash["#{key}"] = _deserialize(type, attributes[attribute_map[key]])
+        end
+      end
+      new(transformed_hash)
+    end
+
+    # Deserializes the data based on type
+    # @param string type Data type
+    # @param string value Value to be deserialized
+    # @return [Object] Deserialized data
+    def self._deserialize(type, value)
+      case type.to_sym
+      when :Time
+        Time.parse(value)
+      when :Date
+        Date.parse(value)
+      when :String
+        value.to_s
+      when :Integer
+        value.to_i
+      when :Float
+        value.to_f
+      when :Boolean
+        if value.to_s =~ /\A(true|t|yes|y|1)\z/i
+          true
+        else
+          false
+        end
+      when :Object
+        # generic object (usually a Hash), return directly
+        value
+      when /\AArray<(?<inner_type>.+)>\z/
+        inner_type = Regexp.last_match[:inner_type]
+        value.map { |v| _deserialize(inner_type, v) }
+      when /\AHash<(?<k_type>.+?), (?<v_type>.+)>\z/
+        k_type = Regexp.last_match[:k_type]
+        v_type = Regexp.last_match[:v_type]
+        {}.tap do |hash|
+          value.each do |k, v|
+            hash[_deserialize(k_type, k)] = _deserialize(v_type, v)
+          end
+        end
+      else # model
+        # models (e.g. Pet) or oneOf
+        klass = Cheminee.const_get(type)
+        klass.respond_to?(:openapi_one_of) ? klass.build(value) : klass.build_from_hash(value)
+      end
+    end
+
+    # Returns the string representation of the object
+    # @return [String] String presentation of the object
+    def to_s
+      to_hash.to_s
+    end
+
+    # to_body is an alias to to_hash (backward compatibility)
+    # @return [Hash] Returns the object in the form of hash
+    def to_body
+      to_hash
+    end
+
+    # Returns the object in the form of hash
+    # @return [Hash] Returns the object in the form of hash
+    def to_hash
+      hash = {}
+      self.class.attribute_map.each_pair do |attr, param|
+        value = self.send(attr)
+        if value.nil?
+          is_nullable = self.class.openapi_nullable.include?(attr)
+          next if !is_nullable || (is_nullable && !instance_variable_defined?(:"@#{attr}"))
+        end
+
+        hash[param] = _to_hash(value)
+      end
+      hash
+    end
+
+    # Outputs non-array value in the form of hash
+    # For object, use to_hash. Otherwise, just return the value
+    # @param [Object] value Any valid value
+    # @return [Hash] Returns the value in the form of hash
+    def _to_hash(value)
+      if value.is_a?(Array)
+        value.compact.map { |v| _to_hash(v) }
+      elsif value.is_a?(Hash)
+        {}.tap do |hash|
+          value.each { |k, v| hash[k] = _to_hash(v) }
+        end
+      elsif value.respond_to? :to_hash
+        value.to_hash
+      else
+        value
+      end
+    end
+
+  end
+
+end

data/lib/cheminee/models/smile.rb

@@ -6,7 +6,7 @@
 The version of the OpenAPI document: 1.0
 
 Generated by: https://openapi-generator.tech
-OpenAPI Generator version: 7.0.0-SNAPSHOT
+OpenAPI Generator version: 7.1.0-SNAPSHOT
 
 =end
 

data/lib/cheminee/models/standardized_smile.rb

@@ -6,7 +6,7 @@
 The version of the OpenAPI document: 1.0
 
 Generated by: https://openapi-generator.tech
-OpenAPI Generator version: 7.0.0-SNAPSHOT
+OpenAPI Generator version: 7.1.0-SNAPSHOT
 
 =end
 

data/lib/cheminee/models/substructure_search_hit.rb

@@ -0,0 +1,265 @@
+=begin
+#Cheminée
+
+#Cheminée: The Chemical Structure Search Engine
+
+The version of the OpenAPI document: 1.0
+
+Generated by: https://openapi-generator.tech
+OpenAPI Generator version: 7.1.0-SNAPSHOT
+
+=end
+
+require 'date'
+require 'time'
+
+module Cheminee
+  class SubstructureSearchHit
+    attr_accessor :extra_data
+
+    attr_accessor :smiles
+
+    attr_accessor :score
+
+    attr_accessor :query
+
+    # Attribute mapping from ruby-style variable name to JSON key.
+    def self.attribute_map
+      {
+        :'extra_data' => :'extra_data',
+        :'smiles' => :'smiles',
+        :'score' => :'score',
+        :'query' => :'query'
+      }
+    end
+
+    # Returns all the JSON keys this model knows about
+    def self.acceptable_attributes
+      attribute_map.values
+    end
+
+    # Attribute type mapping.
+    def self.openapi_types
+      {
+        :'extra_data' => :'Object',
+        :'smiles' => :'String',
+        :'score' => :'Float',
+        :'query' => :'String'
+      }
+    end
+
+    # List of attributes with nullable: true
+    def self.openapi_nullable
+      Set.new([
+        :'extra_data',
+      ])
+    end
+
+    # Initializes the object
+    # @param [Hash] attributes Model attributes in the form of hash
+    def initialize(attributes = {})
+      if (!attributes.is_a?(Hash))
+        fail ArgumentError, "The input argument (attributes) must be a hash in `Cheminee::SubstructureSearchHit` initialize method"
+      end
+
+      # check to see if the attribute exists and convert string to symbol for hash key
+      attributes = attributes.each_with_object({}) { |(k, v), h|
+        if (!self.class.attribute_map.key?(k.to_sym))
+          fail ArgumentError, "`#{k}` is not a valid attribute in `Cheminee::SubstructureSearchHit`. Please check the name to make sure it's valid. List of attributes: " + self.class.attribute_map.keys.inspect
+        end
+        h[k.to_sym] = v
+      }
+
+      if attributes.key?(:'extra_data')
+        self.extra_data = attributes[:'extra_data']
+      else
+        self.extra_data = nil
+      end
+
+      if attributes.key?(:'smiles')
+        self.smiles = attributes[:'smiles']
+      else
+        self.smiles = nil
+      end
+
+      if attributes.key?(:'score')
+        self.score = attributes[:'score']
+      else
+        self.score = nil
+      end
+
+      if attributes.key?(:'query')
+        self.query = attributes[:'query']
+      else
+        self.query = nil
+      end
+    end
+
+    # Show invalid properties with the reasons. Usually used together with valid?
+    # @return Array for valid properties with the reasons
+    def list_invalid_properties
+      warn '[DEPRECATED] the `list_invalid_properties` method is obsolete'
+      invalid_properties = Array.new
+      if @smiles.nil?
+        invalid_properties.push('invalid value for "smiles", smiles cannot be nil.')
+      end
+
+      if @score.nil?
+        invalid_properties.push('invalid value for "score", score cannot be nil.')
+      end
+
+      if @query.nil?
+        invalid_properties.push('invalid value for "query", query cannot be nil.')
+      end
+
+      invalid_properties
+    end
+
+    # Check to see if the all the properties in the model are valid
+    # @return true if the model is valid
+    def valid?
+      warn '[DEPRECATED] the `valid?` method is obsolete'
+      return false if @smiles.nil?
+      return false if @score.nil?
+      return false if @query.nil?
+      true
+    end
+
+    # Checks equality by comparing each attribute.
+    # @param [Object] Object to be compared
+    def ==(o)
+      return true if self.equal?(o)
+      self.class == o.class &&
+          extra_data == o.extra_data &&
+          smiles == o.smiles &&
+          score == o.score &&
+          query == o.query
+    end
+
+    # @see the `==` method
+    # @param [Object] Object to be compared
+    def eql?(o)
+      self == o
+    end
+
+    # Calculates hash code according to all attributes.
+    # @return [Integer] Hash code
+    def hash
+      [extra_data, smiles, score, query].hash
+    end
+
+    # Builds the object from hash
+    # @param [Hash] attributes Model attributes in the form of hash
+    # @return [Object] Returns the model itself
+    def self.build_from_hash(attributes)
+      return nil unless attributes.is_a?(Hash)
+      attributes = attributes.transform_keys(&:to_sym)
+      transformed_hash = {}
+      openapi_types.each_pair do |key, type|
+        if attributes.key?(attribute_map[key]) && attributes[attribute_map[key]].nil?
+          transformed_hash["#{key}"] = nil
+        elsif type =~ /\AArray<(.*)>/i
+          # check to ensure the input is an array given that the attribute
+          # is documented as an array but the input is not
+          if attributes[attribute_map[key]].is_a?(Array)
+            transformed_hash["#{key}"] = attributes[attribute_map[key]].map { |v| _deserialize($1, v) }
+          end
+        elsif !attributes[attribute_map[key]].nil?
+          transformed_hash["#{key}"] = _deserialize(type, attributes[attribute_map[key]])
+        end
+      end
+      new(transformed_hash)
+    end
+
+    # Deserializes the data based on type
+    # @param string type Data type
+    # @param string value Value to be deserialized
+    # @return [Object] Deserialized data
+    def self._deserialize(type, value)
+      case type.to_sym
+      when :Time
+        Time.parse(value)
+      when :Date
+        Date.parse(value)
+      when :String
+        value.to_s
+      when :Integer
+        value.to_i
+      when :Float
+        value.to_f
+      when :Boolean
+        if value.to_s =~ /\A(true|t|yes|y|1)\z/i
+          true
+        else
+          false
+        end
+      when :Object
+        # generic object (usually a Hash), return directly
+        value
+      when /\AArray<(?<inner_type>.+)>\z/
+        inner_type = Regexp.last_match[:inner_type]
+        value.map { |v| _deserialize(inner_type, v) }
+      when /\AHash<(?<k_type>.+?), (?<v_type>.+)>\z/
+        k_type = Regexp.last_match[:k_type]
+        v_type = Regexp.last_match[:v_type]
+        {}.tap do |hash|
+          value.each do |k, v|
+            hash[_deserialize(k_type, k)] = _deserialize(v_type, v)
+          end
+        end
+      else # model
+        # models (e.g. Pet) or oneOf
+        klass = Cheminee.const_get(type)
+        klass.respond_to?(:openapi_one_of) ? klass.build(value) : klass.build_from_hash(value)
+      end
+    end
+
+    # Returns the string representation of the object
+    # @return [String] String presentation of the object
+    def to_s
+      to_hash.to_s
+    end
+
+    # to_body is an alias to to_hash (backward compatibility)
+    # @return [Hash] Returns the object in the form of hash
+    def to_body
+      to_hash
+    end
+
+    # Returns the object in the form of hash
+    # @return [Hash] Returns the object in the form of hash
+    def to_hash
+      hash = {}
+      self.class.attribute_map.each_pair do |attr, param|
+        value = self.send(attr)
+        if value.nil?
+          is_nullable = self.class.openapi_nullable.include?(attr)
+          next if !is_nullable || (is_nullable && !instance_variable_defined?(:"@#{attr}"))
+        end
+
+        hash[param] = _to_hash(value)
+      end
+      hash
+    end
+
+    # Outputs non-array value in the form of hash
+    # For object, use to_hash. Otherwise, just return the value
+    # @param [Object] value Any valid value
+    # @return [Hash] Returns the value in the form of hash
+    def _to_hash(value)
+      if value.is_a?(Array)
+        value.compact.map { |v| _to_hash(v) }
+      elsif value.is_a?(Hash)
+        {}.tap do |hash|
+          value.each { |k, v| hash[k] = _to_hash(v) }
+        end
+      elsif value.respond_to? :to_hash
+        value.to_hash
+      else
+        value
+      end
+    end
+
+  end
+
+end

data/lib/cheminee/version.rb

@@ -6,10 +6,10 @@
 The version of the OpenAPI document: 1.0
 
 Generated by: https://openapi-generator.tech
-OpenAPI Generator version: 7.0.0-SNAPSHOT
+OpenAPI Generator version: 7.1.0-SNAPSHOT
 
 =end
 
 module Cheminee
-  VERSION = '0.0.15'
+  VERSION = '0.1.5'
 end

data/lib/cheminee.rb

@@ -6,7 +6,7 @@
 The version of the OpenAPI document: 1.0
 
 Generated by: https://openapi-generator.tech
-OpenAPI Generator version: 7.0.0-SNAPSHOT
+OpenAPI Generator version: 7.1.0-SNAPSHOT
 
 =end
 
@@ -17,8 +17,14 @@ require 'cheminee/version'
 require 'cheminee/configuration'
 
 # Models
+require 'cheminee/models/create_index_error'
+require 'cheminee/models/get_indexes_response_error'
+require 'cheminee/models/index_meta'
+require 'cheminee/models/list_index_response_err'
+require 'cheminee/models/schema'
 require 'cheminee/models/smile'
 require 'cheminee/models/standardized_smile'
+require 'cheminee/models/substructure_search_hit'
 
 # APIs
 require 'cheminee/api/default_api'

data/spec/api_client_spec.rb

@@ -6,7 +6,7 @@
 The version of the OpenAPI document: 1.0
 
 Generated by: https://openapi-generator.tech
-OpenAPI Generator version: 7.0.0-SNAPSHOT
+OpenAPI Generator version: 7.1.0-SNAPSHOT
 
 =end
 

data/spec/configuration_spec.rb

@@ -6,7 +6,7 @@
 The version of the OpenAPI document: 1.0
 
 Generated by: https://openapi-generator.tech
-OpenAPI Generator version: 7.0.0-SNAPSHOT
+OpenAPI Generator version: 7.1.0-SNAPSHOT
 
 =end
 
@@ -18,7 +18,7 @@ describe Cheminee::Configuration do
   before(:each) do
     # uncomment below to setup host and base_path
     # require 'URI'
-    # uri = URI.parse("http://localhost:3000/api/v1")
+    # uri = URI.parse("http://localhost:3000/api")
     # Cheminee.configure do |c|
     #   c.host = uri.host
     #   c.base_path = uri.path
@@ -28,14 +28,14 @@ describe Cheminee::Configuration do
   describe '#base_url' do
     it 'should have the default value' do
       # uncomment below to test default value of the base path
-      # expect(config.base_url).to eq("http://localhost:3000/api/v1")
+      # expect(config.base_url).to eq("http://localhost:3000/api")
     end
 
     it 'should remove trailing slashes' do
       [nil, '', '/', '//'].each do |base_path|
         config.base_path = base_path
         # uncomment below to test trailing slashes
-        # expect(config.base_url).to eq("http://localhost:3000/api/v1")
+        # expect(config.base_url).to eq("http://localhost:3000/api")
       end
     end
   end

data/spec/models/create_index_error_spec.rb

@@ -0,0 +1,36 @@
+=begin
+#Cheminée
+
+#Cheminée: The Chemical Structure Search Engine
+
+The version of the OpenAPI document: 1.0
+
+Generated by: https://openapi-generator.tech
+OpenAPI Generator version: 7.1.0-SNAPSHOT
+
+=end
+
+require 'spec_helper'
+require 'json'
+require 'date'
+
+# Unit tests for Cheminee::CreateIndexError
+# Automatically generated by openapi-generator (https://openapi-generator.tech)
+# Please update as you see appropriate
+describe Cheminee::CreateIndexError do
+  let(:instance) { Cheminee::CreateIndexError.new }
+
+  describe 'test an instance of CreateIndexError' do
+    it 'should create an instance of CreateIndexError' do
+      # uncomment below to test the instance creation
+      #expect(instance).to be_instance_of(Cheminee::CreateIndexError)
+    end
+  end
+
+  describe 'test attribute "error"' do
+    it 'should work' do
+      # assertion here. ref: https://rspec.info/features/3-12/rspec-expectations/built-in-matchers/
+    end
+  end
+
+end

data/spec/models/get_indexes_response_error_spec.rb

@@ -0,0 +1,36 @@
+=begin
+#Cheminée
+
+#Cheminée: The Chemical Structure Search Engine
+
+The version of the OpenAPI document: 1.0
+
+Generated by: https://openapi-generator.tech
+OpenAPI Generator version: 7.1.0-SNAPSHOT
+
+=end
+
+require 'spec_helper'
+require 'json'
+require 'date'
+
+# Unit tests for Cheminee::GetIndexesResponseError
+# Automatically generated by openapi-generator (https://openapi-generator.tech)
+# Please update as you see appropriate
+describe Cheminee::GetIndexesResponseError do
+  let(:instance) { Cheminee::GetIndexesResponseError.new }
+
+  describe 'test an instance of GetIndexesResponseError' do
+    it 'should create an instance of GetIndexesResponseError' do
+      # uncomment below to test the instance creation
+      #expect(instance).to be_instance_of(Cheminee::GetIndexesResponseError)
+    end
+  end
+
+  describe 'test attribute "error"' do
+    it 'should work' do
+      # assertion here. ref: https://rspec.info/features/3-12/rspec-expectations/built-in-matchers/
+    end
+  end
+
+end