cdd 0.0.2 → 0.0.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/.gitignore +1 -0
- data/.travis.yml +2 -0
- data/README.md +14 -1
- data/lib/cdd/data_set.rb +6 -0
- data/lib/cdd/vault.rb +10 -0
- data/lib/cdd/version.rb +1 -1
- data/lib/cdd.rb +1 -0
- data/spec/cdd_spec.rb +98 -71
- metadata +6 -4
data/.gitignore
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data/.travis.yml
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data/README.md
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@@ -1,7 +1,9 @@
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# CDD - Collaborative Drug Discovery
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# CDD - Collaborative Drug Discovery [](https://travis-ci.org/cpetersen/cdd) [](https://codeclimate.com/github/cpetersen/cdd)
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Collaborative Drug Discovery is a web based tool for storing and sharing pharmaceutical research. This is a ruby wrapper for their API.
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CDD's API can be found [here](https://support.collaborativedrug.com/categories/20081556-cdd-api-documentation).
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## Installation
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Add this line to your application's Gemfile:
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@@ -48,6 +50,17 @@ Returns a list of project objects that look like:
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[{"name"=>"Your Project Name", "id"=>1234}]
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```
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## DataSets
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Given a vault object, you can retrieve it's available data sets:
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```ruby
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data_sets = vaults.first.data_sets
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```
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Returns a list of data_set objects that look like:
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```ruby
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[{"name"=>"Data Set X, "id"=>1234567}]
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```
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## Searches
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Given a vault object, you can retrieve it's searches list:
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```ruby
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data/lib/cdd/data_set.rb
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data/lib/cdd/vault.rb
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@@ -2,6 +2,16 @@ module CDD
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class Vault < Base
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attr_accessor :name
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def data_sets
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@data_sets ||= client.execute(data_sets_url).collect do |hash|
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CDD::DataSet.new(self.client, {:vault => self}.merge(hash))
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end
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end
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def data_sets_url
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"/api/v1/vaults/#{self.id}/data_sets"
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end
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def projects
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@project ||= client.execute(projects_url).collect do |hash|
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CDD::Project.new(self.client, {:vault => self}.merge(hash))
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data/lib/cdd/version.rb
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data/lib/cdd.rb
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data/spec/cdd_spec.rb
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@@ -1,109 +1,136 @@
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require 'spec_helper'
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describe CDD do
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context "A default client" do
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let(:token) { ENV["CDD_TOKEN_ID"] || "1234567890" }
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let(:client) { CDD::Client.new(token) }
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it "should have the correct vaults_url" do
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client.vaults_url.should == "/api/v1/vaults"
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end
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it "should call the default vaults url" do
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RestClient.should_receive(:get).with("https://app.collaborativedrug.com/api/v1/vaults", { :params=>{} , "X-CDD-Token" => token}).and_return(fake_response([{:id => "1234", :name => "Test Vault"}].to_json))
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client.vaults
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end
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context "when requesting vaults" do
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before(:all) do
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RestClient.stub(:get).with("https://app.collaborativedrug.com/api/v1/vaults", { :params=>{} , "X-CDD-Token" => token}).and_return(fake_response([{:id => "1234", :name => "Test Vault"}].to_json))
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end
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let(:vaults) { client.vaults }
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it "should
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it "should return an array of vaults" do
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vaults.class.should == Array
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vaults.first.class.should == CDD::Vault
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end
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context "
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context "the vault" do
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let(:vault) { vaults.first }
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it "should have the correct values" do
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vault.id.should == "1234"
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vault.name.should == "Test Vault"
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end
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let(:vaults) { client.vaults }
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it "should
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vaults.first.class.should == CDD::Vault
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it "should have the correct default export_url" do
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vault.export_url.should == "/api/v1/vaults/#{vault.id}/exports.csv"
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end
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it "should have the correct csv export_url" do
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vault.export_url("csv").should == "/api/v1/vaults/#{vault.id}/exports.csv"
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end
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end
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it "should have the correct sdf export_url" do
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vault.export_url("sdf").should == "/api/v1/vaults/#{vault.id}/exports.sdf"
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end
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it "should have the correct searches_url" do
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vault.searches_url.should == "/api/v1/vaults/#{vault.id}/searches"
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end
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it "should call the default searches url" do
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RestClient.should_receive(:get).with("https://app.collaborativedrug.com/api/v1/vaults/#{vault.id}/searches", { :params=>{} , "X-CDD-Token" => token}).and_return(fake_response([{:id => "12345", :name => "Test Search"}].to_json))
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vault.searches
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end
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context "when requesting searches" do
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before(:all) do
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RestClient.stub(:get).with("https://app.collaborativedrug.com/api/v1/vaults/#{vault.id}/searches", { :params=>{} , "X-CDD-Token" => token}).and_return(fake_response([{:id => "12345", :name => "Test Search"}].to_json))
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end
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let(:searches) { vault.searches }
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it "should
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it "should return an array of searches" do
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searches.class.should == Array
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searches.first.class.should == CDD::Search
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end
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vault.searches
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end
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context "the search" do
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let(:search) { searches.first }
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it "should have the correct values" do
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search.id.should == "12345"
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search.name.should == "Test Search"
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end
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end
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end
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end
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it "should have the correct data_sets_url" do
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vaults.first.data_sets_url.should == "/api/v1/vaults/#{vaults.first.id}/data_sets"
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end
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it "should call the default data_sets url" do
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RestClient.should_receive(:get).with("https://app.collaborativedrug.com/api/v1/vaults/#{vaults.first.id}/data_sets", { :params=>{} , "X-CDD-Token" => token}).and_return(fake_response([{:id => "12345678", :name => "Test Data Set"}].to_json))
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vault.data_sets
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end
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end
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end
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context "when requesting data_sets" do
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before(:all) do
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RestClient.stub(:get).with("https://app.collaborativedrug.com/api/v1/vaults/#{vaults.first.id}/data_sets", { :params=>{} , "X-CDD-Token" => token}).and_return(fake_response([{:id => "12345678", :name => "Test Data Set"}].to_json))
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end
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let(:data_sets) { vault.data_sets }
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it "should
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it "should return an array of data_sets" do
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data_sets.class.should == Array
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data_sets.first.class.should == CDD::DataSet
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end
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vault.projects
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end
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context "the data_set" do
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let(:data_set) { data_sets.first }
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it "should have the correct values" do
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data_set.id.should == "12345678"
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data_set.name.should == "Test Data Set"
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end
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end
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end
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it "should have the correct projects_url" do
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vaults.first.projects_url.should == "/api/v1/vaults/#{vaults.first.id}/projects"
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end
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it "should call the default projects url" do
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RestClient.should_receive(:get).with("https://app.collaborativedrug.com/api/v1/vaults/#{vaults.first.id}/projects", { :params=>{} , "X-CDD-Token" => token}).and_return(fake_response([{:id => "123456", :name => "Test Project"}].to_json))
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vault.projects
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end
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context "when requesting projects" do
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before(:all) do
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RestClient.stub(:get).with("https://app.collaborativedrug.com/api/v1/vaults/#{vaults.first.id}/projects", { :params=>{} , "X-CDD-Token" => token}).and_return(fake_response([{:id => "123456", :name => "Test Project"}].to_json))
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end
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let(:projects) { vault.projects }
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it "should return an array of projects" do
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projects.class.should == Array
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projects.first.class.should == CDD::Project
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end
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context "the project" do
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let(:project) { projects.first }
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end
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it "should have the correct values" do
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project.id.should == "123456"
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project.name.should == "Test Project"
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end
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end
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end
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metadata
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--- !ruby/object:Gem::Specification
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name: cdd
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version: !ruby/object:Gem::Version
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version: 0.0.
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version: 0.0.3
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prerelease:
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platform: ruby
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authors:
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2013-01-
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date: 2013-01-25 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: json
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extra_rdoc_files: []
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files:
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- .gitignore
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- .travis.yml
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- Gemfile
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- LICENSE
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- README.md
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- lib/cdd.rb
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- lib/cdd/base.rb
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- lib/cdd/client.rb
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- lib/cdd/data_set.rb
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- lib/cdd/export.rb
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- lib/cdd/project.rb
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- lib/cdd/search.rb
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version: '0'
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segments:
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- 0
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hash:
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hash: 3574982497320562979
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required_rubygems_version: !ruby/object:Gem::Requirement
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none: false
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requirements:
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version: '0'
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segments:
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- 0
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hash:
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hash: 3574982497320562979
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requirements: []
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rubyforge_project:
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rubygems_version: 1.8.24
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