caruby-scat 1.2.1

data/test/fixtures/seed.rb

@@ -0,0 +1,25 @@
+require Bundler.environment.specs.detect { |s| s.name == 'caruby-tissue' }.full_gem_path + '/examples/galena/lib/galena/seed'
+
+module Scat
+  # The Scat test protocol fixture.
+  module Seed
+    # @param [String] title the protocol title
+    # @return [CaTissue::CollectionProtocol] a new test protocol with one event and one frozen tissue requirement
+    def self.protocol_for(title)
+      # Borrow the Galena seed.
+      galena = Galena.administrative_objects
+      # the CP
+      pcl = CaTissue::CollectionProtocol.new(
+        :title => title, 
+        :principal_investigator => galena.protocol.principal_investigator,
+        :sites => [galena.tissue_bank],
+        :coordinators => [galena.tissue_bank.coordinator]
+      )
+      # the sole event
+      cpe = CaTissue::CollectionProtocolEvent.new(:collection_protocol => pcl, :event_point => 1.0)
+      # the sole specimen requirement
+      CaTissue::TissueSpecimenRequirement.new(:collection_event => cpe, :specimen_type => 'Frozen Tissue')
+      pcl
+    end
+  end
+end

data/views/edit.haml

@@ -0,0 +1,12 @@
+%form{ :method => 'post', :action => '/' }
+  - Scat::Edit.instance.fields.each do |field|
+    %div{ :id => field.name }
+      - if field.help then
+        %a{ :href => '#', :class => 'help' }
+          %img{ :src => '/images/help.png' }
+          %span= "<strong>#{field.label}:</strong> #{field.help}" 
+      %label{ :for => field.input_id }= field.label
+      %input{ field.input_attributes(session[field.name.to_sym]) }
+  %input{ :type => :submit, :value => 'Save', :onclick => "document.getElementById('status_text').innerHTML='Saving the specimen...';" }
+#status
+  %p{ :id => 'status_text' }= session[:status]

data/views/layout.haml

@@ -0,0 +1,40 @@
+/[if lt IE 7]
+  %html{ :class => 'ie ie6', :lang => 'en' }
+/[if IE 7]
+  %html{ :class => 'ie ie7', :lang => 'en' }
+/[if IE 8]
+  %html{ :class => 'ie ie8', :lang => 'en' }
+/[if gte IE 9|!(IE)]
+  %html{ :lang => 'en' }
+
+%head
+  %meta{ :charset => 'utf-8' }
+  %meta{ :name => 'author', :content => 'OHSU' }
+  %meta{ :name => 'viewport', :content => 'width=device-width, initial-scale=1, maximum-scale=1' }
+  %title Scat
+  
+  %link{ :rel => 'stylesheet', :type => 'text/css', :href => '/stylesheets/base.css' }
+  %link{ :rel => 'stylesheet', :type => 'text/css', :href => '/stylesheets/skeleton.css' }
+  %link{ :rel => 'stylesheet', :type => 'text/css', :href => '/stylesheets/layout.css' }
+  %link{ :rel => 'stylesheet', :type => 'text/css', :href => 'http://ajax.googleapis.com/ajax/libs/jqueryui/1.8/themes/base/jquery-ui.css' }
+  %link{ :rel => 'stylesheet', :type => 'text/css', :href => '/stylesheets/scat.css' }
+  
+  / Favicons
+  %link{ :rel => 'shortcut icon', :href => '/images/favicon.ico' }
+  %link{ :rel => 'apple-touch-icon', :href => '/images/apple-touch-icon.png' }
+  %link{ :rel => 'apple-touch-icon', :sizes => '72x72', :href => '/images/apple-touch-icon-72x72.png' }
+  %link{ :rel => 'apple-touch-icon', :sizes => '114x114', :href => '/images/apple-touch-icon-114x114.png' }
+  
+  /[if lt IE 9]
+    %script{ :src => 'http://html5shim.googlecode.com/svn/trunk/html5.js' } 
+  %script{ :src => 'http://ajax.googleapis.com/ajax/libs/jquery/1.5/jquery.min.js' }
+  %script{ :src => 'http://ajax.googleapis.com/ajax/libs/jqueryui/1.8/jquery-ui.min.js' }
+  :javascript
+    $(document).ready(function() {
+      $("#diagnosis input").autocomplete({ minLength: 5, delay: 500, source: '/autocomplete/clinical_diagnosis' });
+      $("#tissue_site input").autocomplete({ minLength: 5, delay: 500, source: '/autocomplete/tissue_site' });
+    });
+%body
+  .container
+    %h1{ :class => 'application' }= 'Scat'
+    #content= yield

metadata

@@ -0,0 +1,216 @@
+--- !ruby/object:Gem::Specification 
+name: caruby-scat
+version: !ruby/object:Gem::Version 
+  prerelease: 
+  version: 1.2.1
+platform: ruby
+authors: 
+  - OHSU
+autorequire: 
+bindir: bin
+cert_chain: []
+
+date: 2012-07-17 00:00:00 Z
+dependencies: 
+  - !ruby/object:Gem::Dependency 
+    name: bundler
+    prerelease: false
+    requirement: &id001 !ruby/object:Gem::Requirement 
+      none: false
+      requirements: 
+        - - ">="
+          - !ruby/object:Gem::Version 
+            version: "0"
+    type: :runtime
+    version_requirements: *id001
+  - !ruby/object:Gem::Dependency 
+    name: rack
+    prerelease: false
+    requirement: &id002 !ruby/object:Gem::Requirement 
+      none: false
+      requirements: 
+        - - ">="
+          - !ruby/object:Gem::Version 
+            version: "0"
+    type: :runtime
+    version_requirements: *id002
+  - !ruby/object:Gem::Dependency 
+    name: sinatra
+    prerelease: false
+    requirement: &id003 !ruby/object:Gem::Requirement 
+      none: false
+      requirements: 
+        - - ">="
+          - !ruby/object:Gem::Version 
+            version: "0"
+    type: :runtime
+    version_requirements: *id003
+  - !ruby/object:Gem::Dependency 
+    name: haml
+    prerelease: false
+    requirement: &id004 !ruby/object:Gem::Requirement 
+      none: false
+      requirements: 
+        - - ">="
+          - !ruby/object:Gem::Version 
+            version: "0"
+    type: :runtime
+    version_requirements: *id004
+  - !ruby/object:Gem::Dependency 
+    name: redis
+    prerelease: false
+    requirement: &id005 !ruby/object:Gem::Requirement 
+      none: false
+      requirements: 
+        - - ">="
+          - !ruby/object:Gem::Version 
+            version: "0"
+    type: :runtime
+    version_requirements: *id005
+  - !ruby/object:Gem::Dependency 
+    name: redis-store
+    prerelease: false
+    requirement: &id006 !ruby/object:Gem::Requirement 
+      none: false
+      requirements: 
+        - - ">="
+          - !ruby/object:Gem::Version 
+            version: "0"
+    type: :runtime
+    version_requirements: *id006
+  - !ruby/object:Gem::Dependency 
+    name: jruby-openssl
+    prerelease: false
+    requirement: &id007 !ruby/object:Gem::Requirement 
+      none: false
+      requirements: 
+        - - ">="
+          - !ruby/object:Gem::Version 
+            version: "0"
+    type: :runtime
+    version_requirements: *id007
+  - !ruby/object:Gem::Dependency 
+    name: caruby-small
+    prerelease: false
+    requirement: &id008 !ruby/object:Gem::Requirement 
+      none: false
+      requirements: 
+        - - ">="
+          - !ruby/object:Gem::Version 
+            version: "0"
+    type: :runtime
+    version_requirements: *id008
+  - !ruby/object:Gem::Dependency 
+    name: yard
+    prerelease: false
+    requirement: &id009 !ruby/object:Gem::Requirement 
+      none: false
+      requirements: 
+        - - ">="
+          - !ruby/object:Gem::Version 
+            version: "0"
+    type: :development
+    version_requirements: *id009
+  - !ruby/object:Gem::Dependency 
+    name: rake
+    prerelease: false
+    requirement: &id010 !ruby/object:Gem::Requirement 
+      none: false
+      requirements: 
+        - - ">="
+          - !ruby/object:Gem::Version 
+            version: "0"
+    type: :development
+    version_requirements: *id010
+description: Simple caTissue web application. See the home page for more information.
+email: caruby.org@gmail.com
+executables: 
+  - scat
+  - scatseed
+extensions: []
+
+extra_rdoc_files: []
+
+files: 
+  - .gitignore
+  - Gemfile
+  - Gemfile.lock
+  - History.md
+  - LEGAL
+  - LICENSE
+  - README.md
+  - Rakefile
+  - bin/scat
+  - bin/scatseed
+  - caruby-scat.gemspec
+  - conf/fields.yaml
+  - conf/redis.conf
+  - config.ru
+  - ext/README.txt
+  - features/edit.feature
+  - features/step_definitions/scat_steps.rb
+  - features/support/env.rb
+  - features/support/seed.rb
+  - lib/scat.rb
+  - lib/scat/autocomplete.rb
+  - lib/scat/cache.rb
+  - lib/scat/configuration.rb
+  - lib/scat/edit.rb
+  - lib/scat/field.rb
+  - lib/scat/version.rb
+  - public/images/apple-touch-icon-114x114.png
+  - public/images/apple-touch-icon-72x72.png
+  - public/images/apple-touch-icon.png
+  - public/images/favicon.ico
+  - public/images/help.png
+  - public/javascripts/tabs.js
+  - public/robots.txt
+  - public/stylesheets/base.css
+  - public/stylesheets/layout.css
+  - public/stylesheets/scat.css
+  - public/stylesheets/skeleton.css
+  - redis.rdb
+  - spec/autocomplete_spec.rb
+  - spec/edit_spec.rb
+  - spec/spec_helper.rb
+  - test/fixtures/seed.rb
+  - views/edit.haml
+  - views/layout.haml
+  - ext/redis-server
+homepage: https://github.com/caruby/scat
+licenses: 
+  - MIT
+post_install_message: 
+rdoc_options: []
+
+require_paths: 
+  - lib
+required_ruby_version: !ruby/object:Gem::Requirement 
+  none: false
+  requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        version: "0"
+required_rubygems_version: !ruby/object:Gem::Requirement 
+  none: false
+  requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        version: "0"
+requirements: []
+
+rubyforge_project: 
+rubygems_version: 1.8.15
+signing_key: 
+specification_version: 3
+summary: Simple caTissue web application
+test_files: 
+  - features/edit.feature
+  - features/step_definitions/scat_steps.rb
+  - features/support/env.rb
+  - features/support/seed.rb
+  - spec/autocomplete_spec.rb
+  - spec/edit_spec.rb
+  - spec/spec_helper.rb
+  - test/fixtures/seed.rb
+has_rdoc: yard