caymans 0.0.1

data/.gitignore

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+*.gem
+*.rbc
+.bundle
+.config
+.yardoc
+Gemfile.lock
+InstalledFiles
+_yardoc
+coverage
+doc/
+lib/bundler/man
+pkg
+rdoc
+spec/reports
+test/tmp
+test/version_tmp
+tmp

data/Gemfile

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+source 'https://rubygems.org'
+
+# Specify your gem's dependencies in kmeans.gemspec
+gemspec

data/LICENSE

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+Copyright (c) 2013 Alejandro Ciniglio
+
+MIT License
+
+Permission is hereby granted, free of charge, to any person obtaining
+a copy of this software and associated documentation files (the
+"Software"), to deal in the Software without restriction, including
+without limitation the rights to use, copy, modify, merge, publish,
+distribute, sublicense, and/or sell copies of the Software, and to
+permit persons to whom the Software is furnished to do so, subject to
+the following conditions:
+
+The above copyright notice and this permission notice shall be
+included in all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
+LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
+OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
+WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

data/README.md

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+# Kmeans
+
+TODO: Write a gem description
+
+## Installation
+
+Add this line to your application's Gemfile:
+
+    gem 'kmeans'
+
+And then execute:
+
+    $ bundle
+
+Or install it yourself as:
+
+    $ gem install kmeans
+
+## Usage
+
+TODO: Write usage instructions here
+
+## Contributing
+
+1. Fork it
+2. Create your feature branch (`git checkout -b my-new-feature`)
+3. Commit your changes (`git commit -am 'Added some feature'`)
+4. Push to the branch (`git push origin my-new-feature`)
+5. Create new Pull Request

data/Rakefile

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+#!/usr/bin/env rake
+require "bundler/gem_tasks"

data/kmeans.gemspec

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+# -*- encoding: utf-8 -*-
+require File.expand_path('../lib/kmeans/version', __FILE__)
+
+Gem::Specification.new do |gem|
+  gem.authors       = ["Alejandro Ciniglio"]
+  gem.email         = ["mail@alejandrociniglio.com"]
+  gem.description   = %q{A Kmeans classifier written in ruby, good for fast classification}
+  gem.summary       = %q{A Kmeans classifier written in ruby}
+  gem.homepage      = "http://github.com/ciniglio/kmeans"
+
+  gem.files         = `git ls-files`.split($\)
+  gem.executables   = gem.files.grep(%r{^bin/}).map{ |f| File.basename(f) }
+  gem.test_files    = gem.files.grep(%r{^(test|spec|features)/})
+  gem.name          = "caymans"
+  gem.require_paths = ["lib"]
+  gem.version       = Kmeans::VERSION
+end

data/lib/kmeans.rb

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+require "kmeans/version"
+require "kmeans/initial"
+require "kmeans/util"
+require "kmeans/steps"
+require "kmeans/default_classifier"
+module Kmeans
+  # Your code goes here...
+end

data/lib/kmeans/default_classifier.rb

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+module Kmeans
+  class DefaultClassifier < Classifier
+    include RandomInitializer
+  end
+
+  class ForgyClassifier < Classifier
+    include ForgyInitializer
+  end
+end

data/lib/kmeans/errors.rb

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+module Kmeans
+  class LengthMismatch < ArgumentError
+  end
+end

data/lib/kmeans/initial.rb

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+module Kmeans
+  class Classifier
+    def initialize(k, data)
+      @k = k
+      @data = data
+      @clusters = new_clusters(@k)
+    end
+  end
+
+  module ForgyInitializer
+    def initialize(*args)
+      super *args
+      @means = random_selection(@k)
+      assignment_step
+    end
+  end
+
+  module RandomInitializer
+    def initialize(*args)
+      super *args
+      r = Random.new
+      @data.each do |v|
+        @clusters[r.rand(@k)] << v
+      end
+      update_step
+    end
+  end
+end

data/lib/kmeans/steps.rb

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+module Kmeans
+  class Classifier
+    def assignment_step
+      clusters = new_clusters(@k)
+      @data.each do |d|
+        min_dist = Float::INFINITY
+        nearest = nil
+        @means.each_with_index do |m, i|
+          dist = distance(d, m)
+          if dist < min_dist
+            min_dist = dist
+            nearest = i
+          end
+        end
+        clusters[nearest] << d
+      end
+      @clusters = clusters
+    end
+
+    def update_step
+      means = Array.new(@k)
+      @clusters.each_with_index do |c, i|
+        means[i] = centroid(c)
+      end
+      @means = means
+      assignment_step
+    end
+
+    def run(n = 100)
+      n.times { update_step }
+    end
+  end
+end

data/lib/kmeans/util.rb

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+require 'set'
+
+module Kmeans
+  class Classifier
+    def random_selection(n = 1)
+      @data.to_a.sample n
+    end
+
+    def distance(u, v)
+      raise LengthMismatch, "||#{u}|| != ||#{v}||" unless (u.length == v.length)
+      sum = 0.to_f
+      u.each_with_index do |p, i|
+        q = v[i]
+        sum += (p - q)**(2.to_f)
+      end
+      Math.sqrt(sum)
+    end
+
+    def new_clusters(n)
+      clusters = []
+      n.times { clusters << Set.new }
+      clusters
+    end
+
+    def centroid(points)
+      x = Array.new(points.first.length, 0)
+      points.each do |p|
+        x = x.zip(p).map { |xi| xi.inject(:+) }
+      end
+      x.map { |xi| xi / points.length.to_f }
+    end
+  end
+end

data/lib/kmeans/version.rb

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+module Kmeans
+  VERSION = "0.0.1"
+end

metadata

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+--- !ruby/object:Gem::Specification
+name: caymans
+version: !ruby/object:Gem::Version
+  version: 0.0.1
+  prerelease: 
+platform: ruby
+authors:
+- Alejandro Ciniglio
+autorequire: 
+bindir: bin
+cert_chain: []
+date: 2013-01-13 00:00:00.000000000 Z
+dependencies: []
+description: A Kmeans classifier written in ruby, good for fast classification
+email:
+- mail@alejandrociniglio.com
+executables: []
+extensions: []
+extra_rdoc_files: []
+files:
+- .gitignore
+- Gemfile
+- LICENSE
+- README.md
+- Rakefile
+- kmeans.gemspec
+- lib/kmeans.rb
+- lib/kmeans/default_classifier.rb
+- lib/kmeans/errors.rb
+- lib/kmeans/initial.rb
+- lib/kmeans/steps.rb
+- lib/kmeans/util.rb
+- lib/kmeans/version.rb
+homepage: http://github.com/ciniglio/kmeans
+licenses: []
+post_install_message: 
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  none: false
+  requirements:
+  - - ! '>='
+    - !ruby/object:Gem::Version
+      version: '0'
+required_rubygems_version: !ruby/object:Gem::Requirement
+  none: false
+  requirements:
+  - - ! '>='
+    - !ruby/object:Gem::Version
+      version: '0'
+requirements: []
+rubyforge_project: 
+rubygems_version: 1.8.24
+signing_key: 
+specification_version: 3
+summary: A Kmeans classifier written in ruby
+test_files: []