caruby-core 1.4.1
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- data/History.txt +4 -0
- data/LEGAL +5 -0
- data/LICENSE +22 -0
- data/README.md +51 -0
- data/doc/website/css/site.css +1 -5
- data/doc/website/images/avatar.png +0 -0
- data/doc/website/images/favicon.ico +0 -0
- data/doc/website/images/logo.png +0 -0
- data/doc/website/index.html +82 -0
- data/doc/website/install.html +87 -0
- data/doc/website/quick_start.html +87 -0
- data/doc/website/tissue.html +85 -0
- data/doc/website/uom.html +10 -0
- data/lib/caruby.rb +3 -0
- data/lib/caruby/active_support/README.txt +2 -0
- data/lib/caruby/active_support/core_ext/string.rb +7 -0
- data/lib/caruby/active_support/core_ext/string/inflections.rb +167 -0
- data/lib/caruby/active_support/inflections.rb +55 -0
- data/lib/caruby/active_support/inflector.rb +398 -0
- data/lib/caruby/cli/application.rb +36 -0
- data/lib/caruby/cli/command.rb +169 -0
- data/lib/caruby/csv/csv_mapper.rb +157 -0
- data/lib/caruby/csv/csvio.rb +185 -0
- data/lib/caruby/database.rb +252 -0
- data/lib/caruby/database/fetched_matcher.rb +66 -0
- data/lib/caruby/database/persistable.rb +432 -0
- data/lib/caruby/database/persistence_service.rb +162 -0
- data/lib/caruby/database/reader.rb +599 -0
- data/lib/caruby/database/saved_merger.rb +131 -0
- data/lib/caruby/database/search_template_builder.rb +59 -0
- data/lib/caruby/database/sql_executor.rb +75 -0
- data/lib/caruby/database/store_template_builder.rb +200 -0
- data/lib/caruby/database/writer.rb +469 -0
- data/lib/caruby/domain/annotatable.rb +25 -0
- data/lib/caruby/domain/annotation.rb +23 -0
- data/lib/caruby/domain/attribute_metadata.rb +447 -0
- data/lib/caruby/domain/java_attribute_metadata.rb +160 -0
- data/lib/caruby/domain/merge.rb +91 -0
- data/lib/caruby/domain/properties.rb +95 -0
- data/lib/caruby/domain/reference_visitor.rb +289 -0
- data/lib/caruby/domain/resource_attributes.rb +528 -0
- data/lib/caruby/domain/resource_dependency.rb +205 -0
- data/lib/caruby/domain/resource_introspection.rb +159 -0
- data/lib/caruby/domain/resource_metadata.rb +117 -0
- data/lib/caruby/domain/resource_module.rb +285 -0
- data/lib/caruby/domain/uniquify.rb +38 -0
- data/lib/caruby/import/annotatable_class.rb +28 -0
- data/lib/caruby/import/annotation_class.rb +27 -0
- data/lib/caruby/import/annotation_module.rb +67 -0
- data/lib/caruby/import/java.rb +338 -0
- data/lib/caruby/migration/migratable.rb +167 -0
- data/lib/caruby/migration/migrator.rb +533 -0
- data/lib/caruby/migration/resource.rb +8 -0
- data/lib/caruby/migration/resource_module.rb +11 -0
- data/lib/caruby/migration/uniquify.rb +20 -0
- data/lib/caruby/resource.rb +969 -0
- data/lib/caruby/util/attribute_path.rb +46 -0
- data/lib/caruby/util/cache.rb +53 -0
- data/lib/caruby/util/class.rb +99 -0
- data/lib/caruby/util/collection.rb +1053 -0
- data/lib/caruby/util/controlled_value.rb +35 -0
- data/lib/caruby/util/coordinate.rb +75 -0
- data/lib/caruby/util/domain_extent.rb +49 -0
- data/lib/caruby/util/file_separator.rb +65 -0
- data/lib/caruby/util/inflector.rb +20 -0
- data/lib/caruby/util/log.rb +95 -0
- data/lib/caruby/util/math.rb +12 -0
- data/lib/caruby/util/merge.rb +59 -0
- data/lib/caruby/util/module.rb +34 -0
- data/lib/caruby/util/options.rb +92 -0
- data/lib/caruby/util/partial_order.rb +36 -0
- data/lib/caruby/util/person.rb +119 -0
- data/lib/caruby/util/pretty_print.rb +184 -0
- data/lib/caruby/util/properties.rb +112 -0
- data/lib/caruby/util/stopwatch.rb +66 -0
- data/lib/caruby/util/topological_sync_enumerator.rb +53 -0
- data/lib/caruby/util/transitive_closure.rb +45 -0
- data/lib/caruby/util/tree.rb +48 -0
- data/lib/caruby/util/trie.rb +37 -0
- data/lib/caruby/util/uniquifier.rb +30 -0
- data/lib/caruby/util/validation.rb +48 -0
- data/lib/caruby/util/version.rb +56 -0
- data/lib/caruby/util/visitor.rb +351 -0
- data/lib/caruby/util/weak_hash.rb +36 -0
- data/lib/caruby/version.rb +3 -0
- metadata +186 -0
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require 'generator'
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require 'caruby/util/log'
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require 'caruby/util/collection'
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require 'caruby/util/validation'
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require 'caruby/util/options'
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require 'caruby/util/visitor'
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require 'caruby/util/inflector'
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require 'caruby/database/persistable'
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require 'caruby/database/reader'
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require 'caruby/database/writer'
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require 'caruby/database/persistence_service'
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# the caBIG client classes
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import 'gov.nih.nci.system.applicationservice.ApplicationServiceProvider'
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import 'gov.nih.nci.system.comm.client.ClientSession'
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module CaRuby
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# Database operation error.
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class DatabaseError < RuntimeError; end
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# A Database mediates access to a caBIG database. Database is a facade for caBIG application service
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# database operations. Database supports the query, create, update and delete operations supported by
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# the application service.
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#
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# Database strives to provide a simple WYEIWYG (What You Expect Is What You Get) API, consisting of
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# the following workhorse methods:
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# * {Query#query} - fetch domain objects which match a template
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# * {Store#find} - fetch a specific domain object by key
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# * {Store#store} - if a domain object exists in the database, then update it, otherwise create it
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#
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# Any domain object can serve as a query argument. If an optional attribute path is specified, then
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# that path is followed to the result, e.g.:
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# database.query(study, :coordinator)
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# returns the coordinators of studies which match the +study+ template.
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#
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# A domain object find argument must contain enough data to determine whether it exists in the database,
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# i.e. the find argument has a database identifier or a complete secondary key.
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#
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# The {Store#store} method creates or updates references as necessary to persist its argument domain object.
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# It is not necessary to fetch references first or follow dependency ordering rules, which can be
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# implicit and tortuous in caBIG applications. Build the object you want to persist and call the
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# store method. CaRuby::Resource sets reasonable default values, recognizes application dependencies and steers
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# around caBIG idiosyncracies to the extent possible.
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class Database
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include Reader, Writer, Validation
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attr_reader :operations
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# Creates a new Database with the specified service name and options.
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#
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# @param [String] service_name the name of the default {PersistenceService}
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# @param [{Symbol => String}] opts access options
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# @option opts [String] :login application service login user
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# @option opts [String] :password application service login password
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# @example
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# Database.new(:user => 'perdita', :password => 'changeMe')
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def initialize(service_name, opts)
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super()
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# the fetched object cache
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@cache = create_cache
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@defaults = {}
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@user = Options.get(:user, opts)
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@password = Options.get(:password, opts)
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@host = Options.get(:host, opts)
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# class => service hash; default is the catissuecore app service
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@def_persist_svc = PersistenceService.new(service_name, :host => @host)
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@cls_svc_hash = Hash.new(@def_persist_svc)
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# the create/update nested operations
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@operations = []
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# the objects for which exists? is unsuccessful in the context of a nested operation
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@transients = Set.new
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end
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# Calls the block given to this method with this database as an argument, and closes the
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# database when done.
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#
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# @yield [database] the operation to perform on the database
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# @yieldparam [Database] database self
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def open
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# reset the execution timers
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persistence_services.each { |svc| svc.timer.reset }
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# call the block and close when done
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yield(self) ensure close
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end
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# Releases database resources. This method should be called when database interaction
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# is completed.
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def close
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return if @session.nil?
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begin
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@session.terminate_session
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rescue Exception => e
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logger.error("Session termination unsuccessful - #{e.message}")
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end
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# clear the cache
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@cache.clear
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logger.info("Disconnected from application server.")
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@session = nil
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end
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# Returns the execution time spent since the last open.
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def execution_time
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persistence_services.inject(0) do |total, svc|
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st = svc.timer.elapsed
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total + st
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end
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end
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# Returns the PersistanceService to use for the given domain object obj,
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# or the default service if obj is nil.
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def persistence_service(obj=nil)
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start_session if @session.nil?
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return @def_persist_svc if obj.nil?
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klass = Class === obj ? obj : obj.class
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@cls_svc_hash[klass]
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end
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# Returns all PersistanceServices used by this database.
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def persistence_services
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[@def_persist_svc].to_set.merge!(@cls_svc_hash.values)
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end
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# Returns the database operation elapsed real time since the last open.
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def database_time
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persistence_services.inject(0) do |total, svc|
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st = svc.timer.elapsed
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# reset the timer for the next test case
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svc.timer.reset
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total + st
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end
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end
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# A mergeable autogenerated operation is recursively defined as:
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# * a create
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# * an update in the context of a mergeable autogenerated operation
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#
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# @return whether the innermost operation conforms to the above criterion
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def mergeable_autogenerated_operation?
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# the inner operation subject
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inner = nil
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@operations.reverse_each do |op|
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if inner and op.subject != inner.owner then
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# not a dependent
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return false
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end
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if op.type == :create then
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# innermost or owner create
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return true
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elsif op.type != :update then
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# not a save
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return false
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end
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# iterate to the scoping operation
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inner = op.subject
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end
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false
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end
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alias :to_s :print_class_and_id
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alias :inspect :to_s
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private
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## Utility classes and methods, used by Query and Store mix-ins ##
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# Database CRUD operation.
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class Operation
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attr_reader :type, :subject, :attribute
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def initialize(type, subject, attribute=nil)
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@type = type
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@subject = subject
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@attribute = attribute
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end
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end
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# Performs the operation given by the given op symbol on obj by calling the block given to this method.
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# Returns the result of calling the block.
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# Valid op symbols are described in {Operation#initialize}.
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def perform(op, obj, attribute=nil)
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op_s = op.to_s.capitalize_first
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attr_s = " #{attribute}" if attribute
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ctxt_s = " in context #{print_operations}" unless @operations.empty?
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logger.info(">> #{op_s} #{obj.pp_s(:single_line)}#{attr_s}#{ctxt_s}...")
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@operations.push(Operation.new(op, obj, attribute))
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begin
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# perform the operation
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result = yield
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ensure
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# the operation is done
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@operations.pop
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# If this is a top-level operation, then clear the cache and transient set.
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if @operations.empty? then
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@cache.clear
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@transients.clear
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end
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end
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logger.info("<< Completed #{obj.qp}#{attr_s} #{op}.")
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result
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end
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# @return [Cache] a new object cache.
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def create_cache
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# JRuby alert - identifier is not a stable object when fetched from the database, i.e.:
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# obj.identifier.equal?(obj.identifier) #=> false
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# This is probably an artifact of jRuby Numeric - Java Long conversion interaction
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# combined with hash access use of the eql? method. Work-around is to make a Ruby Integer.
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# the fetched object copier
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copier = Proc.new do |src|
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copy = src.copy
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logger.debug { "Fetched #{src.qp} copied to #{copy.qp}." }
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copy
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end
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# the fetched object cache
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Cache.new(copier) do |obj|
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raise ArgumentError.new("Can't cache object without identifier: #{obj}") unless obj.identifier
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obj.identifier.to_s.to_i
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end
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end
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# Initializes the default application service.
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def start_session
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raise DatabaseError.new('Application user option missing') if @user.nil?
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raise DatabaseError.new('Application password option missing') if @password.nil?
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# caCORE alert - obtaining a caCORE session instance mysteriously depends on referencing the application service first
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@def_persist_svc.app_service
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@session = ClientSession.instance()
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connect(@user, @password)
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end
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# Returns the current database operation stack as a String.
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def print_operations
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ops = @operations.reverse.map do |op|
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attr_s = " #{op.attribute}" if op.attribute
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"#{op.type.to_s.capitalize_first} #{op.subject.qp}#{attr_s}"
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end
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ops.qp
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end
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# Connects to the database.
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def connect(user, password)
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logger.debug { "Connecting to application server with login id #{user}..." }
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begin
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@session.start_session(user, password)
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rescue Exception => e
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logger.error("Login of #{user} unsuccessful - #{e.message}") and raise
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end
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logger.info("Connected to application server.")
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end
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end
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end
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require 'caruby/util/options'
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require 'caruby/util/collection'
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require 'caruby/util/cache'
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require 'caruby/util/pretty_print'
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require 'caruby/domain/reference_visitor'
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require 'caruby/database/search_template_builder'
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module CaRuby
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class Database
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# Proc that matches fetched sources to targets.
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class FetchedMatcher < Proc
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# Initializes a new FetchedMatcher.
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#
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# @param [{Symbol => Object}, Symbol, nil] opts the match options
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# @option [Boolean] opts :relaxed flag indicating whether a {Resource#minimal_match?} is
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# used in the match on the fetched content
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def initialize(opts=nil)
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super() { |srcs, tgts| match_fetched(srcs, tgts) }
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@relaxed = Options.get(:relaxed, opts)
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end
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private
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# Returns a target => source match hash for the given targets and sources.
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def match_fetched(sources, targets)
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return Hash::EMPTY_HASH if sources.empty? or targets.empty?
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logger.debug { "Matching database content #{sources.qp} to #{targets.qp}..." }
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# match source => target based on the key
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unmatched = Set === sources ? sources.dup : sources.to_set
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matches = {}
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targets.each do |tgt|
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src = tgt.match_in_owner_scope(unmatched)
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next unless src
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matches[src] = tgt
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unmatched.delete(src)
|
37
|
+
end
|
38
|
+
|
39
|
+
# match residual targets, if any, on a relaxed criterion
|
40
|
+
if @relaxed and matches.size != targets.size then
|
41
|
+
unmtchd_tgts = targets.to_set - matches.keys.delete_if { |tgt| tgt.identifier }
|
42
|
+
unmtchd_srcs = sources.to_set - matches.values
|
43
|
+
min_mtchs = match_minimal(unmtchd_srcs, unmtchd_tgts)
|
44
|
+
matches.merge!(min_mtchs)
|
45
|
+
end
|
46
|
+
|
47
|
+
logger.debug { "Matched database sources to targets #{matches.qp}." } unless matches.empty?
|
48
|
+
matches
|
49
|
+
end
|
50
|
+
|
51
|
+
#@param [<Resource>] sources the source objects to match
|
52
|
+
#@param [<Resource>] targets the potential match target objects
|
53
|
+
# @return (see #match_saved)
|
54
|
+
def match_minimal(sources, targets)
|
55
|
+
matches = {}
|
56
|
+
unmatched = Set === sources ? sources.to_set : sources.dup
|
57
|
+
targets.each do |tgt|
|
58
|
+
src = unmatched.detect { |src| tgt.minimal_match?(src) } || next
|
59
|
+
matches[src] = tgt
|
60
|
+
unmatched.delete(src)
|
61
|
+
end
|
62
|
+
matches
|
63
|
+
end
|
64
|
+
end
|
65
|
+
end
|
66
|
+
end
|
@@ -0,0 +1,432 @@
|
|
1
|
+
require 'caruby/util/log'
|
2
|
+
require 'caruby/util/pretty_print'
|
3
|
+
require 'caruby/util/inflector'
|
4
|
+
require 'caruby/util/collection'
|
5
|
+
require 'caruby/util/validation'
|
6
|
+
|
7
|
+
module CaRuby
|
8
|
+
# The Persistable mixin adds persistance capability.
|
9
|
+
module Persistable
|
10
|
+
include Validation
|
11
|
+
|
12
|
+
# @return [LazyLoader] the loader which fetches references on demand
|
13
|
+
attr_reader :lazy_loader
|
14
|
+
|
15
|
+
# @return [{Symbol => Object}] the content value hash at the point of the last
|
16
|
+
# take_snapshot call
|
17
|
+
attr_reader :snapshot
|
18
|
+
|
19
|
+
# @return [#query, #find, #store, #create, #update, #delete] the data access mediator
|
20
|
+
# for this Persistable
|
21
|
+
# @raise [NotImplementedError] if the subclass does not define this method
|
22
|
+
def database
|
23
|
+
raise NotImplementedError.new("Database operations are not available for #{self}")
|
24
|
+
end
|
25
|
+
|
26
|
+
# Fetches the domain objects which match this template from the {#database}.
|
27
|
+
#
|
28
|
+
# @param path (see Reader#query)
|
29
|
+
# @return (see Reader#query)
|
30
|
+
# @raise (see #database)
|
31
|
+
# @raise (see Reader#query)
|
32
|
+
# @see Reader#query
|
33
|
+
def query(*path)
|
34
|
+
path.empty? ? database.query(self) : database.query(self, *path)
|
35
|
+
end
|
36
|
+
|
37
|
+
# Fetches this domain object from the {#database}.
|
38
|
+
#
|
39
|
+
# @param opts (see Reader#find)
|
40
|
+
# @option (see Reader#find)
|
41
|
+
# @return (see Reader#find)
|
42
|
+
# @raise (see #database)
|
43
|
+
# @raise (see Reader#find)
|
44
|
+
# @see Reader#find
|
45
|
+
def find(opts=nil)
|
46
|
+
database.find(self, opts)
|
47
|
+
end
|
48
|
+
|
49
|
+
# Creates this domain object in the {#database}.
|
50
|
+
#
|
51
|
+
# @return (see Writer#create)
|
52
|
+
# @raise (see #database)
|
53
|
+
# @raise (see Writer#create)
|
54
|
+
# @see Writer#create
|
55
|
+
def create
|
56
|
+
database.create(self)
|
57
|
+
end
|
58
|
+
|
59
|
+
# Saves this domain object in the {#database}.
|
60
|
+
#
|
61
|
+
# @return (see Writer#save)
|
62
|
+
# @raise (see #database)
|
63
|
+
# @raise (see Writer#save)
|
64
|
+
# @see Writer#save
|
65
|
+
def save
|
66
|
+
database.save(self)
|
67
|
+
end
|
68
|
+
|
69
|
+
alias :store :save
|
70
|
+
|
71
|
+
# Updates this domain object in the {#database}.
|
72
|
+
#
|
73
|
+
# @return (see Writer#update)
|
74
|
+
# @raise (see #database)
|
75
|
+
# @raise (see Writer#update)
|
76
|
+
# @see Writer#update
|
77
|
+
def update
|
78
|
+
database.update(self)
|
79
|
+
end
|
80
|
+
|
81
|
+
# Deletes this domain object from the {#database}.
|
82
|
+
#
|
83
|
+
# @return (see Writer#delete)
|
84
|
+
# @raise (see #database)
|
85
|
+
# @raise (see Writer#delete)
|
86
|
+
# @see Writer#delete
|
87
|
+
def delete
|
88
|
+
database.delete(self)
|
89
|
+
end
|
90
|
+
|
91
|
+
alias :== :equal?
|
92
|
+
|
93
|
+
alias :eql? :==
|
94
|
+
|
95
|
+
# Captures the Persistable's updatable attribute base values.
|
96
|
+
# The snapshot is subsequently accessible using the {#snapshot} method.
|
97
|
+
#
|
98
|
+
# @return [{Symbol => Object}] the snapshot value hash
|
99
|
+
def take_snapshot
|
100
|
+
@snapshot = value_hash(self.class.updatable_attributes)
|
101
|
+
end
|
102
|
+
|
103
|
+
# @return [Boolean] whether this Persistable has a {#snapshot}
|
104
|
+
def snapshot_taken?
|
105
|
+
not @snapshot.nil?
|
106
|
+
end
|
107
|
+
|
108
|
+
# Returns whether this Persistable either doesn't have a snapshot or has changed since the last snapshot.
|
109
|
+
# This is a conservative condition test that returns false if there is no snaphsot for this Persistable
|
110
|
+
# and therefore no basis to determine whether the content changed.
|
111
|
+
#
|
112
|
+
# @return [Boolean] whether this Persistable's content differs from its snapshot
|
113
|
+
def changed?
|
114
|
+
@snapshot.nil? or not snapshot_equal_content?
|
115
|
+
end
|
116
|
+
|
117
|
+
# @return [<Symbol>] the attributes which differ between the {#snapshot} and current content
|
118
|
+
def changed_attributes
|
119
|
+
if @snapshot then
|
120
|
+
ovh = value_hash(self.class.updatable_attributes)
|
121
|
+
@snapshot.diff(ovh).keys
|
122
|
+
else
|
123
|
+
self.class.updatable_attributes
|
124
|
+
end
|
125
|
+
end
|
126
|
+
|
127
|
+
# Lazy loads the attributes. If a block is given to this method, then the attributes are determined
|
128
|
+
# by calling the block with this Persistable as a parameter. Otherwise, the default attributes
|
129
|
+
# are the unfetched domain attributes.
|
130
|
+
#
|
131
|
+
# Each of the attributes which does not already hold a non-nil or non-empty value
|
132
|
+
# will be loaded from the database on demand.
|
133
|
+
# This method injects attribute value initialization into each loadable attribute reader.
|
134
|
+
# The initializer is given by either the loader Proc argument or the block provided
|
135
|
+
# to this method. The loader takes two arguments, the target object and the attribute to load.
|
136
|
+
# If this Persistable already has a lazy loader, then this method is a no-op.
|
137
|
+
#
|
138
|
+
# Lazy loading is disabled on an attribute after it is invoked on that attribute or when the
|
139
|
+
# attribute setter method is called.
|
140
|
+
#
|
141
|
+
# @param loader [LazyLoader] the lazy loader to add
|
142
|
+
# @yield [sources, targets] source => target matcher
|
143
|
+
# @yieldparam [<Resource>] sources the fetched domain object match candidates
|
144
|
+
# @yieldparam [<Resource>] targets the search target domain objects to match
|
145
|
+
# @raise [ValidationError] if this domain object does not have an identifier
|
146
|
+
def add_lazy_loader(loader, &matcher)
|
147
|
+
# guard against invalid call
|
148
|
+
raise ValidationError.new("Cannot add lazy loader to an unfetched domain object: #{self}") if identifier.nil?
|
149
|
+
# no-op if there is already a loader
|
150
|
+
return if @lazy_loader
|
151
|
+
|
152
|
+
# the attributes to lazy-load
|
153
|
+
attrs = self.class.loadable_attributes
|
154
|
+
return if attrs.empty?
|
155
|
+
|
156
|
+
# make the lazy loader
|
157
|
+
@lazy_loader = LazyLoader.new(self, loader, &matcher)
|
158
|
+
# define the reader and writer method overrides for the missing attributes
|
159
|
+
loaded = attrs.select { |attr| persistable__add_loader(attr) }
|
160
|
+
logger.debug { "Lazy loader added to #{qp} attributes #{loaded.to_series}." } unless loaded.empty?
|
161
|
+
end
|
162
|
+
|
163
|
+
# Returns the attributes to load on demand. The base attribute list is given by
|
164
|
+
# {ResourceAttributes#loadable_attributes}. In additon, if this Persistable has
|
165
|
+
# more than one {ResourceDependency#owner_attributes} and one is non-nil, then
|
166
|
+
# none of the owner attributes are loaded on demand, since there can be at most
|
167
|
+
# one owner and ownership cannot change.
|
168
|
+
#
|
169
|
+
# @return [<Symbol>] the attributes to load on demand
|
170
|
+
def loadable_attributes
|
171
|
+
ownr_attrs = self.class.owner_attributes
|
172
|
+
if ownr_attrs.size == 2 and ownr_attrs.detect { |attr| send(ownr_attr) } then
|
173
|
+
self.class.loadable_attributes - ownr_attrs
|
174
|
+
else
|
175
|
+
self.class.loadable_attributes
|
176
|
+
end
|
177
|
+
end
|
178
|
+
|
179
|
+
# Disables this Persistable's lazy loader, if one exists. If a block is given to this
|
180
|
+
# method, then the loader is only disabled while the block is executed.
|
181
|
+
#
|
182
|
+
# @yield the block to call while the loader is suspended
|
183
|
+
# @return the result of calling the block, or self if no block is given
|
184
|
+
def suspend_lazy_loader
|
185
|
+
unless @lazy_loader and @lazy_loader.enabled? then
|
186
|
+
return block_given? ? yield : self
|
187
|
+
end
|
188
|
+
@lazy_loader.disable
|
189
|
+
return self unless block_given?
|
190
|
+
begin
|
191
|
+
yield
|
192
|
+
ensure
|
193
|
+
@lazy_loader.enable
|
194
|
+
end
|
195
|
+
end
|
196
|
+
|
197
|
+
# Enables this Persistable's lazy loader, if one exists. If a block is given to this
|
198
|
+
# method, then the loader is only enabled while the block is executed.
|
199
|
+
#
|
200
|
+
# @yield the block to call while the loader is enabled
|
201
|
+
# @return the result of calling the block, or self if no block is given
|
202
|
+
def resume_lazy_loader
|
203
|
+
unless @lazy_loader and @lazy_loader.disabled? then
|
204
|
+
return block_given? ? yield : self
|
205
|
+
end
|
206
|
+
@lazy_loader.enable
|
207
|
+
return self unless block_given?
|
208
|
+
begin
|
209
|
+
yield
|
210
|
+
ensure
|
211
|
+
@lazy_loader.disable
|
212
|
+
end
|
213
|
+
end
|
214
|
+
|
215
|
+
# Disables lazy loading of the specified attribute. Lazy loaded is disabled for all attributes
|
216
|
+
# if no attribute is specified. This method is a no-op if this Persistable does not have a lazy
|
217
|
+
# loader.
|
218
|
+
#
|
219
|
+
# @param [Symbol] the attribute to remove from the load list, or nil if to remove all attributes
|
220
|
+
def remove_lazy_loader(attribute=nil)
|
221
|
+
return if @lazy_loader.nil?
|
222
|
+
if attribute.nil? then
|
223
|
+
self.class.domain_attributes.each { |attr| remove_lazy_loader(attr) }
|
224
|
+
@lazy_loader = nil
|
225
|
+
return
|
226
|
+
end
|
227
|
+
|
228
|
+
# the modified accessor method
|
229
|
+
reader, writer = self.class.attribute_metadata(attribute).accessors
|
230
|
+
# remove the reader override
|
231
|
+
disable_singleton_method(reader)
|
232
|
+
# remove the writer override
|
233
|
+
disable_singleton_method(writer)
|
234
|
+
end
|
235
|
+
|
236
|
+
# Returns whether this domain object must be fetched to reflect the database state.
|
237
|
+
# This default implementation returns whether there are any autogenerated attributes.
|
238
|
+
# Subclasses can override with more restrictive conditions.
|
239
|
+
#
|
240
|
+
# caBIG alert - the auto-generated criterion is a sufficient but not necessary condition
|
241
|
+
# to determine whether a save caCORE result does not necessarily accurately reflect the
|
242
|
+
# database state. Examples:
|
243
|
+
# * caTissue SCG name is auto-generated on SCG create but not SCG update.
|
244
|
+
# * caTissue SCG event parameters are not auto-generated on SCG create if the SCG collection
|
245
|
+
# status is Pending, but are auto-generated on SCG update if the SCG status is changed
|
246
|
+
# to Complete.
|
247
|
+
# The caBIG application can override this method in a Database subclass to fine-tune the
|
248
|
+
# fetch criteria. Adding a more restrictive {#fetch_saved?} condition will will improve
|
249
|
+
# performance but not change functionality.
|
250
|
+
#
|
251
|
+
# @return [Boolean] whether this domain object must be fetched to reflect the database state
|
252
|
+
def fetch_saved?
|
253
|
+
not self.class.autogenerated_attributes.empty?
|
254
|
+
end
|
255
|
+
|
256
|
+
# Sets the {ResourceAttributes#volatile_nondomain_attributes} to the other fetched value,
|
257
|
+
# if different.
|
258
|
+
#
|
259
|
+
# @param [Resource] other the fetched domain object reflecting the database state
|
260
|
+
def copy_volatile_attributes(other)
|
261
|
+
self.class.volatile_nondomain_attributes.each do |attr|
|
262
|
+
val = send(attr)
|
263
|
+
oval = other.send(attr)
|
264
|
+
# set the attribute to the other value if it differs from the current value
|
265
|
+
unless oval == val then
|
266
|
+
# if this error occurs, then there is a serious match-merge flaw
|
267
|
+
if val and attr == :identifier then
|
268
|
+
raise DatabaseError.new("Can't copy #{other} to #{self} with different identifier")
|
269
|
+
end
|
270
|
+
# overwrite the current attribute value
|
271
|
+
set_attribute(attr, oval)
|
272
|
+
logger.debug { "Set #{qp} volatile #{attr} to the fetched #{other.qp} database value #{oval.qp}." }
|
273
|
+
end
|
274
|
+
end
|
275
|
+
end
|
276
|
+
|
277
|
+
private
|
278
|
+
|
279
|
+
# Returns whether the {#snapshot} and current content are equal.
|
280
|
+
# The attribute values _v_ and _ov_ of the snapshot and current content, resp., are
|
281
|
+
# compared with equality determined by {Resource.value_equal?}.
|
282
|
+
#
|
283
|
+
# @return [Boolean] whether the {#snapshot} and current content are equal
|
284
|
+
def snapshot_equal_content?
|
285
|
+
vh = @snapshot
|
286
|
+
ovh = value_hash(self.class.updatable_attributes)
|
287
|
+
if vh.size < ovh.size then
|
288
|
+
attr, oval = ovh.detect { |a, v| not vh.has_key?(a) }
|
289
|
+
logger.debug { "#{qp} is missing snapshot #{attr} compared to the current value #{oval.qp}." }
|
290
|
+
false
|
291
|
+
elsif vh.size > ovh.size then
|
292
|
+
attr, value = vh.detect { |a, v| not ovh.has_key?(a) }
|
293
|
+
logger.debug { "#{qp} has snapshot #{attr} value #{value.qp} not found in current content." }
|
294
|
+
false
|
295
|
+
else
|
296
|
+
vh.all? do |attr, value|
|
297
|
+
oval = ovh[attr]
|
298
|
+
eq = Resource.value_equal?(oval, value)
|
299
|
+
unless eq then
|
300
|
+
logger.debug { "#{qp} #{attr} snapshot value #{value.qp} differs from the current value #{oval.qp}." }
|
301
|
+
end
|
302
|
+
eq
|
303
|
+
end
|
304
|
+
end
|
305
|
+
end
|
306
|
+
|
307
|
+
# Adds this Persistable lazy loader to the given attribute unless the attribute already holds a fetched reference.
|
308
|
+
# Returns the loader if the loader was added to attribute.
|
309
|
+
def persistable__add_loader(attribute)
|
310
|
+
# bail if there is already a fetched reference
|
311
|
+
return if send(attribute).to_enum.any? { |ref| ref.identifier }
|
312
|
+
|
313
|
+
# the accessor methods to modify
|
314
|
+
attr_md = self.class.attribute_metadata(attribute)
|
315
|
+
reader, writer = attr_md.accessors
|
316
|
+
raise NotImplementedError.new("Missing writer method for #{self.class.qp} attribute #{attribute}") if writer.nil?
|
317
|
+
|
318
|
+
# define the singleton attribute reader method
|
319
|
+
instance_eval "def #{reader}; @lazy_loader ? persistable__load_reference(:#{attribute}) : super; end"
|
320
|
+
# define the singleton attribute writer method
|
321
|
+
instance_eval "def #{writer}(value); remove_lazy_loader(:#{attribute}); super; end"
|
322
|
+
|
323
|
+
@lazy_loader
|
324
|
+
end
|
325
|
+
|
326
|
+
# Loads the reference attribute database value into this Persistable.
|
327
|
+
#
|
328
|
+
# @param [Symbol] attribute the attribute to load
|
329
|
+
# @return the attribute value merged from the database value
|
330
|
+
def persistable__load_reference(attribute)
|
331
|
+
attr_md = self.class.attribute_metadata(attribute)
|
332
|
+
# bypass the singleton method and call the class instance method if the lazy loader is disabled
|
333
|
+
unless @lazy_loader.enabled? then
|
334
|
+
# the modified accessor method
|
335
|
+
reader, writer = attr_md.accessors
|
336
|
+
return self.class.instance_method(reader).bind(self).call
|
337
|
+
end
|
338
|
+
|
339
|
+
# Disable lazy loading first for the attribute, since the reader method might be called in
|
340
|
+
# the sequel, resulting in an infinite loop when the lazy loader is retriggered.
|
341
|
+
remove_lazy_loader(attribute)
|
342
|
+
logger.debug { "Lazy-loading #{qp} #{attribute}..." }
|
343
|
+
# the current value
|
344
|
+
oldval = send(attribute)
|
345
|
+
# load the fetched value
|
346
|
+
fetched = @lazy_loader.load(attribute)
|
347
|
+
# nothing to do if nothing fetched
|
348
|
+
return oldval if fetched.nil_or_empty?
|
349
|
+
|
350
|
+
# merge the fetched into the attribute
|
351
|
+
logger.debug { "Merging #{qp} fetched #{attribute} value #{fetched.qp}#{' into ' + oldval.qp if oldval}..." }
|
352
|
+
matcher = @lazy_loader.matcher
|
353
|
+
merged = merge_attribute_value(attribute, oldval, fetched, &matcher)
|
354
|
+
# update the snapshot of dependents
|
355
|
+
if attr_md.dependent? then
|
356
|
+
# the owner attribute
|
357
|
+
oattr = attr_md.inverse
|
358
|
+
if oattr then
|
359
|
+
# update dependent snapshot with the owner, since the owner snapshot is taken when fetched but the
|
360
|
+
# owner might be set when the fetched dependent is merged into the owner dependent attribute.
|
361
|
+
merged.enumerate do |dep|
|
362
|
+
if dep.snapshot_taken? then
|
363
|
+
dep.snapshot[oattr] = self
|
364
|
+
logger.debug { "Updated #{qp} #{attribute} fetched dependent #{dep.qp} snapshot with #{oattr} value #{qp}." }
|
365
|
+
end
|
366
|
+
end
|
367
|
+
end
|
368
|
+
end
|
369
|
+
merged
|
370
|
+
end
|
371
|
+
|
372
|
+
# Disables the given singleton attribute accessor method.
|
373
|
+
#
|
374
|
+
# @param [String, Symbol] name_or_sym the accessor method to disable
|
375
|
+
def disable_singleton_method(name_or_sym)
|
376
|
+
return unless singleton_methods.include?(name_or_sym.to_s)
|
377
|
+
# dissociate the method from this instance
|
378
|
+
method = self.method(name_or_sym.to_sym)
|
379
|
+
method.unbind
|
380
|
+
# JRuby alert - Unbind doesn't work in JRuby 1.1.6. In that case, redefine the singleton method to delegate
|
381
|
+
# to the class instance method.
|
382
|
+
if singleton_methods.include?(name_or_sym.to_s) then
|
383
|
+
args = (1..method.arity).map { |argnum| "arg#{argnum}" }.join(', ')
|
384
|
+
instance_eval "def #{name_or_sym}(#{args}); super; end"
|
385
|
+
end
|
386
|
+
end
|
387
|
+
|
388
|
+
class LazyLoader
|
389
|
+
# @return [Proc] the source => target matcher
|
390
|
+
attr_reader :matcher
|
391
|
+
|
392
|
+
# Creates a new LazyLoader which calls the loader Proc on the subject.
|
393
|
+
#
|
394
|
+
# @raise [ArgumentError] if the loader is not given to this initializer
|
395
|
+
def initialize(subject, loader=nil, &matcher)
|
396
|
+
@subject = subject
|
397
|
+
# the loader proc from either the argument or the block
|
398
|
+
@loader = loader
|
399
|
+
@matcher = matcher
|
400
|
+
raise ArgumentError.new("Neither a loader nor a block is given to the LazyLoader initializer") if @loader.nil?
|
401
|
+
@enabled = true
|
402
|
+
end
|
403
|
+
|
404
|
+
# Returns whether this loader is enabled.
|
405
|
+
def enabled?
|
406
|
+
@enabled
|
407
|
+
end
|
408
|
+
|
409
|
+
# Returns whether this loader is disabled.
|
410
|
+
def disabled?
|
411
|
+
not @enabled
|
412
|
+
end
|
413
|
+
|
414
|
+
# Disable this loader.
|
415
|
+
def disable
|
416
|
+
@enabled = false
|
417
|
+
end
|
418
|
+
|
419
|
+
# Enables this loader.
|
420
|
+
def enable
|
421
|
+
@enabled = true
|
422
|
+
end
|
423
|
+
|
424
|
+
# Returns the attribute value loaded from the database.
|
425
|
+
# Raises DatabaseError if this loader is disabled.
|
426
|
+
def load(attribute)
|
427
|
+
raise DatabaseError.new("#{qp} lazy load called on disabled loader") unless enabled?
|
428
|
+
@loader.call(@subject, attribute)
|
429
|
+
end
|
430
|
+
end
|
431
|
+
end
|
432
|
+
end
|