caruby-core 1.4.4 → 1.4.5

data/test/lib/caruby/util/weak_hash_test.rb

@@ -0,0 +1,45 @@
+$:.unshift 'lib'
+$:.unshift 'examples/clinical_trials/lib'
+
+require 'caruby/util/log'
+CaRuby::Log.instance.open('test/results/log/clinical_trials.log', :shift_age => 10, :shift_size => 1048576, :debug => true)
+
+require 'caruby/util/weak_hash'
+require 'clinical_trials'
+require File.join(File.dirname(__FILE__), '..', 'test_case')
+
+class WeakHashTest < Test::Unit::TestCase
+   def setup
+    @hash = CaRuby::WeakHash.new
+  end
+
+  def test_accessors
+    study = ClinicalTrials::Study.new(:identifier => 1)
+    @hash[1] = study
+    assert_equal(study, @hash[1], "Value not found for key")
+  end
+
+  def test_each
+    study = ClinicalTrials::Study.new(:identifier => 1)
+    @hash[1] = study
+    assert_equal([[1, study]], @hash.to_a, "Weak hash enumeration incorrect")
+  end
+
+  # Verify that a strongly referenced hash entry is not reclaimed and weakly referenced entries are
+  # eventually reclaimend.
+  def test_stress
+    # a strongly referenced entry
+    pinned = @hash[1] = ClinicalTrials::Study.new(:identifier => 1)
+    # make weakly referenced entries until one is reclaimed
+    2.upto(1000000) do |n|
+      @hash[n] = ClinicalTrials::Study.new(:identifier => n)
+      # the strongly referenced entry should always be retained.
+      # note that the test fails if the reference is @hash[1]. jRuby or Java probably
+      # optimize @hash[1] into a strong reference, but not @hash[pinned.identifier].
+      assert_not_nil(@hash[pinned.identifier], "Strongly referenced hash entry reclaimed")
+      # done when the second entry is reclaimed
+      return unless @hash[2]
+    end
+    fail("Weak hash entries not garbage-collected after 1,000,000 entries")
+  end
+end

metadata

@@ -1,178 +1,196 @@
 --- !ruby/object:Gem::Specification 
-extensions: []
+name: caruby-core
+version: !ruby/object:Gem::Version 
+  prerelease: 
+  version: 1.4.5
+platform: ruby
+authors: 
+  - OHSU
+autorequire: 
+bindir: bin
+cert_chain: []
 
-homepage: http://rubyforge.org/projects/caruby
+date: 2011-02-26 00:00:00 -08:00
+default_executable: 
+dependencies: 
+  - !ruby/object:Gem::Dependency 
+    name: dbi
+    prerelease: false
+    requirement: &id001 !ruby/object:Gem::Requirement 
+      none: false
+      requirements: 
+        - - ">="
+          - !ruby/object:Gem::Version 
+            version: "0"
+    type: :runtime
+    version_requirements: *id001
+  - !ruby/object:Gem::Dependency 
+    name: fastercsv
+    prerelease: false
+    requirement: &id002 !ruby/object:Gem::Requirement 
+      none: false
+      requirements: 
+        - - ">="
+          - !ruby/object:Gem::Version 
+            version: "0"
+    type: :runtime
+    version_requirements: *id002
+  - !ruby/object:Gem::Dependency 
+    name: uom
+    prerelease: false
+    requirement: &id003 !ruby/object:Gem::Requirement 
+      none: false
+      requirements: 
+        - - ">="
+          - !ruby/object:Gem::Version 
+            version: "0"
+    type: :runtime
+    version_requirements: *id003
+description: "    caRuby is a JRuby facade for interaction with caBIG applications.\n"
+email: caruby.org@gmail.com
 executables: []
 
-version: !ruby/object:Gem::Version 
-  prerelease: false
-  version: 1.4.4
-  segments: 
-  - 1
-  - 4
-  - 4
-post_install_message: 
-date: 2010-11-30 08:00:00 +00:00
-files: 
-- lib/caruby.rb
-- lib/caruby/database.rb
-- lib/caruby/resource.rb
-- lib/caruby/version.rb
-- lib/caruby/active_support/inflections.rb
-- lib/caruby/active_support/inflector.rb
-- lib/caruby/active_support/README.txt
-- lib/caruby/active_support/core_ext/string.rb
-- lib/caruby/active_support/core_ext/string/inflections.rb
-- lib/caruby/cli/application.rb
-- lib/caruby/cli/command.rb
-- lib/caruby/csv/csv_mapper.rb
-- lib/caruby/csv/csvio.rb
-- lib/caruby/database/fetched_matcher.rb
-- lib/caruby/database/lazy_loader.rb
-- lib/caruby/database/persistable.rb
-- lib/caruby/database/persistence_service.rb
-- lib/caruby/database/persistifier.rb
-- lib/caruby/database/reader.rb
-- lib/caruby/database/saved_matcher.rb
-- lib/caruby/database/search_template_builder.rb
-- lib/caruby/database/sql_executor.rb
-- lib/caruby/database/store_template_builder.rb
-- lib/caruby/database/writer.rb
-- lib/caruby/domain/attribute_initializer.rb
-- lib/caruby/domain/attribute_metadata.rb
-- lib/caruby/domain/id_alias.rb
-- lib/caruby/domain/inversible.rb
-- lib/caruby/domain/java_attribute_metadata.rb
-- lib/caruby/domain/merge.rb
-- lib/caruby/domain/properties.rb
-- lib/caruby/domain/reference_visitor.rb
-- lib/caruby/domain/resource_attributes.rb
-- lib/caruby/domain/resource_dependency.rb
-- lib/caruby/domain/resource_introspection.rb
-- lib/caruby/domain/resource_inverse.rb
-- lib/caruby/domain/resource_metadata.rb
-- lib/caruby/domain/resource_module.rb
-- lib/caruby/domain/uniquify.rb
-- lib/caruby/import/java.rb
-- lib/caruby/migration/migratable.rb
-- lib/caruby/migration/migrator.rb
-- lib/caruby/migration/resource_module.rb
-- lib/caruby/migration/uniquify.rb
-- lib/caruby/util/attribute_path.rb
-- lib/caruby/util/cache.rb
-- lib/caruby/util/class.rb
-- lib/caruby/util/collection.rb
-- lib/caruby/util/controlled_value.rb
-- lib/caruby/util/coordinate.rb
-- lib/caruby/util/domain_extent.rb
-- lib/caruby/util/file_separator.rb
-- lib/caruby/util/inflector.rb
-- lib/caruby/util/log.rb
-- lib/caruby/util/math.rb
-- lib/caruby/util/merge.rb
-- lib/caruby/util/module.rb
-- lib/caruby/util/options.rb
-- lib/caruby/util/partial_order.rb
-- lib/caruby/util/person.rb
-- lib/caruby/util/pretty_print.rb
-- lib/caruby/util/properties.rb
-- lib/caruby/util/stopwatch.rb
-- lib/caruby/util/topological_sync_enumerator.rb
-- lib/caruby/util/transitive_closure.rb
-- lib/caruby/util/tree.rb
-- lib/caruby/util/trie.rb
-- lib/caruby/util/uniquifier.rb
-- lib/caruby/util/validation.rb
-- lib/caruby/util/version.rb
-- lib/caruby/util/visitor.rb
-- lib/caruby/util/weak_hash.rb
-- lib/caruby/yard/resource_metadata_handler.rb
-- History.txt
-- LEGAL
-- LICENSE
-- README.md
-rubygems_version: 1.3.7
-rdoc_options: []
+extensions: []
 
-signing_key: 
-cert_chain: []
+extra_rdoc_files: []
 
-name: caruby-core
-has_rdoc: yard
-platform: ruby
-summary: Ruby facade for caBIG applications.
-default_executable: 
-bindir: bin
+files: 
+  - lib/caruby.rb
+  - lib/caruby/database.rb
+  - lib/caruby/resource.rb
+  - lib/caruby/version.rb
+  - lib/caruby/active_support/inflections.rb
+  - lib/caruby/active_support/inflector.rb
+  - lib/caruby/active_support/README.txt
+  - lib/caruby/active_support/core_ext/string.rb
+  - lib/caruby/active_support/core_ext/string/inflections.rb
+  - lib/caruby/cli/application.rb
+  - lib/caruby/cli/command.rb
+  - lib/caruby/csv/csv_mapper.rb
+  - lib/caruby/csv/csvio.rb
+  - lib/caruby/database/fetched_matcher.rb
+  - lib/caruby/database/lazy_loader.rb
+  - lib/caruby/database/persistable.rb
+  - lib/caruby/database/persistence_service.rb
+  - lib/caruby/database/persistifier.rb
+  - lib/caruby/database/reader.rb
+  - lib/caruby/database/saved_matcher.rb
+  - lib/caruby/database/search_template_builder.rb
+  - lib/caruby/database/sql_executor.rb
+  - lib/caruby/database/store_template_builder.rb
+  - lib/caruby/database/writer.rb
+  - lib/caruby/domain/attribute_initializer.rb
+  - lib/caruby/domain/attribute_metadata.rb
+  - lib/caruby/domain/id_alias.rb
+  - lib/caruby/domain/inversible.rb
+  - lib/caruby/domain/java_attribute_metadata.rb
+  - lib/caruby/domain/merge.rb
+  - lib/caruby/domain/properties.rb
+  - lib/caruby/domain/reference_visitor.rb
+  - lib/caruby/domain/resource_attributes.rb
+  - lib/caruby/domain/resource_dependency.rb
+  - lib/caruby/domain/resource_introspection.rb
+  - lib/caruby/domain/resource_inverse.rb
+  - lib/caruby/domain/resource_metadata.rb
+  - lib/caruby/domain/resource_module.rb
+  - lib/caruby/domain/uniquify.rb
+  - lib/caruby/import/java.rb
+  - lib/caruby/migration/migratable.rb
+  - lib/caruby/migration/migrator.rb
+  - lib/caruby/migration/resource_module.rb
+  - lib/caruby/migration/uniquify.rb
+  - lib/caruby/util/attribute_path.rb
+  - lib/caruby/util/cache.rb
+  - lib/caruby/util/class.rb
+  - lib/caruby/util/collection.rb
+  - lib/caruby/util/controlled_value.rb
+  - lib/caruby/util/coordinate.rb
+  - lib/caruby/util/domain_extent.rb
+  - lib/caruby/util/file_separator.rb
+  - lib/caruby/util/inflector.rb
+  - lib/caruby/util/log.rb
+  - lib/caruby/util/math.rb
+  - lib/caruby/util/merge.rb
+  - lib/caruby/util/module.rb
+  - lib/caruby/util/options.rb
+  - lib/caruby/util/partial_order.rb
+  - lib/caruby/util/person.rb
+  - lib/caruby/util/pretty_print.rb
+  - lib/caruby/util/properties.rb
+  - lib/caruby/util/stopwatch.rb
+  - lib/caruby/util/topological_sync_enumerator.rb
+  - lib/caruby/util/transitive_closure.rb
+  - lib/caruby/util/tree.rb
+  - lib/caruby/util/trie.rb
+  - lib/caruby/util/uniquifier.rb
+  - lib/caruby/util/validation.rb
+  - lib/caruby/util/version.rb
+  - lib/caruby/util/visitor.rb
+  - lib/caruby/util/weak_hash.rb
+  - lib/caruby/yard/resource_metadata_handler.rb
+  - test/lib/caruby/csv/csv_mapper_test.rb
+  - test/lib/caruby/csv/csvio_test.rb
+  - test/lib/caruby/database/persistable_test.rb
+  - test/lib/caruby/domain/domain_test.rb
+  - test/lib/caruby/domain/inversible_test.rb
+  - test/lib/caruby/domain/reference_visitor_test.rb
+  - test/lib/caruby/import/java_test.rb
+  - test/lib/caruby/util/cache_test.rb
+  - test/lib/caruby/util/class_test.rb
+  - test/lib/caruby/util/collection_test.rb
+  - test/lib/caruby/util/command_test.rb
+  - test/lib/caruby/util/controlled_value_test.rb
+  - test/lib/caruby/util/domain_extent_test.rb
+  - test/lib/caruby/util/file_separator_test.rb
+  - test/lib/caruby/util/inflector_test.rb
+  - test/lib/caruby/util/lazy_hash_test.rb
+  - test/lib/caruby/util/merge_test.rb
+  - test/lib/caruby/util/module_test.rb
+  - test/lib/caruby/util/options_test.rb
+  - test/lib/caruby/util/partial_order_test.rb
+  - test/lib/caruby/util/person_test.rb
+  - test/lib/caruby/util/pretty_print_test.rb
+  - test/lib/caruby/util/properties_test.rb
+  - test/lib/caruby/util/stopwatch_test.rb
+  - test/lib/caruby/util/topological_sync_enumerator_test.rb
+  - test/lib/caruby/util/transitive_closure_test.rb
+  - test/lib/caruby/util/tree_test.rb
+  - test/lib/caruby/util/trie_test.rb
+  - test/lib/caruby/util/validation_test.rb
+  - test/lib/caruby/util/version_test.rb
+  - test/lib/caruby/util/visitor_test.rb
+  - test/lib/caruby/util/weak_hash_test.rb
+  - History.txt
+  - LEGAL
+  - LICENSE
+  - README.md
+has_rdoc: true
+homepage: http://rubyforge.org/projects/caruby
 licenses: 
-- MIT
-required_rubygems_version: !ruby/object:Gem::Requirement 
-  none: false
-  requirements: 
-  - - '>='
-    - !ruby/object:Gem::Version 
-      version: "0"
-      segments: 
-      - 0
+  - MIT
+post_install_message: 
+rdoc_options: []
+
+require_paths: 
+  - lib
 required_ruby_version: !ruby/object:Gem::Requirement 
   none: false
   requirements: 
-  - - '>='
-    - !ruby/object:Gem::Version 
-      version: "0"
-      segments: 
-      - 0
-require_paths: 
-- lib
-specification_version: 3
-test_files: []
-
-dependencies: 
-- !ruby/object:Gem::Dependency 
-  prerelease: false
-  type: :runtime
-  name: dbi
-  version_requirements: &id001 !ruby/object:Gem::Requirement 
-    none: false
-    requirements: 
-    - - '>='
-      - !ruby/object:Gem::Version 
-        version: "0"
-        segments: 
-        - 0
-  requirement: *id001
-- !ruby/object:Gem::Dependency 
-  prerelease: false
-  type: :runtime
-  name: fastercsv
-  version_requirements: &id002 !ruby/object:Gem::Requirement 
-    none: false
-    requirements: 
-    - - '>='
+    - - ">="
       - !ruby/object:Gem::Version 
         version: "0"
-        segments: 
-        - 0
-  requirement: *id002
-- !ruby/object:Gem::Dependency 
-  prerelease: false
-  type: :runtime
-  name: uom
-  version_requirements: &id003 !ruby/object:Gem::Requirement 
-    none: false
-    requirements: 
-    - - '>='
+required_rubygems_version: !ruby/object:Gem::Requirement 
+  none: false
+  requirements: 
+    - - ">="
       - !ruby/object:Gem::Version 
         version: "0"
-        segments: 
-        - 0
-  requirement: *id003
-description: "    caRuby is a JRuby facade for interaction with caBIG applications.\n"
-email: caruby.org@gmail.com
-authors: 
-- OHSU
-extra_rdoc_files: []
-
 requirements: []
 
 rubyforge_project: caruby
-autorequire: 
+rubygems_version: 1.5.2
+signing_key: 
+specification_version: 3
+summary: Ruby facade for caBIG applications.
+test_files: []
+