checkm 0.0.0

data/.document

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+lib/**/*.rb
+bin/*
+- 
+features/**/*.feature
+LICENSE.txt

data/Gemfile

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+source "http://rubygems.org"
+# Add dependencies required to use your gem here.
+# Example:
+#   gem "activesupport", ">= 2.3.5"
+
+# Add dependencies to develop your gem here.
+# Include everything needed to run rake, tests, features, etc.
+group :development do
+  gem "shoulda", ">= 0"
+  gem "bundler", "~> 1.0.0"
+  gem "jeweler", "~> 1.5.1"
+  gem "rcov", ">= 0"
+end

data/Gemfile.lock

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+GEM
+  remote: http://rubygems.org/
+  specs:
+    git (1.2.5)
+    jeweler (1.5.1)
+      bundler (~> 1.0.0)
+      git (>= 1.2.5)
+      rake
+    rake (0.8.7)
+    rcov (0.9.9)
+    shoulda (2.11.3)
+
+PLATFORMS
+  ruby
+
+DEPENDENCIES
+  bundler (~> 1.0.0)
+  jeweler (~> 1.5.1)
+  rcov
+  shoulda

data/LICENSE.txt

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+Copyright (c) 2010 Chris Beer
+
+Permission is hereby granted, free of charge, to any person obtaining
+a copy of this software and associated documentation files (the
+"Software"), to deal in the Software without restriction, including
+without limitation the rights to use, copy, modify, merge, publish,
+distribute, sublicense, and/or sell copies of the Software, and to
+permit persons to whom the Software is furnished to do so, subject to
+the following conditions:
+
+The above copyright notice and this permission notice shall be
+included in all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
+LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
+OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
+WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

data/README.rdoc

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+= checkm
+
+Ruby implementation of Checkm, a general-purpose text-based file manifest format.
+
+== Contributing to checkm
+ 
+* Check out the latest master to make sure the feature hasn't been implemented or the bug hasn't been fixed yet
+* Check out the issue tracker to make sure someone already hasn't requested it and/or contributed it
+* Fork the project
+* Start a feature/bugfix branch
+* Commit and push until you are happy with your contribution
+* Make sure to add tests for it. This is important so I don't break it in a future version unintentionally.
+* Please try not to mess with the Rakefile, version, or history. If you want to have your own version, or is otherwise necessary, that is fine, but please isolate to its own commit so I can cherry-pick around it.
+
+== Copyright
+
+Copyright (c) 2010 Chris Beer. See LICENSE.txt for
+further details.
+

data/Rakefile

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+require 'rubygems'
+require 'bundler'
+begin
+  Bundler.setup(:default, :development)
+rescue Bundler::BundlerError => e
+  $stderr.puts e.message
+  $stderr.puts "Run `bundle install` to install missing gems"
+  exit e.status_code
+end
+require 'rake'
+
+require 'jeweler'
+Jeweler::Tasks.new do |gem|
+  # gem is a Gem::Specification... see http://docs.rubygems.org/read/chapter/20 for more options
+  gem.name = "checkm"
+  gem.homepage = "http://github.com/cbeer/checkm"
+  gem.license = "MIT"
+  gem.summary = "Checkm is a general-purpose text-based file manifest format"
+  gem.email = "chris@cbeer.info"
+  gem.authors = ["Chris Beer"]
+  # Include your dependencies below. Runtime dependencies are required when using your gem,
+  # and development dependencies are only needed for development (ie running rake tasks, tests, etc)
+  #  gem.add_runtime_dependency 'jabber4r', '> 0.1'
+  #  gem.add_development_dependency 'rspec', '> 1.2.3'
+end
+Jeweler::RubygemsDotOrgTasks.new
+
+require 'rake/testtask'
+Rake::TestTask.new(:test) do |test|
+  test.libs << 'lib' << 'test'
+  test.pattern = 'test/**/test_*.rb'
+  test.verbose = true
+end
+
+require 'rcov/rcovtask'
+Rcov::RcovTask.new do |test|
+  test.libs << 'test'
+  test.pattern = 'test/**/test_*.rb'
+  test.verbose = true
+end
+
+task :default => :test
+
+require 'rake/rdoctask'
+Rake::RDocTask.new do |rdoc|
+  version = File.exist?('VERSION') ? File.read('VERSION') : ""
+
+  rdoc.rdoc_dir = 'rdoc'
+  rdoc.title = "checkm #{version}"
+  rdoc.rdoc_files.include('README*')
+  rdoc.rdoc_files.include('lib/**/*.rb')
+end

data/VERSION

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+0.0.0

data/lib/checkm.rb

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+module Checkm
+  class Manifest
+    def self.parse str, args = {}
+      Manifest.new str, args
+    end
+
+    attr_reader :version
+    attr_reader :entries
+    attr_reader :fields
+    attr_reader :path
+
+    def initialize checkm, args = {}
+      @version = nil
+      @checkm = checkm
+      @lines = checkm.split "\n"
+      @entries = []
+      @eof = false
+      @fields= nil
+      @path = args[:path]
+      @path ||= Dir.pwd
+      parse_lines 
+      # xxx error on empty entries?
+    end
+
+    private
+
+    def parse_lines
+      @lines.each do |line|
+        case line
+          when /^#%/
+            parse_header line
+	  when /^#/
+            parse_comment line
+	  when /^$/
+
+	  when /^@/
+	    parse_line line     
+	  else
+	    parse_line line     
+	end
+      end
+    end
+
+    def parse_header line
+      case line
+        when /^#%checkm/
+	  match = /^#%checkm_(\d+)\.(\d+)/.match line
+          @version = "#{match[1]}.#{match[2]}" if match
+	when /^#%eof/
+          @eof = true
+	when /^#%fields/
+          list = line.split('|')
+	  list.shift
+	  @fields = list.map { |v| v.strip.downcase }
+	when /^#%prefix/
+
+	when /^#%profile/
+
+      end
+    end
+    
+    def parse_comment line
+
+    end
+
+    def parse_line line
+      @entries << Entry.new(line, self)
+    end
+
+    def valid?
+      @entries.map { |e| e.valid? }.any? { |b| b == false }
+    end
+
+  end
+
+  class Entry
+    CHUNK_SIZE = 8*1024*1024
+    BASE_FIELDS = ['sourcefileorurl', 'alg', 'digest', 'length', 'modtime', 'targetfileorurl']
+    attr_reader :values
+
+    def initialize line, manifest = nil
+      @line = line.strip
+      @include = false
+      @fields = BASE_FIELDS
+      @fields = manifest.fields if manifest and manifest.fields
+      @values = line.split('|').map { |s| s.strip }
+      @manifest = manifest
+    end
+
+    def method_missing(sym, *args, &block)
+      @values[@fields.index(sym.to_s.downcase) || BASE_FIELDS.index(sym.to_s.downcase)] rescue nil
+    end
+
+
+    def valid?
+      return source_exists? && valid_checksum? && valid_multilevel? # xxx && valid_length? && valid_modtime?
+    end
+
+    private
+    def source
+      file = sourcefileorurl
+      file = file[1..-1] if file =~ /^@/
+      File.join(@manifest.path, file)
+    end
+
+    def source_exists?
+      return File.exists? source
+    end
+
+    def valid_checksum?
+      file = File.new source
+      digest_alg = case alg
+        when nil
+          return true
+        when /md5/
+           Digest::MD5.new if alg == 'md5'
+        when /sha1/
+        when /sha256/
+        when /dir/
+          return File.directory? file
+        else 
+          return false      
+      end
+
+      while not file.eof? and chunk = file.readpartial(CHUNK_SIZE)
+        digest_alg << chunk
+      end
+
+      return digest_alg.hexdigest == digest
+    end
+
+    def valid_length?
+      throw NotImplementedError
+    end
+
+    def valid_modtime?
+      throw NotImplementedError
+    end
+
+    def valid_multilevel?
+      return true unless sourcefileorurl =~ /^@/
+
+      return Manifest.parse(open(source).read, File.dirname(source))
+    end
+  end
+end

data/test/helper.rb

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+require 'rubygems'
+require 'bundler'
+begin
+  Bundler.setup(:default, :development)
+rescue Bundler::BundlerError => e
+  $stderr.puts e.message
+  $stderr.puts "Run `bundle install` to install missing gems"
+  exit e.status_code
+end
+require 'test/unit'
+require 'shoulda'
+
+$LOAD_PATH.unshift(File.join(File.dirname(__FILE__), '..', 'lib'))
+$LOAD_PATH.unshift(File.dirname(__FILE__))
+require 'checkm'
+
+class Test::Unit::TestCase
+end

data/test/test_1/1

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+1

data/test/test_checkm.rb

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+require 'helper'
+
+class TestCheckm < Test::Unit::TestCase
+  def test_empty
+    checkm = ''
+    res = Checkm::Manifest.parse(checkm)
+    assert_equal(res.entries.empty?, true)
+  end
+
+  def test_comment
+    checkm = '#'
+    res = Checkm::Manifest.parse(checkm)
+    assert_equal(res.entries.empty?, true)
+  end
+
+  def test_version
+    checkm = '#%checkm_0.7'
+    res = Checkm::Manifest.parse(checkm)
+    assert_equal(res.entries.empty?, true)
+    assert_equal(res.version, '0.7')
+  end
+
+  def test_parse_simple
+    checkm = 'book/Chapter9.xml |   md5   |  49afbd86a1ca9f34b677a3f09655eae9'
+    res = Checkm::Manifest.parse(checkm)
+    assert_equal(res.entries.length, 1)
+    assert_equal(res.entries.first.values[0], 'book/Chapter9.xml')
+    assert_equal(res.entries.first.values[1], 'md5')
+    assert_equal(res.entries.first.values[2], '49afbd86a1ca9f34b677a3f09655eae9')
+  end
+
+  def test_parse_named_fields
+    checkm = 'book/Chapter9.xml |   md5   |  49afbd86a1ca9f34b677a3f09655eae9'
+    res = Checkm::Manifest.parse(checkm)
+    assert_equal(res.entries.length, 1)
+    assert_equal(res.entries.first.sourcefileorurl, 'book/Chapter9.xml')
+    assert_equal(res.entries.first.alg, 'md5')
+    assert_equal(res.entries.first.digest, '49afbd86a1ca9f34b677a3f09655eae9')
+  end
+
+  def test_parse_custom_fields
+    checkm= '#%fields | testa | test b' + "\n" +
+            'book/Chapter9.xml |   md5   |  49afbd86a1ca9f34b677a3f09655eae9'
+
+	    
+    res = Checkm::Manifest.parse(checkm)
+    assert_equal(res.entries.length, 1)
+    assert_equal(res.entries.first.sourcefileorurl, 'book/Chapter9.xml')
+    assert_equal(res.entries.first.testa, 'book/Chapter9.xml')
+    assert_equal(res.entries.first.alg, 'md5')
+    assert_equal(res.entries.first.send(:'test b'), 'md5')
+    assert_equal(res.entries.first.digest, '49afbd86a1ca9f34b677a3f09655eae9')
+  end
+
+  def test_valid
+    checkm = '1 | md5 | b026324c6904b2a9cb4b88d6d61c81d1'
+    res = Checkm::Manifest.parse(checkm, :path => File.join(File.dirname(__FILE__), 'test_1'))
+    assert_equal(res.entries.length, 1)
+    assert_equal(res.entries.first.valid?, true)
+  end
+
+  def test_valid_dir
+    checkm = 'test_1 | dir'
+    res = Checkm::Manifest.parse(checkm, :path => File.join(File.dirname(__FILE__)))
+
+    assert_equal(res.entries.length, 1)
+    assert_equal(res.entries.first.valid?, true)
+  end
+
+  def test_invalid_missing_file
+    checkm = '2 | md5 | b026324c6904b2a9cb4b88d6d61c81d1'
+    res = Checkm::Manifest.parse(checkm, :path => File.join(File.dirname(__FILE__), 'test_1'))
+    assert_equal(res.entries.length, 1)
+    assert_equal(res.entries.first.valid?, false)
+  end
+
+  def test_invalid_bad_checksum
+    checkm = '1 | md5 | zzz'
+    res = Checkm::Manifest.parse(checkm, :path => File.join(File.dirname(__FILE__), 'test_1'))
+    assert_equal(res.entries.length, 1)
+    assert_equal(res.entries.first.valid?, false)
+  end
+end

metadata

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+--- !ruby/object:Gem::Specification 
+name: checkm
+version: !ruby/object:Gem::Version 
+  hash: 31
+  prerelease: false
+  segments: 
+  - 0
+  - 0
+  - 0
+  version: 0.0.0
+platform: ruby
+authors: 
+- Chris Beer
+autorequire: 
+bindir: bin
+cert_chain: []
+
+date: 2010-11-26 00:00:00 -05:00
+default_executable: 
+dependencies: 
+- !ruby/object:Gem::Dependency 
+  type: :development
+  prerelease: false
+  name: shoulda
+  version_requirements: &id001 !ruby/object:Gem::Requirement 
+    none: false
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        hash: 3
+        segments: 
+        - 0
+        version: "0"
+  requirement: *id001
+- !ruby/object:Gem::Dependency 
+  type: :development
+  prerelease: false
+  name: bundler
+  version_requirements: &id002 !ruby/object:Gem::Requirement 
+    none: false
+    requirements: 
+    - - ~>
+      - !ruby/object:Gem::Version 
+        hash: 23
+        segments: 
+        - 1
+        - 0
+        - 0
+        version: 1.0.0
+  requirement: *id002
+- !ruby/object:Gem::Dependency 
+  type: :development
+  prerelease: false
+  name: jeweler
+  version_requirements: &id003 !ruby/object:Gem::Requirement 
+    none: false
+    requirements: 
+    - - ~>
+      - !ruby/object:Gem::Version 
+        hash: 1
+        segments: 
+        - 1
+        - 5
+        - 1
+        version: 1.5.1
+  requirement: *id003
+- !ruby/object:Gem::Dependency 
+  type: :development
+  prerelease: false
+  name: rcov
+  version_requirements: &id004 !ruby/object:Gem::Requirement 
+    none: false
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        hash: 3
+        segments: 
+        - 0
+        version: "0"
+  requirement: *id004
+description: 
+email: chris@cbeer.info
+executables: []
+
+extensions: []
+
+extra_rdoc_files: 
+- LICENSE.txt
+- README.rdoc
+files: 
+- .document
+- Gemfile
+- Gemfile.lock
+- LICENSE.txt
+- README.rdoc
+- Rakefile
+- VERSION
+- lib/checkm.rb
+- test/helper.rb
+- test/test_1/1
+- test/test_checkm.rb
+has_rdoc: true
+homepage: http://github.com/cbeer/checkm
+licenses: 
+- MIT
+post_install_message: 
+rdoc_options: []
+
+require_paths: 
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement 
+  none: false
+  requirements: 
+  - - ">="
+    - !ruby/object:Gem::Version 
+      hash: 3
+      segments: 
+      - 0
+      version: "0"
+required_rubygems_version: !ruby/object:Gem::Requirement 
+  none: false
+  requirements: 
+  - - ">="
+    - !ruby/object:Gem::Version 
+      hash: 3
+      segments: 
+      - 0
+      version: "0"
+requirements: []
+
+rubyforge_project: 
+rubygems_version: 1.3.7
+signing_key: 
+specification_version: 3
+summary: Checkm is a general-purpose text-based file manifest format
+test_files: 
+- test/helper.rb
+- test/test_checkm.rb