checkm 0.0.4 → 0.0.6

data/.gitignore

@@ -0,0 +1,42 @@
+# rcov generated
+coverage
+
+# rdoc generated
+rdoc
+
+# yard generated
+doc
+.yardoc
+
+# bundler
+.bundle
+
+# jeweler generated
+pkg
+
+# Have editor/IDE/OS specific files you need to ignore? Consider using a global gitignore: 
+#
+# * Create a file at ~/.gitignore
+# * Include files you want ignored
+# * Run: git config --global core.excludesfile ~/.gitignore
+#
+# After doing this, these files will be ignored in all your git projects,
+# saving you from having to 'pollute' every project you touch with them
+#
+# Not sure what to needs to be ignored for particular editors/OSes? Here's some ideas to get you started. (Remember, remove the leading # of the line)
+#
+# For MacOS:
+#
+#.DS_Store
+#
+# For TextMate
+#*.tmproj
+#tmtags
+#
+# For emacs:
+#*~
+#\#*
+#.\#*
+#
+# For vim:
+#*.swp

data/Gemfile

@@ -1,13 +1,3 @@
 source "http://rubygems.org"
-# Add dependencies required to use your gem here.
-# Example:
-#   gem "activesupport", ">= 2.3.5"
+gemspec
 
-# Add dependencies to develop your gem here.
-# Include everything needed to run rake, tests, features, etc.
-group :development do
-  gem "shoulda", ">= 0"
-  gem "bundler", "~> 1.0.0"
-  gem "jeweler", "~> 1.5.1"
-  gem "rcov", ">= 0"
-end

data/LICENSE.txt

@@ -1,20 +1,13 @@
-Copyright (c) 2010 Chris Beer
+Copyright (c) 2011 Chris Beer
 
-Permission is hereby granted, free of charge, to any person obtaining
-a copy of this software and associated documentation files (the
-"Software"), to deal in the Software without restriction, including
-without limitation the rights to use, copy, modify, merge, publish,
-distribute, sublicense, and/or sell copies of the Software, and to
-permit persons to whom the Software is furnished to do so, subject to
-the following conditions:
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
 
-The above copyright notice and this permission notice shall be
-included in all copies or substantial portions of the Software.
+    http://www.apache.org/licenses/LICENSE-2.0
 
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
-EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
-MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
-NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
-LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
-OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
-WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.

data/Rakefile

@@ -1,5 +1,7 @@
+require 'rake'
 require 'rubygems'
 require 'bundler'
+require 'rspec/core/rake_task'
 begin
   Bundler.setup(:default, :development)
 rescue Bundler::BundlerError => e
@@ -7,46 +9,35 @@ rescue Bundler::BundlerError => e
   $stderr.puts "Run `bundle install` to install missing gems"
   exit e.status_code
 end
-require 'rake'
-
-require 'jeweler'
-Jeweler::Tasks.new do |gem|
-  # gem is a Gem::Specification... see http://docs.rubygems.org/read/chapter/20 for more options
-  gem.name = "checkm"
-  gem.homepage = "http://github.com/cbeer/checkm"
-  gem.license = "MIT"
-  gem.summary = "Checkm is a general-purpose text-based file manifest format"
-  gem.email = "chris@cbeer.info"
-  gem.authors = ["Chris Beer"]
-  # Include your dependencies below. Runtime dependencies are required when using your gem,
-  # and development dependencies are only needed for development (ie running rake tasks, tests, etc)
-  #  gem.add_runtime_dependency 'jabber4r', '> 0.1'
-  #  gem.add_development_dependency 'rspec', '> 1.2.3'
-end
-Jeweler::RubygemsDotOrgTasks.new
 
-require 'rake/testtask'
-Rake::TestTask.new(:test) do |test|
-  test.libs << 'lib' << 'test'
-  test.pattern = 'test/**/test_*.rb'
-  test.verbose = true
-end
-
-require 'rcov/rcovtask'
-Rcov::RcovTask.new do |test|
-  test.libs << 'test'
-  test.pattern = 'test/**/test_*.rb'
-  test.verbose = true
-end
+Bundler::GemHelper.install_tasks
 
-task :default => :test
+namespace :namaste do
+  RSpec::Core::RakeTask.new(:rspec) do |t|
+    t.pattern = "./spec/**/*_spec.rb"
+    t.rcov = true
+    t.rcov_opts = ["--exclude", "gems\/,spec\/"]
+  end
 
-require 'rake/rdoctask'
-Rake::RDocTask.new do |rdoc|
-  version = File.exist?('VERSION') ? File.read('VERSION') : ""
+  # Use yard to build docs
+  begin
+    require 'yard'
+    require 'yard/rake/yardoc_task'
+    project_root = File.expand_path("#{File.dirname(__FILE__)}")
+    doc_destination = File.join(project_root, 'doc')
 
-  rdoc.rdoc_dir = 'rdoc'
-  rdoc.title = "checkm #{version}"
-  rdoc.rdoc_files.include('README*')
-  rdoc.rdoc_files.include('lib/**/*.rb')
+    YARD::Rake::YardocTask.new(:doc) do |yt|
+      yt.files   = Dir.glob(File.join(project_root, 'lib', '**', '*.rb')) + 
+                   [ File.join(project_root, 'README.textile') ]
+      yt.options = ['--output-dir', doc_destination, '--readme', 'README.textile']
+    end
+  rescue LoadError
+    desc "Generate YARD Documentation"
+    task :doc do
+      abort "Please install the YARD gem to generate rdoc."
+    end
+  end
 end
+
+desc "Run the rspec tests, aggregate coverage data, and build the Yard docs"
+task :hudson => ["namaste:rspec","namaste:doc"]

data/VERSION

@@ -1 +1 @@
-0.0.4
+0.0.6

data/checkm.gemspec

@@ -1,64 +1,28 @@
-# Generated by jeweler
-# DO NOT EDIT THIS FILE DIRECTLY
-# Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
 # -*- encoding: utf-8 -*-
 
+require File.join(File.dirname(__FILE__), "lib/checkm/version")
+
 Gem::Specification.new do |s|
   s.name = %q{checkm}
-  s.version = "0.0.4"
+  s.version = Checkm::VERSION
+  s.summary = "Checkm is a general-purpose text-based file manifest format "
+  s.description = "Checkm is a general-purpose text-based file manifest format "
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.authors = ["Chris Beer"]
-  s.date = %q{2010-11-27}
+  s.date = %q{2011-06-09}
   s.email = %q{chris@cbeer.info}
-  s.extra_rdoc_files = [
-    "LICENSE.txt",
-    "README.rdoc"
-  ]
-  s.files = [
-    ".document",
-    "Gemfile",
-    "Gemfile.lock",
-    "LICENSE.txt",
-    "README.rdoc",
-    "Rakefile",
-    "VERSION",
-    "checkm.gemspec",
-    "lib/checkm.rb",
-    "test/helper.rb",
-    "test/test_1/1",
-    "test/test_checkm.rb"
-  ]
-  s.homepage = %q{http://github.com/cbeer/checkm}
-  s.licenses = ["MIT"]
-  s.require_paths = ["lib"]
-  s.rubygems_version = %q{1.3.7}
-  s.summary = %q{Checkm is a general-purpose text-based file manifest format}
-  s.test_files = [
-    "test/helper.rb",
-    "test/test_checkm.rb"
-  ]
 
-  if s.respond_to? :specification_version then
-    current_version = Gem::Specification::CURRENT_SPECIFICATION_VERSION
-    s.specification_version = 3
+  s.files         = `git ls-files`.split("\n")
+  s.test_files    = `git ls-files -- {test,spec,features}/*`.split("\n")
+  s.executables   = `git ls-files -- bin/*`.split("\n").map{ |f| File.basename(f) }
+  s.require_paths = ["lib"]
 
-    if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
-      s.add_development_dependency(%q<shoulda>, [">= 0"])
-      s.add_development_dependency(%q<bundler>, ["~> 1.0.0"])
-      s.add_development_dependency(%q<jeweler>, ["~> 1.5.1"])
-      s.add_development_dependency(%q<rcov>, [">= 0"])
-    else
-      s.add_dependency(%q<shoulda>, [">= 0"])
-      s.add_dependency(%q<bundler>, ["~> 1.0.0"])
-      s.add_dependency(%q<jeweler>, ["~> 1.5.1"])
-      s.add_dependency(%q<rcov>, [">= 0"])
-    end
-  else
-    s.add_dependency(%q<shoulda>, [">= 0"])
-    s.add_dependency(%q<bundler>, ["~> 1.0.0"])
-    s.add_dependency(%q<jeweler>, ["~> 1.5.1"])
-    s.add_dependency(%q<rcov>, [">= 0"])
-  end
+  # Bundler will install these gems too if you've checked this out from source from git and run 'bundle install'
+  s.add_development_dependency "rake"
+  s.add_development_dependency "bundler"
+  s.add_development_dependency "rspec"
+  s.add_development_dependency 'rcov'
+  s.add_development_dependency 'yard'
 end
 

data/lib/checkm.rb

@@ -1,15 +1,23 @@
-require 'time'
+require 'checkm/manifest'
+require 'checkm/entry'
 
 module Checkm
+  # Size (in bytes) to read (in chunks) to compute checksums
   CHUNK_SIZE = 8*1024*1024
+
+  # Compute the checksum 'alg' for a file
+  # @param [File] file
+  # @param [String] alg md5, sha1, sha256, dir
   def self.checksum file, alg
       digest_alg = case alg
         when nil
           return true
         when /md5/
-           Digest::MD5.new if alg == 'md5'
+           Digest::MD5.new 
         when /sha1/
+          Digest::SHA1.new
         when /sha256/
+          Digest::SHA2.new(256)
         when /dir/
           return File.directory? file
         else 
@@ -21,163 +29,4 @@ module Checkm
       end
       digest_alg.hexdigest
   end
-
-  class Manifest
-    def self.parse str, args = {}
-      Manifest.new str, args
-    end
-
-    attr_reader :version
-    attr_reader :entries
-    attr_reader :fields
-    attr_reader :path
-
-    def initialize checkm, args = {}
-      @args = args
-      @version = nil
-      @checkm = checkm
-      @lines = checkm.split "\n"
-      @entries = []
-      @eof = false
-      @fields= nil
-      @path = args[:path]
-      @path ||= Dir.pwd
-      parse_lines 
-      # xxx error on empty entries?
-      @lines.unshift('#%checkm_0.7') and @version = '0.7' if @version.nil?
-
-    end
-
-    def valid?
-      return true if @entries.empty?
-      not @entries.map { |e| e.valid? }.any? { |b| b == false }
-    end
-
-    def add path, args = {}
-      line = Checkm::Entry.create path, args
-
-      Checkm::Manifest.new [@lines, line].flatten.join("\n"), @args
-    end
-
-    def remove path
-      Checkm::Manifest.new @lines.reject { |x| x =~ /^@?#{path}/ }.join("\n"), @args
-    end
-
-    def to_s
-      @lines.join("\n")
-    end
-
-    def to_hash
-      Hash[*@entries.map { |x| [x.sourcefileorurl, x] }.flatten]
-    end
-
-    private
-
-    def parse_lines
-      @lines.each do |line|
-        case line
-          when /^#%/
-            parse_header line
-	  when /^#/
-            parse_comment line
-	  when /^$/
-
-	  when /^@/
-	    parse_line line     
-	  else
-	    parse_line line     
-	end
-      end
-    end
-
-    def parse_header line
-      case line
-        when /^#%checkm/
-	  match = /^#%checkm_(\d+)\.(\d+)/.match line
-          @version = "#{match[1]}.#{match[2]}" if match
-	when /^#%eof/
-          @eof = true
-	when /^#%fields/
-          list = line.split('|')
-	  list.shift
-	  @fields = list.map { |v| v.strip.downcase }
-	when /^#%prefix/
-
-	when /^#%profile/
-
-      end
-    end
-    
-    def parse_comment line
-
-    end
-
-    def parse_line line
-      @entries << Entry.new(line, self)
-    end
-
-  end
-
-  class Entry
-    BASE_FIELDS = ['sourcefileorurl', 'alg', 'digest', 'length', 'modtime', 'targetfileorurl']
-    attr_reader :values
-
-    def self.create path, args = {}
-      base = args[:base] || Dir.pwd
-      alg = args[:alg] || 'md5'
-      file = File.new File.join(base, path)
-
-      "%s | %s | %s | %s | %s | %s" % [path, alg, Checkm.checksum(file, alg), File.size(file.path), file.mtime.utc.xmlschema, nil]
-    end
-
-    def initialize line, manifest = nil
-      @line = line.strip
-      @include = false
-      @fields = BASE_FIELDS
-      @fields = manifest.fields if manifest and manifest.fields
-      @values = line.split('|').map { |s| s.strip }
-      @manifest = manifest
-    end
-
-    def method_missing(sym, *args, &block)
-      @values[@fields.index(sym.to_s.downcase) || BASE_FIELDS.index(sym.to_s.downcase)] rescue nil
-    end
-
-
-    def valid?
-      return source_exists? && valid_checksum? && valid_multilevel? # xxx && valid_length? && valid_modtime?
-    end
-
-    private
-    def source
-      file = sourcefileorurl
-      file = file[1..-1] if file =~ /^@/
-      File.join(@manifest.path, file)
-    end
-
-    def source_exists?
-      return File.exists? source
-    end
-
-    def valid_checksum?
-      file = File.new source
-      checksum = Checkm.checksum(file, alg) 
-      checksum === true or checksum == digest
-    end
-
-
-    def valid_length?
-      throw NotImplementedError
-    end
-
-    def valid_modtime?
-      throw NotImplementedError
-    end
-
-    def valid_multilevel?
-      return true unless sourcefileorurl =~ /^@/
-
-      return Manifest.parse(open(source).read, File.dirname(source))
-    end
-  end
 end

data/lib/checkm/entry.rb

@@ -0,0 +1,64 @@
+require 'time'
+module Checkm  
+  class Entry
+    BASE_FIELDS = ['sourcefileorurl', 'alg', 'digest', 'length', 'modtime', 'targetfileorurl']
+    attr_reader :values
+  
+    def self.create path, args = {}
+      base = args[:base] || Dir.pwd
+      alg = args[:alg] || 'md5'
+      file = File.new File.join(base, path)
+  
+      "%s | %s | %s | %s | %s | %s" % [path, alg, Checkm.checksum(file, alg), File.size(file.path), file.mtime.utc.xmlschema, nil]
+    end
+  
+    def initialize line, manifest = nil
+      @line = line.strip
+      @include = false
+      @fields = BASE_FIELDS
+      @fields = manifest.fields if manifest and manifest.fields
+      @values = line.split('|').map { |s| s.strip }
+      @manifest = manifest
+    end
+  
+    def method_missing(sym, *args, &block)
+      @values[@fields.index(sym.to_s.downcase) || BASE_FIELDS.index(sym.to_s.downcase)] rescue nil
+    end
+  
+  
+    def valid?
+      return source_exists? && valid_checksum? && valid_multilevel? # xxx && valid_length? && valid_modtime?
+    end
+  
+    private
+    def source
+      file = sourcefileorurl
+      file = file[1..-1] if file =~ /^@/
+      File.join(@manifest.path, file)
+    end
+  
+    def source_exists?
+      return File.exists? source
+    end
+  
+    def valid_checksum?
+      file = File.new source
+      checksum = Checkm.checksum(file, alg) 
+      checksum === true or checksum == digest
+    end
+  
+  
+    def valid_length?
+      throw NotImplementedError
+    end
+  
+    def valid_modtime?
+      throw NotImplementedError
+    end
+  
+    def valid_multilevel?
+      return true unless sourcefileorurl =~ /^@/
+      return Manifest.parse(open(source).read, File.dirname(source))
+    end
+  end
+end

data/lib/checkm/manifest.rb

@@ -0,0 +1,96 @@
+module Checkm
+  class Manifest
+    def self.parse str, args = {}
+      Manifest.new str, args
+    end
+  
+    attr_reader :version
+    attr_reader :entries
+    attr_reader :fields
+    attr_reader :path
+  
+    def initialize checkm, args = {}
+      @args = args
+      @version = nil
+      @checkm = checkm
+      @lines = checkm.split "\n"
+      @entries = []
+      @eof = false
+      @fields= nil
+      @path = args[:path]
+      @path ||= Dir.pwd
+  
+      parse_lines 
+      # xxx error on empty entries?
+      @lines.unshift('#%checkm_0.7') and @version = '0.7' if @version.nil?
+  
+    end
+  
+    def valid?
+      return true if @entries.empty?
+      not @entries.map { |e| e.valid? }.any? { |b| b == false }
+    end
+  
+    def add path, args = {}
+      line = Checkm::Entry.create path, args
+  
+      Checkm::Manifest.new [@lines, line].flatten.join("\n"), @args
+    end
+  
+    def remove path
+      Checkm::Manifest.new @lines.reject { |x| x =~ /^@?#{path}/ }.join("\n"), @args
+    end
+  
+    def to_s
+      @lines.join("\n")
+    end
+  
+    def to_hash
+      Hash[*@entries.map { |x| [x.sourcefileorurl, x] }.flatten]
+    end
+  
+    private
+    def parse_lines
+      @lines.each do |line|
+        case line
+          when /^#%/
+            parse_header line
+          when /^#/
+            parse_comment line
+          when /^$/
+  
+          when /^@/
+            parse_line line     
+          else
+            parse_line line     
+        end
+      end
+    end
+  
+    def parse_header line
+      case line
+        when /^#%checkm/
+          match = /^#%checkm_(\d+)\.(\d+)/.match line
+          @version = "#{match[1]}.#{match[2]}" if match
+        when /^#%eof/
+          @eof = true
+        when /^#%fields/
+          list = line.split('|')
+          list.shift
+          @fields = list.map { |v| v.strip.downcase }
+        when /^#%prefix/
+  
+        when /^#%profile/
+  
+      end
+    end
+    
+    def parse_comment line
+  
+    end
+  
+    def parse_line line
+      @entries << Entry.new(line, self)
+    end
+  end
+end

data/lib/checkm/version.rb

@@ -0,0 +1,10 @@
+module Checkm
+  unless Checkm.const_defined? :VERSION
+    def self.version
+      @version ||= File.read(File.join(File.dirname(__FILE__), '..', '..', 'VERSION')).chomp
+    end
+
+    VERSION = self.version
+  end
+end
+

data/spec/checkm_spec.rb

@@ -0,0 +1,116 @@
+require File.expand_path(File.dirname(__FILE__) + '/spec_helper')
+
+describe "checkm" do
+  it "should be valid if empty" do
+    checkm = ''
+    res = Checkm::Manifest.parse(checkm)
+    res.entries.should be_empty
+    res.should be_valid
+  end
+
+  it "should ignore comments" do
+    checkm = '#'
+    res = Checkm::Manifest.parse(checkm)
+    res.entries.should be_empty
+    res.should be_valid
+  end
+
+  it "should parse the checkm version" do
+    checkm = '#%checkm_0.7'
+    res = Checkm::Manifest.parse(checkm)
+    res.entries.should be_empty
+    res.should be_valid
+    res.version.should == '0.7'
+  end
+
+  describe "simple checkm line" do 
+    before(:each) do 
+      @checkm = 'book/Chapter9.xml |   md5   |  49afbd86a1ca9f34b677a3f09655eae9'
+      @result = Checkm::Manifest.parse(@checkm)
+      @line = @result.entries.first
+    end
+
+    it "should parse one entry" do
+      @result.should have(1).entries
+    end
+
+    it "should parse a checkm line" do 
+      @line.values[0].should == 'book/Chapter9.xml'
+      @line.values[1].should == 'md5'
+      @line.values[2].should == '49afbd86a1ca9f34b677a3f09655eae9'
+    end 
+
+    it "should allow name-based lookups" do
+      @line.sourcefileorurl.should == 'book/Chapter9.xml'
+      @line.alg.should == 'md5'
+      @line.digest.should == '49afbd86a1ca9f34b677a3f09655eae9'
+    end
+  end
+
+  it "should support custom field names" do
+    checkm= '#%fields | testa | test b' + "\n" +
+            'book/Chapter9.xml |   md5   |  49afbd86a1ca9f34b677a3f09655eae9'
+    res = Checkm::Manifest.parse(checkm)
+
+    line = res.entries.first
+
+    line.sourcefileorurl.should ==  'book/Chapter9.xml'
+    line.testa.should == 'book/Chapter9.xml'
+    line.alg.should == 'md5'
+    line.send(:'test b').should == 'md5'
+    line.digest.should == '49afbd86a1ca9f34b677a3f09655eae9'
+  end
+
+  describe "validity check" do
+    it "should be valid if the file exists" do
+      checkm = '1 | md5 | b026324c6904b2a9cb4b88d6d61c81d1'
+      res = Checkm::Manifest.parse(checkm, :path => File.join(File.dirname(__FILE__), 'fixtures/test_1'))
+      res.should have(1).entries
+      res.should be_valid
+    end
+
+    it "should be valid if the directory exists" do
+      checkm = 'test_1 | dir'
+      res = Checkm::Manifest.parse(checkm, :path => File.join(File.dirname(__FILE__), 'fixtures'))
+      res.should have(1).entries
+      res.should be_valid
+    end
+
+    it "should be invalid if a file is missing" do
+      checkm = '2 | md5 | b026324c6904b2a9cb4b88d6d61c81d1'
+      res = Checkm::Manifest.parse(checkm, :path => File.join(File.dirname(__FILE__), 'fixtures/test_1'))
+      res.should have(1).entries
+      res.should_not be_valid
+    end
+
+    it "should be invalid if the checksum is different" do
+      checkm = '1 | md5 | zzz'
+      res = Checkm::Manifest.parse(checkm, :path => File.join(File.dirname(__FILE__), 'fixtures/test_1'))
+      res.should have(1).entries
+      res.should_not be_valid
+    end
+  end
+
+  describe "manipulate manifest" do
+    it "should support simple create" do
+      res = Checkm::Entry.create('LICENSE.txt')
+      res.should match( /LICENSE\.txt | md5 | 927368f89ca84dbec878a8d017f06443 | 1054 | \d{4}/)
+    end
+
+    it "should allow files to be added to an existing manifest" do
+      m = Checkm::Manifest.parse('')
+      res = m.add('LICENSE.txt')
+      res.should have(1).entries
+      res.should be_valid
+    end
+  end
+
+  it "should be serializable to a string" do
+    m = Checkm::Manifest.parse('')
+    n = m.add('LICENSE.txt')
+    lines = n.to_s.split "\n"
+    lines[0].should == '#%checkm_0.7'
+    lines[1].should match(/^LICENSE\.txt/)
+  end
+end
+

data/spec/spec_helper.rb

@@ -0,0 +1,2 @@
+require "rspec"
+require "checkm"

metadata

@@ -1,13 +1,13 @@
 --- !ruby/object:Gem::Specification 
 name: checkm
 version: !ruby/object:Gem::Version 
-  hash: 23
-  prerelease: false
+  hash: 19
+  prerelease: 
   segments: 
   - 0
   - 0
-  - 4
-  version: 0.0.4
+  - 6
+  version: 0.0.6
 platform: ruby
 authors: 
 - Chris Beer
@@ -15,14 +15,13 @@ autorequire:
 bindir: bin
 cert_chain: []
 
-date: 2010-11-27 00:00:00 -05:00
+date: 2011-06-09 00:00:00 -05:00
 default_executable: 
 dependencies: 
 - !ruby/object:Gem::Dependency 
-  type: :development
+  name: rake
   prerelease: false
-  name: shoulda
-  version_requirements: &id001 !ruby/object:Gem::Requirement 
+  requirement: &id001 !ruby/object:Gem::Requirement 
     none: false
     requirements: 
     - - ">="
@@ -31,44 +30,54 @@ dependencies:
         segments: 
         - 0
         version: "0"
-  requirement: *id001
-- !ruby/object:Gem::Dependency 
   type: :development
-  prerelease: false
+  version_requirements: *id001
+- !ruby/object:Gem::Dependency 
   name: bundler
-  version_requirements: &id002 !ruby/object:Gem::Requirement 
+  prerelease: false
+  requirement: &id002 !ruby/object:Gem::Requirement 
     none: false
     requirements: 
-    - - ~>
+    - - ">="
       - !ruby/object:Gem::Version 
-        hash: 23
+        hash: 3
         segments: 
-        - 1
-        - 0
         - 0
-        version: 1.0.0
-  requirement: *id002
-- !ruby/object:Gem::Dependency 
+        version: "0"
   type: :development
+  version_requirements: *id002
+- !ruby/object:Gem::Dependency 
+  name: rspec
   prerelease: false
-  name: jeweler
-  version_requirements: &id003 !ruby/object:Gem::Requirement 
+  requirement: &id003 !ruby/object:Gem::Requirement 
     none: false
     requirements: 
-    - - ~>
+    - - ">="
       - !ruby/object:Gem::Version 
-        hash: 1
+        hash: 3
         segments: 
-        - 1
-        - 5
-        - 1
-        version: 1.5.1
-  requirement: *id003
+        - 0
+        version: "0"
+  type: :development
+  version_requirements: *id003
 - !ruby/object:Gem::Dependency 
+  name: rcov
+  prerelease: false
+  requirement: &id004 !ruby/object:Gem::Requirement 
+    none: false
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        hash: 3
+        segments: 
+        - 0
+        version: "0"
   type: :development
+  version_requirements: *id004
+- !ruby/object:Gem::Dependency 
+  name: yard
   prerelease: false
-  name: rcov
-  version_requirements: &id004 !ruby/object:Gem::Requirement 
+  requirement: &id005 !ruby/object:Gem::Requirement 
     none: false
     requirements: 
     - - ">="
@@ -77,33 +86,37 @@ dependencies:
         segments: 
         - 0
         version: "0"
-  requirement: *id004
-description: 
+  type: :development
+  version_requirements: *id005
+description: "Checkm is a general-purpose text-based file manifest format "
 email: chris@cbeer.info
 executables: []
 
 extensions: []
 
-extra_rdoc_files: 
-- LICENSE.txt
-- README.rdoc
+extra_rdoc_files: []
+
 files: 
 - .document
+- .gitignore
 - Gemfile
-- Gemfile.lock
 - LICENSE.txt
-- README.rdoc
+- README.textile
 - Rakefile
 - VERSION
 - checkm.gemspec
 - lib/checkm.rb
-- test/helper.rb
-- test/test_1/1
-- test/test_checkm.rb
+- lib/checkm/entry.rb
+- lib/checkm/file.rb
+- lib/checkm/manifest.rb
+- lib/checkm/version.rb
+- spec/checkm_spec.rb
+- spec/fixtures/test_1/1
+- spec/spec_helper.rb
 has_rdoc: true
-homepage: http://github.com/cbeer/checkm
-licenses: 
-- MIT
+homepage: 
+licenses: []
+
 post_install_message: 
 rdoc_options: []
 
@@ -130,10 +143,11 @@ required_rubygems_version: !ruby/object:Gem::Requirement
 requirements: []
 
 rubyforge_project: 
-rubygems_version: 1.3.7
+rubygems_version: 1.5.3
 signing_key: 
 specification_version: 3
 summary: Checkm is a general-purpose text-based file manifest format
 test_files: 
-- test/helper.rb
-- test/test_checkm.rb
+- spec/checkm_spec.rb
+- spec/fixtures/test_1/1
+- spec/spec_helper.rb

data/Gemfile.lock

@@ -1,20 +0,0 @@
-GEM
-  remote: http://rubygems.org/
-  specs:
-    git (1.2.5)
-    jeweler (1.5.1)
-      bundler (~> 1.0.0)
-      git (>= 1.2.5)
-      rake
-    rake (0.8.7)
-    rcov (0.9.9)
-    shoulda (2.11.3)
-
-PLATFORMS
-  ruby
-
-DEPENDENCIES
-  bundler (~> 1.0.0)
-  jeweler (~> 1.5.1)
-  rcov
-  shoulda

data/test/helper.rb

@@ -1,18 +0,0 @@
-require 'rubygems'
-require 'bundler'
-begin
-  Bundler.setup(:default, :development)
-rescue Bundler::BundlerError => e
-  $stderr.puts e.message
-  $stderr.puts "Run `bundle install` to install missing gems"
-  exit e.status_code
-end
-require 'test/unit'
-require 'shoulda'
-
-$LOAD_PATH.unshift(File.join(File.dirname(__FILE__), '..', 'lib'))
-$LOAD_PATH.unshift(File.dirname(__FILE__))
-require 'checkm'
-
-class Test::Unit::TestCase
-end

data/test/test_checkm.rb

@@ -1,111 +0,0 @@
-require 'helper'
-
-class TestCheckm < Test::Unit::TestCase
-  def test_empty
-    checkm = ''
-    res = Checkm::Manifest.parse(checkm)
-    assert_equal(res.entries.empty?, true)
-    assert_equal(res.valid?, true)
-  end
-
-  def test_comment
-    checkm = '#'
-    res = Checkm::Manifest.parse(checkm)
-    assert_equal(res.entries.empty?, true)
-  end
-
-  def test_version
-    checkm = '#%checkm_0.7'
-    res = Checkm::Manifest.parse(checkm)
-    assert_equal(res.entries.empty?, true)
-    assert_equal(res.version, '0.7')
-  end
-
-  def test_parse_simple
-    checkm = 'book/Chapter9.xml |   md5   |  49afbd86a1ca9f34b677a3f09655eae9'
-    res = Checkm::Manifest.parse(checkm)
-    assert_equal(res.entries.length, 1)
-    assert_equal(res.entries.first.values[0], 'book/Chapter9.xml')
-    assert_equal(res.entries.first.values[1], 'md5')
-    assert_equal(res.entries.first.values[2], '49afbd86a1ca9f34b677a3f09655eae9')
-  end
-
-  def test_parse_named_fields
-    checkm = 'book/Chapter9.xml |   md5   |  49afbd86a1ca9f34b677a3f09655eae9'
-    res = Checkm::Manifest.parse(checkm)
-    assert_equal(res.entries.length, 1)
-    assert_equal(res.entries.first.sourcefileorurl, 'book/Chapter9.xml')
-    assert_equal(res.entries.first.alg, 'md5')
-    assert_equal(res.entries.first.digest, '49afbd86a1ca9f34b677a3f09655eae9')
-  end
-
-  def test_parse_custom_fields
-    checkm= '#%fields | testa | test b' + "\n" +
-            'book/Chapter9.xml |   md5   |  49afbd86a1ca9f34b677a3f09655eae9'
-
-	    
-    res = Checkm::Manifest.parse(checkm)
-    assert_equal(res.entries.length, 1)
-    assert_equal(res.entries.first.sourcefileorurl, 'book/Chapter9.xml')
-    assert_equal(res.entries.first.testa, 'book/Chapter9.xml')
-    assert_equal(res.entries.first.alg, 'md5')
-    assert_equal(res.entries.first.send(:'test b'), 'md5')
-    assert_equal(res.entries.first.digest, '49afbd86a1ca9f34b677a3f09655eae9')
-  end
-
-  def test_valid
-    checkm = '1 | md5 | b026324c6904b2a9cb4b88d6d61c81d1'
-    res = Checkm::Manifest.parse(checkm, :path => File.join(File.dirname(__FILE__), 'test_1'))
-    assert_equal(res.entries.length, 1)
-    assert_equal(res.entries.first.valid?, true)
-  end
-
-  def test_valid_dir
-    checkm = 'test_1 | dir'
-    res = Checkm::Manifest.parse(checkm, :path => File.join(File.dirname(__FILE__)))
-
-    assert_equal(res.entries.length, 1)
-    assert_equal(res.entries.first.valid?, true)
-  end
-
-  def test_invalid_missing_file
-    checkm = '2 | md5 | b026324c6904b2a9cb4b88d6d61c81d1'
-    res = Checkm::Manifest.parse(checkm, :path => File.join(File.dirname(__FILE__), 'test_1'))
-    assert_equal(res.entries.length, 1)
-    assert_equal(res.entries.first.valid?, false)
-  end
-
-  def test_invalid_bad_checksum
-    checkm = '1 | md5 | zzz'
-    res = Checkm::Manifest.parse(checkm, :path => File.join(File.dirname(__FILE__), 'test_1'))
-    assert_equal(res.entries.length, 1)
-    assert_equal(res.entries.first.valid?, false)
-  end
-
-  def test_create_entry
-    res = Checkm::Entry.create('LICENSE.txt')
-    assert_match( /LICENSE\.txt | md5 | 927368f89ca84dbec878a8d017f06443 | 1054 | \d{4}/, res)
-  end
-
-  def test_manifest_add
-    m = Checkm::Manifest.parse('')
-    n = m.add('LICENSE.txt')
-    assert_equal(n.entries.length, 1)
-    assert_equal(n.entries.first.valid?, true)
-  end
-
-  def test_manifest_add
-    m = Checkm::Manifest.parse('')
-    n = m.add('LICENSE.txt')
-    assert_equal(n.entries.length, 1)
-    assert_equal(n.entries.first.valid?, true)
-  end
-
-  def test_manifest_to_s
-    m = Checkm::Manifest.parse('')
-    n = m.add('LICENSE.txt')
-    lines = n.to_s.split "\n"
-    assert_equal(lines[0], '#%checkm_0.7')
-    assert_match(/^LICENSE\.txt/, lines[1])
-  end
-end